14:24:43 Started by user devspace 14:24:43 Running as SYSTEM 14:24:43 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 14:24:43 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8381547197650418628.sh 14:24:43 + source /home/settings.env 14:24:43 ++ OMERO_DB_HOST=pg 14:24:43 ++ OMERO_DB_USER=postgres 14:24:43 ++ OMERO_DB_PASS= 14:24:43 ++ OMERO_ROOT_PASS=omero 14:24:43 ++ OMERO_DATA_DIR=/OMERO 14:24:43 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 14:24:43 + OMERO_DB_NAME=OMERO-server 14:24:43 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 14:24:43 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 14:24:43 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 14:24:43 + OMERO_DATA_DIR=/home/omero/omero-server-data 14:24:43 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 14:24:43 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 14:24:43 ++ deactivate nondestructive 14:24:43 ++ '[' -n '' ']' 14:24:43 ++ '[' -n '' ']' 14:24:43 ++ hash -r 14:24:43 ++ '[' -n '' ']' 14:24:43 ++ unset VIRTUAL_ENV 14:24:43 ++ unset VIRTUAL_ENV_PROMPT 14:24:43 ++ '[' '!' nondestructive = nondestructive ']' 14:24:43 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 14:24:43 ++ export VIRTUAL_ENV 14:24:43 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:24:43 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:24:43 ++ export PATH 14:24:43 ++ '[' -n '' ']' 14:24:43 ++ '[' -z '' ']' 14:24:43 ++ _OLD_VIRTUAL_PS1= 14:24:43 ++ PS1='(.venv3) ' 14:24:43 ++ export PS1 14:24:43 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 14:24:43 ++ export VIRTUAL_ENV_PROMPT 14:24:43 ++ hash -r 14:24:43 + omero admin stop 14:24:43 /tmp/jenkins8381547197650418628.sh: line 10: omero: command not found 14:24:43 + echo not running 14:24:43 not running 14:24:43 + sleep 5 14:24:48 + deactivate 14:24:48 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 14:24:48 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:24:48 + export PATH 14:24:48 + unset _OLD_VIRTUAL_PATH 14:24:48 + '[' -n '' ']' 14:24:48 + hash -r 14:24:48 + '[' -n '' ']' 14:24:48 + unset VIRTUAL_ENV 14:24:48 + unset VIRTUAL_ENV_PROMPT 14:24:48 + '[' '!' '' = nondestructive ']' 14:24:48 + unset -f deactivate 14:24:48 + rm -rf /home/omero/workspace/OMERO-server/.venv3 14:24:53 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 14:25:12 + '[' false = true ']' 14:25:12 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 14:25:12 Skipping PURGE_DATA:CleanDbAndRepo 14:25:12 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 14:25:17 Copied 1 artifact from "OMERO-build" build number 2 14:25:17 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 1 14:25:17 Copied 2 artifacts from "OMERO-build-build" build number 9 14:25:17 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4747938028931349368.sh 14:25:17 + source /home/settings.env 14:25:17 ++ OMERO_DB_HOST=pg 14:25:17 ++ OMERO_DB_USER=postgres 14:25:17 ++ OMERO_DB_PASS= 14:25:17 ++ OMERO_ROOT_PASS=omero 14:25:17 ++ OMERO_DATA_DIR=/OMERO 14:25:17 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 14:25:17 + OMERO_DB_NAME=OMERO-server 14:25:17 + OMERO_DATA_DIR=/home/omero/omero-server-data 14:25:17 + mkdir -p /home/omero/omero-server-data 14:25:17 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 14:25:17 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 14:25:17 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 14:25:17 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 14:25:17 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 14:25:17 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 14:25:17 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 14:25:17 ++ ls OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip 14:25:17 + ZIP=OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip 14:25:17 + '[' '!' -z '' ']' 14:25:17 + DIST=OMERO.server-5.6.3-614-b7d1771417-ice36-b2 14:25:17 + unzip OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip 14:25:17 Archive: OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/blitz/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/grid/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/profiles/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/error/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/grid/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/janelia/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/matplotlib/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/ncsa_paledit/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/seaborn/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/wcif/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/analysis_scripts/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/annotation_scripts/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/export_scripts/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/figure_scripts/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/import_scripts/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/util_scripts/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/server/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/misc/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__1/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__10/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__11/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__2/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__3/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__4/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__5/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__6/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__7/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__8/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__9/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__4/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__5/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__6/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__7/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.1__0/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/t/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.3__0/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.4__0/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4__0/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__1/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__2/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__3/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/var/ 14:25:17 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/var/tmp/ 14:25:17 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/LICENSE.txt 14:25:17 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/backup.cfg 14:25:17 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/blitz/mail-senders.example 14:25:17 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/blitz/mail-server.example 14:25:17 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/build.properties 14:25:17 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/env.bat 14:25:17 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/env.sh 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/hibernate.properties 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/ice.config 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/logback-cli.xml 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/logback-indexing-cli.xml 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/logback-indexing.xml 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/logback.xml 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/mime.types 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/node1.cfg 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/node2.cfg 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/omero.properties 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/profiles/psql 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/rollover.cfg 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/Windows.cfg 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/error/maintainance.html 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/grid/README 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/grid/default.xml 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/grid/templates.xml 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/grid/windefault.xml 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/ice.config 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/internal.cfg 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/master.cfg 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/robot.template 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/testdropbox.config 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/history.rst 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/OMEZarrReader.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/accessors-smart.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/activation.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/aggdesigner-algorithm.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/aircompressor.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/antlr.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/aopalliance.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/apiguardian-api.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/asm.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/avatica-core.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/avatica-metrics.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/aws-java-sdk-core.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/aws-java-sdk-kms.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/aws-java-sdk-s3.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/base.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/batik-anim.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/batik-awt-util.jar 14:25:18 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/batik-bridge.jar 14:25:18 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inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__3/OMERO3A__2.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__3/OMERO3__5.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__4/OMERO3A__3.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__4/OMERO3__5.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__5/OMERO3A__4.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__6/OMERO3A__5.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__7/OMERO3A__6.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__8/OMERO3A__6.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__9/OMERO3A__8.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__4/OMERO3__1.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__5/OMERO3__4.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__6/OMERO3__5.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__7/OMERO3__6.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.1__0/OMERO4__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4__0/OMERO3A__11.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/psql-footer.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/psql-header.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/schema.sql 14:25:30 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/views.sql 14:25:31 + rm -f OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip 14:25:31 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-614-b7d1771417-ice36-b2 /home/omero/workspace/OMERO-server/OMERO.server 14:25:31 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 14:25:31 ++ deactivate nondestructive 14:25:31 ++ '[' -n '' ']' 14:25:31 ++ '[' -n '' ']' 14:25:31 ++ hash -r 14:25:31 ++ '[' -n '' ']' 14:25:31 ++ unset VIRTUAL_ENV 14:25:31 ++ unset VIRTUAL_ENV_PROMPT 14:25:31 ++ '[' '!' nondestructive = nondestructive ']' 14:25:31 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 14:25:31 ++ export VIRTUAL_ENV 14:25:31 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:25:31 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:25:31 ++ export PATH 14:25:31 ++ '[' -n '' ']' 14:25:31 ++ '[' -z '' ']' 14:25:31 ++ _OLD_VIRTUAL_PS1= 14:25:31 ++ PS1='(.venv3) ' 14:25:31 ++ export PS1 14:25:31 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 14:25:31 ++ export VIRTUAL_ENV_PROMPT 14:25:31 ++ hash -r 14:25:31 + pip install -U pip 14:25:32 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 14:25:32 Collecting pip 14:25:32 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB) 14:25:32 Installing collected packages: pip 14:25:32 Attempting uninstall: pip 14:25:32 Found existing installation: pip 22.3.1 14:25:33 Uninstalling pip-22.3.1: 14:25:34 Successfully uninstalled pip-22.3.1 14:25:47 Successfully installed pip-26.1.2 14:25:47 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 14:25:48 Collecting zeroc-ice==3.6.5 14:25:49 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 14:25:51 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.8 MB/s 0:00:01 14:25:51 Installing collected packages: zeroc-ice 14:25:54 Successfully installed zeroc-ice-3.6.5 14:25:54 + pip install markdown 14:25:55 Collecting markdown 14:25:55 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB) 14:25:55 Using cached markdown-3.10.2-py3-none-any.whl (108 kB) 14:25:55 Installing collected packages: markdown 14:25:56 Successfully installed markdown-3.10.2 14:25:56 + pip install reportlab 14:25:57 Collecting reportlab 14:25:57 Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB) 14:25:57 Collecting pillow>=9.0.0 (from reportlab) 14:25:57 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 14:25:57 Collecting charset-normalizer (from reportlab) 14:25:57 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB) 14:25:57 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB) 14:25:58 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 14:25:58 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB) 14:25:58 Installing collected packages: pillow, charset-normalizer, reportlab 14:26:06 14:26:06 Successfully installed charset-normalizer-3.4.7 pillow-12.3.0 reportlab-5.0.0 14:26:06 + pip install omego 14:26:07 Collecting omego 14:26:07 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 14:26:07 Collecting future (from omego) 14:26:07 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 14:26:07 Collecting yaclifw>=0.1.1 (from omego) 14:26:07 Using cached yaclifw-0.2.0-py3-none-any.whl 14:26:07 Collecting six (from yaclifw>=0.1.1->omego) 14:26:07 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 14:26:07 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 14:26:07 Using cached future-1.0.0-py3-none-any.whl (491 kB) 14:26:07 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 14:26:07 Installing collected packages: six, future, yaclifw, omego 14:26:12 14:26:12 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 14:26:12 + pip install tables 14:26:13 Collecting tables 14:26:13 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 14:26:13 Collecting numpy>=1.20.0 (from tables) 14:26:13 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 14:26:14 Collecting numexpr>=2.6.2 (from tables) 14:26:14 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 14:26:14 Collecting packaging (from tables) 14:26:14 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 14:26:14 Collecting py-cpuinfo (from tables) 14:26:14 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 14:26:14 Collecting blosc2>=2.3.0 (from tables) 14:26:14 Using cached blosc2-4.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.8 kB) 14:26:14 Collecting ndindex (from blosc2>=2.3.0->tables) 14:26:14 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 14:26:14 Collecting msgpack (from blosc2>=2.3.0->tables) 14:26:14 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 14:26:14 Collecting pydantic (from blosc2>=2.3.0->tables) 14:26:14 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB) 14:26:14 Collecting requests (from blosc2>=2.3.0->tables) 14:26:14 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 14:26:14 Collecting rich (from blosc2>=2.3.0->tables) 14:26:14 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 14:26:14 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 14:26:14 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) 14:26:14 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 14:26:14 Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB) 14:26:15 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables) 14:26:15 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 14:26:15 Collecting typing-extensions>=4.14.1 (from pydantic->blosc2>=2.3.0->tables) 14:26:15 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 14:26:15 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 14:26:15 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB) 14:26:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.7) 14:26:15 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 14:26:15 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB) 14:26:15 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables) 14:26:15 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) 14:26:15 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables) 14:26:15 Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB) 14:26:15 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 14:26:15 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 14:26:16 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 14:26:16 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB) 14:26:16 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 14:26:16 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 14:26:16 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 14:26:16 Using cached blosc2-4.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (6.8 MB) 14:26:16 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB) 14:26:16 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 14:26:16 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB) 14:26:16 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 14:26:16 Using cached packaging-26.2-py3-none-any.whl (100 kB) 14:26:16 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 14:26:16 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB) 14:26:16 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 14:26:16 Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB) 14:26:16 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 14:26:16 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB) 14:26:16 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 14:26:16 Using cached idna-3.18-py3-none-any.whl (65 kB) 14:26:16 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 14:26:16 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB) 14:26:16 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 14:26:16 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB) 14:26:16 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 14:26:16 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 14:26:16 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) 14:26:16 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, certifi, annotated-types, typing-inspection, requests, pydantic-core, numexpr, markdown-it-py, rich, pydantic, blosc2, tables 14:27:08 14:27:08 Successfully installed annotated-types-0.7.0 blosc2-4.7.0 certifi-2026.6.17 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 requests-2.34.2 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-extensions-4.16.0 typing-inspection-0.4.2 urllib3-2.7.0 14:27:08 + pip install jinja2 14:27:09 Collecting jinja2 14:27:09 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 14:27:09 Collecting MarkupSafe>=2.0 (from jinja2) 14:27:09 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 14:27:09 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 14:27:09 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 14:27:10 Installing collected packages: MarkupSafe, jinja2 14:27:11 14:27:11 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 14:27:11 + pip install omero-py 14:27:12 Collecting omero-py 14:27:12 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB) 14:27:12 Collecting appdirs (from omero-py) 14:27:12 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 14:27:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 14:27:12 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 14:27:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 14:27:12 Collecting PyYAML (from omero-py) 14:27:12 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 14:27:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 14:27:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.34.2) 14:27:12 Collecting portalocker (from omero-py) 14:27:12 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 14:27:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.7) 14:27:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18) 14:27:12 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.7.0) 14:27:12 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.6.17) 14:27:12 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 14:27:12 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 14:27:12 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 14:27:12 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 14:27:12 Installing collected packages: appdirs, PyYAML, portalocker, omero-py 14:27:29 14:27:29 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0 14:27:29 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 14:27:30 Collecting omero-metadata 14:27:30 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-wb1wk1yb/omero-metadata_f31d4c114bea4abeb0053382f778b6c1 14:27:30 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-wb1wk1yb/omero-metadata_f31d4c114bea4abeb0053382f778b6c1 14:27:31 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 9588d7e4152c26ee74bcd4ccb828a95185c32a7b 14:27:31 Installing build dependencies: started 14:27:32 Installing build dependencies: finished with status 'done' 14:27:32 Getting requirements to build wheel: started 14:27:32 Getting requirements to build wheel: finished with status 'done' 14:27:32 Preparing metadata (pyproject.toml): started 14:27:33 Preparing metadata (pyproject.toml): finished with status 'done' 14:27:33 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1) 14:27:33 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 14:27:33 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 14:27:33 Collecting pandas (from omero-metadata) 14:27:33 Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB) 14:27:33 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 14:27:33 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 14:27:33 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6) 14:27:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 14:27:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 14:27:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 14:27:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) 14:27:33 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 14:27:33 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 14:27:33 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 14:27:33 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 14:27:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.7) 14:27:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18) 14:27:33 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) 14:27:33 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.6.17) 14:27:33 Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB) 14:27:33 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 14:27:33 Building wheels for collected packages: omero-metadata 14:27:33 Building wheel for omero-metadata (pyproject.toml): started 14:27:33 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 14:27:33 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=06f7f1337fbf42932e7ca4526a403e73ed6dbb82a9239312ca6410db5dc18037 14:27:33 Stored in directory: /tmp/pip-ephem-wheel-cache-1cbsqftb/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 14:27:33 Successfully built omero-metadata 14:27:33 Installing collected packages: python-dateutil, pandas, omero-metadata 14:28:13 14:28:13 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.3 python-dateutil-2.9.0.post0 14:28:13 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 14:28:14 Collecting omero-cli-render 14:28:14 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-gzn4wttr/omero-cli-render_a9667cd318a84b2186bad2667ddc162b 14:28:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-gzn4wttr/omero-cli-render_a9667cd318a84b2186bad2667ddc162b 14:28:15 Running command git checkout -b merge_ci --track origin/merge_ci 14:28:15 Switched to a new branch 'merge_ci' 14:28:15 branch 'merge_ci' set up to track 'origin/merge_ci'. 14:28:15 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 23d2d55d97ce42d2a31619c0a0b97e80d9109070 14:28:15 Installing build dependencies: started 14:28:16 Installing build dependencies: finished with status 'done' 14:28:16 Getting requirements to build wheel: started 14:28:17 Getting requirements to build wheel: finished with status 'done' 14:28:17 Preparing metadata (pyproject.toml): started 14:28:17 Preparing metadata (pyproject.toml): finished with status 'done' 14:28:17 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 14:28:17 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1) 14:28:17 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 14:28:17 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 14:28:17 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 14:28:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 14:28:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 14:28:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 14:28:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) 14:28:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.7) 14:28:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18) 14:28:17 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) 14:28:17 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.6.17) 14:28:17 Building wheels for collected packages: omero-cli-render 14:28:17 Building wheel for omero-cli-render (pyproject.toml): started 14:28:17 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 14:28:17 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=20d55e73343c0da9425c712e4f6d31afeefbd453c5310f4ddfd7190cbee25139 14:28:17 Stored in directory: /tmp/pip-ephem-wheel-cache-dpkwiesm/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 14:28:17 Successfully built omero-cli-render 14:28:17 Installing collected packages: omero-cli-render 14:28:17 Successfully installed omero-cli-render-0.8.2.dev0 14:28:18 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 14:28:18 Collecting omero-cli-duplicate 14:28:18 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-wv8tjc4n/omero-cli-duplicate_dabb6cda22ff42f7955857c2c9bea5ea 14:28:18 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-wv8tjc4n/omero-cli-duplicate_dabb6cda22ff42f7955857c2c9bea5ea 14:28:19 Running command git checkout -b merge_ci --track origin/merge_ci 14:28:20 Switched to a new branch 'merge_ci' 14:28:20 branch 'merge_ci' set up to track 'origin/merge_ci'. 14:28:20 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 42072ce7ddf58526c26735240d703594c4271806 14:28:20 Installing build dependencies: started 14:28:21 Installing build dependencies: finished with status 'done' 14:28:21 Getting requirements to build wheel: started 14:28:21 Getting requirements to build wheel: finished with status 'done' 14:28:21 Preparing metadata (pyproject.toml): started 14:28:21 Preparing metadata (pyproject.toml): finished with status 'done' 14:28:21 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1) 14:28:21 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 14:28:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 14:28:21 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 14:28:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 14:28:21 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 14:28:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 14:28:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 14:28:21 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 14:28:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.7) 14:28:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18) 14:28:21 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 14:28:21 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.6.17) 14:28:21 Building wheels for collected packages: omero-cli-duplicate 14:28:21 Building wheel for omero-cli-duplicate (pyproject.toml): started 14:28:22 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 14:28:22 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=91a21f6e428876fc6074fa48aaf62fd6b0246d4ea5579f632fb35318bee4b551 14:28:22 Stored in directory: /tmp/pip-ephem-wheel-cache-4r6vqza5/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 14:28:22 Successfully built omero-cli-duplicate 14:28:22 Installing collected packages: omero-cli-duplicate 14:28:22 Successfully installed omero-cli-duplicate-0.4.1.dev0 14:28:22 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 14:28:23 Collecting omero-cli-zarr 14:28:23 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-967w4v_3/omero-cli-zarr_dea4be8f1203465799fc1d337e5c65a2 14:28:23 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-967w4v_3/omero-cli-zarr_dea4be8f1203465799fc1d337e5c65a2 14:28:24 Running command git checkout -b merge_ci --track origin/merge_ci 14:28:24 Switched to a new branch 'merge_ci' 14:28:24 branch 'merge_ci' set up to track 'origin/merge_ci'. 14:28:24 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 018fb77e1d941a36c7acb85898c6ba659530e36e 14:28:24 Installing build dependencies: started 14:28:25 Installing build dependencies: finished with status 'done' 14:28:25 Getting requirements to build wheel: started 14:28:26 Getting requirements to build wheel: finished with status 'done' 14:28:26 Installing backend dependencies: started 14:28:27 Installing backend dependencies: finished with status 'done' 14:28:27 Preparing metadata (pyproject.toml): started 14:28:27 Preparing metadata (pyproject.toml): finished with status 'done' 14:28:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1) 14:28:28 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 14:28:28 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 14:28:28 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 14:28:28 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 14:28:28 Using cached dask-2026.7.0-py3-none-any.whl.metadata (3.8 kB) 14:28:28 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 14:28:28 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 14:28:28 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:28 Using cached fsspec-2026.6.0-py3-none-any.whl.metadata (10 kB) 14:28:28 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 14:28:28 Using cached aiohttp-3.14.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 14:28:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 14:28:29 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 14:28:29 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 14:28:29 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 14:28:29 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 14:28:29 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 14:28:29 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB) 14:28:29 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 14:28:29 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.2) 14:28:29 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 14:28:29 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 14:28:29 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB) 14:28:29 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached s3fs-2026.6.0-py3-none-any.whl.metadata (1.2 kB) 14:28:29 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB) 14:28:29 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB) 14:28:29 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:29 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) 14:28:29 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.7.0) 14:28:30 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:30 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) 14:28:30 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0) 14:28:30 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partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:30 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) 14:28:30 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:30 Using cached aiobotocore-3.7.0-py3-none-any.whl.metadata (28 kB) 14:28:30 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:30 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) 14:28:31 Collecting botocore<1.43.1,>=1.42.90 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:31 Using cached botocore-1.43.0-py3-none-any.whl.metadata (5.5 kB) 14:28:31 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from 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aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:31 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB) 14:28:32 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:32 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 14:28:32 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:32 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB) 14:28:32 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:32 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 14:28:32 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 14:28:32 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) 14:28:32 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 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14:28:33 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 14:28:33 Using cached wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (159 kB) 14:28:33 Using cached yarl-1.24.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (106 kB) 14:28:33 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 14:28:33 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 14:28:33 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 14:28:33 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 14:28:33 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) 14:28:33 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 14:28:33 Using cached imageio-2.37.3-py3-none-any.whl (317 kB) 14:28:33 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 14:28:33 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 14:28:33 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 14:28:33 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 14:28:33 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 14:28:33 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 14:28:33 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 14:28:33 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 14:28:33 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 14:28:33 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 14:28:33 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 14:28:33 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 14:28:33 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 14:28:34 Building wheels for collected packages: omero-cli-zarr 14:28:34 Building wheel for omero-cli-zarr (pyproject.toml): started 14:28:34 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 14:28:34 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+g018fb77-py3-none-any.whl size=38290 sha256=bbd8d5dda562e3aa0769ccd4bee08a9358df58899ba51653247d446bbe21ab73 14:28:34 Stored in directory: /tmp/pip-ephem-wheel-cache-7wi399ay/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 14:28:34 Successfully built omero-cli-zarr 14:28:34 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 14:29:12 Attempting uninstall: pydantic-core 14:29:12 Found existing installation: pydantic_core 2.46.4 14:29:12 Uninstalling pydantic_core-2.46.4: 14:29:12 Successfully uninstalled pydantic_core-2.46.4 14:29:46 Attempting uninstall: pydantic 14:29:46 Found existing installation: pydantic 2.13.4 14:29:47 Uninstalling pydantic-2.13.4: 14:29:47 Successfully uninstalled pydantic-2.13.4 14:30:26 14:30:26 Successfully installed Deprecated-1.3.1 aiobotocore-3.7.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.1 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.0 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.6.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev162+g018fb77 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.6.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.2.2 yarl-1.24.2 zarr-3.1.6 zipp-4.1.0 14:30:26 + pip install omero-certificates 14:30:27 Collecting omero-certificates 14:30:27 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 14:30:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1) 14:30:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 14:30:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 14:30:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 14:30:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 14:30:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 14:30:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 14:30:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 14:30:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 14:30:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.7) 14:30:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18) 14:30:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 14:30:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.6.17) 14:30:27 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 14:30:27 Installing collected packages: omero-certificates 14:30:28 Successfully installed omero-certificates-0.4.0 14:30:28 + for x in *.tar.gz 14:30:28 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 14:30:29 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 14:30:29 Installing build dependencies: started 14:30:30 Installing build dependencies: finished with status 'done' 14:30:30 Getting requirements to build wheel: started 14:30:30 Getting requirements to build wheel: finished with status 'done' 14:30:30 Preparing metadata (pyproject.toml): started 14:30:31 Preparing metadata (pyproject.toml): finished with status 'done' 14:30:31 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1) 14:30:31 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 14:30:31 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 14:30:31 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 14:30:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 14:30:31 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 14:30:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 14:30:31 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 14:30:31 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 14:30:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.7) 14:30:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18) 14:30:31 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 14:30:31 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17) 14:30:31 Building wheels for collected packages: omero-dropbox 14:30:31 Building wheel for omero-dropbox (pyproject.toml): started 14:30:31 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 14:30:31 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=5a608176d359260f748f1356b53a42a5bfc3ce6f05f5a76d83446f16edb4fd84 14:30:31 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 14:30:31 Successfully built omero-dropbox 14:30:31 Installing collected packages: omero-dropbox 14:30:32 Successfully installed omero-dropbox-5.7.1.dev0 14:30:32 + for x in *.tar.gz 14:30:32 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 14:30:33 Processing ./omero_marshal-0.9.2.dev0.tar.gz 14:30:33 Installing build dependencies: started 14:30:34 Installing build dependencies: finished with status 'done' 14:30:34 Getting requirements to build wheel: started 14:30:34 Getting requirements to build wheel: finished with status 'done' 14:30:34 Preparing metadata (pyproject.toml): started 14:30:35 Preparing metadata (pyproject.toml): finished with status 'done' 14:30:35 Building wheels for collected packages: omero_marshal 14:30:35 Building wheel for omero_marshal (pyproject.toml): started 14:30:35 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 14:30:35 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=709eb65bc543f6c839ff634e4169b776ed101b4b68f893cd7da206353145e1c3 14:30:35 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 14:30:35 Successfully built omero_marshal 14:30:35 Installing collected packages: omero_marshal 14:30:37 Successfully installed omero_marshal-0.9.2.dev0 14:30:38 + for x in *.tar.gz 14:30:38 + pip install -U omero_py-5.22.2.dev0.tar.gz 14:30:38 Processing ./omero_py-5.22.2.dev0.tar.gz 14:30:39 Installing build dependencies: started 14:30:40 Installing build dependencies: finished with status 'done' 14:30:40 Getting requirements to build wheel: started 14:30:40 Getting requirements to build wheel: finished with status 'done' 14:30:40 Preparing metadata (pyproject.toml): started 14:30:41 Preparing metadata (pyproject.toml): finished with status 'done' 14:30:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4) 14:30:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0) 14:30:41 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6) 14:30:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0) 14:30:41 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3) 14:30:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5) 14:30:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2) 14:30:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0) 14:30:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.7) 14:30:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18) 14:30:41 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0) 14:30:41 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17) 14:30:41 Building wheels for collected packages: omero-py 14:30:41 Building wheel for omero-py (pyproject.toml): started 14:30:42 Building wheel for omero-py (pyproject.toml): finished with status 'done' 14:30:42 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=1c9ca354f9b6a1baa3450eefcfcd5d21ec904d2b6967d98a38b6222fd42fa439 14:30:42 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa 14:30:42 Successfully built omero-py 14:30:42 Installing collected packages: omero-py 14:30:42 Attempting uninstall: omero-py 14:30:42 Found existing installation: omero-py 5.22.1 14:30:43 Uninstalling omero-py-5.22.1: 14:30:54 Successfully uninstalled omero-py-5.22.1 14:31:11 Successfully installed omero-py-5.22.2.dev0 14:31:11 + for x in *.tar.gz 14:31:11 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 14:31:12 Processing ./omero_scripts-5.10.1.dev0.tar.gz 14:31:12 Installing build dependencies: started 14:31:13 Installing build dependencies: finished with status 'done' 14:31:13 Getting requirements to build wheel: started 14:31:13 Getting requirements to build wheel: finished with status 'done' 14:31:13 Preparing metadata (pyproject.toml): started 14:31:14 Preparing metadata (pyproject.toml): finished with status 'done' 14:31:14 Building wheels for collected packages: omero-scripts 14:31:14 Building wheel for omero-scripts (pyproject.toml): started 14:31:14 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 14:31:14 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=1a68da9cf9c894e917c4f83dfb719d894d2b9bfaec129a6c504e36f1a86fad52 14:31:14 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 14:31:14 Successfully built omero-scripts 14:31:14 Installing collected packages: omero-scripts 14:31:15 Successfully installed omero-scripts-5.10.1.dev0 14:31:15 + for x in *.tar.gz 14:31:15 + pip install -U omero_web-5.32.1.dev0.tar.gz 14:31:16 Processing ./omero_web-5.32.1.dev0.tar.gz 14:31:16 Installing build dependencies: started 14:31:18 Installing build dependencies: finished with status 'done' 14:31:18 Getting requirements to build wheel: started 14:31:18 Getting requirements to build wheel: finished with status 'done' 14:31:18 Preparing metadata (pyproject.toml): started 14:31:18 Preparing metadata (pyproject.toml): finished with status 'done' 14:31:18 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0) 14:31:18 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0) 14:31:19 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 14:31:19 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0) 14:31:19 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB) 14:31:19 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0) 14:31:19 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 14:31:19 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0) 14:31:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 14:31:19 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0) 14:31:19 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 14:31:19 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0) 14:31:19 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB) 14:31:19 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0) 14:31:19 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0) 14:31:19 Collecting pytz (from omero-web==5.32.1.dev0) 14:31:19 Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB) 14:31:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0) 14:31:19 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2) 14:31:19 Collecting importlib-resources (from omero-web==5.32.1.dev0) 14:31:19 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 14:31:19 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 14:31:19 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB) 14:31:19 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 14:31:19 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) 14:31:19 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1) 14:31:19 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) 14:31:19 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 14:31:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4) 14:31:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0) 14:31:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6) 14:31:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3) 14:31:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5) 14:31:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2) 14:31:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.7) 14:31:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18) 14:31:19 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0) 14:31:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17) 14:31:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 14:31:19 Using cached django-5.2.16-py3-none-any.whl (8.3 MB) 14:31:19 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB) 14:31:19 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 14:31:19 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 14:31:19 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB) 14:31:19 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) 14:31:19 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 14:31:19 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 14:31:19 Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB) 14:31:19 Using cached wheel-0.47.0-py3-none-any.whl (32 kB) 14:31:19 Building wheels for collected packages: omero-web 14:31:19 Building wheel for omero-web (pyproject.toml): started 14:31:21 Building wheel for omero-web (pyproject.toml): finished with status 'done' 14:31:21 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=b24158576d8d45668f7fa1fc0b6402b969cdfcbd1c3b0d803e68414ee9df472a 14:31:21 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f 14:31:21 Successfully built omero-web 14:31:21 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 14:32:29 14:32:29 Successfully installed Django-5.2.16 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0 14:32:30 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 14:32:30 --2026-07-07 14:32:30-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 14:32:30 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.111.133, ... 14:32:30 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 14:32:30 HTTP request sent, awaiting response... 200 OK 14:32:30 Length: 139337 (136K) [text/plain] 14:32:30 Saving to: ‘Figure_To_Pdf.py’ 14:32:30 14:32:30 0K .......... .......... .......... .......... .......... 36% 4.67M 0s 14:32:30 50K .......... .......... .......... .......... .......... 73% 7.23M 0s 14:32:30 100K .......... .......... .......... ...... 100% 8.73M=0.02s 14:32:30 14:32:30 2026-07-07 14:32:30 (6.26 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337] 14:32:30 14:32:30 + chmod 755 Figure_To_Pdf.py 14:32:30 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 14:32:30 + omero config set omero.db.name OMERO-server 14:32:37 + omero config set omero.db.host pg 14:32:42 + omero config set omero.db.user postgres 14:32:47 + omero config set omero.data.dir /home/omero/omero-server-data 14:32:52 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 14:32:57 + omero config set omero.db.poolsize 25 14:33:02 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 14:33:07 + omero config set omero.security.trustStorePassword changeit 14:33:12 + omero config set omero.mail.config true 14:33:17 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 14:33:22 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 14:33:27 + omero certificates 14:33:32 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 14:33:32 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 14:33:32 + '[' false = true ']' 14:33:32 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 14:33:32 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 14:33:32 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 14:33:32 2026-07-07 14:33:32,813 [ omego.db] DEBUG dbcommand => upgrade 14:33:32 2026-07-07 14:33:32,813 [ omego.db] DEBUG dbhost => localhost 14:33:32 2026-07-07 14:33:32,813 [ omego.db] DEBUG dbname => OMERO-server 14:33:32 2026-07-07 14:33:32,813 [ omego.db] DEBUG dbpass => omero 14:33:32 2026-07-07 14:33:32,813 [ omego.db] DEBUG dbuser => omero 14:33:32 2026-07-07 14:33:32,813 [ omego.db] DEBUG rootpass => omero 14:33:32 2026-07-07 14:33:32,813 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 14:33:32 2026-07-07 14:33:32,814 [omego.extern] INFO Executing : omero version 14:33:37 OMERO.py version: 14:33:37 OMERO.server version: 14:33:37 5.6.3-614-b7d1771417-ice36-b2 14:33:37 5.22.2.dev0 14:33:37 2026-07-07 14:33:37,914 [omego.extern] INFO Completed [5.100 s] 14:33:37 2026-07-07 14:33:37,915 [omego.extern] DEBUG Using omero CLI from omero 14:33:37 2026-07-07 14:33:37,915 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 14:33:37 2026-07-07 14:33:37,915 [omego.extern] INFO Running [current environment]: omero config get --show-password 14:33:37 2026-07-07 14:33:37,915 [omego.extern] INFO Executing : omero config get --show-password 14:33:42 2026-07-07 14:33:42,682 [omego.extern] INFO Completed [4.767 s] 14:33:42 2026-07-07 14:33:42,682 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 14:33:42 2026-07-07 14:33:42,682 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 14:33:42 2026-07-07 14:33:42,688 [omego.extern] INFO Completed [0.006 s] 14:33:42 2026-07-07 14:33:42,688 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 14:33:42 2026-07-07 14:33:42,688 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 14:33:42 14:33:42 2026-07-07 14:33:42,688 [omego.extern] INFO Running [current environment]: omero config get --show-password 14:33:42 2026-07-07 14:33:42,688 [omego.extern] INFO Executing : omero config get --show-password 14:33:47 2026-07-07 14:33:47,573 [omego.extern] INFO Completed [4.884 s] 14:33:47 2026-07-07 14:33:47,573 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 14:33:47 2026-07-07 14:33:47,573 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 14:33:47 2026-07-07 14:33:47,589 [omego.extern] INFO Completed [0.016 s] 14:33:47 2026-07-07 14:33:47,589 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n' 14:33:47 2026-07-07 14:33:47,589 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 14:33:47 2026-07-07 14:33:47,589 [omego.extern] INFO Running [current environment]: omero config get --show-password 14:33:47 2026-07-07 14:33:47,589 [omego.extern] INFO Executing : omero config get --show-password 14:33:53 2026-07-07 14:33:53,017 [omego.extern] INFO Completed [5.427 s] 14:33:53 2026-07-07 14:33:53,017 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 14:33:53 2026-07-07 14:33:53,017 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 14:33:53 2026-07-07 14:33:53,038 [omego.extern] INFO Completed [0.021 s] 14:33:53 2026-07-07 14:33:53,038 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 14:33:53 2026-07-07 14:33:53,038 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 14:33:53 2026-07-07 14:33:53,105 [ omego.db] INFO Database is already at OMERO5.4__0 14:33:53 + export LANG=en_US.UTF-8 14:33:53 + LANG=en_US.UTF-8 14:33:53 + export LANGUAGE=en_US:en 14:33:53 + LANGUAGE=en_US:en 14:33:53 + export LC_ALL=en_US.UTF-8 14:33:53 + LC_ALL=en_US.UTF-8 14:33:53 + BUILD_ID=DONT_KILL_ME 14:33:53 + omero admin start 14:34:04 No descriptor given. Using etc/grid/default.xml 14:34:19 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 14:34:19 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 14:34:19 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 14:34:19 Waiting on startup. Use CTRL-C to exit 14:34:19 + omero admin waitup 14:34:24 Waiting on startup. Use CTRL-C to exit 14:34:24 + omero admin diagnostics 14:34:34 14:34:34 ================================================================================ 14:34:34 OMERO Diagnostics (admin) 14:34:34 ================================================================================ 14:34:34 14:34:34 Commands: java -version 21.0.11 (/usr/bin/java) 14:34:34 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 14:34:34 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 14:34:34 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 14:34:34 Commands: psql --version 16.14 (/usr/bin/psql) 14:34:34 Commands: openssl version 3.5.527 (/usr/bin/openssl) 14:34:34 14:34:34 Component: OMERO.py 5.22.2.dev0 14:34:34 Component: OMERO.server 5.6.3-614-b7d1771417-ice36-b2 14:34:34 14:34:34 Server: icegridnode running 14:34:34 Server: Blitz-0 active (pid = 16415, enabled) 14:34:34 Server: Indexer-0 active (pid = 16437, enabled) 14:34:34 Server: OMERO.Glacier2 active (pid = 16443, enabled) 14:34:34 Server: OMERO.IceStorm active (pid = 16469, enabled) 14:34:34 Server: Processor-0 active (pid = 16459, enabled) 14:34:34 Server: Tables-0 active (pid = 16471, enabled) 14:34:34 14:34:34 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 14:34:34 Log files: Blitz-0.log 145.0 KB errors=0 warnings=1 14:34:34 Log files: DropBox.log n/a 14:34:34 Log files: FileServer.log n/a 14:34:34 Log files: Indexer-0.log 2.6 KB 14:34:34 Log files: MonitorServer.log n/a 14:34:34 Log files: Processor-0.log 856 B 14:34:34 Log files: Tables-0.log 1.1 KB 14:34:34 Log files: TestDropBox.log n/a 14:34:34 Log files: master.err empty 14:34:34 Log files: master.out 30.5 KB 14:34:34 Log files: Total size 0.18 MB 14:34:34 14:34:34 14:34:34 Environment:OMERO_HOME=(unset) 14:34:34 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 14:34:34 Environment:OMERO_NODE=(unset) 14:34:34 Environment:OMERO_MASTER=(unset) 14:34:34 Environment:OMERO_USERDIR=(unset) 14:34:34 Environment:OMERO_TMPDIR=(unset) 14:34:34 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:34:34 Environment:PYTHONPATH=(unset) 14:34:34 Environment:ICE_HOME=/opt/ice-3.6.5 14:34:34 Environment:LD_LIBRARY_PATH=(unset) 14:34:34 Environment:DYLD_LIBRARY_PATH=(unset) 14:34:34 14:34:34 OMERO SSL port:4064 14:34:34 OMERO TCP port:4063 14:34:34 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 14:34:34 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 14:34:34 14:34:34 JVM settings: Blitz-${index} -Xmx7200m 14:34:34 JVM settings: Indexer-${index} -Xmx4800m 14:34:34 JVM settings: PixelData-${index} -Xmx7200m 14:34:34 JVM settings: Repository-${index} -Xmx4800m 14:34:34 14:34:34 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 14:34:34 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 14:34:34 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 14:34:34 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 14:34:34 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 14:34:34 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 14:34:34 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 14:34:35 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 14:34:35 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 14:34:35 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 14:34:35 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 14:34:35 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 14:34:35 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 14:34:35 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 14:34:35 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 14:34:35 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 14:34:35 + deactivate 14:34:35 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 14:34:35 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:34:35 + export PATH 14:34:35 + unset _OLD_VIRTUAL_PATH 14:34:35 + '[' -n '' ']' 14:34:35 + hash -r 14:34:35 + '[' -n '' ']' 14:34:35 + unset VIRTUAL_ENV 14:34:35 + unset VIRTUAL_ENV_PROMPT 14:34:35 + '[' '!' '' = nondestructive ']' 14:34:35 + unset -f deactivate 14:34:35 Finished: SUCCESS