00:48:41 Started by upstream project "Trigger" build number 52 00:48:41 originally caused by: 00:48:41 Started by timer 00:48:41 Running as SYSTEM 00:48:41 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:48:41 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8002184017664552827.sh 00:48:41 + source /home/settings.env 00:48:41 ++ OMERO_DB_HOST=pg 00:48:41 ++ OMERO_DB_USER=postgres 00:48:41 ++ OMERO_DB_PASS= 00:48:41 ++ OMERO_ROOT_PASS=omero 00:48:41 ++ OMERO_DATA_DIR=/OMERO 00:48:41 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:48:41 + OMERO_DB_NAME=OMERO-server 00:48:41 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:48:41 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:41 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:41 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:48:41 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:48:41 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:48:41 ++ deactivate nondestructive 00:48:41 ++ '[' -n '' ']' 00:48:41 ++ '[' -n '' ']' 00:48:41 ++ '[' -n /bin/bash -o -n '' ']' 00:48:41 ++ hash -r 00:48:41 ++ '[' -n '' ']' 00:48:41 ++ unset VIRTUAL_ENV 00:48:41 ++ '[' '!' nondestructive = nondestructive ']' 00:48:41 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:48:41 ++ export VIRTUAL_ENV 00:48:41 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:41 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:41 ++ export PATH 00:48:41 ++ '[' -n '' ']' 00:48:41 ++ '[' -z '' ']' 00:48:41 ++ _OLD_VIRTUAL_PS1= 00:48:41 ++ PS1='(.venv3) ' 00:48:41 ++ export PS1 00:48:41 ++ '[' -n /bin/bash -o -n '' ']' 00:48:41 ++ hash -r 00:48:41 + omero admin stop 00:48:52 Waiting on shutdown. Use CTRL-C to exit 00:48:52 .+ sleep 5 00:49:07 + deactivate 00:49:07 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:49:07 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:49:07 + export PATH 00:49:07 + unset _OLD_VIRTUAL_PATH 00:49:07 + '[' -n '' ']' 00:49:07 + '[' -n /bin/bash -o -n '' ']' 00:49:07 + hash -r 00:49:07 + '[' -n '' ']' 00:49:07 + unset VIRTUAL_ENV 00:49:07 + '[' '!' '' = nondestructive ']' 00:49:07 + unset -f deactivate 00:49:07 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:49:20 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:49:24 + '[' false = true ']' 00:49:24 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:49:24 Skipping PURGE_DATA:CleanDbAndRepo 00:49:24 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:49:28 Copied 1 artifact from "OMERO-build" build number 43 00:49:29 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 43 00:49:29 Copied 2 artifacts from "OMERO-build-build" build number 44 00:49:29 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5262534213660842247.sh 00:49:29 + source /home/settings.env 00:49:29 ++ OMERO_DB_HOST=pg 00:49:29 ++ OMERO_DB_USER=postgres 00:49:29 ++ OMERO_DB_PASS= 00:49:29 ++ OMERO_ROOT_PASS=omero 00:49:29 ++ OMERO_DATA_DIR=/OMERO 00:49:29 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:49:29 + OMERO_DB_NAME=OMERO-server 00:49:29 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:49:29 + mkdir -p /home/omero/omero-server-data 00:49:29 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:49:29 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:49:29 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:49:29 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:49:29 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:49:29 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:49:29 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:49:29 ++ ls OMERO.server-5.6.3-458-d399a6277c-ice36.zip 00:49:29 + ZIP=OMERO.server-5.6.3-458-d399a6277c-ice36.zip 00:49:29 + '[' '!' -z '' ']' 00:49:29 + DIST=OMERO.server-5.6.3-458-d399a6277c-ice36 00:49:29 + unzip OMERO.server-5.6.3-458-d399a6277c-ice36.zip 00:49:29 Archive: OMERO.server-5.6.3-458-d399a6277c-ice36.zip 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/blitz/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/grid/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/profiles/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/error/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/grid/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/luts/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/luts/janelia/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/luts/ncsa_paledit/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/luts/wcif/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/omero/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/omero/analysis_scripts/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/omero/annotation_scripts/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/omero/export_scripts/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/omero/figure_scripts/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/omero/import_scripts/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/scripts/omero/util_scripts/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/server/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/share/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/share/licenses/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/misc/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__1/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__10/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__11/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__2/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__3/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__4/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__5/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__6/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__7/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__8/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3A__9/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3__4/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3__5/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3__6/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO3__7/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO4.1__0/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO4.2__0/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO4.2__0/t/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO4.3__0/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO4.4__0/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO4__0/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.0__0/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.1__1/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.2__0/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.3__0/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4DEV__1/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4DEV__2/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4DEV__3/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/ 00:49:29 creating: OMERO.server-5.6.3-458-d399a6277c-ice36/var/ 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/LICENSE.txt 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/backup.cfg 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/blitz/mail-senders.example 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/blitz/mail-server.example 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/build.properties 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/env.bat 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/env.sh 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/hibernate.properties 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/ice.config 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/logback-cli.xml 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/logback-indexing-cli.xml 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/logback-indexing.xml 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/logback.xml 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/mime.types 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/node1.cfg 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/node2.cfg 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/omero.properties 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/profiles/psql 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/rollover.cfg 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/Windows.cfg 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/error/maintainance.html 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/grid/README 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/grid/default.xml 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/grid/templates.xml 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/grid/windefault.xml 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/ice.config 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/internal.cfg 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/master.cfg 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/templates/robot.template 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/etc/testdropbox.config 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/history.rst 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/OMEZarrReader.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/activation.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/aggdesigner-algorithm.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/aircompressor.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/annotations.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/antlr.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/aopalliance.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/avatica-core.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/avatica-metrics.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/aws-java-sdk-core.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/aws-java-sdk-kms.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/aws-java-sdk-s3.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/base.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-all.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-anim.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-awt-util.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-bridge.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-codec.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-constants.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-css.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-dom.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-ext.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-extension.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-gui-util.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-gvt.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-i18n.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-parser.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-rasterizer-ext.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-rasterizer.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-script.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-slideshow.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-squiggle-ext.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-squiggle.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-svg-dom.jar 00:49:29 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/lib/client/batik-svgbrowser.jar 00:49:29 inflating: 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OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/schema.sql 00:49:31 inflating: OMERO.server-5.6.3-458-d399a6277c-ice36/sql/psql/OMERO5.4__0/views.sql 00:49:31 + rm -f OMERO.server-5.6.3-458-d399a6277c-ice36.zip 00:49:31 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-458-d399a6277c-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:49:31 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:49:31 ++ deactivate nondestructive 00:49:31 ++ '[' -n '' ']' 00:49:31 ++ '[' -n '' ']' 00:49:31 ++ '[' -n /bin/bash -o -n '' ']' 00:49:31 ++ hash -r 00:49:31 ++ '[' -n '' ']' 00:49:31 ++ unset VIRTUAL_ENV 00:49:31 ++ '[' '!' nondestructive = nondestructive ']' 00:49:31 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:49:31 ++ export VIRTUAL_ENV 00:49:31 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:49:31 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:49:31 ++ export PATH 00:49:31 ++ '[' -n '' ']' 00:49:31 ++ '[' -z '' ']' 00:49:31 ++ _OLD_VIRTUAL_PS1= 00:49:31 ++ PS1='(.venv3) ' 00:49:31 ++ export PS1 00:49:31 ++ '[' -n /bin/bash -o -n '' ']' 00:49:31 ++ hash -r 00:49:31 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:49:32 Collecting zeroc-ice==3.6.5 00:49:32 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:49:34 Installing collected packages: zeroc-ice 00:49:35 Successfully installed zeroc-ice-3.6.5 00:49:35 + pip install -U pip future 00:49:35 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:49:36 Collecting pip 00:49:36 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 00:49:36 Collecting future 00:49:36 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:49:36 Installing collected packages: pip, future 00:49:36 Attempting uninstall: pip 00:49:36 Found existing installation: pip 21.2.3 00:49:36 Uninstalling pip-21.2.3: 00:49:36 Successfully uninstalled pip-21.2.3 00:49:38 Successfully installed future-1.0.0 pip-24.0 00:49:38 + pip install markdown 00:49:39 Collecting markdown 00:49:39 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 00:49:39 Collecting importlib-metadata>=4.4 (from markdown) 00:49:39 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB) 00:49:40 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 00:49:40 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) 00:49:40 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 00:49:40 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB) 00:49:40 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) 00:49:40 Installing collected packages: zipp, importlib-metadata, markdown 00:49:40 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1 00:49:40 + pip install reportlab 00:49:42 Collecting reportlab 00:49:42 Using cached reportlab-4.2.0-py3-none-any.whl.metadata (1.4 kB) 00:49:42 Collecting pillow>=9.0.0 (from reportlab) 00:49:42 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 00:49:42 Collecting chardet (from reportlab) 00:49:42 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:49:42 Using cached reportlab-4.2.0-py3-none-any.whl (1.9 MB) 00:49:42 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 00:49:43 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:49:43 Installing collected packages: pillow, chardet, reportlab 00:49:44 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.2.0 00:49:44 + pip install omego 00:49:47 Collecting omego 00:49:47 Using cached omego-0.7.0-py3-none-any.whl 00:49:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:49:47 Collecting yaclifw>=0.1.1 (from omego) 00:49:47 Using cached yaclifw-0.2.0-py3-none-any.whl 00:49:47 Collecting six (from yaclifw>=0.1.1->omego) 00:49:47 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 00:49:47 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 00:49:47 Installing collected packages: six, yaclifw, omego 00:49:47 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 00:49:47 + pip install tables 00:49:48 Collecting tables 00:49:48 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:49:49 Collecting numpy>=1.19.0 (from tables) 00:49:49 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:49:49 Collecting numexpr>=2.6.2 (from tables) 00:49:49 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) 00:49:49 Collecting packaging (from tables) 00:49:49 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) 00:49:49 Collecting py-cpuinfo (from tables) 00:49:49 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:49:49 Collecting blosc2>=2.3.0 (from tables) 00:49:49 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:49:49 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:49:49 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 00:49:50 Collecting msgpack (from blosc2>=2.3.0->tables) 00:49:50 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 00:49:50 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:49:50 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:49:50 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB) 00:49:50 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:49:50 Using cached packaging-24.0-py3-none-any.whl (53 kB) 00:49:50 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:49:50 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 00:49:50 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 00:49:50 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:49:55 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2 00:49:55 + pip install jinja2 00:49:56 Collecting jinja2 00:49:56 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) 00:49:56 Collecting MarkupSafe>=2.0 (from jinja2) 00:49:56 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 00:49:56 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) 00:49:56 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 00:49:56 Installing collected packages: MarkupSafe, jinja2 00:49:56 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3 00:49:56 + pip install omero-py 00:49:57 Collecting omero-py 00:49:57 Using cached omero_py-5.19.2-py3-none-any.whl.metadata (6.6 kB) 00:49:57 Collecting urllib3<2 (from omero-py) 00:49:57 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) 00:49:57 Collecting appdirs (from omero-py) 00:49:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:49:57 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:49:57 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4) 00:49:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0) 00:49:57 Collecting PyYAML (from omero-py) 00:49:57 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:49:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:49:57 Collecting requests (from omero-py) 00:49:57 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) 00:49:57 Collecting portalocker (from omero-py) 00:49:57 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB) 00:49:58 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:49:58 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 00:49:58 Collecting idna<4,>=2.5 (from requests->omero-py) 00:49:58 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) 00:49:58 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:49:58 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) 00:49:58 Using cached omero_py-5.19.2-py3-none-any.whl (2.8 MB) 00:49:58 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 00:49:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:49:58 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB) 00:49:58 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 00:49:58 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 00:49:58 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) 00:49:58 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 00:49:58 Using cached idna-3.7-py3-none-any.whl (66 kB) 00:49:58 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py 00:50:01 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.7 omero-py-5.19.2 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18 00:50:01 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:50:02 Collecting omero-metadata 00:50:02 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-kvuke6m_/omero-metadata_97d8d70a208344ed84c28458cc59c72d 00:50:02 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-kvuke6m_/omero-metadata_97d8d70a208344ed84c28458cc59c72d 00:50:03 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 66302a182f42fed2e622d26be8c1c5ce811a3daf 00:50:03 Installing build dependencies: started 00:50:05 Installing build dependencies: finished with status 'done' 00:50:05 Getting requirements to build wheel: started 00:50:06 Getting requirements to build wheel: finished with status 'done' 00:50:06 Installing backend dependencies: started 00:50:07 Installing backend dependencies: finished with status 'done' 00:50:07 Preparing metadata (pyproject.toml): started 00:50:07 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:07 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.2) 00:50:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 00:50:07 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3) 00:50:08 Collecting pandas (from omero-metadata) 00:50:08 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 00:50:08 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18) 00:50:08 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:50:08 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:50:08 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:50:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0) 00:50:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:50:08 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0) 00:50:08 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2) 00:50:08 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 00:50:08 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:50:08 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:50:08 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:50:08 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 00:50:08 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:50:08 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 00:50:08 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 00:50:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 00:50:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7) 00:50:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2) 00:50:08 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 00:50:08 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:50:08 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 00:50:08 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 00:50:08 Building wheels for collected packages: omero-metadata 00:50:08 Building wheel for omero-metadata (pyproject.toml): started 00:50:09 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:50:09 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=039ac0099b499d7c2e5482db9fd735bcd5f0fd355ae1998891d6fc0af120b4f9 00:50:09 Stored in directory: /tmp/pip-ephem-wheel-cache-1zu4nt9j/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:50:09 Successfully built omero-metadata 00:50:09 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:50:16 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 00:50:16 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:50:17 Collecting omero-cli-render 00:50:17 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-e96w6m9u/omero-cli-render_dc25a8f1910149e5bd2819ac36da68f3 00:50:17 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-e96w6m9u/omero-cli-render_dc25a8f1910149e5bd2819ac36da68f3 00:50:18 Running command git checkout -b merge_ci --track origin/merge_ci 00:50:18 Switched to a new branch 'merge_ci' 00:50:18 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:50:18 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit fa2904416b710fc32f211276ea19de9dbb4a4c51 00:50:18 Installing build dependencies: started 00:50:20 Installing build dependencies: finished with status 'done' 00:50:20 Getting requirements to build wheel: started 00:50:21 Getting requirements to build wheel: finished with status 'done' 00:50:21 Installing backend dependencies: started 00:50:22 Installing backend dependencies: finished with status 'done' 00:50:22 Preparing metadata (pyproject.toml): started 00:50:22 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:22 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 00:50:22 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.2) 00:50:22 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0) 00:50:22 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18) 00:50:22 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:50:22 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:50:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0) 00:50:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:50:22 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0) 00:50:22 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2) 00:50:22 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 00:50:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7) 00:50:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2) 00:50:22 Building wheels for collected packages: omero-cli-render 00:50:22 Building wheel for omero-cli-render (pyproject.toml): started 00:50:23 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:50:23 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=f9612e80e3406c2b78fb8ed4eb753598264406a4f3d24d4104e660bab27dc992 00:50:23 Stored in directory: /tmp/pip-ephem-wheel-cache-rrppb5ls/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:50:23 Successfully built omero-cli-render 00:50:23 Installing collected packages: omero-cli-render 00:50:23 Successfully installed omero-cli-render-0.8.1.dev0 00:50:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:50:24 Collecting omero-cli-duplicate 00:50:24 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-93la6bj2/omero-cli-duplicate_99bd959ed9424bbcb6403572b0bf3c9f 00:50:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-93la6bj2/omero-cli-duplicate_99bd959ed9424bbcb6403572b0bf3c9f 00:50:25 Running command git checkout -b merge_ci --track origin/merge_ci 00:50:25 Switched to a new branch 'merge_ci' 00:50:25 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:50:25 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit f761acbf2a1bf1b35395639187cfc8232482a39e 00:50:25 Installing build dependencies: started 00:50:27 Installing build dependencies: finished with status 'done' 00:50:27 Getting requirements to build wheel: started 00:50:27 Getting requirements to build wheel: finished with status 'done' 00:50:27 Installing backend dependencies: started 00:50:28 Installing backend dependencies: finished with status 'done' 00:50:28 Preparing metadata (pyproject.toml): started 00:50:29 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:29 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.2) 00:50:29 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18) 00:50:29 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:50:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:50:29 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:50:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0) 00:50:29 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 00:50:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:50:29 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0) 00:50:29 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2) 00:50:29 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 00:50:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7) 00:50:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2) 00:50:29 Building wheels for collected packages: omero-cli-duplicate 00:50:29 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:50:29 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:50:29 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=6bb980073ba76b17d6d54dc14a0f908cf88f5a0e4d035aac1e38c435dacfdfe2 00:50:29 Stored in directory: /tmp/pip-ephem-wheel-cache-7iwn45kz/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:50:29 Successfully built omero-cli-duplicate 00:50:29 Installing collected packages: omero-cli-duplicate 00:50:29 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:50:30 + pip install omero-certificates 00:50:30 Collecting omero-certificates 00:50:30 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 00:50:30 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.2) 00:50:30 Collecting distro==1.8.0 (from omero-certificates) 00:50:30 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 00:50:30 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18) 00:50:30 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:50:30 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:50:30 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:50:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0) 00:50:30 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 00:50:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:50:30 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0) 00:50:30 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2) 00:50:30 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 00:50:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7) 00:50:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2) 00:50:31 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 00:50:31 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 00:50:31 Installing collected packages: distro, omero-certificates 00:50:32 Successfully installed distro-1.8.0 omero-certificates-0.3.2 00:50:32 + for x in *.tar.gz 00:50:32 + pip install -U omero_dropbox-5.6.3.dev0.tar.gz 00:50:32 Processing ./omero_dropbox-5.6.3.dev0.tar.gz 00:50:32 Installing build dependencies: started 00:50:35 Installing build dependencies: finished with status 'done' 00:50:35 Getting requirements to build wheel: started 00:50:35 Getting requirements to build wheel: finished with status 'done' 00:50:35 Installing backend dependencies: started 00:50:36 Installing backend dependencies: finished with status 'done' 00:50:36 Preparing metadata (pyproject.toml): started 00:50:36 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:36 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.2) 00:50:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18) 00:50:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4) 00:50:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0) 00:50:36 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4) 00:50:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.3.0) 00:50:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1) 00:50:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5) 00:50:36 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0) 00:50:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2) 00:50:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2) 00:50:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.7) 00:50:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2) 00:50:37 Building wheels for collected packages: omero-dropbox 00:50:37 Building wheel for omero-dropbox (pyproject.toml): started 00:50:37 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:50:37 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=828f526aed7804dfb8de348ef14d9bced78471f5bda138e6d5679a7948716289 00:50:37 Stored in directory: /home/omero/.cache/pip/wheels/f4/cc/2d/e8cb90723edb0dd09a23d7e300334e5aa51dc6579befeaf8c6 00:50:37 Successfully built omero-dropbox 00:50:37 Installing collected packages: omero-dropbox 00:50:37 Successfully installed omero-dropbox-5.6.3.dev0 00:50:38 + for x in *.tar.gz 00:50:38 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:50:38 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:50:38 Installing build dependencies: started 00:50:41 Installing build dependencies: finished with status 'done' 00:50:41 Getting requirements to build wheel: started 00:50:41 Getting requirements to build wheel: finished with status 'done' 00:50:41 Installing backend dependencies: started 00:50:42 Installing backend dependencies: finished with status 'done' 00:50:42 Preparing metadata (pyproject.toml): started 00:50:43 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:43 Building wheels for collected packages: omero_marshal 00:50:43 Building wheel for omero_marshal (pyproject.toml): started 00:50:43 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:50:43 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=4f1981d70580ac814417cc2167a845f7b14d73e7b4f5dcad05ffde78bb2b8c6c 00:50:43 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:50:43 Successfully built omero_marshal 00:50:43 Installing collected packages: omero_marshal 00:50:44 Successfully installed omero_marshal-0.9.1.dev0 00:50:44 + for x in *.tar.gz 00:50:44 + pip install -U omero_py-5.19.3.dev0.tar.gz 00:50:44 Processing ./omero_py-5.19.3.dev0.tar.gz 00:50:45 Installing build dependencies: started 00:50:48 Installing build dependencies: finished with status 'done' 00:50:48 Getting requirements to build wheel: started 00:50:48 Getting requirements to build wheel: finished with status 'done' 00:50:48 Installing backend dependencies: started 00:50:50 Installing backend dependencies: finished with status 'done' 00:50:50 Preparing metadata (pyproject.toml): started 00:50:52 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:52 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.18) 00:50:52 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.4.4) 00:50:52 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.0.0) 00:50:52 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.4) 00:50:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (10.3.0) 00:50:52 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (6.0.1) 00:50:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (3.6.5) 00:50:52 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.31.0) 00:50:52 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.8.2) 00:50:52 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.3.2) 00:50:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.7) 00:50:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (2024.2.2) 00:50:52 Building wheels for collected packages: omero-py 00:50:52 Building wheel for omero-py (pyproject.toml): started 00:50:54 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:50:54 Created wheel for omero-py: filename=omero_py-5.19.3.dev0-py3-none-any.whl size=2783067 sha256=bb2ec7755fec724219c028bcada048b0ed8daafc95358afaec3ae5e621dd4775 00:50:54 Stored in directory: /home/omero/.cache/pip/wheels/da/30/d3/f2a83bdd6a0fbad84aa00dad9eb9431eedebb0e1310be5dd41 00:50:54 Successfully built omero-py 00:50:54 Installing collected packages: omero-py 00:50:54 Attempting uninstall: omero-py 00:50:54 Found existing installation: omero-py 5.19.2 00:50:54 Uninstalling omero-py-5.19.2: 00:50:55 Successfully uninstalled omero-py-5.19.2 00:50:58 Successfully installed omero-py-5.19.3.dev0 00:50:59 + for x in *.tar.gz 00:50:59 + pip install -U omero_scripts-5.8.3.dev0.tar.gz 00:50:59 Processing ./omero_scripts-5.8.3.dev0.tar.gz 00:50:59 Installing build dependencies: started 00:51:02 Installing build dependencies: finished with status 'done' 00:51:02 Getting requirements to build wheel: started 00:51:03 Getting requirements to build wheel: finished with status 'done' 00:51:03 Installing backend dependencies: started 00:51:04 Installing backend dependencies: finished with status 'done' 00:51:04 Preparing metadata (pyproject.toml): started 00:51:05 Preparing metadata (pyproject.toml): finished with status 'done' 00:51:05 Building wheels for collected packages: omero-scripts 00:51:05 Building wheel for omero-scripts (pyproject.toml): started 00:51:05 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:51:05 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116568 sha256=ae256b676379f471388b7ab4d7a9ce34ae0a2b38039a5a95802f7b73329baa45 00:51:05 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446 00:51:05 Successfully built omero-scripts 00:51:05 Installing collected packages: omero-scripts 00:51:05 Successfully installed omero-scripts-5.8.3.dev0 00:51:06 + for x in *.tar.gz 00:51:06 + pip install -U omero_web-5.25.1.dev0.tar.gz 00:51:06 Processing ./omero_web-5.25.1.dev0.tar.gz 00:51:07 Installing build dependencies: started 00:51:10 Installing build dependencies: finished with status 'done' 00:51:10 Getting requirements to build wheel: started 00:51:10 Getting requirements to build wheel: finished with status 'done' 00:51:10 Installing backend dependencies: started 00:51:12 Installing backend dependencies: finished with status 'done' 00:51:12 Preparing metadata (pyproject.toml): started 00:51:13 Preparing metadata (pyproject.toml): finished with status 'done' 00:51:13 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.3.dev0) 00:51:13 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0) 00:51:13 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:51:13 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0) 00:51:13 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB) 00:51:13 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0) 00:51:13 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 00:51:14 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0) 00:51:14 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:51:14 Collecting django-csp (from omero-web==5.25.1.dev0) 00:51:14 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:51:14 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0) 00:51:14 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB) 00:51:14 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0) 00:51:14 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB) 00:51:14 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0) 00:51:14 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.3.0) 00:51:14 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1) 00:51:14 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2) 00:51:14 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0) 00:51:14 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 00:51:14 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 00:51:14 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 00:51:14 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB) 00:51:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18) 00:51:14 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4) 00:51:14 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0) 00:51:14 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4) 00:51:14 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1) 00:51:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5) 00:51:14 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0) 00:51:15 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 00:51:15 Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB) 00:51:15 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2) 00:51:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.7) 00:51:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2) 00:51:15 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:51:15 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 00:51:15 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:51:15 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB) 00:51:15 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB) 00:51:15 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB) 00:51:15 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:51:15 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 00:51:15 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB) 00:51:15 Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB) 00:51:15 Building wheels for collected packages: omero-web 00:51:15 Building wheel for omero-web (pyproject.toml): started 00:51:17 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:51:17 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770170 sha256=3318da5a4e5c87310756750de9faafce6ef22a6a0b0e4ba8dd79bcc306b2cfea 00:51:17 Stored in directory: /home/omero/.cache/pip/wheels/33/ba/09/ce4e387d041ff0c2197723e41a9f679d0a8e4d0d4f906c19c9 00:51:17 Successfully built omero-web 00:51:17 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 00:51:22 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.25.1.dev0 sqlparse-0.5.0 typing-extensions-4.11.0 whitenoise-6.6.0 00:51:22 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:51:22 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:51:22 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:51:22 --2024-04-26 00:51:22-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:51:23 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.108.133, ... 00:51:23 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 00:51:23 HTTP request sent, awaiting response... 200 OK 00:51:23 Length: 94637 (92K) [text/plain] 00:51:23 Saving to: ‘Figure_To_Pdf.py’ 00:51:23 00:51:23 0K .......... .......... .......... .......... .......... 54% 3.52M 0s 00:51:23 50K .......... .......... .......... .......... .. 100% 5.52M=0.02s 00:51:23 00:51:23 2024-04-26 00:51:23 (4.22 MB/s) - ‘Figure_To_Pdf.py’ saved [94637/94637] 00:51:23 00:51:23 + chmod 755 Figure_To_Pdf.py 00:51:23 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:51:23 + omero config set omero.db.name OMERO-server 00:51:26 + omero config set omero.db.host pg 00:51:27 + omero config set omero.db.user postgres 00:51:29 + omero config set omero.data.dir /home/omero/omero-server-data 00:51:31 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:51:32 + omero config set omero.db.poolsize 25 00:51:34 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:51:36 + omero config set omero.security.trustStorePassword changeit 00:51:38 + omero config set omero.mail.config true 00:51:40 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:51:42 + omero config set omero.mail.host smtp.dundee.ac.uk 00:51:44 + omero certificates 00:51:46 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:51:46 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:51:46 + '[' false = true ']' 00:51:46 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:51:46 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:51:46 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:51:47 2024-04-26 00:51:47,201 [ omego.db] DEBUG dbcommand => upgrade 00:51:47 2024-04-26 00:51:47,201 [ omego.db] DEBUG dbhost => localhost 00:51:47 2024-04-26 00:51:47,201 [ omego.db] DEBUG dbname => OMERO-server 00:51:47 2024-04-26 00:51:47,201 [ omego.db] DEBUG dbpass => omero 00:51:47 2024-04-26 00:51:47,201 [ omego.db] DEBUG dbuser => omero 00:51:47 2024-04-26 00:51:47,201 [ omego.db] DEBUG rootpass => omero 00:51:47 2024-04-26 00:51:47,201 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:51:47 2024-04-26 00:51:47,202 [omego.extern] INFO Executing : omero version 00:51:48 OMERO.py version: 00:51:48 OMERO.server version: 00:51:48 5.6.3-458-d399a6277c-ice36 00:51:48 5.19.3.dev0 00:51:49 2024-04-26 00:51:49,293 [omego.extern] INFO Completed [2.092 s] 00:51:49 2024-04-26 00:51:49,294 [omego.extern] DEBUG Using omero CLI from omero 00:51:49 2024-04-26 00:51:49,294 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:51:49 2024-04-26 00:51:49,294 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:51:49 2024-04-26 00:51:49,294 [omego.extern] INFO Executing : omero config get --show-password 00:51:50 2024-04-26 00:51:50,881 [omego.extern] INFO Completed [1.586 s] 00:51:50 2024-04-26 00:51:50,881 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:51:50 2024-04-26 00:51:50,881 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:51:51 2024-04-26 00:51:51,087 [omego.extern] INFO Completed [0.205 s] 00:51:51 2024-04-26 00:51:51,087 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 00:51:51 2024-04-26 00:51:51,087 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 00:51:51 00:51:51 2024-04-26 00:51:51,087 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:51:51 2024-04-26 00:51:51,087 [omego.extern] INFO Executing : omero config get --show-password 00:51:52 2024-04-26 00:51:52,928 [omego.extern] INFO Completed [1.840 s] 00:51:52 2024-04-26 00:51:52,928 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:51:52 2024-04-26 00:51:52,928 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:51:53 2024-04-26 00:51:53,165 [omego.extern] INFO Completed [0.237 s] 00:51:53 2024-04-26 00:51:53,165 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.8") at port "5432".\n' 00:51:53 2024-04-26 00:51:53,166 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:51:53 2024-04-26 00:51:53,166 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:51:53 2024-04-26 00:51:53,166 [omego.extern] INFO Executing : omero config get --show-password 00:51:54 2024-04-26 00:51:54,930 [omego.extern] INFO Completed [1.765 s] 00:51:54 2024-04-26 00:51:54,931 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:51:54 2024-04-26 00:51:54,931 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:51:55 2024-04-26 00:51:55,048 [omego.extern] INFO Completed [0.116 s] 00:51:55 2024-04-26 00:51:55,048 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:51:55 2024-04-26 00:51:55,048 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:51:55 2024-04-26 00:51:55,050 [ omego.db] INFO Database is already at OMERO5.4__0 00:51:55 + export LANG=en_US.UTF-8 00:51:55 + LANG=en_US.UTF-8 00:51:55 + export LANGUAGE=en_US:en 00:51:55 + LANGUAGE=en_US:en 00:51:55 + export LC_ALL=en_US.UTF-8 00:51:55 + LC_ALL=en_US.UTF-8 00:51:55 + BUILD_ID=DONT_KILL_ME 00:51:55 + omero admin start 00:52:12 No descriptor given. Using etc/grid/default.xml 00:52:39 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:52:39 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:52:39 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:52:39 Waiting on startup. Use CTRL-C to exit 00:52:40 + omero admin waitup 00:52:41 Waiting on startup. Use CTRL-C to exit 00:52:41 + omero admin diagnostics 00:52:43 00:52:43 ================================================================================ 00:52:43 OMERO Diagnostics (admin) 00:52:43 ================================================================================ 00:52:43 00:52:43 Commands: java -version 11.0.22 (/usr/bin/java) 00:52:43 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:52:43 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:52:43 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:52:43 Commands: psql --version 16.2 (/usr/bin/psql) 00:52:43 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:52:43 00:52:43 Component: OMERO.py 5.19.3.dev0 00:52:43 Component: OMERO.server 5.6.3-458-d399a6277c-ice36 00:52:43 00:52:43 Server: icegridnode running 00:52:43 Server: Blitz-0 active (pid = 32194, enabled) 00:52:43 Server: DropBox active (pid = 32217, enabled) 00:52:43 Server: FileServer active (pid = 32225, enabled) 00:52:43 Server: Indexer-0 active (pid = 32263, enabled) 00:52:43 Server: MonitorServer active (pid = 32226, enabled) 00:52:43 Server: OMERO.Glacier2 active (pid = 32227, enabled) 00:52:43 Server: OMERO.IceStorm active (pid = 32231, enabled) 00:52:43 Server: PixelData-0 active (pid = 32230, enabled) 00:52:43 Server: Processor-0 activating (enabled) 00:52:44 Server: Tables-0 activating (enabled) 00:52:44 Server: TestDropBox inactive (enabled) 00:52:44 00:52:44 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:52:44 Log files: Blitz-0.log 25.3 KB errors=0 warnings=1 00:52:44 Log files: DropBox.log 1.2 KB 00:52:44 Log files: FileServer.log 114 B 00:52:44 Log files: Indexer-0.log 2.6 KB 00:52:44 Log files: MonitorServer.log 1.1 KB 00:52:44 Log files: PixelData-0.log 3.4 KB 00:52:44 Log files: Processor-0.log 592 B 00:52:44 Log files: Tables-0.log 841 B 00:52:44 Log files: TestDropBox.log n/a 00:52:44 Log files: master.err 2.1 KB 00:52:44 Log files: master.out 41.5 KB 00:52:44 Log files: Total size 0.08 MB 00:52:44 00:52:44 00:52:44 Environment:OMERO_HOME=(unset) 00:52:44 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:52:44 Environment:OMERO_NODE=(unset) 00:52:44 Environment:OMERO_MASTER=(unset) 00:52:44 Environment:OMERO_USERDIR=(unset) 00:52:44 Environment:OMERO_TMPDIR=(unset) 00:52:44 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:44 Environment:PYTHONPATH=(unset) 00:52:44 Environment:ICE_HOME=/opt/ice-3.6.5 00:52:44 Environment:LD_LIBRARY_PATH=(unset) 00:52:44 Environment:DYLD_LIBRARY_PATH=(unset) 00:52:44 00:52:44 OMERO SSL port:4064 00:52:44 OMERO TCP port:4063 00:52:44 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:52:44 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:52:44 00:52:44 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:52:44 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:52:44 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:52:44 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:52:44 00:52:44 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 26 April 2024 ef27a3cba972a716f702830c6d541f37efc92f66 00:52:44 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 26 April 2024 ef27a3cba972a716f702830c6d541f37efc92f66 00:52:44 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 26 April 2024 ef27a3cba972a716f702830c6d541f37efc92f66 00:52:44 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 26 April 2024 24b19c41345461ce3159c122860ca123b3580424 00:52:44 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 26 April 2024 24b19c41345461ce3159c122860ca123b3580424 00:52:44 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 26 April 2024 24b19c41345461ce3159c122860ca123b3580424 00:52:44 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 26 April 2024 24b19c41345461ce3159c122860ca123b3580424 00:52:44 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 26 April 2024 24b19c41345461ce3159c122860ca123b3580424 00:52:44 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 26 April 2024 24b19c41345461ce3159c122860ca123b3580424 00:52:44 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT 00:52:44 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT 00:52:44 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT 00:52:44 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT 00:52:44 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT 00:52:44 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT 00:52:44 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT 00:52:44 + deactivate 00:52:44 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:52:44 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:44 + export PATH 00:52:44 + unset _OLD_VIRTUAL_PATH 00:52:44 + '[' -n '' ']' 00:52:44 + '[' -n /bin/bash -o -n '' ']' 00:52:44 + hash -r 00:52:44 + '[' -n '' ']' 00:52:44 + unset VIRTUAL_ENV 00:52:44 + '[' '!' '' = nondestructive ']' 00:52:44 + unset -f deactivate 00:52:44 Finished: SUCCESS