01:49:53 Started by upstream project "Trigger" build number 56 01:49:53 originally caused by: 01:49:53 Started by timer 01:49:53 Running as SYSTEM 01:49:53 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 01:49:53 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14774892210829255954.sh 01:49:53 + source /home/settings.env 01:49:53 ++ OMERO_DB_HOST=pg 01:49:53 ++ OMERO_DB_USER=postgres 01:49:53 ++ OMERO_DB_PASS= 01:49:53 ++ OMERO_ROOT_PASS=omero 01:49:53 ++ OMERO_DATA_DIR=/OMERO 01:49:53 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:49:53 + OMERO_DB_NAME=OMERO-server 01:49:53 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:49:53 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:49:53 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:49:53 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:49:53 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 01:49:53 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:49:53 ++ deactivate nondestructive 01:49:53 ++ '[' -n '' ']' 01:49:53 ++ '[' -n '' ']' 01:49:53 ++ hash -r 01:49:53 ++ '[' -n '' ']' 01:49:53 ++ unset VIRTUAL_ENV 01:49:53 ++ unset VIRTUAL_ENV_PROMPT 01:49:53 ++ '[' '!' nondestructive = nondestructive ']' 01:49:53 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:49:53 ++ export VIRTUAL_ENV 01:49:53 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:49:53 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:49:53 ++ export PATH 01:49:53 ++ '[' -n '' ']' 01:49:53 ++ '[' -z '' ']' 01:49:53 ++ _OLD_VIRTUAL_PS1= 01:49:53 ++ PS1='(.venv3) ' 01:49:53 ++ export PS1 01:49:53 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:49:53 ++ export VIRTUAL_ENV_PROMPT 01:49:53 ++ hash -r 01:49:53 + omero admin stop 01:50:04 Waiting on shutdown. Use CTRL-C to exit 01:50:04 .+ sleep 5 01:50:20 + deactivate 01:50:20 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:50:20 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:50:20 + export PATH 01:50:20 + unset _OLD_VIRTUAL_PATH 01:50:20 + '[' -n '' ']' 01:50:20 + hash -r 01:50:20 + '[' -n '' ']' 01:50:20 + unset VIRTUAL_ENV 01:50:20 + unset VIRTUAL_ENV_PROMPT 01:50:20 + '[' '!' '' = nondestructive ']' 01:50:20 + unset -f deactivate 01:50:20 + rm -rf /home/omero/workspace/OMERO-server/.venv3 01:52:40 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 01:52:57 + '[' false = true ']' 01:52:57 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 01:52:57 Skipping PURGE_DATA:CleanDbAndRepo 01:52:57 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 01:53:02 Copied 1 artifact from "OMERO-build" build number 48 01:53:03 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 41 01:53:03 Copied 2 artifacts from "OMERO-build-build" build number 53 01:53:03 [OMERO-server] $ /bin/bash -xe /tmp/jenkins96032842906647259.sh 01:53:03 + source /home/settings.env 01:53:03 ++ OMERO_DB_HOST=pg 01:53:03 ++ OMERO_DB_USER=postgres 01:53:03 ++ OMERO_DB_PASS= 01:53:03 ++ OMERO_ROOT_PASS=omero 01:53:03 ++ OMERO_DATA_DIR=/OMERO 01:53:03 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:53:03 + OMERO_DB_NAME=OMERO-server 01:53:03 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:53:03 + mkdir -p /home/omero/omero-server-data 01:53:03 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:53:03 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:53:03 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:53:03 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:53:03 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:53:03 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:53:03 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:53:03 ++ ls OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48.zip 01:53:03 + ZIP=OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48.zip 01:53:03 + '[' '!' -z '' ']' 01:53:03 + DIST=OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48 01:53:03 + unzip OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48.zip 01:53:03 Archive: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48.zip 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/blitz/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/grid/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/profiles/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/error/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/grid/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/luts/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/luts/janelia/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/luts/matplotlib/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/luts/ncsa_paledit/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/luts/seaborn/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/luts/wcif/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/omero/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/omero/analysis_scripts/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/omero/annotation_scripts/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/omero/export_scripts/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/omero/figure_scripts/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/omero/import_scripts/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/scripts/omero/util_scripts/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/server/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/share/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/share/licenses/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/misc/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__1/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__10/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__11/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__2/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__3/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__4/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__5/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__6/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__7/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__8/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__9/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3__4/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3__5/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3__6/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3__7/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.1__0/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.2__0/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.2__0/t/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.3__0/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.4__0/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4__0/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.0__0/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.1__1/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.2__0/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.3__0/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4DEV__1/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4DEV__2/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4DEV__3/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/var/ 01:53:03 creating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/var/tmp/ 01:53:03 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/LICENSE.txt 01:53:03 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/backup.cfg 01:53:03 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/blitz/mail-senders.example 01:53:03 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/blitz/mail-server.example 01:53:03 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/build.properties 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/env.bat 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/env.sh 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/hibernate.properties 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/ice.config 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/logback-cli.xml 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/logback-indexing-cli.xml 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/logback-indexing.xml 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/logback.xml 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/mime.types 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/node1.cfg 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/node2.cfg 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/omero.properties 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/profiles/psql 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/rollover.cfg 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/Windows.cfg 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/error/maintainance.html 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/grid/README 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/grid/default.xml 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/grid/templates.xml 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/grid/windefault.xml 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/ice.config 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/internal.cfg 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/master.cfg 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/templates/robot.template 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/etc/testdropbox.config 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/history.rst 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/OMEZarrReader.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/accessors-smart.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/activation.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/aggdesigner-algorithm.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/aircompressor.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/antlr.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/aopalliance.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/apiguardian-api.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/asm.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/avatica-core.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/avatica-metrics.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/aws-java-sdk-core.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/aws-java-sdk-kms.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/aws-java-sdk-s3.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/base.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/batik-anim.jar 01:53:04 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/lib/client/batik-awt-util.jar 01:53:04 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inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/misc/current.sql 01:53:15 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/misc/enums.py 01:53:15 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__1/OMERO3__7.sql 01:53:15 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__10/OMERO3A__9.sql 01:53:15 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__11/OMERO3A__10.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__11/OMERO3A__5.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__2/OMERO3A__1.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__3/OMERO3A__2.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__3/OMERO3__5.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__4/OMERO3A__3.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__4/OMERO3__5.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__5/OMERO3A__4.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__6/OMERO3A__5.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__7/OMERO3A__6.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__8/OMERO3A__6.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3A__9/OMERO3A__8.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3__4/OMERO3__1.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3__5/OMERO3__4.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3__6/OMERO3__5.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO3__7/OMERO3__6.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.1__0/OMERO4__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO4__0/OMERO3A__11.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/psql-footer.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/psql-header.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/schema.sql 01:53:16 inflating: OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48/sql/psql/OMERO5.4__0/views.sql 01:53:16 + rm -f OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48.zip 01:53:16 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-643-fe2469f5c9-ice36-b48 /home/omero/workspace/OMERO-server/OMERO.server 01:53:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:53:16 ++ deactivate nondestructive 01:53:16 ++ '[' -n '' ']' 01:53:16 ++ '[' -n '' ']' 01:53:16 ++ hash -r 01:53:16 ++ '[' -n '' ']' 01:53:16 ++ unset VIRTUAL_ENV 01:53:16 ++ unset VIRTUAL_ENV_PROMPT 01:53:16 ++ '[' '!' nondestructive = nondestructive ']' 01:53:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:53:16 ++ export VIRTUAL_ENV 01:53:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:53:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:53:16 ++ export PATH 01:53:16 ++ '[' -n '' ']' 01:53:16 ++ '[' -z '' ']' 01:53:16 ++ _OLD_VIRTUAL_PS1= 01:53:16 ++ PS1='(.venv3) ' 01:53:16 ++ export PS1 01:53:16 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:53:16 ++ export VIRTUAL_ENV_PROMPT 01:53:16 ++ hash -r 01:53:16 + pip install -U pip 01:53:17 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 01:53:18 Collecting pip 01:53:18 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 01:53:18 Installing collected packages: pip 01:53:18 Attempting uninstall: pip 01:53:18 Found existing installation: pip 22.3.1 01:53:19 Uninstalling pip-22.3.1: 01:53:19 Successfully uninstalled pip-22.3.1 01:53:31 Successfully installed pip-26.2.1 01:53:31 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:53:32 Collecting zeroc-ice==3.6.5 01:53:32 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:53:35 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.3 MB/s 0:00:02 01:53:35 Installing collected packages: zeroc-ice 01:53:38 Successfully installed zeroc-ice-3.6.5 01:53:38 + pip install markdown 01:53:39 Collecting markdown 01:53:39 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB) 01:53:39 Using cached markdown-3.10.3-py3-none-any.whl (110 kB) 01:53:40 Installing collected packages: markdown 01:53:40 Successfully installed markdown-3.10.3 01:53:40 + pip install reportlab 01:53:42 Collecting reportlab 01:53:42 Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB) 01:53:42 Collecting pillow>=9.0.0 (from reportlab) 01:53:42 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 01:53:42 Collecting charset-normalizer (from reportlab) 01:53:42 Using cached charset_normalizer-3.5.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (44 kB) 01:53:42 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB) 01:53:42 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 01:53:43 Using cached charset_normalizer-3.5.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (261 kB) 01:53:43 Installing collected packages: pillow, charset-normalizer, reportlab 01:53:51 01:53:51 Successfully installed charset-normalizer-3.5.0 pillow-12.3.0 reportlab-5.0.0 01:53:51 + pip install omego 01:53:52 Collecting omego 01:53:52 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 01:53:53 Collecting future (from omego) 01:53:53 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 01:53:53 Collecting yaclifw>=0.1.1 (from omego) 01:53:53 Using cached yaclifw-0.2.0-py3-none-any.whl 01:53:53 Collecting six (from yaclifw>=0.1.1->omego) 01:53:53 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 01:53:53 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 01:53:53 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:53:53 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 01:53:53 Installing collected packages: six, future, yaclifw, omego 01:53:58 01:53:58 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 01:53:59 + pip install tables 01:54:00 Collecting tables 01:54:00 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 01:54:00 Collecting numpy>=1.20.0 (from tables) 01:54:00 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 01:54:00 Collecting numexpr>=2.6.2 (from tables) 01:54:00 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 01:54:00 Collecting packaging (from tables) 01:54:00 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 01:54:01 Collecting py-cpuinfo (from tables) 01:54:01 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 01:54:01 Collecting blosc2>=2.3.0 (from tables) 01:54:01 Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) 01:54:01 Collecting ndindex (from blosc2>=2.3.0->tables) 01:54:01 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 01:54:01 Collecting msgpack (from blosc2>=2.3.0->tables) 01:54:01 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 01:54:01 Collecting pydantic (from blosc2>=2.3.0->tables) 01:54:02 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB) 01:54:02 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 01:54:02 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 01:54:02 Collecting rich (from blosc2>=2.3.0->tables) 01:54:02 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 01:54:02 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 01:54:02 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) 01:54:02 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 01:54:02 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB) 01:54:02 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 01:54:02 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 01:54:02 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 01:54:02 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 01:54:03 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 01:54:03 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB) 01:54:03 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 01:54:03 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 01:54:03 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 01:54:03 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 01:54:03 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 01:54:03 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 01:54:03 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 01:54:03 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 01:54:03 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 01:54:03 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 01:54:03 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 01:54:03 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 01:54:04 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables) 01:54:04 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 01:54:04 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 01:54:04 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 01:54:04 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 01:54:04 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 01:54:04 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 01:54:04 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB) 01:54:05 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 01:54:05 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 01:54:05 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 01:54:05 Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.5 MB) 01:54:05 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 01:54:05 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 01:54:05 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 01:54:05 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 01:54:05 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 01:54:05 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 01:54:05 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 01:54:05 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 01:54:05 Using cached anyio-4.14.2-py3-none-any.whl (125 kB) 01:54:05 Using cached idna-3.18-py3-none-any.whl (65 kB) 01:54:05 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 01:54:05 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 01:54:05 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB) 01:54:05 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 01:54:05 Using cached packaging-26.3-py3-none-any.whl (129 kB) 01:54:05 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 01:54:05 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB) 01:54:05 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 01:54:05 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 01:54:05 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 01:54:05 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 01:54:05 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB) 01:54:05 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 01:54:05 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 01:54:05 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) 01:54:06 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 01:54:52 01:54:52 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.11.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.4 typing_extensions-4.16.0 01:54:52 + pip install jinja2 01:54:53 Collecting jinja2 01:54:53 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 01:54:53 Collecting MarkupSafe>=2.0 (from jinja2) 01:54:53 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 01:54:53 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 01:54:53 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 01:54:53 Installing collected packages: MarkupSafe, jinja2 01:54:54 01:54:54 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 01:54:54 + pip install omero-py 01:54:55 Collecting omero-py 01:54:55 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 01:54:55 Collecting appdirs (from omero-py) 01:54:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 01:54:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 01:54:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 01:54:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 01:54:56 Collecting PyYAML (from omero-py) 01:54:56 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 01:54:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:54:56 Collecting requests (from omero-py) 01:54:56 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 01:54:56 Collecting portalocker (from omero-py) 01:54:56 Using cached portalocker-4.1.0-py3-none-any.whl.metadata (11 kB) 01:54:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.0) 01:54:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18) 01:54:56 Collecting urllib3<3,>=1.26 (from requests->omero-py) 01:54:56 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) 01:54:56 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 01:54:56 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 01:54:56 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:54:56 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB) 01:54:56 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 01:54:56 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 01:54:56 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 01:54:56 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 01:55:14 01:55:14 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 urllib3-2.7.0 01:55:14 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 01:55:15 Collecting omero-metadata 01:55:15 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-ntmc_ia4/omero-metadata_8566a9dacfd9430f817512f7e7854d2f 01:55:15 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-ntmc_ia4/omero-metadata_8566a9dacfd9430f817512f7e7854d2f 01:55:16 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 3e6ae3307dc76eeab3d3bb6ee910201768258c4b 01:55:16 Installing build dependencies: started 01:55:18 Installing build dependencies: finished with status 'done' 01:55:18 Getting requirements to build wheel: started 01:55:18 Getting requirements to build wheel: finished with status 'done' 01:55:18 Preparing metadata (pyproject.toml): started 01:55:18 Preparing metadata (pyproject.toml): finished with status 'done' 01:55:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 01:55:18 Collecting pandas<3,>=2 (from omero-metadata) 01:55:19 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 01:55:19 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 01:55:19 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 01:55:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 01:55:19 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 01:55:19 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB) 01:55:19 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 01:55:19 Using cached tzdata-2026.3-py2.py3-none-any.whl.metadata (1.4 kB) 01:55:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 01:55:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 01:55:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 01:55:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 01:55:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 01:55:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 01:55:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.1.0) 01:55:19 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 01:55:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.0) 01:55:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18) 01:55:19 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) 01:55:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 01:55:19 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 01:55:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 01:55:19 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB) 01:55:19 Using cached tzdata-2026.3-py2.py3-none-any.whl (348 kB) 01:55:19 Building wheels for collected packages: omero-metadata 01:55:19 Building wheel for omero-metadata (pyproject.toml): started 01:55:20 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 01:55:20 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=aaeced45a1221921d09a27623898a6a510ce9bcfd24c2ab0d433474690f93925 01:55:20 Stored in directory: /tmp/pip-ephem-wheel-cache-5wu5d5_r/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 01:55:20 Successfully built omero-metadata 01:55:20 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 01:56:08 01:56:08 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.3 01:56:08 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 01:56:09 Collecting omero-cli-render 01:56:09 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-uzs1gwc8/omero-cli-render_682c3f45dfd145809ba8460bfb422e05 01:56:09 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-uzs1gwc8/omero-cli-render_682c3f45dfd145809ba8460bfb422e05 01:56:10 Running command git checkout -b merge_ci --track origin/merge_ci 01:56:11 Switched to a new branch 'merge_ci' 01:56:11 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:56:11 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit bcfc0f682246e19f9502f6375bde3fcb46d007c0 01:56:11 Installing build dependencies: started 01:56:12 Installing build dependencies: finished with status 'done' 01:56:12 Getting requirements to build wheel: started 01:56:12 Getting requirements to build wheel: finished with status 'done' 01:56:12 Preparing metadata (pyproject.toml): started 01:56:13 Preparing metadata (pyproject.toml): finished with status 'done' 01:56:13 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 01:56:13 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 01:56:13 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 01:56:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 01:56:13 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 01:56:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 01:56:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 01:56:13 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 01:56:13 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.1.0) 01:56:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.0) 01:56:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18) 01:56:13 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) 01:56:13 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 01:56:13 Building wheels for collected packages: omero-cli-render 01:56:13 Building wheel for omero-cli-render (pyproject.toml): started 01:56:13 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 01:56:13 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=c8da0e52b1212c87dc1ecc044082c5f03ae7bda60b9b62863ce60f64b209f217 01:56:13 Stored in directory: /tmp/pip-ephem-wheel-cache-lkd0ksge/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 01:56:13 Successfully built omero-cli-render 01:56:13 Installing collected packages: omero-cli-render 01:56:13 Successfully installed omero-cli-render-0.8.2.dev0 01:56:13 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 01:56:14 Collecting omero-cli-duplicate 01:56:14 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-nqwox8if/omero-cli-duplicate_35a33a96d518455dbe5022294f12aab2 01:56:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-nqwox8if/omero-cli-duplicate_35a33a96d518455dbe5022294f12aab2 01:56:15 Running command git checkout -b merge_ci --track origin/merge_ci 01:56:16 Switched to a new branch 'merge_ci' 01:56:16 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:56:16 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 40d31b3a4771b60312fb239bda4d33fd43585d52 01:56:16 Installing build dependencies: started 01:56:17 Installing build dependencies: finished with status 'done' 01:56:17 Getting requirements to build wheel: started 01:56:17 Getting requirements to build wheel: finished with status 'done' 01:56:17 Preparing metadata (pyproject.toml): started 01:56:17 Preparing metadata (pyproject.toml): finished with status 'done' 01:56:17 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 01:56:17 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 01:56:17 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 01:56:17 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 01:56:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 01:56:17 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 01:56:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 01:56:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 01:56:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.1.0) 01:56:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.0) 01:56:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18) 01:56:17 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 01:56:17 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 01:56:17 Building wheels for collected packages: omero-cli-duplicate 01:56:17 Building wheel for omero-cli-duplicate (pyproject.toml): started 01:56:18 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 01:56:18 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=328d9f19fae12e52c73b5d60bddc424458cc206b69b0d08569b7c0cd332cf65d 01:56:18 Stored in directory: /tmp/pip-ephem-wheel-cache-06kpqn6f/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 01:56:18 Successfully built omero-cli-duplicate 01:56:18 Installing collected packages: omero-cli-duplicate 01:56:18 Successfully installed omero-cli-duplicate-0.4.1.dev0 01:56:18 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 01:56:19 Collecting omero-cli-zarr 01:56:19 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-efs73j5p/omero-cli-zarr_a3428d61e9244f15a05378e7c0a73091 01:56:19 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-efs73j5p/omero-cli-zarr_a3428d61e9244f15a05378e7c0a73091 01:56:20 Running command git checkout -b merge_ci --track origin/merge_ci 01:56:20 Switched to a new branch 'merge_ci' 01:56:20 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:56:20 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 1dd4239c5fb681884065e6a09413e156433af18d 01:56:20 Installing build dependencies: started 01:56:22 Installing build dependencies: finished with status 'done' 01:56:22 Getting requirements to build wheel: started 01:56:22 Getting requirements to build wheel: finished with status 'done' 01:56:22 Installing backend dependencies: started 01:56:24 Installing backend dependencies: finished with status 'done' 01:56:24 Preparing metadata (pyproject.toml): started 01:56:24 Preparing metadata (pyproject.toml): finished with status 'done' 01:56:24 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 01:56:24 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 01:56:24 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 01:56:24 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 01:56:24 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:56:24 Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB) 01:56:24 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:56:24 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 01:56:25 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:25 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB) 01:56:25 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 01:56:25 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 01:56:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 01:56:25 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:56:26 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 01:56:26 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 01:56:26 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 01:56:26 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 01:56:26 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 01:56:26 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:56:26 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 01:56:26 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 01:56:26 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 01:56:26 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:26 Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB) 01:56:26 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:26 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 01:56:26 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 01:56:26 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:26 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 01:56:26 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 01:56:26 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:26 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB) 01:56:26 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:27 Using cached s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB) 01:56:27 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:27 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB) 01:56:27 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:27 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB) 01:56:27 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:27 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) 01:56:27 Requirement already satisfied: annotated-types>=0.6.0 in 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(from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:28 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) 01:56:28 Collecting botocore<1.43.57,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:28 Using cached botocore-1.43.56-py3-none-any.whl.metadata (5.6 kB) 01:56:28 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:28 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) 01:56:29 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:29 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 01:56:29 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scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:30 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB) 01:56:31 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:31 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB) 01:56:31 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:31 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 01:56:31 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:31 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB) 01:56:31 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:56:31 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB) 01:56:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.5.0) 01:56:31 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22) 01:56:31 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB) 01:56:31 Using cached dask-2026.7.1-py3-none-any.whl (1.5 MB) 01:56:31 Using cached click-8.4.2-py3-none-any.whl (119 kB) 01:56:31 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) 01:56:31 Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB) 01:56:31 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB) 01:56:31 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB) 01:56:31 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB) 01:56:31 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 01:56:31 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 01:56:31 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 01:56:31 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB) 01:56:31 Using cached aiobotocore-3.9.0-py3-none-any.whl (100 kB) 01:56:31 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 01:56:31 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 01:56:31 Using cached botocore-1.43.56-py3-none-any.whl (15.4 MB) 01:56:31 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 01:56:32 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 01:56:32 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB) 01:56:32 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB) 01:56:32 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 01:56:32 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 01:56:32 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 01:56:32 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 01:56:32 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) 01:56:32 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 01:56:32 Using cached imageio-2.37.4-py3-none-any.whl (318 kB) 01:56:32 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 01:56:32 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 01:56:32 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 01:56:32 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 01:56:32 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 01:56:32 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 01:56:32 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 01:56:32 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 01:56:32 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 01:56:32 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 01:56:32 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 01:56:32 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 01:56:32 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 01:56:32 Building wheels for collected packages: omero-cli-zarr 01:56:32 Building wheel for omero-cli-zarr (pyproject.toml): started 01:56:33 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 01:56:33 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev168+g1dd4239-py3-none-any.whl size=38402 sha256=41eb0482f3fefc25e3bea39e33589cfc2cd76d544d72d2f17d1d3798b8312afb 01:56:33 Stored in directory: /tmp/pip-ephem-wheel-cache-cg2tqqxe/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 01:56:33 Successfully built omero-cli-zarr 01:56:33 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 01:57:08 Attempting uninstall: pydantic-core 01:57:08 Found existing installation: pydantic_core 2.46.4 01:57:08 Uninstalling pydantic_core-2.46.4: 01:57:08 Successfully uninstalled pydantic_core-2.46.4 01:57:45 Attempting uninstall: pydantic 01:57:45 Found existing installation: pydantic 2.13.4 01:57:45 Uninstalling pydantic-2.13.4: 01:57:45 Successfully uninstalled pydantic-2.13.4 01:58:24 01:58:25 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev168+g1dd4239 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 01:58:25 + pip install omero-certificates 01:58:26 Collecting omero-certificates 01:58:26 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 01:58:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 01:58:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 01:58:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 01:58:26 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 01:58:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 01:58:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 01:58:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 01:58:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 01:58:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.1.0) 01:58:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.0) 01:58:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18) 01:58:26 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 01:58:26 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 01:58:26 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 01:58:27 Installing collected packages: omero-certificates 01:58:27 Successfully installed omero-certificates-0.4.0 01:58:27 + for x in *.tar.gz 01:58:27 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 01:58:28 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 01:58:28 Installing build dependencies: started 01:58:29 Installing build dependencies: finished with status 'done' 01:58:29 Getting requirements to build wheel: started 01:58:30 Getting requirements to build wheel: finished with status 'done' 01:58:30 Preparing metadata (pyproject.toml): started 01:58:30 Preparing metadata (pyproject.toml): finished with status 'done' 01:58:30 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 01:58:30 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 01:58:30 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 01:58:30 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 01:58:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 01:58:30 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 01:58:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 01:58:30 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 01:58:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.1.0) 01:58:30 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.0) 01:58:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18) 01:58:30 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 01:58:30 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 01:58:30 Building wheels for collected packages: omero-dropbox 01:58:30 Building wheel for omero-dropbox (pyproject.toml): started 01:58:30 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 01:58:30 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=9d1e36ec2e9e350998da4ee6d4e0076ed6428ad585b8f80cb10128f64d22949c 01:58:30 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 01:58:30 Successfully built omero-dropbox 01:58:31 Installing collected packages: omero-dropbox 01:58:31 Successfully installed omero-dropbox-5.7.1.dev0 01:58:31 + for x in *.tar.gz 01:58:31 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 01:58:32 Processing ./omero_marshal-0.9.2.dev0.tar.gz 01:58:32 Installing build dependencies: started 01:58:34 Installing build dependencies: finished with status 'done' 01:58:34 Getting requirements to build wheel: started 01:58:34 Getting requirements to build wheel: finished with status 'done' 01:58:34 Preparing metadata (pyproject.toml): started 01:58:34 Preparing metadata (pyproject.toml): finished with status 'done' 01:58:34 Building wheels for collected packages: omero_marshal 01:58:34 Building wheel for omero_marshal (pyproject.toml): started 01:58:35 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 01:58:35 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=5d6d232ae9cdc59f5ae3d551a1ebe64eba60568d295498a8e6e61b3fa7a7d573 01:58:35 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 01:58:35 Successfully built omero_marshal 01:58:35 Installing collected packages: omero_marshal 01:58:37 Successfully installed omero_marshal-0.9.2.dev0 01:58:37 + for x in *.tar.gz 01:58:37 + pip install -U omero_py-5.23.1.dev0.tar.gz 01:58:38 Processing ./omero_py-5.23.1.dev0.tar.gz 01:58:38 Installing build dependencies: started 01:58:40 Installing build dependencies: finished with status 'done' 01:58:40 Getting requirements to build wheel: started 01:58:40 Getting requirements to build wheel: finished with status 'done' 01:58:40 Preparing metadata (pyproject.toml): started 01:58:41 Preparing metadata (pyproject.toml): finished with status 'done' 01:58:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 01:58:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 01:58:41 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 01:58:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 01:58:41 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 01:58:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 01:58:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 01:58:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.1.0) 01:58:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.0) 01:58:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.18) 01:58:41 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0) 01:58:41 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 01:58:41 Building wheels for collected packages: omero-py 01:58:41 Building wheel for omero-py (pyproject.toml): started 01:58:42 Building wheel for omero-py (pyproject.toml): finished with status 'done' 01:58:42 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786986 sha256=53c01f369f4191d4cc5dfee601e540cab087135d7bbbd0f8bac9e8e31cbe38cf 01:58:42 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 01:58:42 Successfully built omero-py 01:58:42 Installing collected packages: omero-py 01:58:42 Attempting uninstall: omero-py 01:58:42 Found existing installation: omero-py 5.23.0 01:58:43 Uninstalling omero-py-5.23.0: 01:58:55 Successfully uninstalled omero-py-5.23.0 01:59:10 Successfully installed omero-py-5.23.1.dev0 01:59:10 + for x in *.tar.gz 01:59:10 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 01:59:11 Processing ./omero_scripts-5.10.1.dev0.tar.gz 01:59:11 Installing build dependencies: started 01:59:12 Installing build dependencies: finished with status 'done' 01:59:12 Getting requirements to build wheel: started 01:59:13 Getting requirements to build wheel: finished with status 'done' 01:59:13 Preparing metadata (pyproject.toml): started 01:59:13 Preparing metadata (pyproject.toml): finished with status 'done' 01:59:13 Building wheels for collected packages: omero-scripts 01:59:13 Building wheel for omero-scripts (pyproject.toml): started 01:59:13 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 01:59:13 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=af9aab458642b0777c1311fd18c1ee8b09415ec7e76b3e9f58a4cced5ebf54be 01:59:13 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 01:59:13 Successfully built omero-scripts 01:59:14 Installing collected packages: omero-scripts 01:59:14 Successfully installed omero-scripts-5.10.1.dev0 01:59:15 + for x in *.tar.gz 01:59:15 + pip install -U omero_web-5.32.1.dev0.tar.gz 01:59:15 Processing ./omero_web-5.32.1.dev0.tar.gz 01:59:16 Installing build dependencies: started 01:59:17 Installing build dependencies: finished with status 'done' 01:59:17 Getting requirements to build wheel: started 01:59:18 Getting requirements to build wheel: finished with status 'done' 01:59:18 Preparing metadata (pyproject.toml): started 01:59:18 Preparing metadata (pyproject.toml): finished with status 'done' 01:59:18 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0) 01:59:18 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0) 01:59:18 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 01:59:18 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0) 01:59:18 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB) 01:59:18 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0) 01:59:18 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 01:59:18 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0) 01:59:18 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 01:59:19 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0) 01:59:19 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 01:59:19 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0) 01:59:19 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB) 01:59:19 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0) 01:59:19 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0) 01:59:19 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (2026.3.post1) 01:59:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.1.0) 01:59:19 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.3) 01:59:19 Collecting importlib-resources (from omero-web==5.32.1.dev0) 01:59:19 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 01:59:19 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 01:59:19 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 01:59:19 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 01:59:19 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 01:59:19 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1) 01:59:19 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) 01:59:19 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 01:59:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4) 01:59:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0) 01:59:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6) 01:59:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3) 01:59:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5) 01:59:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2) 01:59:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.5.0) 01:59:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18) 01:59:19 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0) 01:59:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22) 01:59:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 01:59:19 Using cached django-5.2.17-py3-none-any.whl (8.3 MB) 01:59:19 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 01:59:19 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 01:59:19 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 01:59:19 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB) 01:59:19 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 01:59:19 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 01:59:20 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 01:59:20 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 01:59:20 Building wheels for collected packages: omero-web 01:59:20 Building wheel for omero-web (pyproject.toml): started 01:59:21 Building wheel for omero-web (pyproject.toml): finished with status 'done' 01:59:21 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820231 sha256=bcc447660bc36aa905cf2c4ea1733c93381d2bd103b834a41fa7794bbbcaf4f4 01:59:21 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f 01:59:21 Successfully built omero-web 01:59:21 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 02:00:23 02:00:23 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 02:00:23 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 02:00:23 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 02:00:23 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 02:00:23 --2026-08-15 02:00:23-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 02:00:23 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.111.133, 185.199.108.133, ... 02:00:23 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. 02:00:23 HTTP request sent, awaiting response... 200 OK 02:00:23 Length: 139340 (136K) [text/plain] 02:00:23 Saving to: ‘Figure_To_Pdf.py’ 02:00:23 02:00:23 0K .......... .......... .......... .......... .......... 36% 2.88M 0s 02:00:24 50K .......... .......... .......... .......... .......... 73% 5.07M 0s 02:00:24 100K .......... .......... .......... ...... 100% 6.10M=0.03s 02:00:24 02:00:24 2026-08-15 02:00:24 (4.10 MB/s) - ‘Figure_To_Pdf.py’ saved [139340/139340] 02:00:24 02:00:24 + chmod 755 Figure_To_Pdf.py 02:00:24 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 02:00:24 + omero config set omero.db.name OMERO-server 02:00:31 + omero config set omero.db.host pg 02:00:36 + omero config set omero.db.user postgres 02:00:42 + omero config set omero.data.dir /home/omero/omero-server-data 02:00:48 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 02:00:53 + omero config set omero.db.poolsize 25 02:00:58 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 02:01:04 + omero config set omero.security.trustStorePassword changeit 02:01:09 + omero config set omero.mail.config true 02:01:15 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 02:01:20 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 02:01:25 + omero certificates 02:01:30 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 02:01:30 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 02:01:31 + '[' false = true ']' 02:01:31 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 02:01:31 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 02:01:31 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 02:01:31 2026-08-15 02:01:31,412 [ omego.db] DEBUG dbcommand => upgrade 02:01:31 2026-08-15 02:01:31,412 [ omego.db] DEBUG dbhost => localhost 02:01:31 2026-08-15 02:01:31,413 [ omego.db] DEBUG dbname => OMERO-server 02:01:31 2026-08-15 02:01:31,413 [ omego.db] DEBUG dbpass => omero 02:01:31 2026-08-15 02:01:31,413 [ omego.db] DEBUG dbuser => omero 02:01:31 2026-08-15 02:01:31,413 [ omego.db] DEBUG rootpass => omero 02:01:31 2026-08-15 02:01:31,413 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 02:01:31 2026-08-15 02:01:31,414 [omego.extern] INFO Executing : omero version 02:01:36 OMERO.py version: 02:01:36 OMERO.server version: 02:01:36 5.6.3-643-fe2469f5c9-ice36-b48 02:01:36 5.23.1.dev0 02:01:36 2026-08-15 02:01:36,855 [omego.extern] INFO Completed [5.440 s] 02:01:36 2026-08-15 02:01:36,855 [omego.extern] DEBUG Using omero CLI from omero 02:01:36 2026-08-15 02:01:36,855 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 02:01:36 2026-08-15 02:01:36,855 [omego.extern] INFO Running [current environment]: omero config get --show-password 02:01:36 2026-08-15 02:01:36,855 [omego.extern] INFO Executing : omero config get --show-password 02:01:42 2026-08-15 02:01:42,243 [omego.extern] INFO Completed [5.388 s] 02:01:42 2026-08-15 02:01:42,243 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 02:01:42 2026-08-15 02:01:42,243 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 02:01:42 2026-08-15 02:01:42,249 [omego.extern] INFO Completed [0.006 s] 02:01:42 2026-08-15 02:01:42,249 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 02:01:42 2026-08-15 02:01:42,249 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 02:01:42 02:01:42 2026-08-15 02:01:42,250 [omego.extern] INFO Running [current environment]: omero config get --show-password 02:01:42 2026-08-15 02:01:42,250 [omego.extern] INFO Executing : omero config get --show-password 02:01:47 2026-08-15 02:01:47,847 [omego.extern] INFO Completed [5.598 s] 02:01:47 2026-08-15 02:01:47,847 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 02:01:47 2026-08-15 02:01:47,848 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 02:01:47 2026-08-15 02:01:47,861 [omego.extern] INFO Completed [0.014 s] 02:01:47 2026-08-15 02:01:47,861 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n' 02:01:47 2026-08-15 02:01:47,862 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 02:01:47 2026-08-15 02:01:47,862 [omego.extern] INFO Running [current environment]: omero config get --show-password 02:01:47 2026-08-15 02:01:47,862 [omego.extern] INFO Executing : omero config get --show-password 02:01:52 2026-08-15 02:01:52,994 [omego.extern] INFO Completed [5.132 s] 02:01:52 2026-08-15 02:01:52,994 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 02:01:52 2026-08-15 02:01:52,994 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 02:01:53 2026-08-15 02:01:53,020 [omego.extern] INFO Completed [0.026 s] 02:01:53 2026-08-15 02:01:53,021 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 02:01:53 2026-08-15 02:01:53,021 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 02:01:53 2026-08-15 02:01:53,090 [ omego.db] INFO Database is already at OMERO5.4__0 02:01:53 + export LANG=en_US.UTF-8 02:01:53 + LANG=en_US.UTF-8 02:01:53 + export LANGUAGE=en_US:en 02:01:53 + LANGUAGE=en_US:en 02:01:53 + export LC_ALL=en_US.UTF-8 02:01:53 + LC_ALL=en_US.UTF-8 02:01:53 + BUILD_ID=DONT_KILL_ME 02:01:53 + omero admin start 02:02:04 No descriptor given. Using etc/grid/default.xml 02:02:16 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 02:02:16 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 02:02:16 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 02:02:16 Waiting on startup. Use CTRL-C to exit 02:02:17 + omero admin waitup 02:02:22 Waiting on startup. Use CTRL-C to exit 02:02:22 + omero admin diagnostics 02:02:29 02:02:29 ================================================================================ 02:02:29 OMERO Diagnostics (admin) 02:02:29 ================================================================================ 02:02:29 02:02:29 Commands: java -version 21.0.12 (/usr/bin/java) 02:02:30 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 02:02:30 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 02:02:30 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 02:02:30 Commands: psql --version 16.14 (/usr/bin/psql) 02:02:30 Commands: openssl version 3.5.527 (/usr/bin/openssl) 02:02:30 02:02:30 Component: OMERO.py 5.23.1.dev0 02:02:30 Component: OMERO.server 5.6.3-643-fe2469f5c9-ice36-b48 02:02:30 02:02:30 Server: icegridnode running 02:02:30 Server: Blitz-0 active (pid = 47788, enabled) 02:02:30 Server: Indexer-0 active (pid = 47822, enabled) 02:02:30 Server: OMERO.Glacier2 active (pid = 47810, enabled) 02:02:30 Server: OMERO.IceStorm active (pid = 47821, enabled) 02:02:30 Server: Processor-0 active (pid = 47814, enabled) 02:02:30 Server: Tables-0 active (pid = 47833, enabled) 02:02:30 02:02:30 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 02:02:30 Log files: Blitz-0.log 32.1 KB errors=0 warnings=1 02:02:30 Log files: DropBox.log n/a 02:02:30 Log files: FileServer.log n/a 02:02:30 Log files: Indexer-0.log 2.6 KB 02:02:30 Log files: MonitorServer.log n/a 02:02:30 Log files: Processor-0.log 856 B 02:02:30 Log files: Tables-0.log 1.1 KB 02:02:30 Log files: TestDropBox.log n/a 02:02:30 Log files: master.err empty 02:02:30 Log files: master.out 30.5 KB 02:02:30 Log files: Total size 0.07 MB 02:02:30 02:02:30 02:02:30 Environment:OMERO_HOME=(unset) 02:02:30 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 02:02:30 Environment:OMERO_NODE=(unset) 02:02:30 Environment:OMERO_MASTER=(unset) 02:02:30 Environment:OMERO_USERDIR=(unset) 02:02:30 Environment:OMERO_TMPDIR=(unset) 02:02:30 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:02:30 Environment:PYTHONPATH=(unset) 02:02:30 Environment:ICE_HOME=/opt/ice-3.6.5 02:02:30 Environment:LD_LIBRARY_PATH=(unset) 02:02:30 Environment:DYLD_LIBRARY_PATH=(unset) 02:02:30 02:02:30 OMERO SSL port:4064 02:02:30 OMERO TCP port:4063 02:02:30 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 02:02:30 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 02:02:30 02:02:30 JVM settings: Blitz-${index} -Xmx7200m 02:02:30 JVM settings: Indexer-${index} -Xmx4800m 02:02:30 JVM settings: PixelData-${index} -Xmx7200m 02:02:30 JVM settings: Repository-${index} -Xmx4800m 02:02:30 02:02:30 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 02:02:30 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 02:02:30 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 02:02:30 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 02:02:30 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 02:02:30 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 02:02:30 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 02:02:30 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 02:02:30 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 02:02:30 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 02:02:30 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 02:02:30 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 02:02:30 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 02:02:30 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 02:02:30 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 02:02:30 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 02:02:30 + deactivate 02:02:30 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 02:02:30 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:02:30 + export PATH 02:02:30 + unset _OLD_VIRTUAL_PATH 02:02:30 + '[' -n '' ']' 02:02:30 + hash -r 02:02:30 + '[' -n '' ']' 02:02:30 + unset VIRTUAL_ENV 02:02:30 + unset VIRTUAL_ENV_PROMPT 02:02:30 + '[' '!' '' = nondestructive ']' 02:02:30 + unset -f deactivate 02:02:30 Finished: SUCCESS