19:46:36 Started by user devspace 19:46:36 Running as SYSTEM 19:46:36 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 19:46:36 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11249969185620403318.sh 19:46:36 + source /home/settings.env 19:46:36 ++ OMERO_DB_HOST=pg 19:46:36 ++ OMERO_DB_USER=postgres 19:46:36 ++ OMERO_DB_PASS= 19:46:36 ++ OMERO_ROOT_PASS=omero 19:46:36 ++ OMERO_DATA_DIR=/OMERO 19:46:36 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 19:46:36 + OMERO_DB_NAME=OMERO-server 19:46:36 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 19:46:36 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 19:46:36 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 19:46:36 + OMERO_DATA_DIR=/home/omero/omero-server-data 19:46:36 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 19:46:36 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 19:46:36 ++ deactivate nondestructive 19:46:36 ++ '[' -n '' ']' 19:46:36 ++ '[' -n '' ']' 19:46:36 ++ hash -r 19:46:36 ++ '[' -n '' ']' 19:46:36 ++ unset VIRTUAL_ENV 19:46:36 ++ unset VIRTUAL_ENV_PROMPT 19:46:36 ++ '[' '!' nondestructive = nondestructive ']' 19:46:36 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 19:46:36 ++ export VIRTUAL_ENV 19:46:36 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 19:46:36 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 19:46:36 ++ export PATH 19:46:36 ++ '[' -n '' ']' 19:46:36 ++ '[' -z '' ']' 19:46:36 ++ _OLD_VIRTUAL_PS1= 19:46:36 ++ PS1='(.venv3) ' 19:46:36 ++ export PS1 19:46:36 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 19:46:36 ++ export VIRTUAL_ENV_PROMPT 19:46:36 ++ hash -r 19:46:36 + omero admin stop 19:47:07 Server not running 19:47:08 + echo not running 19:47:08 not running 19:47:08 + sleep 5 19:47:13 + deactivate 19:47:13 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 19:47:13 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 19:47:13 + export PATH 19:47:13 + unset _OLD_VIRTUAL_PATH 19:47:13 + '[' -n '' ']' 19:47:13 + hash -r 19:47:13 + '[' -n '' ']' 19:47:13 + unset VIRTUAL_ENV 19:47:13 + unset VIRTUAL_ENV_PROMPT 19:47:13 + '[' '!' '' = nondestructive ']' 19:47:13 + unset -f deactivate 19:47:13 + rm -rf /home/omero/workspace/OMERO-server/.venv3 19:49:34 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 19:49:55 + '[' false = true ']' 19:49:55 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 19:49:55 Skipping PURGE_DATA:CleanDbAndRepo 19:49:55 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 19:50:01 Copied 1 artifact from "OMERO-build" build number 52 19:50:01 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 45 19:50:01 Copied 2 artifacts from "OMERO-build-build" build number 57 19:50:01 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17615794239844922582.sh 19:50:01 + source /home/settings.env 19:50:01 ++ OMERO_DB_HOST=pg 19:50:01 ++ OMERO_DB_USER=postgres 19:50:01 ++ OMERO_DB_PASS= 19:50:01 ++ OMERO_ROOT_PASS=omero 19:50:01 ++ OMERO_DATA_DIR=/OMERO 19:50:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 19:50:01 + OMERO_DB_NAME=OMERO-server 19:50:01 + OMERO_DATA_DIR=/home/omero/omero-server-data 19:50:01 + mkdir -p /home/omero/omero-server-data 19:50:01 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 19:50:01 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 19:50:01 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 19:50:01 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 19:50:01 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 19:50:01 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 19:50:01 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 19:50:01 ++ ls OMERO.server-5.6.3-655-4199fa2d41-ice36-b52.zip 19:50:01 + ZIP=OMERO.server-5.6.3-655-4199fa2d41-ice36-b52.zip 19:50:01 + '[' '!' -z '' ']' 19:50:01 + DIST=OMERO.server-5.6.3-655-4199fa2d41-ice36-b52 19:50:01 + unzip OMERO.server-5.6.3-655-4199fa2d41-ice36-b52.zip 19:50:01 Archive: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52.zip 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/blitz/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/grid/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/profiles/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/error/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/grid/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/luts/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/luts/janelia/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/luts/matplotlib/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/luts/ncsa_paledit/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/luts/seaborn/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/luts/wcif/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/omero/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/omero/analysis_scripts/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/omero/annotation_scripts/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/omero/export_scripts/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/omero/figure_scripts/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/omero/import_scripts/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/scripts/omero/util_scripts/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/server/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/share/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/share/licenses/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/misc/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__1/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__10/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__11/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__2/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__3/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__4/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__5/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__6/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__7/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__8/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__9/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3__4/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3__5/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3__6/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3__7/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.1__0/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.2__0/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.2__0/t/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.3__0/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.4__0/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4__0/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.0__0/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.1__1/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.2__0/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.3__0/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4DEV__1/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4DEV__2/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4DEV__3/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/var/ 19:50:01 creating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/var/tmp/ 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/LICENSE.txt 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/backup.cfg 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/blitz/mail-senders.example 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/blitz/mail-server.example 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/build.properties 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/env.bat 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/env.sh 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/hibernate.properties 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/ice.config 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/logback-cli.xml 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/logback-indexing-cli.xml 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/logback-indexing.xml 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/logback.xml 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/mime.types 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/node1.cfg 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/node2.cfg 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/omero.properties 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/profiles/psql 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/rollover.cfg 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/Windows.cfg 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/error/maintainance.html 19:50:01 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/grid/README 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/grid/default.xml 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/grid/templates.xml 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/grid/windefault.xml 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/ice.config 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/internal.cfg 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/master.cfg 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/templates/robot.template 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/etc/testdropbox.config 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/history.rst 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/OMEZarrReader.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/accessors-smart.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/activation.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/aggdesigner-algorithm.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/aircompressor.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/antlr.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/aopalliance.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/apiguardian-api.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/asm.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/avatica-core.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/avatica-metrics.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/aws-java-sdk-core.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/aws-java-sdk-kms.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/aws-java-sdk-s3.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/base.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-anim.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-awt-util.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-bridge.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-codec.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-constants.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-css.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-dom.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-ext.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-gvt.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-i18n.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-parser.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-script.jar 19:50:02 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/lib/client/batik-shared-resources.jar 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OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__4/OMERO3__5.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__5/OMERO3A__4.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__6/OMERO3A__5.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__7/OMERO3A__6.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__8/OMERO3A__6.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3A__9/OMERO3A__8.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3__4/OMERO3__1.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3__5/OMERO3__4.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3__6/OMERO3__5.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO3__7/OMERO3__6.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.1__0/OMERO4__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO4__0/OMERO3A__11.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/psql-footer.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/psql-header.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/schema.sql 19:50:15 inflating: OMERO.server-5.6.3-655-4199fa2d41-ice36-b52/sql/psql/OMERO5.4__0/views.sql 19:50:16 + rm -f OMERO.server-5.6.3-655-4199fa2d41-ice36-b52.zip 19:50:16 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-655-4199fa2d41-ice36-b52 /home/omero/workspace/OMERO-server/OMERO.server 19:50:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 19:50:16 ++ deactivate nondestructive 19:50:16 ++ '[' -n '' ']' 19:50:16 ++ '[' -n '' ']' 19:50:16 ++ hash -r 19:50:16 ++ '[' -n '' ']' 19:50:16 ++ unset VIRTUAL_ENV 19:50:16 ++ unset VIRTUAL_ENV_PROMPT 19:50:16 ++ '[' '!' nondestructive = nondestructive ']' 19:50:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 19:50:16 ++ export VIRTUAL_ENV 19:50:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 19:50:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 19:50:16 ++ export PATH 19:50:16 ++ '[' -n '' ']' 19:50:16 ++ '[' -z '' ']' 19:50:16 ++ _OLD_VIRTUAL_PS1= 19:50:16 ++ PS1='(.venv3) ' 19:50:16 ++ export PS1 19:50:16 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 19:50:16 ++ export VIRTUAL_ENV_PROMPT 19:50:16 ++ hash -r 19:50:16 + pip install -U pip 19:50:17 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 19:50:17 Collecting pip 19:50:17 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 19:50:17 Installing collected packages: pip 19:50:17 Attempting uninstall: pip 19:50:17 Found existing installation: pip 22.3.1 19:50:18 Uninstalling pip-22.3.1: 19:50:18 Successfully uninstalled pip-22.3.1 19:50:31 Successfully installed pip-26.2.1 19:50:31 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 19:50:32 Collecting zeroc-ice==3.6.5 19:50:32 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 19:50:35 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.6 MB/s 0:00:02 19:50:35 Installing collected packages: zeroc-ice 19:50:38 Successfully installed zeroc-ice-3.6.5 19:50:38 + pip install markdown 19:50:39 Collecting markdown 19:50:39 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB) 19:50:39 Using cached markdown-3.10.3-py3-none-any.whl (110 kB) 19:50:39 Installing collected packages: markdown 19:50:40 Successfully installed markdown-3.10.3 19:50:40 + pip install reportlab 19:50:41 Collecting reportlab 19:50:41 Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB) 19:50:41 Collecting pillow>=9.0.0 (from reportlab) 19:50:41 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 19:50:41 Collecting charset-normalizer (from reportlab) 19:50:41 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB) 19:50:41 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB) 19:50:41 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 19:50:41 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB) 19:50:41 Installing collected packages: pillow, charset-normalizer, reportlab 19:50:49 19:50:49 Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.0 19:50:49 + pip install omego 19:50:50 Collecting omego 19:50:50 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 19:50:50 Collecting future (from omego) 19:50:50 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 19:50:51 Collecting yaclifw>=0.1.1 (from omego) 19:50:51 Using cached yaclifw-0.2.0-py3-none-any.whl 19:50:51 Collecting six (from yaclifw>=0.1.1->omego) 19:50:51 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 19:50:51 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 19:50:51 Using cached future-1.0.0-py3-none-any.whl (491 kB) 19:50:51 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 19:50:51 Installing collected packages: six, future, yaclifw, omego 19:50:56 19:50:56 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 19:50:56 + pip install tables 19:50:57 Collecting tables 19:50:57 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 19:50:57 Collecting numpy>=1.20.0 (from tables) 19:50:57 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 19:50:57 Collecting numexpr>=2.6.2 (from tables) 19:50:57 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 19:50:57 Collecting packaging (from tables) 19:50:57 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 19:50:57 Collecting py-cpuinfo (from tables) 19:50:57 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 19:50:58 Collecting blosc2>=2.3.0 (from tables) 19:50:58 Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) 19:50:58 Collecting ndindex (from blosc2>=2.3.0->tables) 19:50:58 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 19:50:58 Collecting msgpack (from blosc2>=2.3.0->tables) 19:50:58 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 19:50:58 Collecting pydantic (from blosc2>=2.3.0->tables) 19:50:58 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB) 19:50:58 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 19:50:58 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 19:50:58 Collecting rich (from blosc2>=2.3.0->tables) 19:50:58 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 19:50:58 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 19:50:58 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) 19:50:59 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 19:50:59 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB) 19:50:59 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 19:50:59 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 19:50:59 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 19:50:59 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 19:50:59 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 19:50:59 Using cached idna-3.19-py3-none-any.whl.metadata (9.2 kB) 19:50:59 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 19:50:59 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 19:50:59 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 19:50:59 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 19:50:59 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 19:50:59 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 19:50:59 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 19:50:59 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 19:50:59 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 19:50:59 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 19:50:59 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 19:50:59 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 19:51:00 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables) 19:51:00 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 19:51:00 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 19:51:00 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 19:51:00 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 19:51:00 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 19:51:01 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 19:51:01 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) 19:51:01 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 19:51:01 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 19:51:01 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 19:51:01 Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.5 MB) 19:51:01 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 19:51:01 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 19:51:01 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 19:51:01 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 19:51:01 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 19:51:01 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 19:51:01 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 19:51:01 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 19:51:01 Using cached anyio-4.14.2-py3-none-any.whl (125 kB) 19:51:01 Using cached idna-3.19-py3-none-any.whl (68 kB) 19:51:01 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 19:51:01 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 19:51:01 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB) 19:51:01 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 19:51:01 Using cached packaging-26.3-py3-none-any.whl (129 kB) 19:51:01 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 19:51:02 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB) 19:51:02 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 19:51:02 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 19:51:02 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 19:51:02 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 19:51:02 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) 19:51:02 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 19:51:02 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 19:51:02 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) 19:51:02 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 19:51:47 19:51:47 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.11.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.19 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.4 typing_extensions-4.16.0 19:51:47 + pip install jinja2 19:51:48 Collecting jinja2 19:51:48 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 19:51:49 Collecting MarkupSafe>=2.0 (from jinja2) 19:51:49 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 19:51:49 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 19:51:49 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 19:51:49 Installing collected packages: MarkupSafe, jinja2 19:51:50 19:51:50 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 19:51:50 + pip install omero-py 19:51:51 Collecting omero-py 19:51:51 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 19:51:51 Collecting appdirs (from omero-py) 19:51:51 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 19:51:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 19:51:51 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 19:51:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 19:51:51 Collecting PyYAML (from omero-py) 19:51:51 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 19:51:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 19:51:51 Collecting requests (from omero-py) 19:51:51 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 19:51:51 Collecting portalocker (from omero-py) 19:51:51 Using cached portalocker-4.1.0-py3-none-any.whl.metadata (11 kB) 19:51:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1) 19:51:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.19) 19:51:52 Collecting urllib3<3,>=1.26 (from requests->omero-py) 19:51:52 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) 19:51:52 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 19:51:52 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 19:51:52 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 19:51:52 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB) 19:51:52 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 19:51:52 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 19:51:52 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 19:51:52 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 19:52:09 19:52:09 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 urllib3-2.7.0 19:52:09 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 19:52:10 Collecting omero-metadata 19:52:10 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-nnubte3a/omero-metadata_b1aa574bde704ef28c52182ecf747f43 19:52:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-nnubte3a/omero-metadata_b1aa574bde704ef28c52182ecf747f43 19:52:11 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a292a4f14f3e6ffde1acc5ba08a7ca0ebf1a29b7 19:52:11 Installing build dependencies: started 19:52:13 Installing build dependencies: finished with status 'done' 19:52:13 Getting requirements to build wheel: started 19:52:13 Getting requirements to build wheel: finished with status 'done' 19:52:13 Preparing metadata (pyproject.toml): started 19:52:13 Preparing metadata (pyproject.toml): finished with status 'done' 19:52:13 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 19:52:14 Collecting pandas<3,>=2 (from omero-metadata) 19:52:14 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 19:52:14 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 19:52:14 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 19:52:14 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 19:52:14 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 19:52:14 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB) 19:52:14 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 19:52:14 Using cached tzdata-2026.3-py2.py3-none-any.whl.metadata (1.4 kB) 19:52:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 19:52:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 19:52:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 19:52:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 19:52:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 19:52:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 19:52:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.1.0) 19:52:14 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 19:52:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1) 19:52:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.19) 19:52:14 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) 19:52:14 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 19:52:14 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 19:52:14 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 19:52:14 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB) 19:52:14 Using cached tzdata-2026.3-py2.py3-none-any.whl (348 kB) 19:52:14 Building wheels for collected packages: omero-metadata 19:52:14 Building wheel for omero-metadata (pyproject.toml): started 19:52:15 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 19:52:15 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=5d9e2796a90b365dc5618d5c6527fe3059d4bc524c643e70f80f386fd903a9c6 19:52:15 Stored in directory: /tmp/pip-ephem-wheel-cache-znysnl6y/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 19:52:15 Successfully built omero-metadata 19:52:15 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 19:53:02 19:53:02 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.3 19:53:02 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 19:53:03 Collecting omero-cli-render 19:53:03 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-yzcl3vxz/omero-cli-render_be642b582a48443eb465a81f98e8ec5c 19:53:03 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-yzcl3vxz/omero-cli-render_be642b582a48443eb465a81f98e8ec5c 19:53:04 Running command git checkout -b merge_ci --track origin/merge_ci 19:53:05 Switched to a new branch 'merge_ci' 19:53:05 branch 'merge_ci' set up to track 'origin/merge_ci'. 19:53:05 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit d65945971b5d4b35fa8f78301dd96724e1b66b49 19:53:05 Installing build dependencies: started 19:53:06 Installing build dependencies: finished with status 'done' 19:53:06 Getting requirements to build wheel: started 19:53:06 Getting requirements to build wheel: finished with status 'done' 19:53:06 Preparing metadata (pyproject.toml): started 19:53:06 Preparing metadata (pyproject.toml): finished with status 'done' 19:53:06 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 19:53:06 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 19:53:06 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 19:53:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 19:53:06 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 19:53:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 19:53:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 19:53:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 19:53:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.1.0) 19:53:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1) 19:53:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.19) 19:53:06 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) 19:53:06 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 19:53:06 Building wheels for collected packages: omero-cli-render 19:53:06 Building wheel for omero-cli-render (pyproject.toml): started 19:53:07 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 19:53:07 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=c5f76a17ba6a2401b54497944bc479483e64ffaaeff7df9bf05e4f3b2bd2c0d8 19:53:07 Stored in directory: /tmp/pip-ephem-wheel-cache-3l_5_tec/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 19:53:07 Successfully built omero-cli-render 19:53:07 Installing collected packages: omero-cli-render 19:53:07 Successfully installed omero-cli-render-0.8.2.dev0 19:53:07 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 19:53:08 Collecting omero-cli-duplicate 19:53:08 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-asxh7dr7/omero-cli-duplicate_1c12c3789877484b86621acf528d5bce 19:53:08 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-asxh7dr7/omero-cli-duplicate_1c12c3789877484b86621acf528d5bce 19:53:09 Running command git checkout -b merge_ci --track origin/merge_ci 19:53:09 Switched to a new branch 'merge_ci' 19:53:09 branch 'merge_ci' set up to track 'origin/merge_ci'. 19:53:09 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit c68dc6a63687f99875baad0ba06e6bfd68a599fb 19:53:09 Installing build dependencies: started 19:53:11 Installing build dependencies: finished with status 'done' 19:53:11 Getting requirements to build wheel: started 19:53:11 Getting requirements to build wheel: finished with status 'done' 19:53:11 Preparing metadata (pyproject.toml): started 19:53:11 Preparing metadata (pyproject.toml): finished with status 'done' 19:53:11 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 19:53:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 19:53:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 19:53:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 19:53:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 19:53:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 19:53:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 19:53:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 19:53:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.1.0) 19:53:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1) 19:53:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.19) 19:53:11 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 19:53:11 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 19:53:11 Building wheels for collected packages: omero-cli-duplicate 19:53:11 Building wheel for omero-cli-duplicate (pyproject.toml): started 19:53:12 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 19:53:12 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=e5f5463abbbb8badb5568775c54e92ef424e61c30014f24b9aca7ccae023a308 19:53:12 Stored in directory: /tmp/pip-ephem-wheel-cache-8spwc8i9/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 19:53:12 Successfully built omero-cli-duplicate 19:53:12 Installing collected packages: omero-cli-duplicate 19:53:12 Successfully installed omero-cli-duplicate-0.4.1.dev0 19:53:12 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 19:53:13 Collecting omero-cli-zarr 19:53:13 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-ua3gnu16/omero-cli-zarr_f8a1ff54e01640ebab63930067ee1432 19:53:13 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-ua3gnu16/omero-cli-zarr_f8a1ff54e01640ebab63930067ee1432 19:53:14 Running command git checkout -b merge_ci --track origin/merge_ci 19:53:15 Switched to a new branch 'merge_ci' 19:53:15 branch 'merge_ci' set up to track 'origin/merge_ci'. 19:53:15 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 6649bcd9287445302763e27e8c7a06e5a1976f8c 19:53:15 Installing build dependencies: started 19:53:16 Installing build dependencies: finished with status 'done' 19:53:16 Getting requirements to build wheel: started 19:53:16 Getting requirements to build wheel: finished with status 'done' 19:53:16 Installing backend dependencies: started 19:53:18 Installing backend dependencies: finished with status 'done' 19:53:18 Preparing metadata (pyproject.toml): started 19:53:18 Preparing metadata (pyproject.toml): finished with status 'done' 19:53:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 19:53:18 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 19:53:18 Using cached 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./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 19:53:19 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 19:53:20 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 19:53:20 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 19:53:20 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 19:53:20 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 19:53:20 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 19:53:20 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 19:53:20 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 19:53:20 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 19:53:20 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 19:53:20 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:20 Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB) 19:53:20 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:20 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 19:53:20 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 19:53:20 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:20 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 19:53:20 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 19:53:20 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:20 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB) 19:53:21 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:21 Using cached s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB) 19:53:21 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:21 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB) 19:53:21 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:21 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB) 19:53:21 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:21 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) 19:53:21 Requirement already satisfied: annotated-types>=0.6.0 in 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(from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:22 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) 19:53:22 Collecting botocore<1.43.57,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:23 Using cached botocore-1.43.56-py3-none-any.whl.metadata (5.6 kB) 19:53:23 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:23 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) 19:53:23 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 19:53:23 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 19:53:23 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charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.5.1) 19:53:26 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22) 19:53:26 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB) 19:53:26 Using cached dask-2026.7.1-py3-none-any.whl (1.5 MB) 19:53:26 Using cached click-8.4.2-py3-none-any.whl (119 kB) 19:53:26 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) 19:53:26 Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB) 19:53:26 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB) 19:53:26 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB) 19:53:26 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB) 19:53:26 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 19:53:26 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 19:53:26 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 19:53:26 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB) 19:53:26 Using cached aiobotocore-3.9.0-py3-none-any.whl (100 kB) 19:53:26 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 19:53:26 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 19:53:26 Using cached botocore-1.43.56-py3-none-any.whl (15.4 MB) 19:53:26 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 19:53:26 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 19:53:26 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB) 19:53:26 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB) 19:53:26 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 19:53:26 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 19:53:26 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 19:53:27 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 19:53:27 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) 19:53:27 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 19:53:27 Using cached imageio-2.37.4-py3-none-any.whl (318 kB) 19:53:27 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 19:53:27 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 19:53:27 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 19:53:27 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 19:53:27 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 19:53:27 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 19:53:27 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 19:53:27 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 19:53:27 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 19:53:27 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 19:53:27 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 19:53:27 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 19:53:27 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 19:53:28 Building wheels for collected packages: omero-cli-zarr 19:53:28 Building wheel for omero-cli-zarr (pyproject.toml): started 19:53:28 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 19:53:28 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev168+g6649bcd-py3-none-any.whl size=38399 sha256=e8372bf41c912b6fff853322d769a32a35b5edd27b56483714f45888ef78e9d0 19:53:28 Stored in directory: /tmp/pip-ephem-wheel-cache-8ckp28mv/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 19:53:28 Successfully built omero-cli-zarr 19:53:28 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 19:54:03 Attempting uninstall: pydantic-core 19:54:03 Found existing installation: pydantic_core 2.46.4 19:54:03 Uninstalling pydantic_core-2.46.4: 19:54:03 Successfully uninstalled pydantic_core-2.46.4 19:54:36 Attempting uninstall: pydantic 19:54:36 Found existing installation: pydantic 2.13.4 19:54:36 Uninstalling pydantic-2.13.4: 19:54:36 Successfully uninstalled pydantic-2.13.4 19:55:16 19:55:16 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev168+g6649bcd partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 19:55:16 + pip install omero-certificates 19:55:18 Collecting omero-certificates 19:55:18 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 19:55:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 19:55:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 19:55:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 19:55:18 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 19:55:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 19:55:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 19:55:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 19:55:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 19:55:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.1.0) 19:55:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1) 19:55:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.19) 19:55:18 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 19:55:18 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 19:55:18 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 19:55:19 Installing collected packages: omero-certificates 19:55:19 Successfully installed omero-certificates-0.4.0 19:55:19 + for x in *.tar.gz 19:55:19 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 19:55:20 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 19:55:20 Installing build dependencies: started 19:55:22 Installing build dependencies: finished with status 'done' 19:55:22 Getting requirements to build wheel: started 19:55:22 Getting requirements to build wheel: finished with status 'done' 19:55:22 Preparing metadata (pyproject.toml): started 19:55:23 Preparing metadata (pyproject.toml): finished with status 'done' 19:55:23 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 19:55:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 19:55:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 19:55:23 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 19:55:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 19:55:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 19:55:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 19:55:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 19:55:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.1.0) 19:55:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1) 19:55:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.19) 19:55:23 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 19:55:23 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 19:55:23 Building wheels for collected packages: omero-dropbox 19:55:23 Building wheel for omero-dropbox (pyproject.toml): started 19:55:23 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 19:55:23 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=40a05ff29add108c0a0af24b234e30f54e4fed7b19bb58762ac45afd8f0c63e9 19:55:23 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 19:55:23 Successfully built omero-dropbox 19:55:23 Installing collected packages: omero-dropbox 19:55:24 Successfully installed omero-dropbox-5.7.1.dev0 19:55:24 + for x in *.tar.gz 19:55:24 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 19:55:25 Processing ./omero_marshal-0.9.2.dev0.tar.gz 19:55:25 Installing build dependencies: started 19:55:27 Installing build dependencies: finished with status 'done' 19:55:27 Getting requirements to build wheel: started 19:55:27 Getting requirements to build wheel: finished with status 'done' 19:55:27 Preparing metadata (pyproject.toml): started 19:55:27 Preparing metadata (pyproject.toml): finished with status 'done' 19:55:27 Building wheels for collected packages: omero_marshal 19:55:27 Building wheel for omero_marshal (pyproject.toml): started 19:55:28 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 19:55:28 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=7f4f00114b0a774f7a332da286cce2b7a828d59ab75226a3037885c2a82f3450 19:55:28 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 19:55:28 Successfully built omero_marshal 19:55:28 Installing collected packages: omero_marshal 19:55:30 Successfully installed omero_marshal-0.9.2.dev0 19:55:30 + for x in *.tar.gz 19:55:30 + pip install -U omero_py-5.23.1.dev0.tar.gz 19:55:32 Processing ./omero_py-5.23.1.dev0.tar.gz 19:55:32 Installing build dependencies: started 19:55:33 Installing build dependencies: finished with status 'done' 19:55:33 Getting requirements to build wheel: started 19:55:34 Getting requirements to build wheel: finished with status 'done' 19:55:34 Preparing metadata (pyproject.toml): started 19:55:34 Preparing metadata (pyproject.toml): finished with status 'done' 19:55:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 19:55:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 19:55:34 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 19:55:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 19:55:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 19:55:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 19:55:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 19:55:34 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.1.0) 19:55:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1) 19:55:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.19) 19:55:34 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0) 19:55:34 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 19:55:34 Building wheels for collected packages: omero-py 19:55:34 Building wheel for omero-py (pyproject.toml): started 19:55:35 Building wheel for omero-py (pyproject.toml): finished with status 'done' 19:55:35 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786959 sha256=d0bda51c6070e6745a5b0d2d91e72511b1593e6c03336cae7d37b97ee8ab3acf 19:55:35 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 19:55:35 Successfully built omero-py 19:55:36 Installing collected packages: omero-py 19:55:36 Attempting uninstall: omero-py 19:55:36 Found existing installation: omero-py 5.23.0 19:55:37 Uninstalling omero-py-5.23.0: 19:55:50 Successfully uninstalled omero-py-5.23.0 19:56:05 Successfully installed omero-py-5.23.1.dev0 19:56:05 + for x in *.tar.gz 19:56:05 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 19:56:06 Processing ./omero_scripts-5.10.1.dev0.tar.gz 19:56:06 Installing build dependencies: started 19:56:08 Installing build dependencies: finished with status 'done' 19:56:08 Getting requirements to build wheel: started 19:56:08 Getting requirements to build wheel: finished with status 'done' 19:56:08 Preparing metadata (pyproject.toml): started 19:56:08 Preparing metadata (pyproject.toml): finished with status 'done' 19:56:08 Building wheels for collected packages: omero-scripts 19:56:08 Building wheel for omero-scripts (pyproject.toml): started 19:56:09 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 19:56:09 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=156e79cf58df84ac052611d4d6f86cfc0ea03af723b70f167e3bf61317acf56f 19:56:09 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 19:56:09 Successfully built omero-scripts 19:56:09 Installing collected packages: omero-scripts 19:56:10 Successfully installed omero-scripts-5.10.1.dev0 19:56:10 + for x in *.tar.gz 19:56:10 + pip install -U omero_web-5.32.1.dev0.tar.gz 19:56:11 Processing ./omero_web-5.32.1.dev0.tar.gz 19:56:11 Installing build dependencies: started 19:56:13 Installing build dependencies: finished with status 'done' 19:56:13 Getting requirements to build wheel: started 19:56:13 Getting requirements to build wheel: finished with status 'done' 19:56:13 Preparing metadata (pyproject.toml): started 19:56:13 Preparing metadata (pyproject.toml): finished with status 'done' 19:56:13 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0) 19:56:14 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0) 19:56:14 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 19:56:14 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0) 19:56:14 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB) 19:56:14 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0) 19:56:14 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 19:56:14 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0) 19:56:14 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 19:56:14 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0) 19:56:14 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 19:56:14 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0) 19:56:14 Using cached gunicorn-26.1.0-py3-none-any.whl.metadata (5.5 kB) 19:56:14 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0) 19:56:14 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0) 19:56:14 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (2026.3.post1) 19:56:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.1.0) 19:56:14 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.3) 19:56:14 Collecting importlib-resources (from omero-web==5.32.1.dev0) 19:56:15 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 19:56:15 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 19:56:15 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 19:56:15 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 19:56:15 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 19:56:15 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1) 19:56:15 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) 19:56:15 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 19:56:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4) 19:56:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0) 19:56:15 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6) 19:56:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3) 19:56:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5) 19:56:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2) 19:56:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.5.1) 19:56:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.19) 19:56:15 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0) 19:56:15 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22) 19:56:15 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 19:56:15 Using cached django-5.2.17-py3-none-any.whl (8.3 MB) 19:56:15 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 19:56:15 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 19:56:15 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 19:56:15 Using cached gunicorn-26.1.0-py3-none-any.whl (216 kB) 19:56:15 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 19:56:15 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 19:56:15 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 19:56:15 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 19:56:15 Building wheels for collected packages: omero-web 19:56:15 Building wheel for omero-web (pyproject.toml): started 19:56:17 Building wheel for omero-web (pyproject.toml): finished with status 'done' 19:56:17 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820717 sha256=7228c6bae68a24b4a7f67580241e502a1e30d74d3ddb74d3151f9f88a4ab4d1d 19:56:17 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f 19:56:17 Successfully built omero-web 19:56:17 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 19:57:26 19:57:26 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.1.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 19:57:26 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 19:57:26 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 19:57:26 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 19:57:26 --2026-08-19 19:57:26-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 19:57:26 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ... 19:57:26 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 19:57:26 HTTP request sent, awaiting response... 200 OK 19:57:27 Length: 133663 (131K) [text/plain] 19:57:27 Saving to: ‘Figure_To_Pdf.py’ 19:57:27 19:57:27 0K .......... .......... .......... .......... .......... 38% 2.89M 0s 19:57:27 50K .......... .......... .......... .......... .......... 76% 10.2M 0s 19:57:27 100K .......... .......... .......... 100% 2.95M=0.03s 19:57:27 19:57:27 2026-08-19 19:57:27 (4.01 MB/s) - ‘Figure_To_Pdf.py’ saved [133663/133663] 19:57:27 19:57:27 + chmod 755 Figure_To_Pdf.py 19:57:27 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 19:57:27 + omero config set omero.db.name OMERO-server 19:57:34 + omero config set omero.db.host pg 19:57:39 + omero config set omero.db.user postgres 19:57:44 + omero config set omero.data.dir /home/omero/omero-server-data 19:57:50 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 19:57:55 + omero config set omero.db.poolsize 25 19:58:00 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 19:58:05 + omero config set omero.security.trustStorePassword changeit 19:58:10 + omero config set omero.mail.config true 19:58:16 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 19:58:21 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 19:58:26 + omero certificates 19:58:31 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 19:58:31 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 19:58:31 + '[' false = true ']' 19:58:31 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 19:58:31 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 19:58:31 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 19:58:31 2026-08-19 19:58:31,663 [ omego.db] DEBUG dbcommand => upgrade 19:58:31 2026-08-19 19:58:31,663 [ omego.db] DEBUG dbhost => localhost 19:58:31 2026-08-19 19:58:31,663 [ omego.db] DEBUG dbname => OMERO-server 19:58:31 2026-08-19 19:58:31,663 [ omego.db] DEBUG dbpass => omero 19:58:31 2026-08-19 19:58:31,663 [ omego.db] DEBUG dbuser => omero 19:58:31 2026-08-19 19:58:31,663 [ omego.db] DEBUG rootpass => omero 19:58:31 2026-08-19 19:58:31,663 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 19:58:31 2026-08-19 19:58:31,664 [omego.extern] INFO Executing : omero version 19:58:36 OMERO.py version: 19:58:36 OMERO.server version: 19:58:36 5.6.3-655-4199fa2d41-ice36-b52 19:58:36 5.23.1.dev0 19:58:36 2026-08-19 19:58:36,590 [omego.extern] INFO Completed [4.926 s] 19:58:36 2026-08-19 19:58:36,590 [omego.extern] DEBUG Using omero CLI from omero 19:58:36 2026-08-19 19:58:36,590 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 19:58:36 2026-08-19 19:58:36,591 [omego.extern] INFO Running [current environment]: omero config get --show-password 19:58:36 2026-08-19 19:58:36,591 [omego.extern] INFO Executing : omero config get --show-password 19:58:42 2026-08-19 19:58:42,348 [omego.extern] INFO Completed [5.758 s] 19:58:42 2026-08-19 19:58:42,349 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 19:58:42 2026-08-19 19:58:42,349 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 19:58:42 2026-08-19 19:58:42,355 [omego.extern] INFO Completed [0.006 s] 19:58:42 2026-08-19 19:58:42,355 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.15\n' 19:58:42 2026-08-19 19:58:42,356 [ omego.db] INFO psql version: psql (PostgreSQL) 16.15 19:58:42 19:58:42 2026-08-19 19:58:42,356 [omego.extern] INFO Running [current environment]: omero config get --show-password 19:58:42 2026-08-19 19:58:42,356 [omego.extern] INFO Executing : omero config get --show-password 19:58:47 2026-08-19 19:58:47,592 [omego.extern] INFO Completed [5.237 s] 19:58:47 2026-08-19 19:58:47,593 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 19:58:47 2026-08-19 19:58:47,593 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 19:58:47 2026-08-19 19:58:47,617 [omego.extern] INFO Completed [0.024 s] 19:58:47 2026-08-19 19:58:47,617 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n' 19:58:47 2026-08-19 19:58:47,617 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 19:58:47 2026-08-19 19:58:47,617 [omego.extern] INFO Running [current environment]: omero config get --show-password 19:58:47 2026-08-19 19:58:47,617 [omego.extern] INFO Executing : omero config get --show-password 19:58:52 2026-08-19 19:58:52,736 [omego.extern] INFO Completed [5.118 s] 19:58:52 2026-08-19 19:58:52,736 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 19:58:52 2026-08-19 19:58:52,736 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 19:58:52 2026-08-19 19:58:52,866 [omego.extern] INFO Completed [0.130 s] 19:58:52 2026-08-19 19:58:52,866 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 19:58:52 2026-08-19 19:58:52,866 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 19:58:52 2026-08-19 19:58:52,922 [ omego.db] INFO Database is already at OMERO5.4__0 19:58:52 + export LANG=en_US.UTF-8 19:58:52 + LANG=en_US.UTF-8 19:58:52 + export LANGUAGE=en_US:en 19:58:52 + LANGUAGE=en_US:en 19:58:52 + export LC_ALL=en_US.UTF-8 19:58:52 + LC_ALL=en_US.UTF-8 19:58:52 + BUILD_ID=DONT_KILL_ME 19:58:52 + omero admin start 19:59:04 WARNING: lock files in /home/omero/omero-server-data 19:59:04 ---------------------------------------- 19:59:04 /home/omero/omero-server-data/.omero/repository/a3d421b1-9991-42f6-9eb8-867f8e8779af/.lock 19:59:04 ---------------------------------------- 19:59:04 19:59:04 You may want to stop all server processes and remove 19:59:04 these files manually. Lock files can remain after an 19:59:04 abrupt server outage and are especially frequent on 19:59:04 remotely mounted filesystems like NFS. 19:59:04 19:59:04 No descriptor given. Using etc/grid/default.xml 19:59:16 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 19:59:16 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 19:59:16 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 19:59:16 Waiting on startup. Use CTRL-C to exit 19:59:16 + omero admin waitup 19:59:22 Waiting on startup. Use CTRL-C to exit 19:59:23 + omero admin diagnostics 19:59:28 19:59:28 ================================================================================ 19:59:28 OMERO Diagnostics (admin) 19:59:28 ================================================================================ 19:59:28 19:59:28 Commands: java -version 21.0.12 (/usr/bin/java) 19:59:28 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 19:59:28 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 19:59:28 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 19:59:28 Commands: psql --version 16.15 (/usr/bin/psql) 19:59:28 Commands: openssl version 3.5.527 (/usr/bin/openssl) 19:59:28 19:59:28 Component: OMERO.py 5.23.1.dev0 19:59:28 Component: OMERO.server 5.6.3-655-4199fa2d41-ice36-b52 19:59:28 19:59:28 Server: icegridnode running 19:59:28 Server: Blitz-0 active (pid = 3345, enabled) 19:59:28 Server: Indexer-0 active (pid = 3367, enabled) 19:59:28 Server: OMERO.Glacier2 active (pid = 3371, enabled) 19:59:28 Server: OMERO.IceStorm active (pid = 3397, enabled) 19:59:28 Server: Processor-0 activating (enabled) 19:59:28 Server: Tables-0 activating (enabled) 19:59:28 19:59:28 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 19:59:28 Log files: Blitz-0.log 22.7 KB errors=0 warnings=1 19:59:28 Log files: DropBox.log n/a 19:59:28 Log files: FileServer.log n/a 19:59:28 Log files: Indexer-0.log 2.6 KB 19:59:28 Log files: MonitorServer.log n/a 19:59:28 Log files: Processor-0.log 592 B 19:59:28 Log files: Tables-0.log 841 B 19:59:28 Log files: TestDropBox.log n/a 19:59:28 Log files: master.err empty 19:59:28 Log files: master.out 30.5 KB 19:59:28 Log files: Total size 0.06 MB 19:59:28 19:59:28 19:59:28 Environment:OMERO_HOME=(unset) 19:59:28 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 19:59:28 Environment:OMERO_NODE=(unset) 19:59:28 Environment:OMERO_MASTER=(unset) 19:59:28 Environment:OMERO_USERDIR=(unset) 19:59:28 Environment:OMERO_TMPDIR=(unset) 19:59:28 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 19:59:28 Environment:PYTHONPATH=(unset) 19:59:28 Environment:ICE_HOME=/opt/ice-3.6.5 19:59:28 Environment:LD_LIBRARY_PATH=(unset) 19:59:28 Environment:DYLD_LIBRARY_PATH=(unset) 19:59:28 19:59:28 OMERO SSL port:4064 19:59:28 OMERO TCP port:4063 19:59:28 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 19:59:28 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 19:59:28 19:59:28 JVM settings: Blitz-${index} -Xmx7200m 19:59:28 JVM settings: Indexer-${index} -Xmx4800m 19:59:28 JVM settings: PixelData-${index} -Xmx7200m 19:59:28 JVM settings: Repository-${index} -Xmx4800m 19:59:28 19:59:28 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 19:59:28 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 19:59:28 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 19:59:28 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 19:59:28 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 19:59:28 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 19:59:28 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 19:59:28 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 19:59:28 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 19:59:28 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 19:59:28 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 19:59:28 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 19:59:28 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 19:59:28 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 19:59:28 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 19:59:28 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 19:59:29 + deactivate 19:59:29 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 19:59:29 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 19:59:29 + export PATH 19:59:29 + unset _OLD_VIRTUAL_PATH 19:59:29 + '[' -n '' ']' 19:59:29 + hash -r 19:59:29 + '[' -n '' ']' 19:59:29 + unset VIRTUAL_ENV 19:59:29 + unset VIRTUAL_ENV_PROMPT 19:59:29 + '[' '!' '' = nondestructive ']' 19:59:29 + unset -f deactivate 19:59:29 Finished: SUCCESS