Started by upstream project "Trigger" build number 516 originally caused by: Started by user devspace Running as SYSTEM Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server [OMERO-server] $ /bin/bash -xe /tmp/jenkins14006373733362711093.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERO_DATA_DIR=/home/omero/omero-server-data + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + omero admin stop Server not running + echo not running not running + sleep 5 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate + rm -rf /home/omero/workspace/OMERO-server/.venv3 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo' Skipping PURGE_DATA:CleanDbAndRepo + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.20.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties Copied 1 artifact from "OMERO-build" build number 440 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 433 Copied 2 artifacts from "OMERO-build-build" build number 461 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10612790521216491789.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DATA_DIR=/home/omero/omero-server-data + mkdir -p /home/omero/omero-server-data + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties ++ ls OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip + ZIP=OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip + '[' '!' -z '' ']' + DIST=OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440 + unzip OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip Archive: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/blitz/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/grid/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/profiles/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/error/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/janelia/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/matplotlib/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/ncsa_paledit/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/seaborn/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/wcif/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/analysis_scripts/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/annotation_scripts/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/export_scripts/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/figure_scripts/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/import_scripts/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/util_scripts/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/server/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/misc/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__1/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__10/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__11/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__2/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__3/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__4/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__5/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__6/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__7/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__8/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__9/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3__4/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3__5/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3__6/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3__7/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.1__0/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.2__0/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.2__0/t/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.3__0/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.4__0/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4__0/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.0__0/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.1__1/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.2__0/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4DEV__1/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4DEV__2/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4DEV__3/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/ creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/var/ inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/LICENSE.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/backup.cfg inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/blitz/mail-senders.example inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/blitz/mail-server.example inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/build.properties inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/env.bat inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/env.sh inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/hibernate.properties inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/ice.config inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/logback-cli.xml inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/logback-indexing-cli.xml inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/logback-indexing.xml inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/logback.xml inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/mime.types inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/node1.cfg inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/node2.cfg inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/omero.properties inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/profiles/psql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/rollover.cfg inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/Windows.cfg inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/error/maintainance.html inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/README inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/default.xml inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/templates.xml inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/windefault.xml inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/ice.config inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/internal.cfg inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/master.cfg inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/robot.template inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/testdropbox.config inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/history.rst inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/OMEZarrReader.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/accessors-smart.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/activation.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aggdesigner-algorithm.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aircompressor.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/antlr.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aopalliance.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/apiguardian-api.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/asm.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/avatica-core.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/avatica-metrics.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aws-java-sdk-core.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aws-java-sdk-kms.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aws-java-sdk-s3.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/base.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-anim.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-awt-util.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-bridge.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-codec.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-constants.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-css.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-dom.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-ext.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-gvt.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-i18n.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-parser.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-script.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-shared-resources.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-svg-dom.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-svggen.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-transcoder.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-util.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-xml.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/btm.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/calcite-core.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/calcite-linq4j.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/cdm-core.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/checker-qual.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-beanutils.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-codec.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-collections.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-collections4.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-compiler.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-dbcp2.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-io.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-lang.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-lang3.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-logging.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-math.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-math3.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/commons-pool2.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/dom4j.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/ehcache.jar inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/error_prone_annotations.jar inflating: 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OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/README inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/agpl.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/antlr.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/apache-v1.1.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/apache-v2.0.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/asm.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/bouncy_castle_license.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/bsd.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/cddl-v1.0.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/cpl-v10.html inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/crystalclear.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/django.txt 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inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/lgpl-3.0.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/lgpl-v2.0.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/lgpl-v2.1.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/lgpl-v3.0.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/lgpl.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/matplotlib.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/mit.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/mpl-v1_0.htm inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/npl-1_1.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/path.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/pil.txt inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/postgresql.txt 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OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.1__1/OMERO5.1__0.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.2__0/OMERO5.1__1.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/OMERO5.2__0.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql inflating: 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inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/psql-footer.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/psql-header.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/schema.sql inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/views.sql + rm -f OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440 /home/omero/workspace/OMERO-server/OMERO.server + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server/ https://artifacts.glencoesoftware.com:443/artifactory/omero-plus/com/glencoesoftware/omero/omero-zarr-pixel-buffer/0.4.1/omero-zarr-pixel-buffer-0.4.1.jar --2025-06-12 06:31:16-- https://artifacts.glencoesoftware.com/artifactory/omero-plus/com/glencoesoftware/omero/omero-zarr-pixel-buffer/0.4.1/omero-zarr-pixel-buffer-0.4.1.jar Resolving artifacts.glencoesoftware.com (artifacts.glencoesoftware.com)... 67.205.169.144, 2604:a880:400:d0::19b7:6001 Connecting to artifacts.glencoesoftware.com (artifacts.glencoesoftware.com)|67.205.169.144|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 26159 (26K) [application/java-archive] Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.4.1.jar’ 0K .......... .......... ..... 100% 82.6M=0s 2025-06-12 06:31:17 (82.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.4.1.jar’ saved [26159/26159] + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar --2025-06-12 06:31:17-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 889211 (868K) [application/java-archive] Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ 0K .......... .......... .......... .......... .......... 5% 3.91M 0s 50K .......... .......... .......... .......... .......... 11% 5.93M 0s 100K .......... .......... .......... .......... .......... 17% 21.7M 0s 150K .......... .......... .......... .......... .......... 23% 26.4M 0s 200K .......... .......... .......... .......... .......... 28% 6.97M 0s 250K .......... .......... .......... .......... .......... 34% 62.8M 0s 300K .......... .......... .......... .......... .......... 40% 25.8M 0s 350K .......... .......... .......... .......... .......... 46% 94.9M 0s 400K .......... .......... .......... .......... .......... 51% 28.1M 0s 450K .......... .......... .......... .......... .......... 57% 10.3M 0s 500K .......... .......... .......... .......... .......... 63% 20.8M 0s 550K .......... .......... .......... .......... .......... 69% 155M 0s 600K .......... .......... .......... .......... .......... 74% 30.7M 0s 650K .......... .......... .......... .......... .......... 80% 26.4M 0s 700K .......... .......... .......... .......... .......... 86% 9.26M 0s 750K .......... .......... .......... .......... .......... 92% 32.0M 0s 800K .......... .......... .......... .......... .......... 97% 115M 0s 850K .......... ........ 100% 13.9M=0.06s 2025-06-12 06:31:17 (15.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211] + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar --2025-06-12 06:31:17-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 73309 (72K) [application/java-archive] Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ 0K .......... .......... .......... .......... .......... 69% 3.80M 0s 50K .......... .......... . 100% 22.9M=0.01s 2025-06-12 06:31:18 (5.08 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309] + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar --2025-06-12 06:31:18-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 63303 (62K) [application/java-archive] Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ 0K .......... .......... .......... .......... .......... 80% 4.26M 0s 50K .......... . 100% 11.9M=0.01s 2025-06-12 06:31:18 (4.85 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303] + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar --2025-06-12 06:31:18-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 1271272 (1.2M) [application/java-archive] Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ 0K .......... .......... .......... .......... .......... 4% 4.21M 0s 50K .......... .......... .......... .......... .......... 8% 5.31M 0s 100K .......... .......... .......... .......... .......... 12% 21.5M 0s 150K .......... .......... .......... .......... .......... 16% 25.7M 0s 200K .......... .......... .......... .......... .......... 20% 7.88M 0s 250K .......... .......... .......... .......... .......... 24% 33.2M 0s 300K .......... .......... .......... .......... .......... 28% 27.6M 0s 350K .......... .......... .......... .......... .......... 32% 86.3M 0s 400K .......... .......... .......... .......... .......... 36% 23.5M 0s 450K .......... .......... .......... .......... .......... 40% 10.7M 0s 500K .......... .......... .......... .......... .......... 44% 21.8M 0s 550K .......... .......... .......... .......... .......... 48% 118M 0s 600K .......... .......... .......... .......... .......... 52% 33.5M 0s 650K .......... .......... .......... .......... .......... 56% 24.4M 0s 700K .......... .......... .......... .......... .......... 60% 9.23M 0s 750K .......... .......... .......... .......... .......... 64% 35.7M 0s 800K .......... .......... .......... .......... .......... 68% 145M 0s 850K .......... .......... .......... .......... .......... 72% 28.0M 0s 900K .......... .......... .......... .......... .......... 76% 26.7M 0s 950K .......... .......... .......... .......... .......... 80% 9.36M 0s 1000K .......... .......... .......... .......... .......... 84% 155M 0s 1050K .......... .......... .......... .......... .......... 88% 36.1M 0s 1100K .......... .......... .......... .......... .......... 92% 27.3M 0s 1150K .......... .......... .......... .......... .......... 96% 8.50M 0s 1200K .......... .......... .......... .......... . 100% 178M=0.07s 2025-06-12 06:31:18 (16.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272] + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + pip install -U pip Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.1.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.1.1 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 17.8 MB/s eta 0:00:00 Installing collected packages: zeroc-ice Successfully installed zeroc-ice-3.6.5 + pip install markdown Collecting markdown Using cached markdown-3.8-py3-none-any.whl.metadata (5.1 kB) Using cached markdown-3.8-py3-none-any.whl (106 kB) Installing collected packages: markdown Successfully installed markdown-3.8 + pip install reportlab Collecting reportlab Using cached reportlab-4.4.1-py3-none-any.whl.metadata (1.8 kB) Collecting pillow>=9.0.0 (from reportlab) Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (8.9 kB) Collecting chardet (from reportlab) Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) Using cached reportlab-4.4.1-py3-none-any.whl (2.0 MB) Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) Using cached chardet-5.2.0-py3-none-any.whl (199 kB) Installing collected packages: pillow, chardet, reportlab Successfully installed chardet-5.2.0 pillow-11.2.1 reportlab-4.4.1 + pip install pyarrow Collecting pyarrow Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB) Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.3 MB) Installing collected packages: pyarrow Successfully installed pyarrow-20.0.0 + pip install omego Collecting omego Using cached omego-0.7.0-py3-none-any.whl Collecting future (from omego) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting yaclifw>=0.1.1 (from omego) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting six (from yaclifw>=0.1.1->omego) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: six, future, yaclifw, omego Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 + pip install tables Collecting tables Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) Collecting numpy>=1.20.0 (from tables) Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (62 kB) Collecting numexpr>=2.6.2 (from tables) Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) Collecting packaging (from tables) Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB) Collecting py-cpuinfo (from tables) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting blosc2>=2.3.0 (from tables) Using cached blosc2-3.3.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB) Collecting typing-extensions>=4.4.0 (from tables) Using cached typing_extensions-4.14.0-py3-none-any.whl.metadata (3.0 kB) Collecting ndindex (from blosc2>=2.3.0->tables) Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB) Collecting msgpack (from blosc2>=2.3.0->tables) Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) Collecting platformdirs (from blosc2>=2.3.0->tables) Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB) Collecting requests (from blosc2>=2.3.0->tables) Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB) Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables) Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) Using cached urllib3-2.4.0-py3-none-any.whl.metadata (6.5 kB) Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) Using cached certifi-2025.4.26-py3-none-any.whl.metadata (2.5 kB) Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) Using cached blosc2-3.3.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB) Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB) Using cached typing_extensions-4.14.0-py3-none-any.whl (43 kB) Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB) Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB) Using cached packaging-25.0-py3-none-any.whl (66 kB) Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB) Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) Using cached requests-2.32.4-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached urllib3-2.4.0-py3-none-any.whl (128 kB) Using cached certifi-2025.4.26-py3-none-any.whl (159 kB) Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, charset_normalizer, certifi, requests, numexpr, blosc2, tables Successfully installed blosc2-3.3.4 certifi-2025.4.26 charset_normalizer-3.4.2 idna-3.10 msgpack-1.1.0 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.0 packaging-25.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.0 urllib3-2.4.0 + pip install jinja2 Collecting jinja2 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) Collecting MarkupSafe>=2.0 (from jinja2) Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Installing collected packages: MarkupSafe, jinja2 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6 + pip install omero-py Collecting omero-py Using cached omero_py-5.20.0-py3-none-any.whl.metadata (6.5 kB) Collecting urllib3<2 (from omero-py) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting appdirs (from omero-py) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.2.1) Collecting PyYAML (from omero-py) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.4) Collecting portalocker (from omero-py) Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.4.26) Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) Installing collected packages: appdirs, urllib3, PyYAML, portalocker, omero-py Attempting uninstall: urllib3 Found existing installation: urllib3 2.4.0 Uninstalling urllib3-2.4.0: Successfully uninstalled urllib3-2.4.0 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 omero-py-5.20.0 portalocker-3.1.1 urllib3-1.26.20 + pip install git+https://github.com/dominikl/omero-cli-zarr.git@extinfo#egg=omero-cli-zarr Collecting omero-cli-zarr Cloning https://github.com/dominikl/omero-cli-zarr.git (to revision extinfo) to /tmp/pip-install-yclbrz9e/omero-cli-zarr_b5c51e1f5e5641fe82ae1497631944f4 Running command git clone --filter=blob:none --quiet https://github.com/dominikl/omero-cli-zarr.git /tmp/pip-install-yclbrz9e/omero-cli-zarr_b5c51e1f5e5641fe82ae1497631944f4 Running command git checkout -b extinfo --track origin/extinfo Switched to a new branch 'extinfo' branch 'extinfo' set up to track 'origin/extinfo'. Resolved https://github.com/dominikl/omero-cli-zarr.git to commit 38b38f9e1ebaab0a72ed370fc9378d86f2d9b2e8 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.20.0) Collecting ome-zarr>=0.5.0 (from omero-cli-zarr) Using cached ome_zarr-0.11.1-py3-none-any.whl.metadata (2.9 kB) Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.5.0->omero-cli-zarr) (2.3.0) Collecting dask (from ome-zarr>=0.5.0->omero-cli-zarr) Using cached dask-2025.5.1-py3-none-any.whl.metadata (3.8 kB) Collecting zarr<3,>=2.8.1 (from ome-zarr>=0.5.0->omero-cli-zarr) Using cached zarr-2.18.7-py3-none-any.whl.metadata (5.8 kB) Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) Using cached fsspec-2025.5.1-py3-none-any.whl.metadata (11 kB) Collecting aiohttp<4 (from ome-zarr>=0.5.0->omero-cli-zarr) Using cached aiohttp-3.12.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.6 kB) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.5.0->omero-cli-zarr) (2.32.4) Collecting scikit-image (from ome-zarr>=0.5.0->omero-cli-zarr) Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB) Collecting toolz (from ome-zarr>=0.5.0->omero-cli-zarr) Using cached toolz-1.0.0-py3-none-any.whl.metadata (5.1 kB) Collecting aiohappyeyeballs>=2.5.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB) Collecting aiosignal>=1.1.2 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) Using cached aiosignal-1.3.2-py2.py3-none-any.whl.metadata (3.8 kB) Collecting attrs>=17.3.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) Using cached attrs-25.3.0-py3-none-any.whl.metadata (10 kB) Collecting frozenlist>=1.1.1 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB) Collecting multidict<7.0,>=4.5 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) Using cached multidict-6.4.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.3 kB) Collecting propcache>=0.2.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB) Collecting yarl<2.0,>=1.17.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (73 kB) Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) (3.10) Collecting asciitree (from zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr) Using cached asciitree-0.3.3-py3-none-any.whl Collecting fasteners (from zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr) Using cached fasteners-0.19-py3-none-any.whl.metadata (4.9 kB) Collecting numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0 (from zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr) Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB) Collecting deprecated (from numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr) Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB) Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) Using cached s3fs-2025.5.1-py3-none-any.whl.metadata (1.9 kB) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (11.2.1) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.1.1) Collecting click>=8.1 (from dask->ome-zarr>=0.5.0->omero-cli-zarr) Using cached click-8.2.1-py3-none-any.whl.metadata (2.5 kB) Collecting cloudpickle>=3.0.0 (from dask->ome-zarr>=0.5.0->omero-cli-zarr) Using cached cloudpickle-3.1.1-py3-none-any.whl.metadata (7.1 kB) Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask->ome-zarr>=0.5.0->omero-cli-zarr) (25.0) Collecting partd>=1.4.0 (from dask->ome-zarr>=0.5.0->omero-cli-zarr) Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr>=0.5.0->omero-cli-zarr) Using cached importlib_metadata-8.7.0-py3-none-any.whl.metadata (4.8 kB) Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr>=0.5.0->omero-cli-zarr) Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB) Collecting locket (from partd>=1.4.0->dask->ome-zarr>=0.5.0->omero-cli-zarr) Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) Collecting wrapt<2,>=1.10 (from deprecated->numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.5.0->omero-cli-zarr) (3.4.2) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.5.0->omero-cli-zarr) (2025.4.26) Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) Using cached aiobotocore-2.22.0-py3-none-any.whl.metadata (24 kB) Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) Using cached aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB) Collecting botocore<1.37.4,>=1.37.2 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) Using cached botocore-1.37.3-py3-none-any.whl.metadata (5.7 kB) Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) (1.17.0) Collecting scipy>=1.11.4 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr) Using cached scipy-1.15.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Collecting networkx>=3.0 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr) Using cached networkx-3.5-py3-none-any.whl.metadata (6.3 kB) Collecting imageio!=2.35.0,>=2.33 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr) Using cached imageio-2.37.0-py3-none-any.whl.metadata (5.2 kB) Collecting tifffile>=2022.8.12 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr) Downloading tifffile-2025.6.11-py3-none-any.whl.metadata (32 kB) Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr) Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB) Using cached ome_zarr-0.11.1-py3-none-any.whl (40 kB) Using cached aiohttp-3.12.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB) Using cached multidict-6.4.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (223 kB) Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (348 kB) Using cached zarr-2.18.7-py3-none-any.whl (211 kB) Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB) Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB) Using cached aiosignal-1.3.2-py2.py3-none-any.whl (7.6 kB) Using cached attrs-25.3.0-py3-none-any.whl (63 kB) Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (235 kB) Using cached fsspec-2025.5.1-py3-none-any.whl (199 kB) Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (213 kB) Using cached dask-2025.5.1-py3-none-any.whl (1.5 MB) Using cached click-8.2.1-py3-none-any.whl (102 kB) Using cached cloudpickle-3.1.1-py3-none-any.whl (20 kB) Using cached importlib_metadata-8.7.0-py3-none-any.whl (27 kB) Using cached partd-1.4.2-py3-none-any.whl (18 kB) Using cached toolz-1.0.0-py3-none-any.whl (56 kB) Using cached zipp-3.23.0-py3-none-any.whl (10 kB) Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB) Using cached fasteners-0.19-py3-none-any.whl (18 kB) Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) Using cached s3fs-2025.5.1-py3-none-any.whl (30 kB) Using cached aiobotocore-2.22.0-py3-none-any.whl (78 kB) Using cached aioitertools-0.12.0-py3-none-any.whl (24 kB) Using cached botocore-1.37.3-py3-none-any.whl (13.3 MB) Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.8 MB) Using cached imageio-2.37.0-py3-none-any.whl (315 kB) Using cached lazy_loader-0.4-py3-none-any.whl (12 kB) Using cached networkx-3.5-py3-none-any.whl (2.0 MB) Using cached scipy-1.15.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (37.7 MB) Downloading tifffile-2025.6.11-py3-none-any.whl (230 kB) Building wheels for collected packages: omero-cli-zarr Building wheel for omero-cli-zarr (pyproject.toml): started Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.0.2.dev452+g38b38f9-py3-none-any.whl size=31066 sha256=b1d87e0c9ad60276dfdad217b4b826913df5966e3defe606fa847c8caf1b4c4b Stored in directory: /tmp/pip-ephem-wheel-cache-h1f330uw/wheels/dd/b9/0c/0415f7fe907b9498563db54fc83efe934b62c0a5e710ef7b23 Successfully built omero-cli-zarr Installing collected packages: asciitree, zipp, wrapt, toolz, tifffile, scipy, python-dateutil, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, fsspec, frozenlist, fasteners, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, importlib_metadata, deprecated, botocore, aiosignal, numcodecs, dask, aiohttp, zarr, aiobotocore, s3fs, ome-zarr, omero-cli-zarr Successfully installed aiobotocore-2.22.0 aiohappyeyeballs-2.6.1 aiohttp-3.12.12 aioitertools-0.12.0 aiosignal-1.3.2 asciitree-0.3.3 attrs-25.3.0 botocore-1.37.3 click-8.2.1 cloudpickle-3.1.1 dask-2025.5.1 deprecated-1.2.18 fasteners-0.19 frozenlist-1.7.0 fsspec-2025.5.1 imageio-2.37.0 importlib_metadata-8.7.0 jmespath-1.0.1 lazy-loader-0.4 locket-1.0.0 multidict-6.4.4 networkx-3.5 numcodecs-0.15.1 ome-zarr-0.11.1 omero-cli-zarr-0.0.2.dev452+g38b38f9 partd-1.4.2 propcache-0.3.2 python-dateutil-2.9.0.post0 s3fs-2025.5.1 scikit-image-0.25.2 scipy-1.15.3 tifffile-2025.6.11 toolz-1.0.0 wrapt-1.17.2 yarl-1.20.1 zarr-2.18.7 zipp-3.23.0 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata Collecting omero-metadata Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-knbf5a5q/omero-metadata_a1b541d90a5144d3b0ccda56818d5832 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-knbf5a5q/omero-metadata_a1b541d90a5144d3b0ccda56818d5832 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit f60a2e6544d3bc7ea6208c1438e2ee8501057687 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.20.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2) Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) Collecting pandas (from omero-metadata) Using cached pandas-2.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (91 kB) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.2.1) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1) Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2) Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0) Collecting pytz>=2020.1 (from pandas->omero-metadata) Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas->omero-metadata) Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.4.26) Using cached pandas-2.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB) Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB) Building wheels for collected packages: omero-metadata Building wheel for omero-metadata (pyproject.toml): started Building wheel for omero-metadata (pyproject.toml): finished with status 'done' Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=43abb46e6ed8abe11040f23e3725057d31a51c51f93d920693814c87988d1853 Stored in directory: /tmp/pip-ephem-wheel-cache-la9ufs0i/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b Successfully built omero-metadata Installing collected packages: pytz, tzdata, pandas, omero-metadata Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.0 pytz-2025.2 tzdata-2025.2 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render Collecting omero-cli-render Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-_aux8vjo/omero-cli-render_035cbf99a9104a388e7d0c611533f5a7 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-_aux8vjo/omero-cli-render_035cbf99a9104a388e7d0c611533f5a7 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 5a717264c80abc43e120d96a3b36527a6b2bfc7a Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.20.0) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.2.1) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.4.26) Building wheels for collected packages: omero-cli-render Building wheel for omero-cli-render (pyproject.toml): started Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=d04c0501283ec86fa26d13febf652a8d26de0d895b6b5d56bbffeccddc28e851 Stored in directory: /tmp/pip-ephem-wheel-cache-adrv85wg/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee Successfully built omero-cli-render Installing collected packages: omero-cli-render Successfully installed omero-cli-render-0.8.2.dev0 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate Collecting omero-cli-duplicate Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-celvs4iu/omero-cli-duplicate_b13eee8540a04e0cb285f1509d3c6e70 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-celvs4iu/omero-cli-duplicate_b13eee8540a04e0cb285f1509d3c6e70 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1ff656cf74fdde2517399e245b593b21e75dc361 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.20.0) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.2.1) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.4.26) Building wheels for collected packages: omero-cli-duplicate Building wheel for omero-cli-duplicate (pyproject.toml): started Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=9518a5cb653164d840c633fe162afaacdf013b810056b78c952b498bc1700be1 Stored in directory: /tmp/pip-ephem-wheel-cache-67c2sngp/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 Successfully built omero-cli-duplicate Installing collected packages: omero-cli-duplicate Successfully installed omero-cli-duplicate-0.4.1.dev0 + pip install omero-certificates Collecting omero-certificates Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.20.0) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.2.1) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.4.26) Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) Installing collected packages: omero-certificates Successfully installed omero-certificates-0.4.0 + for x in *.tar.gz + pip install -U omero_dropbox-5.7.1.dev0.tar.gz Processing ./omero_dropbox-5.7.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.20.0) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.2.1) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.4.26) Building wheels for collected packages: omero-dropbox Building wheel for omero-dropbox (pyproject.toml): started Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=8e1409ff224eb41eda25599f4372a30cc9ddaca7dae865faadc7943c7a3b0009 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 Successfully built omero-dropbox Installing collected packages: omero-dropbox Successfully installed omero-dropbox-5.7.1.dev0 + for x in *.tar.gz + pip install -U omero_marshal-0.9.1.dev0.tar.gz Processing ./omero_marshal-0.9.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero_marshal Building wheel for omero_marshal (pyproject.toml): started Building wheel for omero_marshal (pyproject.toml): finished with status 'done' Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=251ddda5829945d6e0c4421c8d0c337e7bf430d93a4ef94f3281c0af3794a8a3 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18 Successfully built omero_marshal Installing collected packages: omero_marshal Successfully installed omero_marshal-0.9.1.dev0 + for x in *.tar.gz + pip install -U omero_py-5.20.1.dev0.tar.gz Processing ./omero_py-5.20.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (2.3.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (11.2.1) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (3.1.1) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (2025.4.26) Building wheels for collected packages: omero-py Building wheel for omero-py (pyproject.toml): started Building wheel for omero-py (pyproject.toml): finished with status 'done' Created wheel for omero-py: filename=omero_py-5.20.1.dev0-py3-none-any.whl size=2783496 sha256=cf592627c762ed3b16c02506814a686136f110b1f71a6a5e82c90da8eee07469 Stored in directory: /home/omero/.cache/pip/wheels/32/f0/8b/0c9b8cf4f8a22d20fdbdb6d870eee959c7bb16ef86f85fd19c Successfully built omero-py Installing collected packages: omero-py Attempting uninstall: omero-py Found existing installation: omero-py 5.20.0 Uninstalling omero-py-5.20.0: Successfully uninstalled omero-py-5.20.0 Successfully installed omero-py-5.20.1.dev0 + for x in *.tar.gz + pip install -U omero_scripts-5.9.1.dev0.tar.gz Processing ./omero_scripts-5.9.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero-scripts Building wheel for omero-scripts (pyproject.toml): started Building wheel for omero-scripts (pyproject.toml): finished with status 'done' Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136847 sha256=f929f0e5ff26fd516f58e45d8f7a63071ef50624ddc41f55bb20cc35f97fc2c5 Stored in directory: /home/omero/.cache/pip/wheels/5d/64/64/66c19773daf66dee2b16f9ebd49fde08680f277d4fff67beed Successfully built omero-scripts Installing collected packages: omero-scripts Successfully installed omero-scripts-5.9.1.dev0 + for x in *.tar.gz + pip install -U omero_web-5.29.1.dev0.tar.gz Processing ./omero_web-5.29.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.20.1.dev0) Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0) Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0) Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB) Collecting django-pipeline (from omero-web==5.29.1.dev0) Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB) Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0) Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) Collecting django-csp (from omero-web==5.29.1.dev0) Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB) Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0) Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB) Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0) Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0) Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.2.1) Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1) Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (25.0) Collecting importlib-resources (from omero-web==5.29.1.dev0) Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.4) Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (65.5.1) Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0) Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.4.26) Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) Using cached django-4.2.23-py3-none-any.whl (8.0 MB) Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB) Using cached django_csp-4.0-py3-none-any.whl (25 kB) Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB) Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) Using cached wheel-0.45.1-py3-none-any.whl (72 kB) Building wheels for collected packages: omero-web Building wheel for omero-web (pyproject.toml): started Building wheel for omero-web (pyproject.toml): finished with status 'done' Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817925 sha256=3cc7bb61ac7273fee86fda9d982fb6f0fdaecb40da2bec02950ed225da3bb5a0 Stored in directory: /home/omero/.cache/pip/wheels/b6/72/73/a29488e9ae7a2242fcfdc532a2c6f9884a34cc378eb261962a Successfully built omero-web Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web Successfully installed Django-4.2.23 asgiref-3.8.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. --2025-06-12 06:32:39-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.111.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 122144 (119K) [text/plain] Saving to: ‘Figure_To_Pdf.py’ 0K .......... .......... .......... .......... .......... 41% 3.90M 0s 50K .......... .......... .......... .......... .......... 83% 12.7M 0s 100K .......... ......... 100% 4.37M=0.02s 2025-06-12 06:32:39 (5.63 MB/s) - ‘Figure_To_Pdf.py’ saved [122144/122144] + chmod 755 Figure_To_Pdf.py + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts + omero config set omero.db.name OMERO-server + omero config set omero.db.host pg + omero config set omero.db.user postgres + omero config set omero.data.dir /home/omero/omero-server-data + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% + omero config set omero.db.poolsize 25 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts + omero config set omero.security.trustStorePassword changeit + omero config set omero.mail.config true + omero config set omero.mail.from qa@openmicroscopy.org.uk + omero config set omero.mail.host smtp.dundee.ac.uk + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' + omero certificates OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024) certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbcommand => upgrade 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbhost => localhost 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbname => OMERO-server 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbpass => omero 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbuser => omero 2025-06-12 06:33:03,767 [ omego.db] DEBUG rootpass => omero 2025-06-12 06:33:03,767 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 2025-06-12 06:33:03,767 [omego.extern] INFO Executing : omero version OMERO.py version: OMERO.server version: 5.6.3-567-1b63fb50f9-ice36-b440 5.20.1.dev0 2025-06-12 06:33:05,621 [omego.extern] INFO Completed [1.854 s] 2025-06-12 06:33:05,621 [omego.extern] DEBUG Using omero CLI from omero 2025-06-12 06:33:05,621 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 2025-06-12 06:33:05,621 [omego.extern] INFO Running [current environment]: omero config get --show-password 2025-06-12 06:33:05,621 [omego.extern] INFO Executing : omero config get --show-password 2025-06-12 06:33:07,302 [omego.extern] INFO Completed [1.680 s] 2025-06-12 06:33:07,302 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2025-06-12 06:33:07,302 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 2025-06-12 06:33:07,308 [omego.extern] INFO Completed [0.006 s] 2025-06-12 06:33:07,308 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.8\n' 2025-06-12 06:33:07,308 [ omego.db] INFO psql version: psql (PostgreSQL) 16.8 2025-06-12 06:33:07,308 [omego.extern] INFO Running [current environment]: omero config get --show-password 2025-06-12 06:33:07,308 [omego.extern] INFO Executing : omero config get --show-password 2025-06-12 06:33:09,075 [omego.extern] INFO Completed [1.767 s] 2025-06-12 06:33:09,075 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2025-06-12 06:33:09,076 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 2025-06-12 06:33:09,086 [omego.extern] INFO Completed [0.010 s] 2025-06-12 06:33:09,086 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n' 2025-06-12 06:33:09,086 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2025-06-12 06:33:09,086 [omego.extern] INFO Running [current environment]: omero config get --show-password 2025-06-12 06:33:09,086 [omego.extern] INFO Executing : omero config get --show-password 2025-06-12 06:33:10,786 [omego.extern] INFO Completed [1.700 s] 2025-06-12 06:33:10,786 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2025-06-12 06:33:10,787 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2025-06-12 06:33:10,798 [omego.extern] INFO Completed [0.011 s] 2025-06-12 06:33:10,798 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 2025-06-12 06:33:10,798 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 2025-06-12 06:33:10,800 [ omego.db] INFO Database is already at OMERO5.4__0 + export LANG=en_US.UTF-8 + LANG=en_US.UTF-8 + export LANGUAGE=en_US:en + LANGUAGE=en_US:en + export LC_ALL=en_US.UTF-8 + LC_ALL=en_US.UTF-8 + BUILD_ID=DONT_KILL_ME + omero admin start WARNING: lock files in /home/omero/omero-server-data ---------------------------------------- /home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock ---------------------------------------- You may want to stop all server processes and remove these files manually. Lock files can remain after an abrupt server outage and are especially frequent on remotely mounted filesystems like NFS. No descriptor given. Using etc/grid/default.xml Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry Waiting on startup. Use CTRL-C to exit + omero admin waitup Waiting on startup. Use CTRL-C to exit + omero admin diagnostics ================================================================================ OMERO Diagnostics (admin) ================================================================================ Commands: java -version 11.0.25 (/usr/bin/java) Commands: python -V 3.11.9 (/home/omero/workspace/OMERO-server/.venv3/bin/python) Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) Commands: psql --version 16.8 (/usr/bin/psql) Commands: openssl version 3.2.24 (/usr/bin/openssl) Component: OMERO.py 5.20.1.dev0 Component: OMERO.server 5.6.3-567-1b63fb50f9-ice36-b440 Server: icegridnode running Server: Blitz-0 active (pid = 4035, enabled) Server: Indexer-0 activating (enabled) Server: OMERO.Glacier2 active (pid = 4067, enabled) Server: OMERO.IceStorm active (pid = 4091, enabled) Server: Processor-0 active (pid = 4094, enabled) Server: Tables-0 active (pid = 4075, enabled) Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists Log files: Blitz-0.log 33.6 KB errors=0 warnings=1 Log files: DropBox.log n/a Log files: FileServer.log n/a Log files: Indexer-0.log 358 B Log files: MonitorServer.log n/a Log files: Processor-0.log 735 B Log files: Tables-0.log 961 B Log files: TestDropBox.log n/a Log files: master.err empty Log files: master.out 30.5 KB Log files: Total size 0.07 MB Environment:OMERO_HOME=(unset) Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server Environment:OMERO_NODE=(unset) Environment:OMERO_MASTER=(unset) Environment:OMERO_USERDIR=(unset) Environment:OMERO_TMPDIR=(unset) Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Environment:PYTHONPATH=(unset) Environment:ICE_HOME=/opt/ice-3.6.5 Environment:LD_LIBRARY_PATH=(unset) Environment:DYLD_LIBRARY_PATH=(unset) OMERO SSL port:4064 OMERO TCP port:4063 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) JVM settings: Blitz-${index} -Xmx7200m JVM settings: Indexer-${index} -Xmx4800m JVM settings: PixelData-${index} -Xmx7200m JVM settings: Repository-${index} -Xmx4800m Jar: lib/server/formats-api.jar Bio-Formats API 8.3.0-SNAPSHOT 12 June 2025 55487859c47c6e07764f09ec713aa9dc192b5a3a Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.3.0-SNAPSHOT 12 June 2025 55487859c47c6e07764f09ec713aa9dc192b5a3a Jar: lib/server/formats-gpl.jar Bio-Formats library 8.3.0-SNAPSHOT 12 June 2025 55487859c47c6e07764f09ec713aa9dc192b5a3a Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT Jar: lib/server/omero-zarr-pixel-buffer-0.4.1.jar OMERO Zarr Pixel Buffer 0.4.1 7c2d45bab0b51137dada7abda144282d6dcc76e1 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate Finished: SUCCESS