01:16:35 Started by upstream project "Trigger" build number 426 01:16:35 originally caused by: 01:16:35 Started by timer 01:16:35 Running as SYSTEM 01:16:35 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 01:16:35 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12854661250513896786.sh 01:16:35 + source /home/settings.env 01:16:35 ++ OMERO_DB_HOST=pg 01:16:35 ++ OMERO_DB_USER=postgres 01:16:35 ++ OMERO_DB_PASS= 01:16:35 ++ OMERO_ROOT_PASS=omero 01:16:35 ++ OMERO_DATA_DIR=/OMERO 01:16:35 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:16:35 + OMERO_DB_NAME=OMERO-server 01:16:35 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:16:35 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:16:35 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:16:35 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:16:35 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 01:16:35 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:16:35 ++ deactivate nondestructive 01:16:35 ++ '[' -n '' ']' 01:16:35 ++ '[' -n '' ']' 01:16:35 ++ hash -r 01:16:35 ++ '[' -n '' ']' 01:16:35 ++ unset VIRTUAL_ENV 01:16:35 ++ unset VIRTUAL_ENV_PROMPT 01:16:35 ++ '[' '!' nondestructive = nondestructive ']' 01:16:35 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:16:35 ++ export VIRTUAL_ENV 01:16:35 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:16:35 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:16:35 ++ export PATH 01:16:35 ++ '[' -n '' ']' 01:16:35 ++ '[' -z '' ']' 01:16:35 ++ _OLD_VIRTUAL_PS1= 01:16:35 ++ PS1='(.venv3) ' 01:16:35 ++ export PS1 01:16:35 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:16:35 ++ export VIRTUAL_ENV_PROMPT 01:16:35 ++ hash -r 01:16:35 + omero admin stop 01:16:36 Waiting on shutdown. Use CTRL-C to exit 01:16:36 .+ sleep 5 01:16:51 + deactivate 01:16:51 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:16:51 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:16:51 + export PATH 01:16:51 + unset _OLD_VIRTUAL_PATH 01:16:51 + '[' -n '' ']' 01:16:51 + hash -r 01:16:51 + '[' -n '' ']' 01:16:51 + unset VIRTUAL_ENV 01:16:51 + unset VIRTUAL_ENV_PROMPT 01:16:51 + '[' '!' '' = nondestructive ']' 01:16:51 + unset -f deactivate 01:16:51 + rm -rf /home/omero/workspace/OMERO-server/.venv3 01:16:52 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 01:16:56 + '[' false = true ']' 01:16:56 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 01:16:56 Skipping PURGE_DATA:CleanDbAndRepo 01:16:56 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.20.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 01:16:58 Copied 1 artifact from "OMERO-build" build number 368 01:16:58 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 360 01:16:58 Copied 2 artifacts from "OMERO-build-build" build number 386 01:16:58 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12162757011018344560.sh 01:16:58 + source /home/settings.env 01:16:58 ++ OMERO_DB_HOST=pg 01:16:58 ++ OMERO_DB_USER=postgres 01:16:58 ++ OMERO_DB_PASS= 01:16:58 ++ OMERO_ROOT_PASS=omero 01:16:58 ++ OMERO_DATA_DIR=/OMERO 01:16:58 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:16:58 + OMERO_DB_NAME=OMERO-server 01:16:58 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:16:58 + mkdir -p /home/omero/omero-server-data 01:16:58 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:16:58 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:16:58 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:16:58 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:16:58 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:16:58 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:16:58 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:16:58 ++ ls OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368.zip 01:16:58 + ZIP=OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368.zip 01:16:58 + '[' '!' -z '' ']' 01:16:58 + DIST=OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368 01:16:58 + unzip OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368.zip 01:16:58 Archive: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368.zip 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/blitz/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/grid/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/profiles/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/error/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/grid/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/luts/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/luts/janelia/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/luts/matplotlib/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/luts/ncsa_paledit/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/luts/seaborn/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/luts/wcif/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/omero/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/omero/analysis_scripts/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/omero/annotation_scripts/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/omero/export_scripts/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/omero/figure_scripts/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/omero/import_scripts/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/scripts/omero/util_scripts/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/server/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/share/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/share/licenses/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/misc/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__1/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__10/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__11/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__2/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__3/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__4/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__5/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__6/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__7/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__8/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3A__9/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3__4/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3__5/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3__6/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO3__7/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4.1__0/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4.2__0/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4.2__0/t/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4.3__0/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4.4__0/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4__0/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.0__0/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.1__1/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.2__0/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.3__0/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4DEV__1/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4DEV__2/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4DEV__3/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/ 01:16:58 creating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/var/ 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/LICENSE.txt 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/backup.cfg 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/blitz/mail-senders.example 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/blitz/mail-server.example 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/build.properties 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/env.bat 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/env.sh 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/hibernate.properties 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/ice.config 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/logback-cli.xml 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/logback-indexing-cli.xml 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/logback-indexing.xml 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/logback.xml 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/mime.types 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/node1.cfg 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/node2.cfg 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/omero.properties 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/profiles/psql 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/rollover.cfg 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/Windows.cfg 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/error/maintainance.html 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/grid/README 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/grid/default.xml 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/grid/templates.xml 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/grid/windefault.xml 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/ice.config 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/internal.cfg 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/master.cfg 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/templates/robot.template 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/etc/testdropbox.config 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/history.rst 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/OMEZarrReader.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/activation.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/aggdesigner-algorithm.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/aircompressor.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/annotations.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/antlr.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/aopalliance.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/avatica-core.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/avatica-metrics.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/aws-java-sdk-core.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/aws-java-sdk-kms.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/aws-java-sdk-s3.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/base.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/batik-all.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/batik-anim.jar 01:16:58 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/lib/client/batik-awt-util.jar 01:16:58 inflating: 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OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO4__0/OMERO3A__11.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 01:17:01 inflating: 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inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/psql-footer.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/psql-header.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/schema.sql 01:17:01 inflating: OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368/sql/psql/OMERO5.4__0/views.sql 01:17:01 + rm -f OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368.zip 01:17:01 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-549-ef295a6e2a-ice36-b368 /home/omero/workspace/OMERO-server/OMERO.server 01:17:01 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:17:01 ++ deactivate nondestructive 01:17:01 ++ '[' -n '' ']' 01:17:01 ++ '[' -n '' ']' 01:17:01 ++ hash -r 01:17:01 ++ '[' -n '' ']' 01:17:01 ++ unset VIRTUAL_ENV 01:17:01 ++ unset VIRTUAL_ENV_PROMPT 01:17:01 ++ '[' '!' nondestructive = nondestructive ']' 01:17:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:17:01 ++ export VIRTUAL_ENV 01:17:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:17:01 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:17:01 ++ export PATH 01:17:01 ++ '[' -n '' ']' 01:17:01 ++ '[' -z '' ']' 01:17:01 ++ _OLD_VIRTUAL_PS1= 01:17:01 ++ PS1='(.venv3) ' 01:17:01 ++ export PS1 01:17:01 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:17:01 ++ export VIRTUAL_ENV_PROMPT 01:17:01 ++ hash -r 01:17:01 + pip install -U pip 01:17:01 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 01:17:01 Collecting pip 01:17:01 Using cached pip-25.0.1-py3-none-any.whl (1.8 MB) 01:17:01 Installing collected packages: pip 01:17:01 Attempting uninstall: pip 01:17:01 Found existing installation: pip 22.3.1 01:17:02 Uninstalling pip-22.3.1: 01:17:02 Successfully uninstalled pip-22.3.1 01:17:03 Successfully installed pip-25.0.1 01:17:03 WARNING: There was an error checking the latest version of pip. 01:17:03 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:17:03 Collecting zeroc-ice==3.6.5 01:17:04 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:17:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.3 MB/s eta 0:00:00 01:17:07 Installing collected packages: zeroc-ice 01:17:08 Successfully installed zeroc-ice-3.6.5 01:17:08 + pip install markdown 01:17:09 Collecting markdown 01:17:09 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 01:17:09 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 01:17:09 Installing collected packages: markdown 01:17:09 Successfully installed markdown-3.7 01:17:09 + pip install reportlab 01:17:09 Collecting reportlab 01:17:09 Using cached reportlab-4.3.1-py3-none-any.whl.metadata (1.7 kB) 01:17:09 Collecting pillow>=9.0.0 (from reportlab) 01:17:09 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.1 kB) 01:17:09 Collecting chardet (from reportlab) 01:17:09 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 01:17:09 Using cached reportlab-4.3.1-py3-none-any.whl (1.9 MB) 01:17:09 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB) 01:17:09 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 01:17:10 Installing collected packages: pillow, chardet, reportlab 01:17:11 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.3.1 01:17:11 + pip install omego 01:17:11 Collecting omego 01:17:11 Using cached omego-0.7.0-py3-none-any.whl 01:17:11 Collecting future (from omego) 01:17:11 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 01:17:11 Collecting yaclifw>=0.1.1 (from omego) 01:17:11 Using cached yaclifw-0.2.0-py3-none-any.whl 01:17:11 Collecting six (from yaclifw>=0.1.1->omego) 01:17:11 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 01:17:11 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:17:11 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 01:17:11 Installing collected packages: six, future, yaclifw, omego 01:17:12 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 01:17:12 + pip install tables 01:17:12 Collecting tables 01:17:12 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) 01:17:12 Collecting numpy>=1.20.0 (from tables) 01:17:12 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB) 01:17:12 Collecting numexpr>=2.6.2 (from tables) 01:17:12 Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 01:17:12 Collecting packaging (from tables) 01:17:12 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB) 01:17:13 Collecting py-cpuinfo (from tables) 01:17:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 01:17:13 Collecting blosc2>=2.3.0 (from tables) 01:17:13 Using cached blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB) 01:17:13 Collecting typing-extensions>=4.4.0 (from tables) 01:17:13 Using cached typing_extensions-4.13.0-py3-none-any.whl.metadata (3.0 kB) 01:17:13 Collecting ndindex (from blosc2>=2.3.0->tables) 01:17:13 Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) 01:17:13 Collecting msgpack (from blosc2>=2.3.0->tables) 01:17:13 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 01:17:13 Collecting platformdirs (from blosc2>=2.3.0->tables) 01:17:13 Using cached platformdirs-4.3.7-py3-none-any.whl.metadata (11 kB) 01:17:13 Collecting requests (from blosc2>=2.3.0->tables) 01:17:13 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 01:17:13 Collecting charset-normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables) 01:17:13 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) 01:17:13 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 01:17:13 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) 01:17:13 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) 01:17:13 Using cached urllib3-2.3.0-py3-none-any.whl.metadata (6.5 kB) 01:17:13 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) 01:17:13 Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB) 01:17:13 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 01:17:13 Using cached blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 01:17:13 Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (398 kB) 01:17:13 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB) 01:17:13 Using cached typing_extensions-4.13.0-py3-none-any.whl (45 kB) 01:17:13 Using cached packaging-24.2-py3-none-any.whl (65 kB) 01:17:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 01:17:13 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB) 01:17:13 Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (506 kB) 01:17:13 Using cached platformdirs-4.3.7-py3-none-any.whl (18 kB) 01:17:13 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 01:17:13 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) 01:17:13 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) 01:17:13 Using cached idna-3.10-py3-none-any.whl (70 kB) 01:17:13 Using cached urllib3-2.3.0-py3-none-any.whl (128 kB) 01:17:14 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, charset-normalizer, certifi, requests, numexpr, blosc2, tables 01:17:17 Successfully installed blosc2-3.2.1 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.2.4 packaging-24.2 platformdirs-4.3.7 py-cpuinfo-9.0.0 requests-2.32.3 tables-3.10.2 typing-extensions-4.13.0 urllib3-2.3.0 01:17:17 + pip install jinja2 01:17:17 Collecting jinja2 01:17:17 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 01:17:17 Collecting MarkupSafe>=2.0 (from jinja2) 01:17:17 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) 01:17:17 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 01:17:17 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) 01:17:18 Installing collected packages: MarkupSafe, jinja2 01:17:18 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6 01:17:18 + pip install omero-py 01:17:18 Collecting omero-py 01:17:18 Using cached omero_py-5.19.8-py3-none-any.whl.metadata (6.5 kB) 01:17:18 Collecting urllib3<2 (from omero-py) 01:17:18 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 01:17:18 Collecting appdirs (from omero-py) 01:17:18 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 01:17:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 01:17:18 Collecting numpy<2 (from omero-py) 01:17:18 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 01:17:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.1.0) 01:17:18 Collecting PyYAML (from omero-py) 01:17:18 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 01:17:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:17:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.3) 01:17:18 Collecting portalocker (from omero-py) 01:17:18 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB) 01:17:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.1) 01:17:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10) 01:17:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.1.31) 01:17:18 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB) 01:17:18 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB) 01:17:18 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 01:17:18 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:17:18 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 01:17:18 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 01:17:19 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, omero-py 01:17:19 Attempting uninstall: urllib3 01:17:19 Found existing installation: urllib3 2.3.0 01:17:19 Uninstalling urllib3-2.3.0: 01:17:19 Successfully uninstalled urllib3-2.3.0 01:17:19 Attempting uninstall: numpy 01:17:19 Found existing installation: numpy 2.2.4 01:17:19 Uninstalling numpy-2.2.4: 01:17:19 Successfully uninstalled numpy-2.2.4 01:17:23 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 urllib3-1.26.20 01:17:23 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 01:17:23 Collecting omero-metadata 01:17:23 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-e0zkjdw8/omero-metadata_e3085e8968734c298aa48e1d89b6d70f 01:17:23 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-e0zkjdw8/omero-metadata_e3085e8968734c298aa48e1d89b6d70f 01:17:24 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit d1058d71392ac4f786641c8b37c209c9b0fd7ca5 01:17:24 Installing build dependencies: started 01:17:25 Installing build dependencies: finished with status 'done' 01:17:25 Getting requirements to build wheel: started 01:17:26 Getting requirements to build wheel: finished with status 'done' 01:17:26 Preparing metadata (pyproject.toml): started 01:17:26 Preparing metadata (pyproject.toml): finished with status 'done' 01:17:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.19.8) 01:17:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2) 01:17:26 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 01:17:26 Collecting pandas (from omero-metadata) 01:17:26 Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) 01:17:26 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 01:17:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 01:17:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 01:17:26 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 01:17:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0) 01:17:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 01:17:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 01:17:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1) 01:17:26 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2) 01:17:26 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 01:17:26 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 01:17:26 Collecting pytz>=2020.1 (from pandas->omero-metadata) 01:17:26 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) 01:17:26 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 01:17:26 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB) 01:17:26 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 01:17:26 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1) 01:17:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) 01:17:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31) 01:17:26 Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 01:17:26 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 01:17:26 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) 01:17:26 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB) 01:17:26 Building wheels for collected packages: omero-metadata 01:17:26 Building wheel for omero-metadata (pyproject.toml): started 01:17:27 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 01:17:27 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39281 sha256=52979fede42afe9c28223ca78fe610d278e2b25aef65ac373405ac1e14f52581 01:17:27 Stored in directory: /tmp/pip-ephem-wheel-cache-1c59g3yb/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 01:17:27 Successfully built omero-metadata 01:17:27 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 01:17:31 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.2 01:17:31 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 01:17:32 Collecting omero-cli-render 01:17:32 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-i6jr89sa/omero-cli-render_471d76b3a4ff4e4ab4ddfaca2bc23150 01:17:32 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-i6jr89sa/omero-cli-render_471d76b3a4ff4e4ab4ddfaca2bc23150 01:17:33 Running command git checkout -b merge_ci --track origin/merge_ci 01:17:34 Switched to a new branch 'merge_ci' 01:17:34 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:17:34 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 2f41bfadc8b523cf37239a19d74dcc20918173ae 01:17:34 Installing build dependencies: started 01:17:37 Installing build dependencies: finished with status 'done' 01:17:37 Getting requirements to build wheel: started 01:17:37 Getting requirements to build wheel: finished with status 'done' 01:17:37 Preparing metadata (pyproject.toml): started 01:17:37 Preparing metadata (pyproject.toml): finished with status 'done' 01:17:37 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2) 01:17:37 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.19.8) 01:17:37 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 01:17:37 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 01:17:37 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 01:17:37 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 01:17:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0) 01:17:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 01:17:37 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 01:17:37 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1) 01:17:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1) 01:17:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) 01:17:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31) 01:17:37 Building wheels for collected packages: omero-cli-render 01:17:37 Building wheel for omero-cli-render (pyproject.toml): started 01:17:37 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 01:17:37 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19592 sha256=a1b07eebe5b116770d2962ee2cd825bd4761d7b6a390b638b028a1d3709b742a 01:17:37 Stored in directory: /tmp/pip-ephem-wheel-cache-ew4coev2/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 01:17:37 Successfully built omero-cli-render 01:17:37 Installing collected packages: omero-cli-render 01:17:37 Successfully installed omero-cli-render-0.8.2.dev0 01:17:37 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 01:17:38 Collecting omero-cli-duplicate 01:17:38 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-o6sr6usj/omero-cli-duplicate_a72a3a6ada77454794c801b02ea49a24 01:17:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-o6sr6usj/omero-cli-duplicate_a72a3a6ada77454794c801b02ea49a24 01:17:38 Running command git checkout -b merge_ci --track origin/merge_ci 01:17:39 Switched to a new branch 'merge_ci' 01:17:39 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:17:39 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 0b3ee038f4e5da8083b64a0ebdb53c6607494e23 01:17:39 Installing build dependencies: started 01:17:40 Installing build dependencies: finished with status 'done' 01:17:40 Getting requirements to build wheel: started 01:17:41 Getting requirements to build wheel: finished with status 'done' 01:17:41 Preparing metadata (pyproject.toml): started 01:17:41 Preparing metadata (pyproject.toml): finished with status 'done' 01:17:41 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.19.8) 01:17:41 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 01:17:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 01:17:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 01:17:41 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 01:17:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0) 01:17:41 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 01:17:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 01:17:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 01:17:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1) 01:17:41 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1) 01:17:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) 01:17:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31) 01:17:41 Building wheels for collected packages: omero-cli-duplicate 01:17:41 Building wheel for omero-cli-duplicate (pyproject.toml): started 01:17:41 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 01:17:41 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=3d98de20aefea577c367ca6684ee9db8a659b609da5188cc701858be390327bb 01:17:41 Stored in directory: /tmp/pip-ephem-wheel-cache-7jnx_8tz/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 01:17:41 Successfully built omero-cli-duplicate 01:17:41 Installing collected packages: omero-cli-duplicate 01:17:41 Successfully installed omero-cli-duplicate-0.4.1.dev0 01:17:41 + pip install omero-certificates 01:17:42 Collecting omero-certificates 01:17:42 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 01:17:42 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.19.8) 01:17:42 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 01:17:42 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 01:17:42 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 01:17:42 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 01:17:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0) 01:17:42 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 01:17:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 01:17:42 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 01:17:42 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1) 01:17:42 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1) 01:17:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) 01:17:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31) 01:17:42 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 01:17:42 Installing collected packages: omero-certificates 01:17:42 Successfully installed omero-certificates-0.4.0 01:17:42 + for x in *.tar.gz 01:17:42 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 01:17:42 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 01:17:42 Installing build dependencies: started 01:17:44 Installing build dependencies: finished with status 'done' 01:17:44 Getting requirements to build wheel: started 01:17:44 Getting requirements to build wheel: finished with status 'done' 01:17:44 Preparing metadata (pyproject.toml): started 01:17:44 Preparing metadata (pyproject.toml): finished with status 'done' 01:17:44 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.8) 01:17:44 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 01:17:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 01:17:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 01:17:44 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 01:17:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0) 01:17:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 01:17:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 01:17:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 01:17:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1) 01:17:44 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1) 01:17:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) 01:17:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31) 01:17:44 Building wheels for collected packages: omero-dropbox 01:17:44 Building wheel for omero-dropbox (pyproject.toml): started 01:17:44 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 01:17:44 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49141 sha256=b96dcc17798bcd8930da08f2a5f14c00024954ff98dae5e556c553d84985e3b6 01:17:44 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 01:17:44 Successfully built omero-dropbox 01:17:44 Installing collected packages: omero-dropbox 01:17:44 Successfully installed omero-dropbox-5.7.1.dev0 01:17:45 + for x in *.tar.gz 01:17:45 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 01:17:45 Processing ./omero_marshal-0.9.1.dev0.tar.gz 01:17:45 Installing build dependencies: started 01:17:46 Installing build dependencies: finished with status 'done' 01:17:46 Getting requirements to build wheel: started 01:17:47 Getting requirements to build wheel: finished with status 'done' 01:17:47 Preparing metadata (pyproject.toml): started 01:17:47 Preparing metadata (pyproject.toml): finished with status 'done' 01:17:47 Building wheels for collected packages: omero_marshal 01:17:47 Building wheel for omero_marshal (pyproject.toml): started 01:17:47 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 01:17:47 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88125 sha256=312f411bfe9a3ea235b2c2ac9670e877099c6a6d75c8492aaef11466e108a3ad 01:17:47 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18 01:17:47 Successfully built omero_marshal 01:17:47 Installing collected packages: omero_marshal 01:17:47 Successfully installed omero_marshal-0.9.1.dev0 01:17:48 + for x in *.tar.gz 01:17:48 + pip install -U omero_py-5.20.0.dev0.tar.gz 01:17:48 Processing ./omero_py-5.20.0.dev0.tar.gz 01:17:48 Installing build dependencies: started 01:17:50 Installing build dependencies: finished with status 'done' 01:17:50 Getting requirements to build wheel: started 01:17:50 Getting requirements to build wheel: finished with status 'done' 01:17:50 Preparing metadata (pyproject.toml): started 01:17:50 Preparing metadata (pyproject.toml): finished with status 'done' 01:17:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.26.20) 01:17:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.4.4) 01:17:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.0.0) 01:17:50 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.26.4) 01:17:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (11.1.0) 01:17:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (6.0.2) 01:17:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (3.6.5) 01:17:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (2.32.3) 01:17:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (3.1.1) 01:17:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (3.4.1) 01:17:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (3.10) 01:17:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (2025.1.31) 01:17:50 Building wheels for collected packages: omero-py 01:17:50 Building wheel for omero-py (pyproject.toml): started 01:17:51 Building wheel for omero-py (pyproject.toml): finished with status 'done' 01:17:51 Created wheel for omero-py: filename=omero_py-5.20.0.dev0-py3-none-any.whl size=2783421 sha256=3524f241a29a541896f95ab87ba497869e76e592f77bc1dcfaf11c1febbbfdb6 01:17:51 Stored in directory: /home/omero/.cache/pip/wheels/5c/d3/f5/669c3cf10fa717cb3e978234d9c068a609ce43910a81d0cc7a 01:17:51 Successfully built omero-py 01:17:51 Installing collected packages: omero-py 01:17:51 Attempting uninstall: omero-py 01:17:51 Found existing installation: omero-py 5.19.8 01:17:51 Uninstalling omero-py-5.19.8: 01:17:52 Successfully uninstalled omero-py-5.19.8 01:17:54 Successfully installed omero-py-5.20.0.dev0 01:17:54 + for x in *.tar.gz 01:17:54 + pip install -U omero_scripts-5.9.1.dev0.tar.gz 01:17:54 Processing ./omero_scripts-5.9.1.dev0.tar.gz 01:17:54 Installing build dependencies: started 01:17:56 Installing build dependencies: finished with status 'done' 01:17:56 Getting requirements to build wheel: started 01:17:56 Getting requirements to build wheel: finished with status 'done' 01:17:56 Preparing metadata (pyproject.toml): started 01:17:56 Preparing metadata (pyproject.toml): finished with status 'done' 01:17:56 Building wheels for collected packages: omero-scripts 01:17:56 Building wheel for omero-scripts (pyproject.toml): started 01:17:57 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 01:17:57 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136848 sha256=7e2536d0193cf944d81899ec237a3f9d2c5b02bf04f46f4a4866eedc9e90a957 01:17:57 Stored in directory: /home/omero/.cache/pip/wheels/5d/64/64/66c19773daf66dee2b16f9ebd49fde08680f277d4fff67beed 01:17:57 Successfully built omero-scripts 01:17:57 Installing collected packages: omero-scripts 01:17:57 Successfully installed omero-scripts-5.9.1.dev0 01:17:57 + for x in *.tar.gz 01:17:57 + pip install -U omero_web-5.29.1.dev0.tar.gz 01:17:57 Processing ./omero_web-5.29.1.dev0.tar.gz 01:17:58 Installing build dependencies: started 01:17:59 Installing build dependencies: finished with status 'done' 01:17:59 Getting requirements to build wheel: started 01:17:59 Getting requirements to build wheel: finished with status 'done' 01:17:59 Preparing metadata (pyproject.toml): started 01:18:00 Preparing metadata (pyproject.toml): finished with status 'done' 01:18:00 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.20.0.dev0) 01:18:00 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0) 01:18:00 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 01:18:00 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0) 01:18:00 Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB) 01:18:00 Collecting django-pipeline (from omero-web==5.29.1.dev0) 01:18:00 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB) 01:18:00 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0) 01:18:00 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 01:18:00 Collecting django-csp (from omero-web==5.29.1.dev0) 01:18:00 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 01:18:00 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0) 01:18:00 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB) 01:18:00 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0) 01:18:00 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 01:18:00 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0) 01:18:00 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.1.0) 01:18:00 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2) 01:18:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1) 01:18:00 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (24.2) 01:18:00 Collecting importlib-resources (from omero-web==5.29.1.dev0) 01:18:00 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 01:18:00 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) 01:18:00 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 01:18:00 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) 01:18:00 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) 01:18:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20) 01:18:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4) 01:18:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0) 01:18:00 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4) 01:18:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2) 01:18:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5) 01:18:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3) 01:18:00 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (65.5.1) 01:18:00 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0) 01:18:00 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 01:18:00 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1) 01:18:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10) 01:18:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31) 01:18:00 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 01:18:00 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 01:18:00 Using cached Django-4.2.20-py3-none-any.whl (8.0 MB) 01:18:00 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 01:18:00 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB) 01:18:00 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 01:18:00 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB) 01:18:00 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 01:18:00 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 01:18:00 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) 01:18:00 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 01:18:00 Building wheels for collected packages: omero-web 01:18:00 Building wheel for omero-web (pyproject.toml): started 01:18:02 Building wheel for omero-web (pyproject.toml): finished with status 'done' 01:18:02 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817949 sha256=4d96e8aadea01c76ae2c62a26c50ec082080458f8ccd1f344f346645c3601a30 01:18:02 Stored in directory: /home/omero/.cache/pip/wheels/b6/72/73/a29488e9ae7a2242fcfdc532a2c6f9884a34cc378eb261962a 01:18:02 Successfully built omero-web 01:18:02 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web 01:18:05 Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0 01:18:05 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:18:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 01:18:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 01:18:05 --2025-04-01 01:18:05-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:18:05 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.111.133, ... 01:18:05 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 01:18:05 HTTP request sent, awaiting response... 200 OK 01:18:05 Length: 121749 (119K) [text/plain] 01:18:05 Saving to: ‘Figure_To_Pdf.py’ 01:18:05 01:18:05 0K .......... .......... .......... .......... .......... 42% 3.46M 0s 01:18:05 50K .......... .......... .......... .......... .......... 84% 5.19M 0s 01:18:05 100K .......... ........ 100% 22.1M=0.02s 01:18:05 01:18:05 2025-04-01 01:18:05 (4.76 MB/s) - ‘Figure_To_Pdf.py’ saved [121749/121749] 01:18:05 01:18:05 + chmod 755 Figure_To_Pdf.py 01:18:05 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 01:18:05 + omero config set omero.db.name OMERO-server 01:18:07 + omero config set omero.db.host pg 01:18:08 + omero config set omero.db.user postgres 01:18:09 + omero config set omero.data.dir /home/omero/omero-server-data 01:18:10 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 01:18:12 + omero config set omero.db.poolsize 25 01:18:13 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 01:18:14 + omero config set omero.security.trustStorePassword changeit 01:18:15 + omero config set omero.mail.config true 01:18:17 + omero config set omero.mail.from qa@openmicroscopy.org.uk 01:18:18 + omero config set omero.mail.host smtp.dundee.ac.uk 01:18:19 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 01:18:21 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 01:18:22 + omero certificates 01:18:23 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024) 01:18:23 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 01:18:23 + '[' false = true ']' 01:18:23 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 01:18:23 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 01:18:23 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 01:18:23 2025-04-01 01:18:23,758 [ omego.db] DEBUG dbcommand => upgrade 01:18:23 2025-04-01 01:18:23,758 [ omego.db] DEBUG dbhost => localhost 01:18:23 2025-04-01 01:18:23,758 [ omego.db] DEBUG dbname => OMERO-server 01:18:23 2025-04-01 01:18:23,758 [ omego.db] DEBUG dbpass => omero 01:18:23 2025-04-01 01:18:23,758 [ omego.db] DEBUG dbuser => omero 01:18:23 2025-04-01 01:18:23,758 [ omego.db] DEBUG rootpass => omero 01:18:23 2025-04-01 01:18:23,758 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 01:18:23 2025-04-01 01:18:23,758 [omego.extern] INFO Executing : omero version 01:18:24 OMERO.py version: 01:18:24 OMERO.server version: 01:18:24 5.6.3-549-ef295a6e2a-ice36-b368 01:18:24 5.20.0.dev0 01:18:25 2025-04-01 01:18:25,037 [omego.extern] INFO Completed [1.279 s] 01:18:25 2025-04-01 01:18:25,037 [omego.extern] DEBUG Using omero CLI from omero 01:18:25 2025-04-01 01:18:25,037 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 01:18:25 2025-04-01 01:18:25,037 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:18:25 2025-04-01 01:18:25,037 [omego.extern] INFO Executing : omero config get --show-password 01:18:26 2025-04-01 01:18:26,298 [omego.extern] INFO Completed [1.260 s] 01:18:26 2025-04-01 01:18:26,298 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:18:26 2025-04-01 01:18:26,298 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 01:18:26 2025-04-01 01:18:26,304 [omego.extern] INFO Completed [0.006 s] 01:18:26 2025-04-01 01:18:26,304 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.8\n' 01:18:26 2025-04-01 01:18:26,304 [ omego.db] INFO psql version: psql (PostgreSQL) 16.8 01:18:26 01:18:26 2025-04-01 01:18:26,304 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:18:26 2025-04-01 01:18:26,304 [omego.extern] INFO Executing : omero config get --show-password 01:18:27 2025-04-01 01:18:27,573 [omego.extern] INFO Completed [1.269 s] 01:18:27 2025-04-01 01:18:27,573 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:18:27 2025-04-01 01:18:27,573 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 01:18:27 2025-04-01 01:18:27,583 [omego.extern] INFO Completed [0.010 s] 01:18:27 2025-04-01 01:18:27,583 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n' 01:18:27 2025-04-01 01:18:27,583 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:18:27 2025-04-01 01:18:27,583 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:18:27 2025-04-01 01:18:27,583 [omego.extern] INFO Executing : omero config get --show-password 01:18:28 2025-04-01 01:18:28,816 [omego.extern] INFO Completed [1.232 s] 01:18:28 2025-04-01 01:18:28,816 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:18:28 2025-04-01 01:18:28,816 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:18:28 2025-04-01 01:18:28,827 [omego.extern] INFO Completed [0.011 s] 01:18:28 2025-04-01 01:18:28,827 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 01:18:28 2025-04-01 01:18:28,827 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 01:18:28 2025-04-01 01:18:28,829 [ omego.db] INFO Database is already at OMERO5.4__0 01:18:28 + export LANG=en_US.UTF-8 01:18:28 + LANG=en_US.UTF-8 01:18:28 + export LANGUAGE=en_US:en 01:18:28 + LANGUAGE=en_US:en 01:18:28 + export LC_ALL=en_US.UTF-8 01:18:28 + LC_ALL=en_US.UTF-8 01:18:28 + BUILD_ID=DONT_KILL_ME 01:18:28 + omero admin start 01:18:37 No descriptor given. Using etc/grid/default.xml 01:18:45 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 01:18:45 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 01:18:45 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 01:18:45 Waiting on startup. Use CTRL-C to exit 01:18:46 + omero admin waitup 01:18:47 Waiting on startup. Use CTRL-C to exit 01:18:47 + omero admin diagnostics 01:18:49 01:18:49 ================================================================================ 01:18:49 OMERO Diagnostics (admin) 01:18:49 ================================================================================ 01:18:49 01:18:49 Commands: java -version 11.0.25 (/usr/bin/java) 01:18:49 Commands: python -V 3.11.9 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 01:18:49 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 01:18:49 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 01:18:49 Commands: psql --version 16.8 (/usr/bin/psql) 01:18:49 Commands: openssl version 3.2.24 (/usr/bin/openssl) 01:18:49 01:18:49 Component: OMERO.py 5.20.0.dev0 01:18:49 Component: OMERO.server 5.6.3-549-ef295a6e2a-ice36-b368 01:18:49 01:18:49 Server: icegridnode running 01:18:49 Server: Blitz-0 active (pid = 50846, enabled) 01:18:49 Server: Indexer-0 activating (enabled) 01:18:49 Server: OMERO.Glacier2 active (pid = 50876, enabled) 01:18:49 Server: OMERO.IceStorm active (pid = 50903, enabled) 01:18:49 Server: Processor-0 active (pid = 50883, enabled) 01:18:49 Server: Tables-0 active (pid = 50899, enabled) 01:18:49 01:18:49 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 01:18:49 Log files: Blitz-0.log 32.9 KB errors=0 warnings=1 01:18:49 Log files: DropBox.log n/a 01:18:49 Log files: FileServer.log n/a 01:18:49 Log files: Indexer-0.log 238 B 01:18:49 Log files: MonitorServer.log n/a 01:18:49 Log files: Processor-0.log 735 B 01:18:49 Log files: Tables-0.log 962 B 01:18:49 Log files: TestDropBox.log n/a 01:18:49 Log files: master.err 20.4 KB 01:18:49 Log files: master.out 30.5 KB 01:18:49 Log files: Total size 0.09 MB 01:18:49 01:18:49 01:18:49 Environment:OMERO_HOME=(unset) 01:18:49 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:18:49 Environment:OMERO_NODE=(unset) 01:18:49 Environment:OMERO_MASTER=(unset) 01:18:49 Environment:OMERO_USERDIR=(unset) 01:18:49 Environment:OMERO_TMPDIR=(unset) 01:18:49 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:18:49 Environment:PYTHONPATH=(unset) 01:18:49 Environment:ICE_HOME=/opt/ice-3.6.5 01:18:49 Environment:LD_LIBRARY_PATH=(unset) 01:18:49 Environment:DYLD_LIBRARY_PATH=(unset) 01:18:49 01:18:49 OMERO SSL port:4064 01:18:49 OMERO TCP port:4063 01:18:49 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 01:18:49 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 01:18:49 01:18:49 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:18:49 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:18:49 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:18:49 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:18:49 01:18:49 Jar: lib/server/formats-api.jar Bio-Formats API 8.2.0-SNAPSHOT 1 April 2025 4a729810f057aab571a6b8ac2ca80c6ebbf77939 01:18:49 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.2.0-SNAPSHOT 1 April 2025 4a729810f057aab571a6b8ac2ca80c6ebbf77939 01:18:49 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.2.0-SNAPSHOT 1 April 2025 4a729810f057aab571a6b8ac2ca80c6ebbf77939 01:18:49 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 1 April 2025 7234cd2c37fbc3317fd6aac3ced6e4a41a1fc1e3 01:18:49 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 1 April 2025 7234cd2c37fbc3317fd6aac3ced6e4a41a1fc1e3 01:18:49 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 1 April 2025 7234cd2c37fbc3317fd6aac3ced6e4a41a1fc1e3 01:18:49 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 1 April 2025 7234cd2c37fbc3317fd6aac3ced6e4a41a1fc1e3 01:18:49 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 1 April 2025 7234cd2c37fbc3317fd6aac3ced6e4a41a1fc1e3 01:18:49 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 1 April 2025 7234cd2c37fbc3317fd6aac3ced6e4a41a1fc1e3 01:18:49 Jar: lib/server/omero-blitz.jar jar 5.8.3-SNAPSHOT 01:18:49 Jar: lib/server/omero-common.jar jar 5.7.3-SNAPSHOT 01:18:49 Jar: lib/server/omero-gateway.jar jar 5.10.3-SNAPSHOT 01:18:49 Jar: lib/server/omero-model.jar jar 5.7.3-SNAPSHOT 01:18:49 Jar: lib/server/omero-renderer.jar jar 5.6.3-SNAPSHOT 01:18:49 Jar: lib/server/omero-romio.jar jar 5.8.3-SNAPSHOT 01:18:49 Jar: lib/server/omero-server.jar jar 5.7.3-SNAPSHOT 01:18:49 + deactivate 01:18:49 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:18:49 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:18:49 + export PATH 01:18:49 + unset _OLD_VIRTUAL_PATH 01:18:49 + '[' -n '' ']' 01:18:49 + hash -r 01:18:49 + '[' -n '' ']' 01:18:49 + unset VIRTUAL_ENV 01:18:49 + unset VIRTUAL_ENV_PROMPT 01:18:49 + '[' '!' '' = nondestructive ']' 01:18:49 + unset -f deactivate 01:18:49 Finished: SUCCESS