00:45:59 Started by upstream project "Trigger" build number 5 00:45:59 originally caused by: 00:45:59 Started by timer 00:45:59 Running as SYSTEM 00:45:59 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:45:59 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8690970939394965392.sh 00:45:59 + source /home/settings.env 00:45:59 ++ OMERO_DB_HOST=pg 00:45:59 ++ OMERO_DB_USER=postgres 00:45:59 ++ OMERO_DB_PASS= 00:45:59 ++ OMERO_ROOT_PASS=omero 00:45:59 ++ OMERO_DATA_DIR=/OMERO 00:45:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:45:59 + OMERO_DB_NAME=OMERO-server 00:45:59 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:45:59 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:45:59 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:45:59 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:45:59 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:45:59 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:45:59 ++ deactivate nondestructive 00:45:59 ++ '[' -n '' ']' 00:45:59 ++ '[' -n '' ']' 00:45:59 ++ '[' -n /bin/bash -o -n '' ']' 00:45:59 ++ hash -r 00:45:59 ++ '[' -n '' ']' 00:45:59 ++ unset VIRTUAL_ENV 00:45:59 ++ '[' '!' nondestructive = nondestructive ']' 00:45:59 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:45:59 ++ export VIRTUAL_ENV 00:45:59 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:59 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:59 ++ export PATH 00:45:59 ++ '[' -n '' ']' 00:45:59 ++ '[' -z '' ']' 00:45:59 ++ _OLD_VIRTUAL_PS1= 00:45:59 ++ PS1='(.venv3) ' 00:45:59 ++ export PS1 00:45:59 ++ '[' -n /bin/bash -o -n '' ']' 00:45:59 ++ hash -r 00:45:59 + omero admin stop 00:46:11 Server not running 00:46:11 + echo not running 00:46:11 not running 00:46:11 + sleep 5 00:46:16 + deactivate 00:46:16 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:46:16 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:16 + export PATH 00:46:16 + unset _OLD_VIRTUAL_PATH 00:46:16 + '[' -n '' ']' 00:46:16 + '[' -n /bin/bash -o -n '' ']' 00:46:16 + hash -r 00:46:16 + '[' -n '' ']' 00:46:16 + unset VIRTUAL_ENV 00:46:16 + '[' '!' '' = nondestructive ']' 00:46:16 + unset -f deactivate 00:46:16 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:46:17 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:46:20 + '[' false = true ']' 00:46:20 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:46:20 Skipping PURGE_DATA:CleanDbAndRepo 00:46:20 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-py-5.19.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:46:23 Copied 1 artifact from "OMERO-build" build number 4 00:46:25 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 4 00:46:25 Copied 2 artifacts from "OMERO-build-build" build number 4 00:46:25 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1392284260125837912.sh 00:46:25 + source /home/settings.env 00:46:25 ++ OMERO_DB_HOST=pg 00:46:25 ++ OMERO_DB_USER=postgres 00:46:25 ++ OMERO_DB_PASS= 00:46:25 ++ OMERO_ROOT_PASS=omero 00:46:25 ++ OMERO_DATA_DIR=/OMERO 00:46:25 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:46:25 + OMERO_DB_NAME=OMERO-server 00:46:25 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:46:25 + mkdir -p /home/omero/omero-server-data 00:46:25 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:46:25 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:46:25 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:46:25 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:46:25 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:46:25 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:46:25 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:46:25 ++ ls OMERO.server-5.6.3-435-c696c9b734-ice36.zip 00:46:25 + ZIP=OMERO.server-5.6.3-435-c696c9b734-ice36.zip 00:46:25 + '[' '!' -z '' ']' 00:46:25 + DIST=OMERO.server-5.6.3-435-c696c9b734-ice36 00:46:25 + unzip OMERO.server-5.6.3-435-c696c9b734-ice36.zip 00:46:25 Archive: OMERO.server-5.6.3-435-c696c9b734-ice36.zip 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/blitz/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/grid/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/profiles/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/error/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/luts/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/luts/janelia/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/luts/ncsa_paledit/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/luts/wcif/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/analysis_scripts/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/annotation_scripts/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/export_scripts/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/figure_scripts/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/import_scripts/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/util_scripts/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/misc/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__1/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__10/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__11/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__2/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__3/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__4/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__5/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__6/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__7/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__8/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__9/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__4/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__5/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__6/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__7/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.1__0/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/t/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.3__0/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.4__0/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4__0/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.0__0/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__1/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__2/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__3/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/ 00:46:25 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/var/ 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/LICENSE.txt 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/backup.cfg 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/blitz/mail-senders.example 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/blitz/mail-server.example 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/build.properties 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/env.bat 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/env.sh 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/hibernate.properties 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/ice.config 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/logback-cli.xml 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/logback-indexing-cli.xml 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/logback-indexing.xml 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/logback.xml 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/mime.types 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/node1.cfg 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/node2.cfg 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/omero.properties 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/profiles/psql 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/rollover.cfg 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/Windows.cfg 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/error/maintainance.html 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/README 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/default.xml 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/templates.xml 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/windefault.xml 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/ice.config 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/internal.cfg 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/master.cfg 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/robot.template 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/testdropbox.config 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/history.rst 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/OMEZarrReader.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/activation.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/aggdesigner-algorithm.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/aircompressor.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/annotations.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/antlr.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/aopalliance.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/avatica-core.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/avatica-metrics.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/base.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-all.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-anim.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-awt-util.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-bridge.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-codec.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-constants.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-css.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-dom.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-ext.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-extension.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-gui-util.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-gvt.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-i18n.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-parser.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-rasterizer-ext.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-rasterizer.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-script.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-slideshow.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-squiggle-ext.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-squiggle.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svg-dom.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svgbrowser.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svggen.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svgpp.jar 00:46:25 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svgrasterizer.jar 00:46:25 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OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/schema.sql 00:46:27 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/views.sql 00:46:27 + rm -f OMERO.server-5.6.3-435-c696c9b734-ice36.zip 00:46:27 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-435-c696c9b734-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:46:27 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:46:27 ++ deactivate nondestructive 00:46:27 ++ '[' -n '' ']' 00:46:27 ++ '[' -n '' ']' 00:46:27 ++ '[' -n /bin/bash -o -n '' ']' 00:46:27 ++ hash -r 00:46:27 ++ '[' -n '' ']' 00:46:27 ++ unset VIRTUAL_ENV 00:46:27 ++ '[' '!' nondestructive = nondestructive ']' 00:46:27 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:46:27 ++ export VIRTUAL_ENV 00:46:27 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:27 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:27 ++ export PATH 00:46:27 ++ '[' -n '' ']' 00:46:27 ++ '[' -z '' ']' 00:46:27 ++ _OLD_VIRTUAL_PS1= 00:46:27 ++ PS1='(.venv3) ' 00:46:27 ++ export PS1 00:46:27 ++ '[' -n /bin/bash -o -n '' ']' 00:46:27 ++ hash -r 00:46:27 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:46:28 Collecting zeroc-ice==3.6.5 00:46:29 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:46:30 Installing collected packages: zeroc-ice 00:46:31 Successfully installed zeroc-ice-3.6.5 00:46:31 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 00:46:31 You should consider upgrading via the '/home/omero/workspace/OMERO-server/.venv3/bin/python3 -m pip install --upgrade pip' command. 00:46:31 + pip install -U pip future 00:46:31 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:46:32 Collecting pip 00:46:32 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 00:46:32 Collecting future 00:46:32 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:46:32 Installing collected packages: pip, future 00:46:32 Attempting uninstall: pip 00:46:32 Found existing installation: pip 21.2.3 00:46:32 Uninstalling pip-21.2.3: 00:46:32 Successfully uninstalled pip-21.2.3 00:46:34 Successfully installed future-1.0.0 pip-24.0 00:46:34 + pip install markdown 00:46:34 Collecting markdown 00:46:34 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 00:46:35 Collecting importlib-metadata>=4.4 (from markdown) 00:46:35 Using cached importlib_metadata-7.0.2-py3-none-any.whl.metadata (4.6 kB) 00:46:35 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 00:46:35 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) 00:46:35 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 00:46:35 Using cached importlib_metadata-7.0.2-py3-none-any.whl (24 kB) 00:46:35 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) 00:46:35 Installing collected packages: zipp, importlib-metadata, markdown 00:46:35 Successfully installed importlib-metadata-7.0.2 markdown-3.6 zipp-3.18.1 00:46:35 + pip install reportlab 00:46:36 Collecting reportlab 00:46:36 Using cached reportlab-4.1.0-py3-none-any.whl.metadata (1.4 kB) 00:46:36 Collecting pillow>=9.0.0 (from reportlab) 00:46:36 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB) 00:46:36 Collecting chardet (from reportlab) 00:46:36 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:46:36 Using cached reportlab-4.1.0-py3-none-any.whl (1.9 MB) 00:46:36 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 00:46:36 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:46:36 Installing collected packages: pillow, chardet, reportlab 00:46:38 Successfully installed chardet-5.2.0 pillow-10.2.0 reportlab-4.1.0 00:46:38 + pip install omego 00:46:38 Collecting omego 00:46:38 Using cached omego-0.7.0-py3-none-any.whl 00:46:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:46:39 Collecting yaclifw>=0.1.1 (from omego) 00:46:39 Using cached yaclifw-0.2.0-py3-none-any.whl 00:46:39 Collecting six (from yaclifw>=0.1.1->omego) 00:46:39 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 00:46:39 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 00:46:39 Installing collected packages: six, yaclifw, omego 00:46:39 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 00:46:39 + pip install tables 00:46:40 Collecting tables 00:46:40 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:46:40 Collecting numpy>=1.19.0 (from tables) 00:46:40 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:46:40 Collecting numexpr>=2.6.2 (from tables) 00:46:40 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) 00:46:40 Collecting packaging (from tables) 00:46:40 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) 00:46:40 Collecting py-cpuinfo (from tables) 00:46:40 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:46:40 Collecting blosc2>=2.3.0 (from tables) 00:46:40 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:46:40 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:46:40 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 00:46:40 Collecting msgpack (from blosc2>=2.3.0->tables) 00:46:40 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 00:46:40 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:46:40 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:46:40 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB) 00:46:40 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:46:41 Using cached packaging-24.0-py3-none-any.whl (53 kB) 00:46:41 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:46:41 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 00:46:41 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 00:46:41 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:46:44 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2 00:46:44 + pip install jinja2 00:46:45 Collecting jinja2 00:46:45 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) 00:46:45 Collecting MarkupSafe>=2.0 (from jinja2) 00:46:45 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 00:46:45 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) 00:46:45 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 00:46:45 Installing collected packages: MarkupSafe, jinja2 00:46:45 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3 00:46:46 + pip install omero-py 00:46:46 Collecting omero-py 00:46:46 Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB) 00:46:46 Collecting urllib3<2 (from omero-py) 00:46:46 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) 00:46:46 Collecting appdirs (from omero-py) 00:46:46 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:46:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:46:46 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4) 00:46:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.2.0) 00:46:47 Collecting PyYAML (from omero-py) 00:46:47 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:46:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:46:47 Collecting requests (from omero-py) 00:46:47 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) 00:46:47 Collecting portalocker (from omero-py) 00:46:47 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB) 00:46:47 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:46:47 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 00:46:47 Collecting idna<4,>=2.5 (from requests->omero-py) 00:46:47 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) 00:46:47 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:46:47 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) 00:46:47 Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB) 00:46:47 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 00:46:47 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:46:47 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB) 00:46:47 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 00:46:47 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 00:46:47 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) 00:46:47 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 00:46:47 Using cached idna-3.6-py3-none-any.whl (61 kB) 00:46:47 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py 00:46:50 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18 00:46:50 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:46:50 Collecting omero-metadata 00:46:50 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-vtnp7q_i/omero-metadata_9db43c89de6f43859289a3f514510eb0 00:46:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-vtnp7q_i/omero-metadata_9db43c89de6f43859289a3f514510eb0 00:46:51 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 234188316a4d03c044609bc01b294fe1398b6afc 00:46:51 Installing build dependencies: started 00:46:53 Installing build dependencies: finished with status 'done' 00:46:53 Getting requirements to build wheel: started 00:46:53 Getting requirements to build wheel: finished with status 'done' 00:46:53 Installing backend dependencies: started 00:46:54 Installing backend dependencies: finished with status 'done' 00:46:54 Preparing metadata (pyproject.toml): started 00:46:55 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.0) 00:46:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 00:46:55 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3) 00:46:55 Collecting pandas (from omero-metadata) 00:46:55 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 00:46:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18) 00:46:55 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:46:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:46:55 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:46:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.2.0) 00:46:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:46:55 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0) 00:46:55 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2) 00:46:55 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 00:46:55 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:46:55 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:46:55 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:46:55 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 00:46:55 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:46:55 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 00:46:55 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 00:46:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 00:46:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.6) 00:46:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2) 00:46:56 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB) 00:46:56 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:46:56 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 00:46:56 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 00:46:56 Building wheels for collected packages: omero-metadata 00:46:56 Building wheel for omero-metadata (pyproject.toml): started 00:46:56 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:46:56 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=a6987d21a2b796d3a7a1c2a542347860b881d9416578ddd9ef20789fe16771ba 00:46:56 Stored in directory: /tmp/pip-ephem-wheel-cache-rdiax2pi/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:46:56 Successfully built omero-metadata 00:46:57 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:47:03 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.1 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 00:47:03 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:47:03 Collecting omero-cli-render 00:47:03 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-abkvk492/omero-cli-render_424109dbeda246b79622106419af2d17 00:47:03 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-abkvk492/omero-cli-render_424109dbeda246b79622106419af2d17 00:47:04 Running command git checkout -b merge_ci --track origin/merge_ci 00:47:05 Switched to a new branch 'merge_ci' 00:47:05 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:47:05 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit db1da41647f87c1a93f1f0433b1e95f0f1d0ced6 00:47:05 Installing build dependencies: started 00:47:07 Installing build dependencies: finished with status 'done' 00:47:07 Getting requirements to build wheel: started 00:47:07 Getting requirements to build wheel: finished with status 'done' 00:47:07 Installing backend dependencies: started 00:47:08 Installing backend dependencies: finished with status 'done' 00:47:08 Preparing metadata (pyproject.toml): started 00:47:08 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:08 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 00:47:08 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.0) 00:47:08 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0) 00:47:08 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18) 00:47:08 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:47:08 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:47:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.2.0) 00:47:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:47:08 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0) 00:47:08 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2) 00:47:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 00:47:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.6) 00:47:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2) 00:47:08 Building wheels for collected packages: omero-cli-render 00:47:08 Building wheel for omero-cli-render (pyproject.toml): started 00:47:09 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:47:09 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=32aa442ce4fb82ffd2c5f2fc2e4e7f815c97c31eaa26faa454ab6b69cb106c09 00:47:09 Stored in directory: /tmp/pip-ephem-wheel-cache-okytkio5/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:47:09 Successfully built omero-cli-render 00:47:09 Installing collected packages: omero-cli-render 00:47:09 Successfully installed omero-cli-render-0.8.1.dev0 00:47:09 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:47:10 Collecting omero-cli-duplicate 00:47:10 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-r36sr1hd/omero-cli-duplicate_9428f7e3cb7043e483badc974c66d6ac 00:47:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-r36sr1hd/omero-cli-duplicate_9428f7e3cb7043e483badc974c66d6ac 00:47:11 Running command git checkout -b merge_ci --track origin/merge_ci 00:47:11 Switched to a new branch 'merge_ci' 00:47:11 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:47:11 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 9ee971f72cba945e767d79b89610ae5328fa9a04 00:47:11 Installing build dependencies: started 00:47:13 Installing build dependencies: finished with status 'done' 00:47:13 Getting requirements to build wheel: started 00:47:13 Getting requirements to build wheel: finished with status 'done' 00:47:13 Installing backend dependencies: started 00:47:14 Installing backend dependencies: finished with status 'done' 00:47:14 Preparing metadata (pyproject.toml): started 00:47:14 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:14 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.0) 00:47:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18) 00:47:14 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:47:14 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:47:14 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:47:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.2.0) 00:47:14 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 00:47:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:47:14 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0) 00:47:14 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2) 00:47:15 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 00:47:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.6) 00:47:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2) 00:47:15 Building wheels for collected packages: omero-cli-duplicate 00:47:15 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:47:15 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:47:15 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=256adb651d6a376591822963b55e0cc30b48375fee6bfe133caf0d1663e69965 00:47:15 Stored in directory: /tmp/pip-ephem-wheel-cache-av4zdc96/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:47:15 Successfully built omero-cli-duplicate 00:47:15 Installing collected packages: omero-cli-duplicate 00:47:15 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:47:15 + pip install omero-certificates 00:47:16 Collecting omero-certificates 00:47:16 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 00:47:16 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.0) 00:47:16 Collecting distro==1.8.0 (from omero-certificates) 00:47:16 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 00:47:16 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18) 00:47:16 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:47:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:47:16 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:47:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.2.0) 00:47:16 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 00:47:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:47:16 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0) 00:47:16 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2) 00:47:16 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 00:47:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.6) 00:47:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2) 00:47:16 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 00:47:16 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 00:47:16 Installing collected packages: distro, omero-certificates 00:47:16 Successfully installed distro-1.8.0 omero-certificates-0.3.2 00:47:16 + for x in *.tar.gz 00:47:16 + pip install -U omero-dropbox-5.6.3.dev0.tar.gz 00:47:17 Processing ./omero-dropbox-5.6.3.dev0.tar.gz 00:47:17 Installing build dependencies: started 00:47:19 Installing build dependencies: finished with status 'done' 00:47:19 Getting requirements to build wheel: started 00:47:19 Getting requirements to build wheel: finished with status 'done' 00:47:19 Installing backend dependencies: started 00:47:20 Installing backend dependencies: finished with status 'done' 00:47:20 Preparing metadata (pyproject.toml): started 00:47:21 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:21 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.0) 00:47:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18) 00:47:21 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4) 00:47:21 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0) 00:47:21 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4) 00:47:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.2.0) 00:47:21 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1) 00:47:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5) 00:47:21 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0) 00:47:21 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2) 00:47:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2) 00:47:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.6) 00:47:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2) 00:47:21 Building wheels for collected packages: omero-dropbox 00:47:21 Building wheel for omero-dropbox (pyproject.toml): started 00:47:21 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:47:21 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=9f94ef511acb9ff19bd3075e976d09b1bd06620d9b0fb06694def71598cb78bb 00:47:21 Stored in directory: /home/omero/.cache/pip/wheels/a5/63/29/4452e52704e5ad491f397a0013b20ebb9d413ceb110f8101d1 00:47:21 Successfully built omero-dropbox 00:47:21 Installing collected packages: omero-dropbox 00:47:21 Successfully installed omero-dropbox-5.6.3.dev0 00:47:22 + for x in *.tar.gz 00:47:22 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:47:22 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:47:22 Installing build dependencies: started 00:47:24 Installing build dependencies: finished with status 'done' 00:47:24 Getting requirements to build wheel: started 00:47:24 Getting requirements to build wheel: finished with status 'done' 00:47:24 Installing backend dependencies: started 00:47:25 Installing backend dependencies: finished with status 'done' 00:47:25 Preparing metadata (pyproject.toml): started 00:47:26 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:26 Building wheels for collected packages: omero_marshal 00:47:26 Building wheel for omero_marshal (pyproject.toml): started 00:47:26 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:47:26 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=8573950e0e406af26645d1a53a90cc68c7c5e4643815209aa3f8febd03c6c04d 00:47:26 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:47:26 Successfully built omero_marshal 00:47:26 Installing collected packages: omero_marshal 00:47:26 Successfully installed omero_marshal-0.9.1.dev0 00:47:26 + for x in *.tar.gz 00:47:26 + pip install -U omero-py-5.19.1.dev0.tar.gz 00:47:27 Processing ./omero-py-5.19.1.dev0.tar.gz 00:47:27 Installing build dependencies: started 00:47:29 Installing build dependencies: finished with status 'done' 00:47:29 Getting requirements to build wheel: started 00:47:30 Getting requirements to build wheel: finished with status 'done' 00:47:30 Installing backend dependencies: started 00:47:31 Installing backend dependencies: finished with status 'done' 00:47:31 Preparing metadata (pyproject.toml): started 00:47:31 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18) 00:47:31 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4) 00:47:31 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0) 00:47:31 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4) 00:47:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0) 00:47:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1) 00:47:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5) 00:47:31 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0) 00:47:31 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2) 00:47:31 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2) 00:47:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6) 00:47:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2) 00:47:31 Building wheels for collected packages: omero-py 00:47:31 Building wheel for omero-py (pyproject.toml): started 00:47:33 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:47:33 Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781647 sha256=21f46740baddb120e189ac9e969452c5fc5de718e7f15231328fb7a116ba4ab8 00:47:33 Stored in directory: /home/omero/.cache/pip/wheels/52/ce/ea/f5d1427ab67c2783e3f124f0ebf8311109c5ac331893a591ad 00:47:33 Successfully built omero-py 00:47:33 Installing collected packages: omero-py 00:47:33 Attempting uninstall: omero-py 00:47:33 Found existing installation: omero-py 5.19.0 00:47:33 Uninstalling omero-py-5.19.0: 00:47:33 Successfully uninstalled omero-py-5.19.0 00:47:36 Successfully installed omero-py-5.19.1.dev0 00:47:36 + for x in *.tar.gz 00:47:36 + pip install -U omero-scripts-5.8.1.dev0.tar.gz 00:47:37 Processing ./omero-scripts-5.8.1.dev0.tar.gz 00:47:37 Installing build dependencies: started 00:47:39 Installing build dependencies: finished with status 'done' 00:47:39 Getting requirements to build wheel: started 00:47:39 Getting requirements to build wheel: finished with status 'done' 00:47:39 Installing backend dependencies: started 00:47:40 Installing backend dependencies: finished with status 'done' 00:47:40 Preparing metadata (pyproject.toml): started 00:47:40 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:40 Building wheels for collected packages: omero-scripts 00:47:40 Building wheel for omero-scripts (pyproject.toml): started 00:47:41 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:47:41 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=0356c0f362e95f0a911f4aeb3e798460785ab4c0b80275a5e991a7c6100a80c6 00:47:41 Stored in directory: /home/omero/.cache/pip/wheels/ef/a0/80/e3393129cedc64a3ad2b8c2fa437d83a3d318cba65d425f5cf 00:47:41 Successfully built omero-scripts 00:47:41 Installing collected packages: omero-scripts 00:47:41 Successfully installed omero-scripts-5.8.1.dev0 00:47:41 + for x in *.tar.gz 00:47:41 + pip install -U omero-web-5.25.1.dev0.tar.gz 00:47:42 Processing ./omero-web-5.25.1.dev0.tar.gz 00:47:42 Installing build dependencies: started 00:47:44 Installing build dependencies: finished with status 'done' 00:47:44 Getting requirements to build wheel: started 00:47:44 Getting requirements to build wheel: finished with status 'done' 00:47:44 Installing backend dependencies: started 00:47:45 Installing backend dependencies: finished with status 'done' 00:47:45 Preparing metadata (pyproject.toml): started 00:47:46 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:46 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0) 00:47:46 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0) 00:47:46 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:47:46 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0) 00:47:46 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB) 00:47:46 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0) 00:47:46 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 00:47:46 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0) 00:47:46 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:47:46 Collecting django-csp (from omero-web==5.25.1.dev0) 00:47:46 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:47:47 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0) 00:47:47 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB) 00:47:47 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0) 00:47:47 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) 00:47:47 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0) 00:47:47 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0) 00:47:47 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1) 00:47:47 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2) 00:47:47 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0) 00:47:47 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 00:47:47 Using cached asgiref-3.7.2-py3-none-any.whl.metadata (9.2 kB) 00:47:47 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 00:47:47 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB) 00:47:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18) 00:47:47 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4) 00:47:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0) 00:47:47 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4) 00:47:47 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1) 00:47:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5) 00:47:47 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0) 00:47:47 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 00:47:47 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB) 00:47:47 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2) 00:47:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6) 00:47:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2) 00:47:47 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:47:47 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 00:47:47 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:47:47 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB) 00:47:47 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB) 00:47:47 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB) 00:47:47 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:47:47 Using cached asgiref-3.7.2-py3-none-any.whl (24 kB) 00:47:47 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) 00:47:47 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB) 00:47:47 Building wheels for collected packages: omero-web 00:47:47 Building wheel for omero-web (pyproject.toml): started 00:47:49 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:47:49 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2769827 sha256=f533da218b2d74fe44385a440c545f4c09522c08e9e767da2ca7d56508abeef6 00:47:49 Stored in directory: /home/omero/.cache/pip/wheels/c5/4f/aa/011f4ecfdcda915571d213b068a736fbddf1b36b2e590de11a 00:47:49 Successfully built omero-web 00:47:49 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 00:47:52 Successfully installed Django-4.2.11 asgiref-3.7.2 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0 00:47:52 + omero config set omero.db.name OMERO-server 00:47:56 + omero config set omero.db.host pg 00:47:57 + omero config set omero.db.user postgres 00:47:59 + omero config set omero.data.dir /home/omero/omero-server-data 00:48:00 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:48:02 + omero config set omero.db.poolsize 25 00:48:04 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:48:05 + omero config set omero.security.trustStorePassword changeit 00:48:07 + omero config set omero.mail.config true 00:48:09 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:48:10 + omero config set omero.mail.host smtp.dundee.ac.uk 00:48:12 + omero certificates 00:48:13 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:48:13 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:48:14 + '[' false = true ']' 00:48:14 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:48:14 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:48:14 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:48:14 2024-03-17 00:48:14,359 [ omego.db] DEBUG dbcommand => upgrade 00:48:14 2024-03-17 00:48:14,360 [ omego.db] DEBUG dbhost => localhost 00:48:14 2024-03-17 00:48:14,360 [ omego.db] DEBUG dbname => OMERO-server 00:48:14 2024-03-17 00:48:14,360 [ omego.db] DEBUG dbpass => omero 00:48:14 2024-03-17 00:48:14,360 [ omego.db] DEBUG dbuser => omero 00:48:14 2024-03-17 00:48:14,360 [ omego.db] DEBUG rootpass => omero 00:48:14 2024-03-17 00:48:14,360 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:48:14 2024-03-17 00:48:14,360 [omego.extern] INFO Executing : omero version 00:48:15 OMERO.py version: 00:48:15 OMERO.server version: 00:48:15 5.6.3-435-c696c9b734-ice36 00:48:15 5.19.1.dev0 00:48:16 2024-03-17 00:48:16,088 [omego.extern] INFO Completed [1.728 s] 00:48:16 2024-03-17 00:48:16,088 [omego.extern] DEBUG Using omero CLI from omero 00:48:16 2024-03-17 00:48:16,088 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:48:16 2024-03-17 00:48:16,088 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:16 2024-03-17 00:48:16,089 [omego.extern] INFO Executing : omero config get --show-password 00:48:17 2024-03-17 00:48:17,779 [omego.extern] INFO Completed [1.690 s] 00:48:17 2024-03-17 00:48:17,779 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:17 2024-03-17 00:48:17,780 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:48:17 2024-03-17 00:48:17,866 [omego.extern] INFO Completed [0.086 s] 00:48:17 2024-03-17 00:48:17,866 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 00:48:17 2024-03-17 00:48:17,866 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 00:48:17 00:48:17 2024-03-17 00:48:17,866 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:17 2024-03-17 00:48:17,866 [omego.extern] INFO Executing : omero config get --show-password 00:48:19 2024-03-17 00:48:19,512 [omego.extern] INFO Completed [1.645 s] 00:48:19 2024-03-17 00:48:19,512 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:19 2024-03-17 00:48:19,513 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:48:19 2024-03-17 00:48:19,621 [omego.extern] INFO Completed [0.108 s] 00:48:19 2024-03-17 00:48:19,621 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.29.0.8") at port "5432".\n' 00:48:19 2024-03-17 00:48:19,621 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:48:19 2024-03-17 00:48:19,621 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:19 2024-03-17 00:48:19,621 [omego.extern] INFO Executing : omero config get --show-password 00:48:21 2024-03-17 00:48:21,354 [omego.extern] INFO Completed [1.733 s] 00:48:21 2024-03-17 00:48:21,354 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:21 2024-03-17 00:48:21,355 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:48:22 2024-03-17 00:48:22,149 [omego.extern] INFO Completed [0.794 s] 00:48:22 2024-03-17 00:48:22,149 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:48:22 2024-03-17 00:48:22,149 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:48:22 2024-03-17 00:48:22,153 [ omego.db] INFO Database is already at OMERO5.4__0 00:48:22 + export LANG=en_US.UTF-8 00:48:22 + LANG=en_US.UTF-8 00:48:22 + export LANGUAGE=en_US:en 00:48:22 + LANGUAGE=en_US:en 00:48:22 + export LC_ALL=en_US.UTF-8 00:48:22 + LC_ALL=en_US.UTF-8 00:48:22 + BUILD_ID=DONT_KILL_ME 00:48:22 + omero admin start 00:48:36 WARNING: lock files in /home/omero/omero-server-data 00:48:36 ---------------------------------------- 00:48:36 /home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock 00:48:36 ---------------------------------------- 00:48:36 00:48:36 You may want to stop all server processes and remove 00:48:36 these files manually. Lock files can remain after an 00:48:36 abrupt server outage and are especially frequent on 00:48:36 remotely mounted filesystems like NFS. 00:48:36 00:48:36 No descriptor given. Using etc/grid/default.xml 00:48:53 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:48:53 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:48:53 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:48:53 Waiting on startup. Use CTRL-C to exit 00:48:54 + omero admin waitup 00:48:56 Waiting on startup. Use CTRL-C to exit 00:48:56 + omero admin diagnostics 00:48:58 00:48:58 ================================================================================ 00:48:58 OMERO Diagnostics (admin) 00:48:58 ================================================================================ 00:48:58 00:48:58 Commands: java -version 11.0.22 (/usr/bin/java) 00:48:58 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:48:58 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:48:58 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:48:58 Commands: psql --version 16.2 (/usr/bin/psql) 00:48:58 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:48:58 00:48:58 Component: OMERO.py 5.19.1.dev0 00:48:58 Component: OMERO.server 5.6.3-435-c696c9b734-ice36 00:48:58 00:48:58 Server: icegridnode running 00:48:58 Server: Blitz-0 active (pid = 2631, enabled) 00:48:58 Server: DropBox active (pid = 2656, enabled) 00:48:58 Server: FileServer active (pid = 2663, enabled) 00:48:58 Server: Indexer-0 active (pid = 2708, enabled) 00:48:58 Server: MonitorServer active (pid = 2664, enabled) 00:48:58 Server: OMERO.Glacier2 active (pid = 2665, enabled) 00:48:58 Server: OMERO.IceStorm active (pid = 2668, enabled) 00:48:58 Server: PixelData-0 active (pid = 2676, enabled) 00:48:58 Server: Processor-0 activating (enabled) 00:48:58 Server: Tables-0 activating (enabled) 00:48:58 Server: TestDropBox inactive (enabled) 00:48:58 00:48:58 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:48:58 Log files: Blitz-0.log 25.3 KB errors=0 warnings=1 00:48:58 Log files: DropBox.log 1.2 KB 00:48:58 Log files: FileServer.log 114 B 00:48:58 Log files: Indexer-0.log 2.6 KB 00:48:58 Log files: MonitorServer.log 1.1 KB 00:48:58 Log files: PixelData-0.log 3.4 KB 00:48:58 Log files: Processor-0.log 592 B 00:48:58 Log files: Tables-0.log 841 B 00:48:58 Log files: TestDropBox.log n/a 00:48:58 Log files: master.err 2.1 KB 00:48:58 Log files: master.out 41.5 KB 00:48:58 Log files: Total size 0.08 MB 00:48:58 00:48:58 00:48:58 Environment:OMERO_HOME=(unset) 00:48:58 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:58 Environment:OMERO_NODE=(unset) 00:48:58 Environment:OMERO_MASTER=(unset) 00:48:58 Environment:OMERO_USERDIR=(unset) 00:48:58 Environment:OMERO_TMPDIR=(unset) 00:48:58 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:58 Environment:PYTHONPATH=(unset) 00:48:58 Environment:ICE_HOME=/opt/ice-3.6.5 00:48:58 Environment:LD_LIBRARY_PATH=(unset) 00:48:58 Environment:DYLD_LIBRARY_PATH=(unset) 00:48:58 00:48:58 OMERO SSL port:4064 00:48:58 OMERO TCP port:4063 00:48:58 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:48:58 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:48:58 00:48:58 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:48:58 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:48:58 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:48:58 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:48:58 00:48:58 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 17 March 2024 7cac3a884e273a6ba8487f633eee5f5131154ae1 00:48:58 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 17 March 2024 7cac3a884e273a6ba8487f633eee5f5131154ae1 00:48:58 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 17 March 2024 7cac3a884e273a6ba8487f633eee5f5131154ae1 00:48:58 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.2-SNAPSHOT 17 March 2024 a0f5570b9a8feb5b10c3e4c95448d987d6b1bd37 00:48:58 Jar: lib/server/ome-common.jar OME Common Java 6.0.22-SNAPSHOT 17 March 2024 a0f5570b9a8feb5b10c3e4c95448d987d6b1bd37 00:48:58 Jar: lib/server/ome-jai.jar OME JAI 0.1.3-SNAPSHOT 17 March 2024 a0f5570b9a8feb5b10c3e4c95448d987d6b1bd37 00:48:58 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.3-SNAPSHOT 17 March 2024 a0f5570b9a8feb5b10c3e4c95448d987d6b1bd37 00:48:58 Jar: lib/server/ome-poi.jar OME POI 5.3.9-SNAPSHOT 17 March 2024 a0f5570b9a8feb5b10c3e4c95448d987d6b1bd37 00:48:58 Jar: lib/server/ome-xml.jar OME XML library 6.3.5-SNAPSHOT 17 March 2024 a0f5570b9a8feb5b10c3e4c95448d987d6b1bd37 00:48:58 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT 00:48:58 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT 00:48:58 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT 00:48:58 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT 00:48:58 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT 00:48:58 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT 00:48:58 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT 00:48:59 + deactivate 00:48:59 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:48:59 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:59 + export PATH 00:48:59 + unset _OLD_VIRTUAL_PATH 00:48:59 + '[' -n '' ']' 00:48:59 + '[' -n /bin/bash -o -n '' ']' 00:48:59 + hash -r 00:48:59 + '[' -n '' ']' 00:48:59 + unset VIRTUAL_ENV 00:48:59 + '[' '!' '' = nondestructive ']' 00:48:59 + unset -f deactivate 00:48:59 Finished: SUCCESS