00:57:57 Started by upstream project "Trigger" build number 412 00:57:57 originally caused by: 00:57:57 Started by timer 00:57:57 Running as SYSTEM 00:57:58 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:57:58 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7863935371115958157.sh 00:57:58 + source /home/settings.env 00:57:58 ++ OMERO_DB_HOST=pg 00:57:58 ++ OMERO_DB_USER=postgres 00:57:58 ++ OMERO_DB_PASS= 00:57:58 ++ OMERO_ROOT_PASS=omero 00:57:58 ++ OMERO_DATA_DIR=/OMERO 00:57:58 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:57:58 + OMERO_DB_NAME=OMERO-server 00:57:58 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:57:58 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:57:58 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:57:58 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:57:58 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:57:58 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:57:58 ++ deactivate nondestructive 00:57:58 ++ '[' -n '' ']' 00:57:58 ++ '[' -n '' ']' 00:57:58 ++ '[' -n /bin/bash -o -n '' ']' 00:57:58 ++ hash -r 00:57:58 ++ '[' -n '' ']' 00:57:58 ++ unset VIRTUAL_ENV 00:57:58 ++ '[' '!' nondestructive = nondestructive ']' 00:57:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:57:58 ++ export VIRTUAL_ENV 00:57:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:57:58 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:57:58 ++ export PATH 00:57:58 ++ '[' -n '' ']' 00:57:58 ++ '[' -z '' ']' 00:57:58 ++ _OLD_VIRTUAL_PS1= 00:57:58 ++ PS1='(.venv3) ' 00:57:58 ++ export PS1 00:57:58 ++ '[' -n /bin/bash -o -n '' ']' 00:57:58 ++ hash -r 00:57:58 + omero admin stop 00:58:16 Waiting on shutdown. Use CTRL-C to exit 00:58:16 .+ sleep 5 00:58:31 + deactivate 00:58:31 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:58:31 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:58:31 + export PATH 00:58:31 + unset _OLD_VIRTUAL_PATH 00:58:31 + '[' -n '' ']' 00:58:31 + '[' -n /bin/bash -o -n '' ']' 00:58:31 + hash -r 00:58:31 + '[' -n '' ']' 00:58:31 + unset VIRTUAL_ENV 00:58:31 + '[' '!' '' = nondestructive ']' 00:58:31 + unset -f deactivate 00:58:31 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:58:32 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:58:38 + '[' false = true ']' 00:58:38 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:58:38 Skipping PURGE_DATA:CleanDbAndRepo 00:58:38 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.2-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.7.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:59:02 Copied 1 artifact from "OMERO-build" build number 352 00:59:02 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 348 00:59:02 Copied 2 artifacts from "OMERO-build-build" build number 375 00:59:02 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13668400565206968946.sh 00:59:02 + source /home/settings.env 00:59:02 ++ OMERO_DB_HOST=pg 00:59:02 ++ OMERO_DB_USER=postgres 00:59:02 ++ OMERO_DB_PASS= 00:59:02 ++ OMERO_ROOT_PASS=omero 00:59:02 ++ OMERO_DATA_DIR=/OMERO 00:59:02 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:59:02 + OMERO_DB_NAME=OMERO-server 00:59:02 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:59:02 + mkdir -p /home/omero/omero-server-data 00:59:02 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:59:02 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:59:02 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:59:02 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:59:02 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:59:02 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:59:02 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:59:02 ++ ls OMERO.server-5.6.3-548-bf8a6734d5-ice36.zip 00:59:02 + ZIP=OMERO.server-5.6.3-548-bf8a6734d5-ice36.zip 00:59:02 + '[' '!' -z '' ']' 00:59:02 + DIST=OMERO.server-5.6.3-548-bf8a6734d5-ice36 00:59:02 + unzip OMERO.server-5.6.3-548-bf8a6734d5-ice36.zip 00:59:02 Archive: OMERO.server-5.6.3-548-bf8a6734d5-ice36.zip 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/blitz/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/grid/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/profiles/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/error/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/grid/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/luts/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/luts/janelia/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/luts/matplotlib/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/luts/ncsa_paledit/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/luts/seaborn/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/luts/wcif/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/omero/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/omero/analysis_scripts/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/omero/annotation_scripts/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/omero/export_scripts/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/omero/figure_scripts/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/omero/import_scripts/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/scripts/omero/util_scripts/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/server/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/share/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/share/licenses/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/misc/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__1/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__10/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__11/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__2/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__3/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__4/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__5/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__6/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__7/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__8/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3A__9/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3__4/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3__5/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3__6/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3__7/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.1__0/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.2__0/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.2__0/t/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.3__0/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.4__0/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4__0/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.0__0/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.1__1/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.2__0/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.3__0/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4DEV__1/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4DEV__2/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4DEV__3/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/ 00:59:02 creating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/var/ 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/LICENSE.txt 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/backup.cfg 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/blitz/mail-senders.example 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/blitz/mail-server.example 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/build.properties 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/env.bat 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/env.sh 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/hibernate.properties 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/ice.config 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/logback-cli.xml 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/logback-indexing-cli.xml 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/logback-indexing.xml 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/logback.xml 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/mime.types 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/node1.cfg 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/node2.cfg 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/omero.properties 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/profiles/psql 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/rollover.cfg 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/Windows.cfg 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/error/maintainance.html 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/grid/README 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/grid/default.xml 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/grid/templates.xml 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/grid/windefault.xml 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/ice.config 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/internal.cfg 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/master.cfg 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/templates/robot.template 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/etc/testdropbox.config 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/history.rst 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/OMEZarrReader.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/activation.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/aggdesigner-algorithm.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/aircompressor.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/annotations.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/antlr.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/aopalliance.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/avatica-core.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/avatica-metrics.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/aws-java-sdk-core.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/aws-java-sdk-kms.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/aws-java-sdk-s3.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/base.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-all.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-anim.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-awt-util.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-bridge.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-codec.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-constants.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-css.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-dom.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-ext.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-extension.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-gui-util.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-gvt.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-i18n.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-parser.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-rasterizer-ext.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-rasterizer.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-script.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-slideshow.jar 00:59:02 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/lib/client/batik-squiggle-ext.jar 00:59:02 inflating: 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OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3__6/OMERO3__5.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO3__7/OMERO3__6.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/schema.sql 00:59:05 inflating: OMERO.server-5.6.3-548-bf8a6734d5-ice36/sql/psql/OMERO5.4__0/views.sql 00:59:05 + rm -f OMERO.server-5.6.3-548-bf8a6734d5-ice36.zip 00:59:05 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-548-bf8a6734d5-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:59:05 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:59:05 ++ deactivate nondestructive 00:59:05 ++ '[' -n '' ']' 00:59:05 ++ '[' -n '' ']' 00:59:05 ++ '[' -n /bin/bash -o -n '' ']' 00:59:05 ++ hash -r 00:59:05 ++ '[' -n '' ']' 00:59:05 ++ unset VIRTUAL_ENV 00:59:05 ++ '[' '!' nondestructive = nondestructive ']' 00:59:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:59:05 ++ export VIRTUAL_ENV 00:59:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:59:05 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:59:05 ++ export PATH 00:59:05 ++ '[' -n '' ']' 00:59:05 ++ '[' -z '' ']' 00:59:05 ++ _OLD_VIRTUAL_PS1= 00:59:05 ++ PS1='(.venv3) ' 00:59:05 ++ export PS1 00:59:05 ++ '[' -n /bin/bash -o -n '' ']' 00:59:05 ++ hash -r 00:59:05 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:59:05 Collecting zeroc-ice==3.6.5 00:59:06 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:59:08 Installing collected packages: zeroc-ice 00:59:08 Successfully installed zeroc-ice-3.6.5 00:59:08 + pip install -U pip future 00:59:09 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:59:09 Collecting pip 00:59:09 Using cached pip-25.0.1-py3-none-any.whl (1.8 MB) 00:59:09 Collecting future 00:59:09 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:59:09 Installing collected packages: pip, future 00:59:09 Attempting uninstall: pip 00:59:09 Found existing installation: pip 21.2.3 00:59:09 Uninstalling pip-21.2.3: 00:59:10 Successfully uninstalled pip-21.2.3 00:59:11 Successfully installed future-1.0.0 pip-25.0.1 00:59:11 + pip install markdown 00:59:12 Collecting markdown 00:59:12 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 00:59:12 Collecting importlib-metadata>=4.4 (from markdown) 00:59:12 Using cached importlib_metadata-8.6.1-py3-none-any.whl.metadata (4.7 kB) 00:59:12 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown) 00:59:12 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB) 00:59:12 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 00:59:12 Using cached importlib_metadata-8.6.1-py3-none-any.whl (26 kB) 00:59:12 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB) 00:59:12 Installing collected packages: zipp, importlib-metadata, markdown 00:59:12 Successfully installed importlib-metadata-8.6.1 markdown-3.7 zipp-3.21.0 00:59:12 + pip install reportlab 00:59:13 Collecting reportlab 00:59:13 Using cached reportlab-4.3.1-py3-none-any.whl.metadata (1.7 kB) 00:59:13 Collecting pillow>=9.0.0 (from reportlab) 00:59:13 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB) 00:59:13 Collecting chardet (from reportlab) 00:59:14 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:59:14 Using cached reportlab-4.3.1-py3-none-any.whl (1.9 MB) 00:59:14 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 00:59:14 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:59:14 Installing collected packages: pillow, chardet, reportlab 00:59:15 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.3.1 00:59:15 + pip install omego 00:59:16 Collecting omego 00:59:16 Using cached omego-0.7.0-py3-none-any.whl 00:59:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:59:16 Collecting yaclifw>=0.1.1 (from omego) 00:59:16 Using cached yaclifw-0.2.0-py3-none-any.whl 00:59:16 Collecting six (from yaclifw>=0.1.1->omego) 00:59:17 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 00:59:17 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 00:59:17 Installing collected packages: six, yaclifw, omego 00:59:17 Successfully installed omego-0.7.0 six-1.17.0 yaclifw-0.2.0 00:59:17 + pip install tables 00:59:17 Collecting tables 00:59:17 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:59:18 Collecting numpy>=1.19.0 (from tables) 00:59:18 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 00:59:18 Collecting numexpr>=2.6.2 (from tables) 00:59:18 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:59:18 Collecting packaging (from tables) 00:59:18 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB) 00:59:18 Collecting py-cpuinfo (from tables) 00:59:18 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:59:19 Collecting blosc2>=2.3.0 (from tables) 00:59:19 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:59:19 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:59:19 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) 00:59:19 Collecting msgpack (from blosc2>=2.3.0->tables) 00:59:19 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 00:59:19 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:59:19 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:59:19 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (396 kB) 00:59:19 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 00:59:20 Using cached packaging-24.2-py3-none-any.whl (65 kB) 00:59:20 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:59:20 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB) 00:59:20 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB) 00:59:20 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:59:23 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2 00:59:23 + pip install jinja2 00:59:24 Collecting jinja2 00:59:24 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 00:59:24 Collecting MarkupSafe>=2.0 (from jinja2) 00:59:24 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) 00:59:24 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 00:59:25 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB) 00:59:25 Installing collected packages: MarkupSafe, jinja2 00:59:25 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6 00:59:25 + pip install omero-py 00:59:26 Collecting omero-py 00:59:26 Using cached omero_py-5.19.6-py3-none-any.whl.metadata (6.4 kB) 00:59:26 Collecting urllib3<2 (from omero-py) 00:59:26 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 00:59:26 Collecting appdirs (from omero-py) 00:59:26 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:59:26 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:59:26 Collecting numpy<2 (from omero-py) 00:59:26 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:59:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.1.0) 00:59:26 Collecting PyYAML (from omero-py) 00:59:26 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:59:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:59:26 Collecting requests (from omero-py) 00:59:26 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 00:59:26 Collecting portalocker (from omero-py) 00:59:26 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB) 00:59:26 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:59:26 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) 00:59:27 Collecting idna<4,>=2.5 (from requests->omero-py) 00:59:27 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) 00:59:27 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:59:27 Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB) 00:59:27 Using cached omero_py-5.19.6-py3-none-any.whl (2.8 MB) 00:59:27 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:59:27 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:59:27 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:59:27 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 00:59:27 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 00:59:28 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:59:28 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) 00:59:28 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (146 kB) 00:59:28 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:59:28 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 00:59:28 Attempting uninstall: numpy 00:59:28 Found existing installation: numpy 2.0.2 00:59:28 Uninstalling numpy-2.0.2: 00:59:28 Successfully uninstalled numpy-2.0.2 00:59:33 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 numpy-1.26.4 omero-py-5.19.6 portalocker-3.1.1 requests-2.32.3 urllib3-1.26.20 00:59:33 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:59:33 Collecting omero-metadata 00:59:33 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-zd7vhuqy/omero-metadata_d9c68bbee8874a14a77c0e5e7770d8ec 00:59:34 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-zd7vhuqy/omero-metadata_d9c68bbee8874a14a77c0e5e7770d8ec 00:59:35 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit fcba3b96b926e436d2de71b276df714ab1bcd9e2 00:59:35 Installing build dependencies: started 00:59:38 Installing build dependencies: finished with status 'done' 00:59:38 Getting requirements to build wheel: started 00:59:39 Getting requirements to build wheel: finished with status 'done' 00:59:39 Preparing metadata (pyproject.toml): started 00:59:39 Preparing metadata (pyproject.toml): finished with status 'done' 00:59:39 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.6) 00:59:39 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 00:59:39 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.6) 00:59:39 Collecting pandas (from omero-metadata) 00:59:39 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) 00:59:39 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 00:59:39 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:59:39 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:59:39 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:59:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0) 00:59:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:59:39 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 00:59:39 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1) 00:59:39 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2) 00:59:39 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:59:39 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:59:39 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:59:39 Using cached pytz-2025.1-py2.py3-none-any.whl.metadata (22 kB) 00:59:39 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:59:39 Downloading tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB) 00:59:40 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 00:59:40 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1) 00:59:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) 00:59:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31) 00:59:40 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 00:59:40 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:59:40 Using cached pytz-2025.1-py2.py3-none-any.whl (507 kB) 00:59:40 Downloading tzdata-2025.2-py2.py3-none-any.whl (347 kB) 00:59:40 Building wheels for collected packages: omero-metadata 00:59:40 Building wheel for omero-metadata (pyproject.toml): started 00:59:40 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:59:40 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39281 sha256=6fe549026d5a40f11d73b52328de8d002446c6b5488748751a9c5d6503a4a5af 00:59:40 Stored in directory: /tmp/pip-ephem-wheel-cache-678uetgy/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:59:40 Successfully built omero-metadata 00:59:40 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:59:46 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.1 tzdata-2025.2 00:59:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:59:46 Collecting omero-cli-render 00:59:46 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-e7fpspol/omero-cli-render_b1fd0a8122cb423c8b9fcc4382c4e19c 00:59:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-e7fpspol/omero-cli-render_b1fd0a8122cb423c8b9fcc4382c4e19c 00:59:47 Running command git checkout -b merge_ci --track origin/merge_ci 00:59:47 Switched to a new branch 'merge_ci' 00:59:47 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:59:47 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit ca24a40fa642997e4bd077bdaa116d784dae3500 00:59:47 Installing build dependencies: started 00:59:49 Installing build dependencies: finished with status 'done' 00:59:49 Getting requirements to build wheel: started 00:59:49 Getting requirements to build wheel: finished with status 'done' 00:59:49 Preparing metadata (pyproject.toml): started 00:59:50 Preparing metadata (pyproject.toml): finished with status 'done' 00:59:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 00:59:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.6) 00:59:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 00:59:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:59:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:59:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:59:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0) 00:59:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:59:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 00:59:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1) 00:59:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1) 00:59:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) 00:59:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31) 00:59:50 Building wheels for collected packages: omero-cli-render 00:59:50 Building wheel for omero-cli-render (pyproject.toml): started 00:59:50 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:59:50 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19594 sha256=2019de4408506bcb5d8d681ae0f341f3865b0a6fc9984a6361949a043b9cbe1e 00:59:50 Stored in directory: /tmp/pip-ephem-wheel-cache-jngmqtds/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:59:50 Successfully built omero-cli-render 00:59:50 Installing collected packages: omero-cli-render 00:59:50 Successfully installed omero-cli-render-0.8.2.dev0 00:59:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:59:50 Collecting omero-cli-duplicate 00:59:50 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-mtxquuk5/omero-cli-duplicate_973df2383522488eab0f061b867ebdef 00:59:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-mtxquuk5/omero-cli-duplicate_973df2383522488eab0f061b867ebdef 00:59:51 Running command git checkout -b merge_ci --track origin/merge_ci 00:59:52 Switched to a new branch 'merge_ci' 00:59:52 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:59:52 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 880406ba4c7830451ebcde5b02ecf975c9ab68cc 00:59:52 Installing build dependencies: started 00:59:54 Installing build dependencies: finished with status 'done' 00:59:54 Getting requirements to build wheel: started 00:59:54 Getting requirements to build wheel: finished with status 'done' 00:59:54 Preparing metadata (pyproject.toml): started 00:59:54 Preparing metadata (pyproject.toml): finished with status 'done' 00:59:54 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6) 00:59:54 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 00:59:54 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:59:54 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:59:54 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:59:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0) 00:59:54 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 00:59:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:59:54 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 00:59:54 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1) 00:59:54 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1) 00:59:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) 00:59:54 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31) 00:59:54 Building wheels for collected packages: omero-cli-duplicate 00:59:54 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:59:54 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:59:54 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=d372e27e06309b6ac0dce0fb83daf757b55c0bf3fe0835767795a24ba4785dd4 00:59:54 Stored in directory: /tmp/pip-ephem-wheel-cache-2y98a1um/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:59:54 Successfully built omero-cli-duplicate 00:59:54 Installing collected packages: omero-cli-duplicate 00:59:54 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:59:55 + pip install omero-certificates 00:59:55 Collecting omero-certificates 00:59:55 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 00:59:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6) 00:59:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 00:59:55 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:59:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:59:55 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:59:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0) 00:59:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 00:59:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:59:55 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 00:59:55 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1) 00:59:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1) 00:59:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) 00:59:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31) 00:59:55 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 00:59:55 Installing collected packages: omero-certificates 00:59:56 Successfully installed omero-certificates-0.4.0 00:59:56 + for x in *.tar.gz 00:59:56 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:59:56 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:59:56 Installing build dependencies: started 00:59:58 Installing build dependencies: finished with status 'done' 00:59:58 Getting requirements to build wheel: started 00:59:58 Getting requirements to build wheel: finished with status 'done' 00:59:58 Preparing metadata (pyproject.toml): started 00:59:58 Preparing metadata (pyproject.toml): finished with status 'done' 00:59:58 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.6) 00:59:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 00:59:58 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:59:58 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:59:58 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 00:59:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0) 00:59:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 00:59:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:59:58 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 00:59:58 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1) 00:59:58 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1) 00:59:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) 00:59:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31) 00:59:58 Building wheels for collected packages: omero-dropbox 00:59:58 Building wheel for omero-dropbox (pyproject.toml): started 00:59:59 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:59:59 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=8b2cfe3de8474e8b60bd3626fe81480b0d4d8bb9eaff2cf725acd7f4ef71c403 00:59:59 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 00:59:59 Successfully built omero-dropbox 00:59:59 Installing collected packages: omero-dropbox 00:59:59 Successfully installed omero-dropbox-5.7.1.dev0 00:59:59 + for x in *.tar.gz 00:59:59 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:59:59 Processing ./omero_marshal-0.9.1.dev0.tar.gz 01:00:00 Installing build dependencies: started 01:00:02 Installing build dependencies: finished with status 'done' 01:00:02 Getting requirements to build wheel: started 01:00:02 Getting requirements to build wheel: finished with status 'done' 01:00:02 Preparing metadata (pyproject.toml): started 01:00:03 Preparing metadata (pyproject.toml): finished with status 'done' 01:00:03 Building wheels for collected packages: omero_marshal 01:00:03 Building wheel for omero_marshal (pyproject.toml): started 01:00:04 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 01:00:04 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=90d459664516f920216fdf46b695aefa8abee1f55a1f492aa53c7d1e5d73e3b3 01:00:04 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 01:00:04 Successfully built omero_marshal 01:00:04 Installing collected packages: omero_marshal 01:00:04 Successfully installed omero_marshal-0.9.1.dev0 01:00:04 + for x in *.tar.gz 01:00:04 + pip install -U omero_py-5.19.7.dev0.tar.gz 01:00:04 Processing ./omero_py-5.19.7.dev0.tar.gz 01:00:05 Installing build dependencies: started 01:00:06 Installing build dependencies: finished with status 'done' 01:00:07 Getting requirements to build wheel: started 01:00:07 Getting requirements to build wheel: finished with status 'done' 01:00:07 Preparing metadata (pyproject.toml): started 01:00:07 Preparing metadata (pyproject.toml): finished with status 'done' 01:00:07 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.20) 01:00:07 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.4.4) 01:00:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.0.0) 01:00:07 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.4) 01:00:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (11.1.0) 01:00:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (6.0.2) 01:00:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.6.5) 01:00:07 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (2.32.3) 01:00:07 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.1.1) 01:00:07 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.4.1) 01:00:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.10) 01:00:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (2025.1.31) 01:00:07 Building wheels for collected packages: omero-py 01:00:07 Building wheel for omero-py (pyproject.toml): started 01:00:08 Building wheel for omero-py (pyproject.toml): finished with status 'done' 01:00:08 Created wheel for omero-py: filename=omero_py-5.19.7.dev0-py3-none-any.whl size=2783224 sha256=92dd4710afbd8932f634f62ab9816b3ff6dcff1c194c9dac01f5d58647e9411f 01:00:08 Stored in directory: /home/omero/.cache/pip/wheels/f7/4b/64/80f70975ab0fd7430ae6a8e09a093688abe603abcb5090fc1b 01:00:08 Successfully built omero-py 01:00:09 Installing collected packages: omero-py 01:00:09 Attempting uninstall: omero-py 01:00:09 Found existing installation: omero-py 5.19.6 01:00:09 Uninstalling omero-py-5.19.6: 01:00:09 Successfully uninstalled omero-py-5.19.6 01:00:11 Successfully installed omero-py-5.19.7.dev0 01:00:11 + for x in *.tar.gz 01:00:11 + pip install -U omero_scripts-5.9.1.dev0.tar.gz 01:00:12 Processing ./omero_scripts-5.9.1.dev0.tar.gz 01:00:12 Installing build dependencies: started 01:00:14 Installing build dependencies: finished with status 'done' 01:00:14 Getting requirements to build wheel: started 01:00:14 Getting requirements to build wheel: finished with status 'done' 01:00:14 Preparing metadata (pyproject.toml): started 01:00:14 Preparing metadata (pyproject.toml): finished with status 'done' 01:00:14 Building wheels for collected packages: omero-scripts 01:00:14 Building wheel for omero-scripts (pyproject.toml): started 01:00:14 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 01:00:14 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136849 sha256=f89c59c24890a71c9af21928578e08defec6a2b72fc4284ae0f51a74d2c3dcf4 01:00:14 Stored in directory: /home/omero/.cache/pip/wheels/4d/ea/13/654c1b7c00351342c84d3e545702a0063ab8e12d260d83323c 01:00:14 Successfully built omero-scripts 01:00:14 Installing collected packages: omero-scripts 01:00:15 Successfully installed omero-scripts-5.9.1.dev0 01:00:15 + for x in *.tar.gz 01:00:15 + pip install -U omero_web-5.29.1.dev0.tar.gz 01:00:15 Processing ./omero_web-5.29.1.dev0.tar.gz 01:00:15 Installing build dependencies: started 01:00:17 Installing build dependencies: finished with status 'done' 01:00:17 Getting requirements to build wheel: started 01:00:17 Getting requirements to build wheel: finished with status 'done' 01:00:17 Preparing metadata (pyproject.toml): started 01:00:18 Preparing metadata (pyproject.toml): finished with status 'done' 01:00:18 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (5.19.7.dev0) 01:00:18 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0) 01:00:18 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 01:00:18 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0) 01:00:18 Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB) 01:00:19 Collecting django-pipeline (from omero-web==5.29.1.dev0) 01:00:19 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB) 01:00:19 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0) 01:00:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 01:00:19 Collecting django-csp (from omero-web==5.29.1.dev0) 01:00:19 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 01:00:19 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0) 01:00:19 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB) 01:00:19 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0) 01:00:19 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 01:00:19 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0) 01:00:19 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (11.1.0) 01:00:19 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (2025.1) 01:00:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (3.1.1) 01:00:19 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (24.2) 01:00:19 Collecting importlib-resources (from omero-web==5.29.1.dev0) 01:00:19 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 01:00:19 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) 01:00:19 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 01:00:19 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) 01:00:19 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) 01:00:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20) 01:00:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4) 01:00:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0) 01:00:19 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4) 01:00:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2) 01:00:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5) 01:00:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3) 01:00:19 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (53.0.0) 01:00:20 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0) 01:00:20 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 01:00:20 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.29.1.dev0) (3.21.0) 01:00:20 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) 01:00:20 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 01:00:20 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1) 01:00:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10) 01:00:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31) 01:00:20 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 01:00:20 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 01:00:20 Using cached Django-4.2.20-py3-none-any.whl (8.0 MB) 01:00:20 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 01:00:20 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB) 01:00:20 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 01:00:20 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB) 01:00:20 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 01:00:21 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 01:00:21 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) 01:00:21 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 01:00:21 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 01:00:21 Building wheels for collected packages: omero-web 01:00:21 Building wheel for omero-web (pyproject.toml): started 01:00:22 Building wheel for omero-web (pyproject.toml): finished with status 'done' 01:00:22 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817949 sha256=308fda65ea911e8ea1f67b70c4f0b7a97d40a68055d191124df56977b0de70e9 01:00:22 Stored in directory: /home/omero/.cache/pip/wheels/20/6a/be/a0eb92c362960a201e1b2f293382a92507134b48bed64ccadd 01:00:22 Successfully built omero-web 01:00:23 Installing collected packages: whitenoise, wheel, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, django-pipeline, asgiref, Django, django-csp, django-cors-headers, omero-web 01:00:26 Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 typing-extensions-4.12.2 wheel-0.45.1 whitenoise-6.9.0 01:00:26 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:00:28 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 01:00:28 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 01:00:28 --2025-03-24 01:00:28-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:00:28 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.110.133, ... 01:00:28 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. 01:00:28 HTTP request sent, awaiting response... 200 OK 01:00:28 Length: 115659 (113K) [text/plain] 01:00:28 Saving to: ‘Figure_To_Pdf.py’ 01:00:28 01:00:28 0K .......... .......... .......... .......... .......... 44% 3.33M 0s 01:00:28 50K .......... .......... .......... .......... .......... 88% 5.21M 0s 01:00:28 100K .......... .. 100% 149M=0.02s 01:00:28 01:00:28 2025-03-24 01:00:28 (4.57 MB/s) - ‘Figure_To_Pdf.py’ saved [115659/115659] 01:00:28 01:00:28 + chmod 755 Figure_To_Pdf.py 01:00:28 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 01:00:28 + omero config set omero.db.name OMERO-server 01:00:30 + omero config set omero.db.host pg 01:00:31 + omero config set omero.db.user postgres 01:00:32 + omero config set omero.data.dir /home/omero/omero-server-data 01:00:34 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 01:00:35 + omero config set omero.db.poolsize 25 01:00:37 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 01:00:38 + omero config set omero.security.trustStorePassword changeit 01:00:40 + omero config set omero.mail.config true 01:00:41 + omero config set omero.mail.from qa@openmicroscopy.org.uk 01:00:43 + omero config set omero.mail.host smtp.dundee.ac.uk 01:00:44 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 01:00:46 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 01:00:47 + omero certificates 01:00:48 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 01:00:48 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 01:00:49 + '[' false = true ']' 01:00:49 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 01:00:49 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 01:00:49 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 01:00:49 2025-03-24 01:00:49,423 [ omego.db] DEBUG dbcommand => upgrade 01:00:49 2025-03-24 01:00:49,423 [ omego.db] DEBUG dbhost => localhost 01:00:49 2025-03-24 01:00:49,423 [ omego.db] DEBUG dbname => OMERO-server 01:00:49 2025-03-24 01:00:49,424 [ omego.db] DEBUG dbpass => omero 01:00:49 2025-03-24 01:00:49,424 [ omego.db] DEBUG dbuser => omero 01:00:49 2025-03-24 01:00:49,424 [ omego.db] DEBUG rootpass => omero 01:00:49 2025-03-24 01:00:49,424 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 01:00:49 2025-03-24 01:00:49,424 [omego.extern] INFO Executing : omero version 01:00:50 OMERO.py version: 01:00:50 OMERO.server version: 01:00:50 5.6.3-548-bf8a6734d5-ice36 01:00:50 5.19.7.dev0 01:00:50 2025-03-24 01:00:50,968 [omego.extern] INFO Completed [1.544 s] 01:00:50 2025-03-24 01:00:50,968 [omego.extern] DEBUG Using omero CLI from omero 01:00:50 2025-03-24 01:00:50,968 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 01:00:50 2025-03-24 01:00:50,968 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:00:50 2025-03-24 01:00:50,968 [omego.extern] INFO Executing : omero config get --show-password 01:00:52 2025-03-24 01:00:52,394 [omego.extern] INFO Completed [1.425 s] 01:00:52 2025-03-24 01:00:52,394 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:00:52 2025-03-24 01:00:52,394 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 01:00:52 2025-03-24 01:00:52,956 [omego.extern] INFO Completed [0.562 s] 01:00:52 2025-03-24 01:00:52,957 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n' 01:00:52 2025-03-24 01:00:52,957 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4 01:00:52 01:00:52 2025-03-24 01:00:52,957 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:00:52 2025-03-24 01:00:52,957 [omego.extern] INFO Executing : omero config get --show-password 01:00:54 2025-03-24 01:00:54,389 [omego.extern] INFO Completed [1.433 s] 01:00:54 2025-03-24 01:00:54,390 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:00:54 2025-03-24 01:00:54,390 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 01:00:54 2025-03-24 01:00:54,559 [omego.extern] INFO Completed [0.169 s] 01:00:54 2025-03-24 01:00:54,559 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n' 01:00:54 2025-03-24 01:00:54,559 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:00:54 2025-03-24 01:00:54,559 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:00:54 2025-03-24 01:00:54,559 [omego.extern] INFO Executing : omero config get --show-password 01:00:55 2025-03-24 01:00:55,935 [omego.extern] INFO Completed [1.376 s] 01:00:55 2025-03-24 01:00:55,936 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:00:55 2025-03-24 01:00:55,936 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:00:56 2025-03-24 01:00:56,264 [omego.extern] INFO Completed [0.328 s] 01:00:56 2025-03-24 01:00:56,264 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 01:00:56 2025-03-24 01:00:56,264 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 01:00:56 2025-03-24 01:00:56,266 [ omego.db] INFO Database is already at OMERO5.4__0 01:00:56 + export LANG=en_US.UTF-8 01:00:56 + LANG=en_US.UTF-8 01:00:56 + export LANGUAGE=en_US:en 01:00:56 + LANGUAGE=en_US:en 01:00:56 + export LC_ALL=en_US.UTF-8 01:00:56 + LC_ALL=en_US.UTF-8 01:00:56 + BUILD_ID=DONT_KILL_ME 01:00:56 + omero admin start 01:01:06 No descriptor given. Using etc/grid/default.xml 01:01:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 01:01:17 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 01:01:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 01:01:17 Waiting on startup. Use CTRL-C to exit 01:01:17 + omero admin waitup 01:01:19 Waiting on startup. Use CTRL-C to exit 01:01:19 + omero admin diagnostics 01:01:21 01:01:21 ================================================================================ 01:01:21 OMERO Diagnostics (admin) 01:01:21 ================================================================================ 01:01:21 01:01:21 Commands: java -version 11.0.24 (/usr/bin/java) 01:01:21 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 01:01:21 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 01:01:21 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 01:01:22 Commands: psql --version 16.4 (/usr/bin/psql) 01:01:22 Commands: openssl version 3.0.71 (/usr/bin/openssl) 01:01:22 01:01:22 Component: OMERO.py 5.19.7.dev0 01:01:22 Component: OMERO.server 5.6.3-548-bf8a6734d5-ice36 01:01:22 01:01:22 Server: icegridnode running 01:01:22 Server: Blitz-0 active (pid = 16251, enabled) 01:01:22 Server: Indexer-0 activating (enabled) 01:01:22 Server: OMERO.Glacier2 active (pid = 16278, enabled) 01:01:22 Server: OMERO.IceStorm active (pid = 16285, enabled) 01:01:22 Server: Processor-0 active (pid = 16301, enabled) 01:01:22 Server: Tables-0 active (pid = 16316, enabled) 01:01:22 01:01:22 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 01:01:22 Log files: Blitz-0.log 32.9 KB errors=0 warnings=1 01:01:22 Log files: DropBox.log n/a 01:01:22 Log files: FileServer.log n/a 01:01:22 Log files: Indexer-0.log 478 B 01:01:22 Log files: MonitorServer.log n/a 01:01:22 Log files: Processor-0.log 735 B 01:01:22 Log files: Tables-0.log 961 B 01:01:22 Log files: TestDropBox.log n/a 01:01:22 Log files: master.err 24.9 KB 01:01:22 Log files: master.out 30.5 KB 01:01:22 Log files: Total size 0.09 MB 01:01:22 01:01:22 01:01:22 Environment:OMERO_HOME=(unset) 01:01:22 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:01:22 Environment:OMERO_NODE=(unset) 01:01:22 Environment:OMERO_MASTER=(unset) 01:01:22 Environment:OMERO_USERDIR=(unset) 01:01:22 Environment:OMERO_TMPDIR=(unset) 01:01:22 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:01:22 Environment:PYTHONPATH=(unset) 01:01:22 Environment:ICE_HOME=/opt/ice-3.6.5 01:01:22 Environment:LD_LIBRARY_PATH=(unset) 01:01:22 Environment:DYLD_LIBRARY_PATH=(unset) 01:01:22 01:01:22 OMERO SSL port:4064 01:01:22 OMERO TCP port:4063 01:01:22 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 01:01:22 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 01:01:22 01:01:22 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:01:22 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:01:22 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:01:22 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:01:22 01:01:22 Jar: lib/server/formats-api.jar Bio-Formats API 8.2.0-SNAPSHOT 24 March 2025 9e0a39ae6d330017c9af71e1ad0f318df9487160 01:01:22 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.2.0-SNAPSHOT 24 March 2025 9e0a39ae6d330017c9af71e1ad0f318df9487160 01:01:22 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.2.0-SNAPSHOT 24 March 2025 9e0a39ae6d330017c9af71e1ad0f318df9487160 01:01:22 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 24 March 2025 aa77f4df8ce11567350a5520ef13d995d7d79adc 01:01:22 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 24 March 2025 aa77f4df8ce11567350a5520ef13d995d7d79adc 01:01:22 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 24 March 2025 aa77f4df8ce11567350a5520ef13d995d7d79adc 01:01:22 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 24 March 2025 aa77f4df8ce11567350a5520ef13d995d7d79adc 01:01:22 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 24 March 2025 aa77f4df8ce11567350a5520ef13d995d7d79adc 01:01:22 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 24 March 2025 aa77f4df8ce11567350a5520ef13d995d7d79adc 01:01:22 Jar: lib/server/omero-blitz.jar jar 5.8.2-SNAPSHOT 01:01:22 Jar: lib/server/omero-common.jar jar 5.7.2-SNAPSHOT 01:01:22 Jar: lib/server/omero-gateway.jar jar 5.10.2-SNAPSHOT 01:01:22 Jar: lib/server/omero-model.jar jar 5.7.2-SNAPSHOT 01:01:22 Jar: lib/server/omero-renderer.jar jar 5.6.2-SNAPSHOT 01:01:22 Jar: lib/server/omero-romio.jar jar 5.8.2-SNAPSHOT 01:01:22 Jar: lib/server/omero-server.jar jar 5.7.2-SNAPSHOT 01:01:22 + deactivate 01:01:22 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:01:22 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:01:22 + export PATH 01:01:22 + unset _OLD_VIRTUAL_PATH 01:01:22 + '[' -n '' ']' 01:01:22 + '[' -n /bin/bash -o -n '' ']' 01:01:22 + hash -r 01:01:22 + '[' -n '' ']' 01:01:22 + unset VIRTUAL_ENV 01:01:22 + '[' '!' '' = nondestructive ']' 01:01:22 + unset -f deactivate 01:01:22 Finished: SUCCESS