Started by user devspace Running as SYSTEM Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server [OMERO-server] $ /bin/bash -xe /tmp/jenkins647194207182309606.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERO_DATA_DIR=/home/omero/omero-server-data + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + omero admin stop Server not running + echo not running not running + sleep 5 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + '[' -n /bin/bash -o -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + '[' '!' '' = nondestructive ']' + unset -f deactivate + rm -rf /home/omero/workspace/OMERO-server/.venv3 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo' Skipping PURGE_DATA:CleanDbAndRepo + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.2-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.7.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties Copied 1 artifact from "OMERO-build" build number 364 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 351 Copied 2 artifacts from "OMERO-build-build" build number 379 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4541222240477736774.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DATA_DIR=/home/omero/omero-server-data + mkdir -p /home/omero/omero-server-data + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties ++ ls OMERO.server-5.6.3-546-563cb21b2c-ice36-b364.zip + ZIP=OMERO.server-5.6.3-546-563cb21b2c-ice36-b364.zip + '[' '!' -z '' ']' + DIST=OMERO.server-5.6.3-546-563cb21b2c-ice36-b364 + unzip OMERO.server-5.6.3-546-563cb21b2c-ice36-b364.zip Archive: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364.zip creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/blitz/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/grid/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/profiles/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/error/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/grid/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/luts/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/luts/janelia/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/luts/matplotlib/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/luts/ncsa_paledit/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/luts/seaborn/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/luts/wcif/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/omero/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/omero/analysis_scripts/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/omero/annotation_scripts/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/omero/export_scripts/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/omero/figure_scripts/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/omero/import_scripts/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/scripts/omero/util_scripts/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/misc/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__1/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__10/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__11/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__2/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__3/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__4/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__5/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__6/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__7/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__8/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__9/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__4/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__5/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__6/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__7/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.1__0/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/t/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.3__0/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.4__0/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4__0/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.0__0/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.2__0/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__1/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__2/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__3/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/ creating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/var/ inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/LICENSE.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/backup.cfg inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/blitz/mail-senders.example inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/blitz/mail-server.example inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/build.properties inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/env.bat inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/env.sh inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/hibernate.properties inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/ice.config inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/logback-cli.xml inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/logback-indexing-cli.xml inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/logback-indexing.xml inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/logback.xml inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/mime.types inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/node1.cfg inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/node2.cfg inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/omero.properties inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/profiles/psql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/rollover.cfg inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/Windows.cfg inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/error/maintainance.html inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/grid/README inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/grid/default.xml inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/grid/templates.xml inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/grid/windefault.xml inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/ice.config inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/internal.cfg inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/master.cfg inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/templates/robot.template inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/etc/testdropbox.config inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/history.rst inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/OMEZarrReader.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/activation.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/aggdesigner-algorithm.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/aircompressor.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/annotations.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/antlr.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/aopalliance.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/avatica-core.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/avatica-metrics.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/aws-java-sdk-core.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/aws-java-sdk-kms.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/aws-java-sdk-s3.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/base.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-all.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-anim.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-awt-util.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-bridge.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-codec.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-constants.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-css.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-dom.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-ext.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-extension.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-gui-util.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-gvt.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-i18n.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-parser.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-rasterizer-ext.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-rasterizer.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-script.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-slideshow.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-squiggle-ext.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-squiggle.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-svg-dom.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-svgbrowser.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-svggen.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-svgpp.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-svgrasterizer.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-swing.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-transcoder.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-ttf2svg.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-util.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/batik-xml.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/btm.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/bufr.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/c3p0.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/calcite-core.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/calcite-linq4j.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/cdm-core.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/checker-qual.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/commons-beanutils.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/commons-codec.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/commons-collections.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/commons-collections4.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/client/commons-compiler.jar inflating: 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OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/ome-poi.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/ome-xml.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/omero-blitz.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/omero-common.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/omero-gateway.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/omero-model.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/omero-renderer.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/omero-romio.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/omero-server.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/pdfbox.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/perf4j.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/postgresql.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/protobuf-java.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/quartz.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/re2j.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/reflectasm.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/rhino.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/serializer.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/sketches-core.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/slf4j-api.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/snakeyaml.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/solr-analysis-extras.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/solr-commons-csv.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/solr-core.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/solr-solrj.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/specification.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-aop.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-beans.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-context-support.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-context.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-core.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-expression.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-jdbc.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-jms.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-ldap-core.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-messaging.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-orm.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-security-core.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-security-ldap.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/spring-tx.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/sqlite-jdbc.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/subethasmtp.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/turbojpeg.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/udunits.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/xalan.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/xercesImpl.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/xml-apis-ext.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/xml-apis.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/xmlgraphics-commons.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/xmpcore.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/lib/server/xpp3.jar inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/README inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/agpl.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/antlr.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/apache-v1.1.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/apache-v2.0.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/asm.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/bouncy_castle_license.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/bsd.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/cddl-v1.0.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/cpl-v10.html inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/crystalclear.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/django.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/dom4j.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/epl-v1.0.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/fbsd.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/freemarker.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/gpl-v2.0.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/gpl.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/gtest.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/iconsweets_license.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/jamon.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/jmock.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/jquery.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/jtidy.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/lgpl-3.0.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/lgpl-v2.0.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/lgpl-v2.1.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/lgpl-v3.0.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/lgpl.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/matplotlib.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/mit.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/mpl-v1_0.htm inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/npl-1_1.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/path.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/pil.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/postgresql.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/psf-v2.0.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/psf-v2.5.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/scons.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/slf4j.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/tablelayout.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/which.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/zlib-libpng.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/share/licenses/zpl-v2.1.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/README.txt inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/misc/Makefile inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/misc/current.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/misc/enums.py inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__1/OMERO3__7.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__10/OMERO3A__9.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__11/OMERO3A__10.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__11/OMERO3A__5.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__2/OMERO3A__1.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__3/OMERO3A__2.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__3/OMERO3__5.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__4/OMERO3A__3.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__4/OMERO3__5.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__5/OMERO3A__4.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__6/OMERO3A__5.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__7/OMERO3A__6.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__8/OMERO3A__6.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__9/OMERO3A__8.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__4/OMERO3__1.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__5/OMERO3__4.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__6/OMERO3__5.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__7/OMERO3__6.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.1__0/OMERO4__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.3__0/OMERO4.2__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.4__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.4__0/OMERO4.3__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4__0/OMERO3A__11.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.0__0/OMERO4.4__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/OMERO5.1__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.2__0/OMERO5.1__1.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/OMERO5.2__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/delete-ns-orphans.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.3__0.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.3__1.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/psql-footer.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/psql-header.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/schema.sql inflating: OMERO.server-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/views.sql + rm -f OMERO.server-5.6.3-546-563cb21b2c-ice36-b364.zip + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-546-563cb21b2c-ice36-b364 /home/omero/workspace/OMERO-server/OMERO.server + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + pip install -U pip Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.0.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.0.1 WARNING: There was an error checking the latest version of pip. + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 22.4 MB/s eta 0:00:00 Installing collected packages: zeroc-ice Successfully installed zeroc-ice-3.6.5 + pip install markdown Collecting markdown Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) Using cached Markdown-3.7-py3-none-any.whl (106 kB) Installing collected packages: markdown Successfully installed markdown-3.7 + pip install reportlab Collecting reportlab Using cached reportlab-4.3.1-py3-none-any.whl.metadata (1.7 kB) Collecting pillow>=9.0.0 (from reportlab) Downloading pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.1 kB) Collecting chardet (from reportlab) Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) Using cached reportlab-4.3.1-py3-none-any.whl (1.9 MB) Downloading pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 22.3 MB/s eta 0:00:00 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) Installing collected packages: pillow, chardet, reportlab Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.3.1 + pip install omego Collecting omego Using cached omego-0.7.0.tar.gz (31 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting future (from omego) Downloading future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting yaclifw>=0.1.1 (from omego) Using cached yaclifw-0.2.0.tar.gz (13 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting six (from yaclifw>=0.1.1->omego) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Downloading future-1.0.0-py3-none-any.whl (491 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Building wheels for collected packages: omego, yaclifw Building wheel for omego (pyproject.toml): started Building wheel for omego (pyproject.toml): finished with status 'done' Created wheel for omego: filename=omego-0.7.0-py3-none-any.whl size=35933 sha256=6f00aa82e21fb50123dd2ca49f292376ec58470b8790cb189aaf3546fa005f5d Stored in directory: /home/omero/.cache/pip/wheels/b2/03/f4/41da37f9fd03492f25c76713ad3afb5039979f91de90c3cea4 Building wheel for yaclifw (pyproject.toml): started Building wheel for yaclifw (pyproject.toml): finished with status 'done' Created wheel for yaclifw: filename=yaclifw-0.2.0-py3-none-any.whl size=14689 sha256=3b2a3e0a6739516b57d69698a9b86549701e981598267d7b347e60a4e7c4f673 Stored in directory: /home/omero/.cache/pip/wheels/65/14/90/3ee93d92964646dc1f6990630191b41765be2582811bce72ac Successfully built omego yaclifw Installing collected packages: six, future, yaclifw, omego Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 + pip install tables Collecting tables Downloading tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) Collecting numpy>=1.20.0 (from tables) Downloading numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB) Collecting numexpr>=2.6.2 (from tables) Downloading numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) Collecting packaging (from tables) Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB) Collecting py-cpuinfo (from tables) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting blosc2>=2.3.0 (from tables) Downloading blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB) Collecting typing-extensions>=4.4.0 (from tables) Using cached typing_extensions-4.13.0-py3-none-any.whl.metadata (3.0 kB) Collecting ndindex (from blosc2>=2.3.0->tables) Downloading ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) Collecting msgpack (from blosc2>=2.3.0->tables) Downloading msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) Collecting platformdirs (from blosc2>=2.3.0->tables) Downloading platformdirs-4.3.7-py3-none-any.whl.metadata (11 kB) Collecting requests (from blosc2>=2.3.0->tables) Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) Collecting charset-normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables) Downloading charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) Downloading urllib3-2.3.0-py3-none-any.whl.metadata (6.5 kB) Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB) Downloading tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.5/7.5 MB 22.9 MB/s eta 0:00:00 Downloading blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.4/4.4 MB 22.6 MB/s eta 0:00:00 Downloading numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (398 kB) Downloading numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.4/16.4 MB 18.5 MB/s eta 0:00:00 Using cached typing_extensions-4.13.0-py3-none-any.whl (45 kB) Using cached packaging-24.2-py3-none-any.whl (65 kB) Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) Downloading msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB) Downloading ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (506 kB) Downloading platformdirs-4.3.7-py3-none-any.whl (18 kB) Using cached requests-2.32.3-py3-none-any.whl (64 kB) Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) Downloading charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Downloading urllib3-2.3.0-py3-none-any.whl (128 kB) Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, charset-normalizer, certifi, requests, numexpr, blosc2, tables Successfully installed blosc2-3.2.1 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.2.4 packaging-24.2 platformdirs-4.3.7 py-cpuinfo-9.0.0 requests-2.32.3 tables-3.10.2 typing-extensions-4.13.0 urllib3-2.3.0 + pip install jinja2 Collecting jinja2 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) Collecting MarkupSafe>=2.0 (from jinja2) Downloading MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) Downloading MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Installing collected packages: MarkupSafe, jinja2 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6 + pip install omero-py Collecting omero-py Downloading omero_py-5.19.8-py3-none-any.whl.metadata (6.5 kB) Collecting urllib3<2 (from omero-py) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting appdirs (from omero-py) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) Collecting numpy<2 (from omero-py) Downloading numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.1.0) Collecting PyYAML (from omero-py) Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.3) Collecting portalocker (from omero-py) Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.1.31) Downloading omero_py-5.19.8-py3-none-any.whl (2.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 22.1 MB/s eta 0:00:00 Downloading numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.3/18.3 MB 23.3 MB/s eta 0:00:00 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 763.0/763.0 kB 26.6 MB/s eta 0:00:00 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, omero-py Attempting uninstall: urllib3 Found existing installation: urllib3 2.3.0 Uninstalling urllib3-2.3.0: Successfully uninstalled urllib3-2.3.0 Attempting uninstall: numpy Found existing installation: numpy 2.2.4 Uninstalling numpy-2.2.4: Successfully uninstalled numpy-2.2.4 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 urllib3-1.26.20 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata Collecting omero-metadata Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-9zshq_p1/omero-metadata_1f2f5f1a10bf4530a699b4e098410711 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-9zshq_p1/omero-metadata_1f2f5f1a10bf4530a699b4e098410711 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 1554fbdb4fd5f2267504b033134dccae7713ff43 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.19.8) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2) Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) Collecting pandas (from omero-metadata) Downloading pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1) Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2) Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting pytz>=2020.1 (from pandas->omero-metadata) Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas->omero-metadata) Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31) Downloading pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.1/13.1 MB 23.0 MB/s eta 0:00:00 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB) Building wheels for collected packages: omero-metadata Building wheel for omero-metadata (pyproject.toml): started Building wheel for omero-metadata (pyproject.toml): finished with status 'done' Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39281 sha256=3deb814227e5e2bf2bf4d78b017226a8922aa7a8cc292b9323b949eb9faa0c73 Stored in directory: /tmp/pip-ephem-wheel-cache-sv9j9bw_/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b Successfully built omero-metadata Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.2 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render Collecting omero-cli-render Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-c98idobm/omero-cli-render_19d0d629e71a4f3c9d6addcaeaa7f461 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-c98idobm/omero-cli-render_19d0d629e71a4f3c9d6addcaeaa7f461 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit fe523d079ef7f2d10379260aef54236d824dafe6 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.19.8) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31) Building wheels for collected packages: omero-cli-render Building wheel for omero-cli-render (pyproject.toml): started Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19592 sha256=5e48f2be3178fcdcc1f73c8de65390acf067c58d1ebab5060b895fdfc715ebc8 Stored in directory: /tmp/pip-ephem-wheel-cache-k3i3zmbc/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee Successfully built omero-cli-render Installing collected packages: omero-cli-render Successfully installed omero-cli-render-0.8.2.dev0 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate Collecting omero-cli-duplicate Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-mrg64gpy/omero-cli-duplicate_15fb95a76665474d8508155996424231 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-mrg64gpy/omero-cli-duplicate_15fb95a76665474d8508155996424231 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 87e4661edd3fd9db4f6c3476fce4d3e9d0f9a6eb Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.19.8) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31) Building wheels for collected packages: omero-cli-duplicate Building wheel for omero-cli-duplicate (pyproject.toml): started Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=315c9f7c53271b9fce3b31a498b59ef98b2b02b39283d046949d85922a17fcef Stored in directory: /tmp/pip-ephem-wheel-cache-s01d4ovx/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 Successfully built omero-cli-duplicate Installing collected packages: omero-cli-duplicate Successfully installed omero-cli-duplicate-0.4.1.dev0 + pip install omero-certificates Collecting omero-certificates Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.19.8) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31) Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) Installing collected packages: omero-certificates Successfully installed omero-certificates-0.4.0 + for x in *.tar.gz + pip install -U omero_dropbox-5.7.1.dev0.tar.gz Processing ./omero_dropbox-5.7.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.8) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31) Building wheels for collected packages: omero-dropbox Building wheel for omero-dropbox (pyproject.toml): started Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49141 sha256=998f10f1d4d579444862a7e93e693d0e235854417850ce4bdccc8e17e6996a2f Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 Successfully built omero-dropbox Installing collected packages: omero-dropbox Successfully installed omero-dropbox-5.7.1.dev0 + for x in *.tar.gz + pip install -U omero_marshal-0.9.1.dev0.tar.gz Processing ./omero_marshal-0.9.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero_marshal Building wheel for omero_marshal (pyproject.toml): started Building wheel for omero_marshal (pyproject.toml): finished with status 'done' Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88125 sha256=59c0c66f82053869bc08cec82254a0868a11f550e5125e58ebc0b75627658bf2 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18 Successfully built omero_marshal Installing collected packages: omero_marshal Successfully installed omero_marshal-0.9.1.dev0 + for x in *.tar.gz + pip install -U omero_py-5.19.7.dev0.tar.gz Processing ./omero_py-5.19.7.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.7.dev0) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.7.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.7.dev0) (1.0.0) Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.7.dev0) (1.26.4) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.7.dev0) (11.1.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.7.dev0) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.7.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.7.dev0) (2.32.3) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.7.dev0) (3.1.1) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.19.7.dev0) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.19.7.dev0) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.19.7.dev0) (2025.1.31) Building wheels for collected packages: omero-py Building wheel for omero-py (pyproject.toml): started Building wheel for omero-py (pyproject.toml): finished with status 'done' Created wheel for omero-py: filename=omero_py-5.19.7.dev0-py3-none-any.whl size=2783215 sha256=c7c0a46195a96b1c3c2dd6ecd40362e43af1433bc3f7742a03132007deb4376d Stored in directory: /home/omero/.cache/pip/wheels/eb/8c/04/f318a5eb090ab6b6ffef552f576d410bf91bfa0ac7f3b8758b Successfully built omero-py Installing collected packages: omero-py Attempting uninstall: omero-py Found existing installation: omero-py 5.19.8 Uninstalling omero-py-5.19.8: Successfully uninstalled omero-py-5.19.8 Successfully installed omero-py-5.19.7.dev0 + for x in *.tar.gz + pip install -U omero_scripts-5.9.1.dev0.tar.gz Processing ./omero_scripts-5.9.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero-scripts Building wheel for omero-scripts (pyproject.toml): started Building wheel for omero-scripts (pyproject.toml): finished with status 'done' Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136848 sha256=0722c9c3422cecf8e85146c4aa1622d4458db92e4304aae2824a4e3c8bcb018c Stored in directory: /home/omero/.cache/pip/wheels/5d/64/64/66c19773daf66dee2b16f9ebd49fde08680f277d4fff67beed Successfully built omero-scripts Installing collected packages: omero-scripts Successfully installed omero-scripts-5.9.1.dev0 + for x in *.tar.gz + pip install -U omero_web-5.29.1.dev0.tar.gz Processing ./omero_web-5.29.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.19.7.dev0) Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0) Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0) Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB) Collecting django-pipeline (from omero-web==5.29.1.dev0) Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB) Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0) Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) Collecting django-csp (from omero-web==5.29.1.dev0) Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0) Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB) Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0) Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0) Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.1.0) Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1) Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (24.2) Collecting importlib-resources (from omero-web==5.29.1.dev0) Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0) Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3) Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (65.5.1) Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0) Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31) Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) Using cached Django-4.2.20-py3-none-any.whl (8.0 MB) Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB) Using cached django_csp-3.8-py3-none-any.whl (17 kB) Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB) Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) Using cached wheel-0.45.1-py3-none-any.whl (72 kB) Building wheels for collected packages: omero-web Building wheel for omero-web (pyproject.toml): started Building wheel for omero-web (pyproject.toml): finished with status 'done' Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817949 sha256=00d0d77adff160e1bb6f97677e2de4904069162f7c501c031819733930748773 Stored in directory: /home/omero/.cache/pip/wheels/b6/72/73/a29488e9ae7a2242fcfdc532a2c6f9884a34cc378eb261962a Successfully built omero-web Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. --2025-03-28 10:48:59-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.111.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 121749 (119K) [text/plain] Saving to: ‘Figure_To_Pdf.py’ 0K .......... .......... .......... .......... .......... 42% 3.49M 0s 50K .......... .......... .......... .......... .......... 84% 5.12M 0s 100K .......... ........ 100% 34.6M=0.02s 2025-03-28 10:49:00 (4.83 MB/s) - ‘Figure_To_Pdf.py’ saved [121749/121749] + chmod 755 Figure_To_Pdf.py + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts + omero config set omero.db.name OMERO-server + omero config set omero.db.host pg + omero config set omero.db.user postgres + omero config set omero.data.dir /home/omero/omero-server-data + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% + omero config set omero.db.poolsize 25 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts + omero config set omero.security.trustStorePassword changeit + omero config set omero.mail.config true + omero config set omero.mail.from qa@openmicroscopy.org.uk + omero config set omero.mail.host smtp.dundee.ac.uk + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' + omero certificates OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024) certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 2025-03-28 10:49:20,127 [ omego.db] DEBUG dbcommand => upgrade 2025-03-28 10:49:20,127 [ omego.db] DEBUG dbhost => localhost 2025-03-28 10:49:20,127 [ omego.db] DEBUG dbname => OMERO-server 2025-03-28 10:49:20,127 [ omego.db] DEBUG dbpass => omero 2025-03-28 10:49:20,127 [ omego.db] DEBUG dbuser => omero 2025-03-28 10:49:20,128 [ omego.db] DEBUG rootpass => omero 2025-03-28 10:49:20,128 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 2025-03-28 10:49:20,128 [omego.extern] INFO Executing : omero version OMERO.py version: OMERO.server version: 5.6.3-546-563cb21b2c-ice36-b364 5.19.7.dev0 2025-03-28 10:49:21,541 [omego.extern] INFO Completed [1.413 s] 2025-03-28 10:49:21,541 [omego.extern] DEBUG Using omero CLI from omero 2025-03-28 10:49:21,541 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 2025-03-28 10:49:21,541 [omego.extern] INFO Running [current environment]: omero config get --show-password 2025-03-28 10:49:21,541 [omego.extern] INFO Executing : omero config get --show-password 2025-03-28 10:49:23,040 [omego.extern] INFO Completed [1.498 s] 2025-03-28 10:49:23,040 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2025-03-28 10:49:23,040 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 2025-03-28 10:49:23,569 [omego.extern] INFO Completed [0.529 s] 2025-03-28 10:49:23,569 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.8\n' 2025-03-28 10:49:23,570 [ omego.db] INFO psql version: psql (PostgreSQL) 16.8 2025-03-28 10:49:23,570 [omego.extern] INFO Running [current environment]: omero config get --show-password 2025-03-28 10:49:23,570 [omego.extern] INFO Executing : omero config get --show-password 2025-03-28 10:49:24,934 [omego.extern] INFO Completed [1.364 s] 2025-03-28 10:49:24,934 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2025-03-28 10:49:24,934 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 2025-03-28 10:49:25,204 [omego.extern] INFO Completed [0.270 s] 2025-03-28 10:49:25,204 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n' 2025-03-28 10:49:25,204 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2025-03-28 10:49:25,204 [omego.extern] INFO Running [current environment]: omero config get --show-password 2025-03-28 10:49:25,204 [omego.extern] INFO Executing : omero config get --show-password 2025-03-28 10:49:26,427 [omego.extern] INFO Completed [1.223 s] 2025-03-28 10:49:26,428 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2025-03-28 10:49:26,428 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2025-03-28 10:49:27,264 [omego.extern] INFO Completed [0.836 s] 2025-03-28 10:49:27,264 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 2025-03-28 10:49:27,264 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 2025-03-28 10:49:27,266 [ omego.db] INFO Database is already at OMERO5.4__0 + export LANG=en_US.UTF-8 + LANG=en_US.UTF-8 + export LANGUAGE=en_US:en + LANGUAGE=en_US:en + export LC_ALL=en_US.UTF-8 + LC_ALL=en_US.UTF-8 + BUILD_ID=DONT_KILL_ME + omero admin start WARNING: lock files in /home/omero/omero-server-data ---------------------------------------- /home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock ---------------------------------------- You may want to stop all server processes and remove these files manually. Lock files can remain after an abrupt server outage and are especially frequent on remotely mounted filesystems like NFS. No descriptor given. Using etc/grid/default.xml Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry Waiting on startup. Use CTRL-C to exit + omero admin waitup Waiting on startup. Use CTRL-C to exit + omero admin diagnostics ================================================================================ OMERO Diagnostics (admin) ================================================================================ Commands: java -version 11.0.25 (/usr/bin/java) Commands: python -V 3.11.9 (/home/omero/workspace/OMERO-server/.venv3/bin/python) Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) Commands: psql --version 16.8 (/usr/bin/psql) Commands: openssl version 3.2.24 (/usr/bin/openssl) Component: OMERO.py 5.19.7.dev0 Component: OMERO.server 5.6.3-546-563cb21b2c-ice36-b364 Server: icegridnode running Server: Blitz-0 active (pid = 2682, enabled) Server: Indexer-0 activating (enabled) Server: OMERO.Glacier2 active (pid = 2710, enabled) Server: OMERO.IceStorm active (pid = 2741, enabled) Server: Processor-0 activating (enabled) Server: Tables-0 activating (enabled) Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists Log files: Blitz-0.log 13.8 KB errors=0 warnings=1 Log files: DropBox.log n/a Log files: FileServer.log n/a Log files: Indexer-0.log 2.1 KB Log files: MonitorServer.log n/a Log files: Processor-0.log 592 B Log files: Tables-0.log 842 B Log files: TestDropBox.log n/a Log files: master.err 25.8 KB Log files: master.out 30.5 KB Log files: Total size 0.07 MB Environment:OMERO_HOME=(unset) Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server Environment:OMERO_NODE=(unset) Environment:OMERO_MASTER=(unset) Environment:OMERO_USERDIR=(unset) Environment:OMERO_TMPDIR=(unset) Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Environment:PYTHONPATH=(unset) Environment:ICE_HOME=/opt/ice-3.6.5 Environment:LD_LIBRARY_PATH=(unset) Environment:DYLD_LIBRARY_PATH=(unset) OMERO SSL port:4064 OMERO TCP port:4063 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions Jar: lib/server/formats-api.jar Bio-Formats API 8.2.0-SNAPSHOT 28 March 2025 ed42ad1a3fa1574aea40542e60bb276af8688677 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.2.0-SNAPSHOT 28 March 2025 ed42ad1a3fa1574aea40542e60bb276af8688677 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.2.0-SNAPSHOT 28 March 2025 ed42ad1a3fa1574aea40542e60bb276af8688677 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe Jar: lib/server/omero-blitz.jar jar 5.8.2-SNAPSHOT Jar: lib/server/omero-common.jar jar 5.7.3-SNAPSHOT Jar: lib/server/omero-gateway.jar jar 5.10.2-SNAPSHOT Jar: lib/server/omero-model.jar jar 5.7.3-SNAPSHOT Jar: lib/server/omero-renderer.jar jar 5.6.3-SNAPSHOT Jar: lib/server/omero-romio.jar jar 5.8.3-SNAPSHOT Jar: lib/server/omero-server.jar jar 5.7.2-SNAPSHOT + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate Finished: SUCCESS