01:03:59 Started by upstream project "Trigger" build number 585 01:03:59 originally caused by: 01:03:59 Started by timer 01:03:59 Running as SYSTEM 01:04:00 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 01:04:01 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7105190822062699569.sh 01:04:01 + source /home/settings.env 01:04:01 ++ OMERO_DB_HOST=pg 01:04:01 ++ OMERO_DB_USER=postgres 01:04:01 ++ OMERO_DB_PASS= 01:04:01 ++ OMERO_ROOT_PASS=omero 01:04:01 ++ OMERO_DATA_DIR=/OMERO 01:04:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:04:01 + OMERO_DB_NAME=OMERO-server 01:04:01 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:04:01 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:04:01 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:04:01 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:04:01 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 01:04:01 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:04:01 ++ deactivate nondestructive 01:04:01 ++ '[' -n '' ']' 01:04:01 ++ '[' -n '' ']' 01:04:01 ++ hash -r 01:04:01 ++ '[' -n '' ']' 01:04:01 ++ unset VIRTUAL_ENV 01:04:01 ++ unset VIRTUAL_ENV_PROMPT 01:04:01 ++ '[' '!' nondestructive = nondestructive ']' 01:04:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:04:01 ++ export VIRTUAL_ENV 01:04:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:04:01 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:04:01 ++ export PATH 01:04:01 ++ '[' -n '' ']' 01:04:01 ++ '[' -z '' ']' 01:04:01 ++ _OLD_VIRTUAL_PS1= 01:04:01 ++ PS1='(.venv3) ' 01:04:01 ++ export PS1 01:04:01 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:04:01 ++ export VIRTUAL_ENV_PROMPT 01:04:01 ++ hash -r 01:04:01 + omero admin stop 01:04:37 Server not running 01:04:38 + echo not running 01:04:38 not running 01:04:38 + sleep 5 01:04:43 + deactivate 01:04:43 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:04:43 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:04:43 + export PATH 01:04:43 + unset _OLD_VIRTUAL_PATH 01:04:43 + '[' -n '' ']' 01:04:43 + hash -r 01:04:43 + '[' -n '' ']' 01:04:43 + unset VIRTUAL_ENV 01:04:43 + unset VIRTUAL_ENV_PROMPT 01:04:43 + '[' '!' '' = nondestructive ']' 01:04:43 + unset -f deactivate 01:04:43 + rm -rf /home/omero/workspace/OMERO-server/.venv3 01:04:44 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 01:04:50 + '[' false = true ']' 01:04:50 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 01:04:50 Skipping PURGE_DATA:CleanDbAndRepo 01:04:50 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 01:04:52 Copied 1 artifact from "OMERO-build" build number 493 01:04:52 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 486 01:04:52 Copied 2 artifacts from "OMERO-build-build" build number 520 01:04:52 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 26 01:04:52 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3539922221690363800.sh 01:04:52 + source /home/settings.env 01:04:52 ++ OMERO_DB_HOST=pg 01:04:52 ++ OMERO_DB_USER=postgres 01:04:52 ++ OMERO_DB_PASS= 01:04:52 ++ OMERO_ROOT_PASS=omero 01:04:52 ++ OMERO_DATA_DIR=/OMERO 01:04:52 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:04:52 + OMERO_DB_NAME=OMERO-server 01:04:52 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:04:52 + mkdir -p /home/omero/omero-server-data 01:04:52 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:04:52 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:04:52 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:04:52 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:04:52 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:04:52 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:04:52 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:04:52 ++ ls OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493.zip 01:04:52 + ZIP=OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493.zip 01:04:52 + '[' '!' -z '' ']' 01:04:52 + DIST=OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493 01:04:52 + unzip OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493.zip 01:04:52 Archive: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493.zip 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/blitz/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/grid/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/profiles/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/error/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/grid/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/luts/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/luts/janelia/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/luts/matplotlib/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/luts/ncsa_paledit/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/luts/seaborn/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/luts/wcif/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/omero/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/omero/analysis_scripts/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/omero/annotation_scripts/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/omero/export_scripts/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/omero/figure_scripts/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/omero/import_scripts/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/scripts/omero/util_scripts/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/server/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/share/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/share/licenses/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/misc/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__1/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__10/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__11/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__2/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__3/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__4/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__5/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__6/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__7/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__8/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__9/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3__4/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3__5/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3__6/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3__7/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.1__0/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.2__0/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.2__0/t/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.3__0/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.4__0/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4__0/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.0__0/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.1__1/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.2__0/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.3__0/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4DEV__1/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4DEV__2/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4DEV__3/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/ 01:04:52 creating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/var/ 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/LICENSE.txt 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/backup.cfg 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/blitz/mail-senders.example 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/blitz/mail-server.example 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/build.properties 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/env.bat 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/env.sh 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/hibernate.properties 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/ice.config 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/logback-cli.xml 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/logback-indexing-cli.xml 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/logback-indexing.xml 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/logback.xml 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/mime.types 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/node1.cfg 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/node2.cfg 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/omero.properties 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/profiles/psql 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/rollover.cfg 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/Windows.cfg 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/error/maintainance.html 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/grid/README 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/grid/default.xml 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/grid/templates.xml 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/grid/windefault.xml 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/ice.config 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/internal.cfg 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/master.cfg 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/templates/robot.template 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/etc/testdropbox.config 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/history.rst 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/OMEZarrReader.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/accessors-smart.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/activation.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/aggdesigner-algorithm.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/aircompressor.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/antlr.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/aopalliance.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/apiguardian-api.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/asm.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/avatica-core.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/avatica-metrics.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/aws-java-sdk-core.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/aws-java-sdk-kms.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/aws-java-sdk-s3.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/base.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-anim.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-awt-util.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-bridge.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-codec.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-constants.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-css.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-dom.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-ext.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-gvt.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-i18n.jar 01:04:52 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/lib/client/batik-parser.jar 01:04:52 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OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/misc/enums.py 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__1/OMERO3__7.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__10/OMERO3A__9.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__11/OMERO3A__10.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__11/OMERO3A__5.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__2/OMERO3A__1.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__3/OMERO3A__2.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__3/OMERO3__5.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__4/OMERO3A__3.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__4/OMERO3__5.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__5/OMERO3A__4.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__6/OMERO3A__5.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__7/OMERO3A__6.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__8/OMERO3A__6.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3A__9/OMERO3A__8.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3__4/OMERO3__1.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3__5/OMERO3__4.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3__6/OMERO3__5.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO3__7/OMERO3__6.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.1__0/OMERO4__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO4__0/OMERO3A__11.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/psql-footer.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/psql-header.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/schema.sql 01:04:54 inflating: OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493/sql/psql/OMERO5.4__0/views.sql 01:04:54 + rm -f OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493.zip 01:04:54 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-574-1aaa45bda9-ice36-b493 /home/omero/workspace/OMERO-server/OMERO.server 01:04:54 ++ ls omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar 01:04:54 + JAR=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar 01:04:54 ++ basename omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar 01:04:54 + JAR_NAME=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar 01:04:54 + mv /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar 01:04:54 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar 01:04:55 --2025-08-13 01:04:55-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar 01:04:55 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 01:04:56 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. 01:04:56 HTTP request sent, awaiting response... 200 OK 01:04:56 Length: 889211 (868K) [application/java-archive] 01:04:56 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ 01:04:56 01:04:56 0K .......... .......... .......... .......... .......... 5% 3.52M 0s 01:04:56 50K .......... .......... .......... .......... .......... 11% 10.6M 0s 01:04:56 100K .......... .......... .......... .......... .......... 17% 8.23M 0s 01:04:56 150K .......... .......... .......... .......... .......... 23% 19.4M 0s 01:04:56 200K .......... .......... .......... .......... .......... 28% 8.58M 0s 01:04:56 250K .......... .......... .......... .......... .......... 34% 28.0M 0s 01:04:56 300K .......... .......... .......... .......... .......... 40% 45.1M 0s 01:04:56 350K .......... .......... .......... .......... .......... 46% 31.1M 0s 01:04:56 400K .......... .......... .......... .......... .......... 51% 27.6M 0s 01:04:56 450K .......... .......... .......... .......... .......... 57% 10.1M 0s 01:04:56 500K .......... .......... .......... .......... .......... 63% 20.3M 0s 01:04:56 550K .......... .......... .......... .......... .......... 69% 153M 0s 01:04:56 600K .......... .......... .......... .......... .......... 74% 36.4M 0s 01:04:56 650K .......... .......... .......... .......... .......... 80% 23.6M 0s 01:04:56 700K .......... .......... .......... .......... .......... 86% 9.12M 0s 01:04:56 750K .......... .......... .......... .......... .......... 92% 32.7M 0s 01:04:56 800K .......... .......... .......... .......... .......... 97% 149M 0s 01:04:56 850K .......... ........ 100% 14.0M=0.06s 01:04:56 01:04:56 2025-08-13 01:04:56 (14.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211] 01:04:56 01:04:56 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar 01:04:56 --2025-08-13 01:04:56-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar 01:04:56 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 01:04:56 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. 01:04:56 HTTP request sent, awaiting response... 200 OK 01:04:56 Length: 73309 (72K) [application/java-archive] 01:04:56 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ 01:04:56 01:04:56 0K .......... .......... .......... .......... .......... 69% 3.71M 0s 01:04:56 50K .......... .......... . 100% 25.0M=0.01s 01:04:56 01:04:56 2025-08-13 01:04:56 (5.00 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309] 01:04:56 01:04:56 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar 01:04:56 --2025-08-13 01:04:56-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar 01:04:56 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 01:04:56 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. 01:04:56 HTTP request sent, awaiting response... 200 OK 01:04:56 Length: 63303 (62K) [application/java-archive] 01:04:56 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ 01:04:56 01:04:56 0K .......... .......... .......... .......... .......... 80% 3.92M 0s 01:04:56 50K .......... . 100% 11.9M=0.01s 01:04:56 01:04:56 2025-08-13 01:04:56 (4.50 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303] 01:04:56 01:04:56 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar 01:04:56 --2025-08-13 01:04:56-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar 01:04:56 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 01:04:56 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. 01:04:56 HTTP request sent, awaiting response... 200 OK 01:04:56 Length: 1271272 (1.2M) [application/java-archive] 01:04:56 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ 01:04:56 01:04:56 0K .......... .......... .......... .......... .......... 4% 4.16M 0s 01:04:56 50K .......... .......... .......... .......... .......... 8% 5.26M 0s 01:04:56 100K .......... .......... .......... .......... .......... 12% 21.7M 0s 01:04:56 150K .......... .......... .......... .......... .......... 16% 19.9M 0s 01:04:56 200K .......... .......... .......... .......... .......... 20% 8.32M 0s 01:04:56 250K .......... .......... .......... .......... .......... 24% 37.7M 0s 01:04:56 300K .......... .......... .......... .......... .......... 28% 17.5M 0s 01:04:56 350K .......... .......... .......... .......... .......... 32% 99.7M 0s 01:04:56 400K .......... .......... .......... .......... .......... 36% 35.2M 0s 01:04:56 450K .......... .......... .......... .......... .......... 40% 8.96M 0s 01:04:56 500K .......... .......... .......... .......... .......... 44% 29.8M 0s 01:04:56 550K .......... .......... .......... .......... .......... 48% 33.2M 0s 01:04:56 600K .......... .......... .......... .......... .......... 52% 47.3M 0s 01:04:56 650K .......... .......... .......... .......... .......... 56% 39.2M 0s 01:04:56 700K .......... .......... .......... .......... .......... 60% 8.95M 0s 01:04:56 750K .......... .......... .......... .......... .......... 64% 32.5M 0s 01:04:56 800K .......... .......... .......... .......... .......... 68% 26.7M 0s 01:04:56 850K .......... .......... .......... .......... .......... 72% 109M 0s 01:04:56 900K .......... .......... .......... .......... .......... 76% 29.8M 0s 01:04:56 950K .......... .......... .......... .......... .......... 80% 9.63M 0s 01:04:56 1000K .......... .......... .......... .......... .......... 84% 30.4M 0s 01:04:56 1050K .......... .......... .......... .......... .......... 88% 145M 0s 01:04:56 1100K .......... .......... .......... .......... .......... 92% 24.3M 0s 01:04:56 1150K .......... .......... .......... .......... .......... 96% 29.7M 0s 01:04:56 1200K .......... .......... .......... .......... . 100% 10.5M=0.07s 01:04:56 01:04:56 2025-08-13 01:04:56 (16.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272] 01:04:56 01:04:56 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:04:56 ++ deactivate nondestructive 01:04:56 ++ '[' -n '' ']' 01:04:56 ++ '[' -n '' ']' 01:04:56 ++ hash -r 01:04:56 ++ '[' -n '' ']' 01:04:56 ++ unset VIRTUAL_ENV 01:04:56 ++ unset VIRTUAL_ENV_PROMPT 01:04:56 ++ '[' '!' nondestructive = nondestructive ']' 01:04:56 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:04:56 ++ export VIRTUAL_ENV 01:04:56 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:04:56 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:04:56 ++ export PATH 01:04:56 ++ '[' -n '' ']' 01:04:56 ++ '[' -z '' ']' 01:04:56 ++ _OLD_VIRTUAL_PS1= 01:04:56 ++ PS1='(.venv3) ' 01:04:56 ++ export PS1 01:04:56 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:04:56 ++ export VIRTUAL_ENV_PROMPT 01:04:56 ++ hash -r 01:04:56 + pip install -U pip 01:04:57 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 01:04:58 Collecting pip 01:04:58 Using cached pip-25.2-py3-none-any.whl (1.8 MB) 01:04:58 Installing collected packages: pip 01:04:58 Attempting uninstall: pip 01:04:58 Found existing installation: pip 22.3.1 01:04:58 Uninstalling pip-22.3.1: 01:04:58 Successfully uninstalled pip-22.3.1 01:04:59 Successfully installed pip-25.2 01:04:59 WARNING: There was an error checking the latest version of pip. 01:04:59 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:05:00 Collecting zeroc-ice==3.6.5 01:05:00 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:05:02 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 22.1 MB/s 0:00:01 01:05:02 Installing collected packages: zeroc-ice 01:05:03 Successfully installed zeroc-ice-3.6.5 01:05:03 + pip install markdown 01:05:03 Collecting markdown 01:05:03 Using cached markdown-3.8.2-py3-none-any.whl.metadata (5.1 kB) 01:05:03 Using cached markdown-3.8.2-py3-none-any.whl (106 kB) 01:05:03 Installing collected packages: markdown 01:05:03 Successfully installed markdown-3.8.2 01:05:03 + pip install reportlab 01:05:04 Collecting reportlab 01:05:04 Using cached reportlab-4.4.3-py3-none-any.whl.metadata (1.7 kB) 01:05:04 Collecting pillow>=9.0.0 (from reportlab) 01:05:04 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 01:05:04 Collecting charset-normalizer (from reportlab) 01:05:04 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (36 kB) 01:05:04 Using cached reportlab-4.4.3-py3-none-any.whl (2.0 MB) 01:05:05 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) 01:05:05 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) 01:05:05 Installing collected packages: pillow, charset-normalizer, reportlab 01:05:06 01:05:06 Successfully installed charset-normalizer-3.4.3 pillow-11.3.0 reportlab-4.4.3 01:05:06 + pip install pyarrow 01:05:06 Collecting pyarrow 01:05:06 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB) 01:05:06 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.8 MB) 01:05:07 Installing collected packages: pyarrow 01:05:08 Successfully installed pyarrow-21.0.0 01:05:08 + pip install omego 01:05:09 Collecting omego 01:05:09 Using cached omego-0.7.0-py3-none-any.whl 01:05:09 Collecting future (from omego) 01:05:09 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 01:05:09 Collecting yaclifw>=0.1.1 (from omego) 01:05:09 Using cached yaclifw-0.2.0-py3-none-any.whl 01:05:09 Collecting six (from yaclifw>=0.1.1->omego) 01:05:09 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 01:05:09 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:05:09 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 01:05:09 Installing collected packages: six, future, yaclifw, omego 01:05:10 01:05:10 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 01:05:10 + pip install tables 01:05:10 Collecting tables 01:05:10 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) 01:05:10 Collecting numpy>=1.20.0 (from tables) 01:05:10 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB) 01:05:11 Collecting numexpr>=2.6.2 (from tables) 01:05:11 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 01:05:11 Collecting packaging (from tables) 01:05:11 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB) 01:05:11 Collecting py-cpuinfo (from tables) 01:05:11 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 01:05:11 Collecting blosc2>=2.3.0 (from tables) 01:05:11 Downloading blosc2-3.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB) 01:05:11 Collecting typing-extensions>=4.4.0 (from tables) 01:05:11 Using cached typing_extensions-4.14.1-py3-none-any.whl.metadata (3.0 kB) 01:05:11 Collecting ndindex (from blosc2>=2.3.0->tables) 01:05:11 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB) 01:05:12 Collecting msgpack (from blosc2>=2.3.0->tables) 01:05:12 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 01:05:12 Collecting platformdirs (from blosc2>=2.3.0->tables) 01:05:12 Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB) 01:05:12 Collecting requests (from blosc2>=2.3.0->tables) 01:05:12 Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB) 01:05:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.3) 01:05:12 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 01:05:12 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) 01:05:12 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) 01:05:12 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB) 01:05:12 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) 01:05:12 Using cached certifi-2025.8.3-py3-none-any.whl.metadata (2.4 kB) 01:05:12 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 01:05:12 Downloading blosc2-3.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB) 01:05:12 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 22.2 MB/s 0:00:00 01:05:12 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB) 01:05:12 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 01:05:13 Using cached typing_extensions-4.14.1-py3-none-any.whl (43 kB) 01:05:13 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (429 kB) 01:05:13 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB) 01:05:13 Using cached packaging-25.0-py3-none-any.whl (66 kB) 01:05:13 Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB) 01:05:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 01:05:13 Using cached requests-2.32.4-py3-none-any.whl (64 kB) 01:05:13 Using cached idna-3.10-py3-none-any.whl (70 kB) 01:05:13 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB) 01:05:13 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB) 01:05:13 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables 01:05:17 01:05:17 Successfully installed blosc2-3.7.0 certifi-2025.8.3 idna-3.10 msgpack-1.1.1 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.2 packaging-25.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.1 urllib3-2.5.0 01:05:17 + pip install jinja2 01:05:17 Collecting jinja2 01:05:17 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 01:05:17 Collecting MarkupSafe>=2.0 (from jinja2) 01:05:17 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) 01:05:17 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 01:05:17 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) 01:05:17 Installing collected packages: MarkupSafe, jinja2 01:05:17 01:05:17 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6 01:05:17 + pip install zarr 01:05:18 Collecting zarr 01:05:18 Using cached zarr-3.1.1-py3-none-any.whl.metadata (10 kB) 01:05:18 Collecting donfig>=0.8 (from zarr) 01:05:18 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 01:05:18 Collecting numcodecs>=0.14 (from numcodecs[crc32c]>=0.14->zarr) 01:05:18 Using cached numcodecs-0.16.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.3 kB) 01:05:18 Requirement already satisfied: numpy>=1.26 in ./.venv3/lib64/python3.11/site-packages (from zarr) (2.3.2) 01:05:18 Requirement already satisfied: packaging>=22.0 in ./.venv3/lib64/python3.11/site-packages (from zarr) (25.0) 01:05:18 Requirement already satisfied: typing-extensions>=4.9 in ./.venv3/lib64/python3.11/site-packages (from zarr) (4.14.1) 01:05:19 Collecting pyyaml (from donfig>=0.8->zarr) 01:05:19 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 01:05:19 Collecting crc32c>=2.7 (from numcodecs[crc32c]>=0.14->zarr) 01:05:19 Using cached crc32c-2.7.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) 01:05:19 Using cached zarr-3.1.1-py3-none-any.whl (255 kB) 01:05:19 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 01:05:19 Using cached numcodecs-0.16.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.8 MB) 01:05:19 Using cached crc32c-2.7.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (53 kB) 01:05:19 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 01:05:19 Installing collected packages: pyyaml, numcodecs, crc32c, donfig, zarr 01:05:20 01:05:20 Successfully installed crc32c-2.7.1 donfig-0.8.1.post1 numcodecs-0.16.1 pyyaml-6.0.2 zarr-3.1.1 01:05:20 + pip install fsspec requests aiohttp s3fs 01:05:21 Collecting fsspec 01:05:21 Using cached fsspec-2025.7.0-py3-none-any.whl.metadata (12 kB) 01:05:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (2.32.4) 01:05:21 Collecting aiohttp 01:05:21 Using cached aiohttp-3.12.15-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) 01:05:21 Collecting s3fs 01:05:22 Using cached s3fs-2025.7.0-py3-none-any.whl.metadata (1.4 kB) 01:05:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests) (3.4.3) 01:05:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests) (3.10) 01:05:22 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests) (2.5.0) 01:05:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests) (2025.8.3) 01:05:22 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp) 01:05:22 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB) 01:05:22 Collecting aiosignal>=1.4.0 (from aiohttp) 01:05:22 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 01:05:22 Collecting attrs>=17.3.0 (from aiohttp) 01:05:22 Using cached attrs-25.3.0-py3-none-any.whl.metadata (10 kB) 01:05:22 Collecting frozenlist>=1.1.1 (from aiohttp) 01:05:22 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB) 01:05:22 Collecting multidict<7.0,>=4.5 (from aiohttp) 01:05:22 Using cached multidict-6.6.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 01:05:22 Collecting propcache>=0.2.0 (from aiohttp) 01:05:22 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB) 01:05:23 Collecting yarl<2.0,>=1.17.0 (from aiohttp) 01:05:23 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (73 kB) 01:05:23 Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs) 01:05:23 Using cached aiobotocore-2.24.0-py3-none-any.whl.metadata (25 kB) 01:05:23 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 01:05:23 Using cached aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB) 01:05:24 Collecting botocore<1.39.12,>=1.39.9 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 01:05:24 Using cached botocore-1.39.11-py3-none-any.whl.metadata (5.7 kB) 01:05:24 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 01:05:24 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 01:05:24 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 01:05:24 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB) 01:05:24 Collecting wrapt<2.0.0,>=1.10.10 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 01:05:24 Downloading wrapt-1.17.3-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (6.4 kB) 01:05:24 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<3.0.0,>=2.5.4->s3fs) (1.17.0) 01:05:24 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp) (4.14.1) 01:05:24 Using cached fsspec-2025.7.0-py3-none-any.whl (199 kB) 01:05:24 Using cached aiohttp-3.12.15-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB) 01:05:24 Using cached multidict-6.6.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 01:05:25 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (348 kB) 01:05:25 Using cached s3fs-2025.7.0-py3-none-any.whl (30 kB) 01:05:25 Using cached aiobotocore-2.24.0-py3-none-any.whl (84 kB) 01:05:25 Using cached aioitertools-0.12.0-py3-none-any.whl (24 kB) 01:05:25 Using cached botocore-1.39.11-py3-none-any.whl (13.9 MB) 01:05:25 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) 01:05:25 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 01:05:25 Downloading wrapt-1.17.3-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (82 kB) 01:05:26 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB) 01:05:26 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 01:05:26 Using cached attrs-25.3.0-py3-none-any.whl (63 kB) 01:05:26 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (235 kB) 01:05:26 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (213 kB) 01:05:26 Installing collected packages: wrapt, python-dateutil, propcache, multidict, jmespath, fsspec, frozenlist, attrs, aioitertools, aiohappyeyeballs, yarl, botocore, aiosignal, aiohttp, aiobotocore, s3fs 01:05:28 01:05:28 Successfully installed aiobotocore-2.24.0 aiohappyeyeballs-2.6.1 aiohttp-3.12.15 aioitertools-0.12.0 aiosignal-1.4.0 attrs-25.3.0 botocore-1.39.11 frozenlist-1.7.0 fsspec-2025.7.0 jmespath-1.0.1 multidict-6.6.4 propcache-0.3.2 python-dateutil-2.9.0.post0 s3fs-2025.7.0 wrapt-1.17.3 yarl-1.20.1 01:05:29 + pip install omero-py 01:05:29 Collecting omero-py 01:05:29 Using cached omero_py-5.21.0-py3-none-any.whl.metadata (6.5 kB) 01:05:29 Collecting urllib3<2 (from omero-py) 01:05:29 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 01:05:29 Collecting appdirs (from omero-py) 01:05:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 01:05:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 01:05:29 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.2) 01:05:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.3.0) 01:05:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py) (6.0.2) 01:05:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:05:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.4) 01:05:29 Collecting portalocker (from omero-py) 01:05:29 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 01:05:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.3) 01:05:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10) 01:05:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.8.3) 01:05:29 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB) 01:05:30 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 01:05:30 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:05:30 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 01:05:30 Installing collected packages: appdirs, urllib3, portalocker, omero-py 01:05:30 Attempting uninstall: urllib3 01:05:30 Found existing installation: urllib3 2.5.0 01:05:30 Uninstalling urllib3-2.5.0: 01:05:30 Successfully uninstalled urllib3-2.5.0 01:05:32 01:05:32 Successfully installed appdirs-1.4.4 omero-py-5.21.0 portalocker-3.2.0 urllib3-1.26.20 01:05:32 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 01:05:32 Collecting omero-metadata 01:05:32 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-jr_n6khb/omero-metadata_c3a6fab4ae634fc6b5f621a58f196721 01:05:32 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-jr_n6khb/omero-metadata_c3a6fab4ae634fc6b5f621a58f196721 01:05:34 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit c8bdab8d83dc4fcc7a20cee930d4518c1ad6dc4d 01:05:34 Installing build dependencies: started 01:05:35 Installing build dependencies: finished with status 'done' 01:05:35 Getting requirements to build wheel: started 01:05:36 Getting requirements to build wheel: finished with status 'done' 01:05:36 Preparing metadata (pyproject.toml): started 01:05:36 Preparing metadata (pyproject.toml): finished with status 'done' 01:05:36 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.0) 01:05:36 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2) 01:05:36 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 01:05:36 Collecting pandas (from omero-metadata) 01:05:36 Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (91 kB) 01:05:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 01:05:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 01:05:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 01:05:36 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.2) 01:05:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.3.0) 01:05:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 01:05:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.4) 01:05:36 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) 01:05:36 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2) 01:05:36 Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0) 01:05:36 Collecting pytz>=2020.1 (from pandas->omero-metadata) 01:05:36 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) 01:05:36 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 01:05:36 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB) 01:05:36 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 01:05:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.3) 01:05:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) 01:05:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.8.3) 01:05:36 Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB) 01:05:36 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) 01:05:37 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB) 01:05:37 Building wheels for collected packages: omero-metadata 01:05:37 Building wheel for omero-metadata (pyproject.toml): started 01:05:37 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 01:05:37 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=fc6af5240c690b1566166ad53ae1e57e1ad0603b3d202c95334c7c634ae125f1 01:05:37 Stored in directory: /tmp/pip-ephem-wheel-cache-dp1ekruk/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 01:05:37 Successfully built omero-metadata 01:05:37 Installing collected packages: pytz, tzdata, pandas, omero-metadata 01:05:42 01:05:42 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.1 pytz-2025.2 tzdata-2025.2 01:05:42 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 01:05:42 Collecting omero-cli-render 01:05:42 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-n0s72gic/omero-cli-render_9c0ac8b6df744df0a45ff21e14160c45 01:05:42 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-n0s72gic/omero-cli-render_9c0ac8b6df744df0a45ff21e14160c45 01:05:43 Running command git checkout -b merge_ci --track origin/merge_ci 01:05:44 Switched to a new branch 'merge_ci' 01:05:44 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:05:44 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 187ca5653fc5d9d69c6a496960648f5bc997f7d6 01:05:44 Installing build dependencies: started 01:05:44 Installing build dependencies: finished with status 'done' 01:05:44 Getting requirements to build wheel: started 01:05:45 Getting requirements to build wheel: finished with status 'done' 01:05:45 Preparing metadata (pyproject.toml): started 01:05:45 Preparing metadata (pyproject.toml): finished with status 'done' 01:05:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2) 01:05:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.0) 01:05:45 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 01:05:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 01:05:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 01:05:45 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.2) 01:05:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.3.0) 01:05:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 01:05:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.4) 01:05:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) 01:05:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.3) 01:05:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) 01:05:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.8.3) 01:05:45 Building wheels for collected packages: omero-cli-render 01:05:45 Building wheel for omero-cli-render (pyproject.toml): started 01:05:45 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 01:05:45 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=e492787a345131e9bc623519377ab837c208b66e1342b79e9fc686cf774da28b 01:05:45 Stored in directory: /tmp/pip-ephem-wheel-cache-4xzoy18a/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 01:05:45 Successfully built omero-cli-render 01:05:45 Installing collected packages: omero-cli-render 01:05:45 Successfully installed omero-cli-render-0.8.2.dev0 01:05:45 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 01:05:46 Collecting omero-cli-duplicate 01:05:46 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-8078eymh/omero-cli-duplicate_c5e1f69002b94fd4abaced8e4946245a 01:05:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-8078eymh/omero-cli-duplicate_c5e1f69002b94fd4abaced8e4946245a 01:05:47 Running command git checkout -b merge_ci --track origin/merge_ci 01:05:47 Switched to a new branch 'merge_ci' 01:05:47 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:05:47 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 93e6236f08322c2c38e810c5700f927cbe44ba6c 01:05:47 Installing build dependencies: started 01:05:48 Installing build dependencies: finished with status 'done' 01:05:48 Getting requirements to build wheel: started 01:05:48 Getting requirements to build wheel: finished with status 'done' 01:05:48 Preparing metadata (pyproject.toml): started 01:05:48 Preparing metadata (pyproject.toml): finished with status 'done' 01:05:48 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.0) 01:05:48 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 01:05:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 01:05:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 01:05:48 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.2) 01:05:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.3.0) 01:05:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 01:05:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 01:05:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.4) 01:05:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 01:05:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.3) 01:05:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) 01:05:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.8.3) 01:05:48 Building wheels for collected packages: omero-cli-duplicate 01:05:48 Building wheel for omero-cli-duplicate (pyproject.toml): started 01:05:49 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 01:05:49 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=18fd0e7e7ddbb0359b4ff72e046b1efa36f899a28aa753c4e58b9487bcfc98dd 01:05:49 Stored in directory: /tmp/pip-ephem-wheel-cache-9hgq_w7s/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 01:05:49 Successfully built omero-cli-duplicate 01:05:49 Installing collected packages: omero-cli-duplicate 01:05:49 Successfully installed omero-cli-duplicate-0.4.1.dev0 01:05:49 + pip install omero-certificates 01:05:49 Collecting omero-certificates 01:05:49 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 01:05:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.0) 01:05:49 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 01:05:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 01:05:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 01:05:49 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.2) 01:05:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.3.0) 01:05:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 01:05:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 01:05:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.4) 01:05:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 01:05:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.3) 01:05:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) 01:05:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.8.3) 01:05:49 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 01:05:50 Installing collected packages: omero-certificates 01:05:50 Successfully installed omero-certificates-0.4.0 01:05:50 + for x in *.tar.gz 01:05:50 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 01:05:50 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 01:05:50 Installing build dependencies: started 01:05:51 Installing build dependencies: finished with status 'done' 01:05:51 Getting requirements to build wheel: started 01:05:51 Getting requirements to build wheel: finished with status 'done' 01:05:51 Preparing metadata (pyproject.toml): started 01:05:51 Preparing metadata (pyproject.toml): finished with status 'done' 01:05:51 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.0) 01:05:51 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 01:05:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 01:05:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 01:05:51 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.2) 01:05:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.3.0) 01:05:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 01:05:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 01:05:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4) 01:05:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 01:05:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.3) 01:05:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) 01:05:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.8.3) 01:05:51 Building wheels for collected packages: omero-dropbox 01:05:51 Building wheel for omero-dropbox (pyproject.toml): started 01:05:52 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 01:05:52 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=85f4270cfbdd99668dd6783b25797525ee786938a0df6070f01c9e480b4ff371 01:05:52 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 01:05:52 Successfully built omero-dropbox 01:05:52 Installing collected packages: omero-dropbox 01:05:52 Successfully installed omero-dropbox-5.7.1.dev0 01:05:52 + for x in *.tar.gz 01:05:52 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 01:05:52 Processing ./omero_marshal-0.9.1.dev0.tar.gz 01:05:52 Installing build dependencies: started 01:05:53 Installing build dependencies: finished with status 'done' 01:05:53 Getting requirements to build wheel: started 01:05:54 Getting requirements to build wheel: finished with status 'done' 01:05:54 Preparing metadata (pyproject.toml): started 01:05:54 Preparing metadata (pyproject.toml): finished with status 'done' 01:05:54 Building wheels for collected packages: omero_marshal 01:05:54 Building wheel for omero_marshal (pyproject.toml): started 01:05:54 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 01:05:54 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=e2573d37c84e5739707203e30da5aae95efdde85e8ff0b4c6e41ed6a8ebc6dbd 01:05:54 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18 01:05:54 Successfully built omero_marshal 01:05:54 Installing collected packages: omero_marshal 01:05:55 Successfully installed omero_marshal-0.9.1.dev0 01:05:55 + for x in *.tar.gz 01:05:55 + pip install -U omero_py-5.21.1.dev0.tar.gz 01:05:55 Processing ./omero_py-5.21.1.dev0.tar.gz 01:05:55 Installing build dependencies: started 01:05:56 Installing build dependencies: finished with status 'done' 01:05:56 Getting requirements to build wheel: started 01:05:57 Getting requirements to build wheel: finished with status 'done' 01:05:57 Preparing metadata (pyproject.toml): started 01:05:57 Preparing metadata (pyproject.toml): finished with status 'done' 01:05:57 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.26.20) 01:05:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.4.4) 01:05:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.0.0) 01:05:57 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.3.2) 01:05:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (11.3.0) 01:05:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (6.0.2) 01:05:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.6.5) 01:05:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.32.4) 01:05:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.2.0) 01:05:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.4.3) 01:05:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.10) 01:05:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (2025.8.3) 01:05:57 Building wheels for collected packages: omero-py 01:05:57 Building wheel for omero-py (pyproject.toml): started 01:05:58 Building wheel for omero-py (pyproject.toml): finished with status 'done' 01:05:58 Created wheel for omero-py: filename=omero_py-5.21.1.dev0-py3-none-any.whl size=2783541 sha256=5403d14fdab9b950f4786a16b596884e588287269d746c3121b10587b5ecb107 01:05:58 Stored in directory: /home/omero/.cache/pip/wheels/32/8a/68/256ffa196397e2ec55e537fc96a9b9c4178b3eab623cd87f3d 01:05:58 Successfully built omero-py 01:05:58 Installing collected packages: omero-py 01:05:58 Attempting uninstall: omero-py 01:05:58 Found existing installation: omero-py 5.21.0 01:05:58 Uninstalling omero-py-5.21.0: 01:05:59 Successfully uninstalled omero-py-5.21.0 01:06:01 Successfully installed omero-py-5.21.1.dev0 01:06:01 + for x in *.tar.gz 01:06:01 + pip install -U omero_scripts-5.9.2.dev0.tar.gz 01:06:01 Processing ./omero_scripts-5.9.2.dev0.tar.gz 01:06:01 Installing build dependencies: started 01:06:02 Installing build dependencies: finished with status 'done' 01:06:02 Getting requirements to build wheel: started 01:06:02 Getting requirements to build wheel: finished with status 'done' 01:06:02 Preparing metadata (pyproject.toml): started 01:06:03 Preparing metadata (pyproject.toml): finished with status 'done' 01:06:03 Building wheels for collected packages: omero-scripts 01:06:03 Building wheel for omero-scripts (pyproject.toml): started 01:06:03 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 01:06:03 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136847 sha256=f178b7be6460f41a318d22cf399ad6cbff98936aa099625407a2d52917533553 01:06:03 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850 01:06:03 Successfully built omero-scripts 01:06:03 Installing collected packages: omero-scripts 01:06:03 Successfully installed omero-scripts-5.9.2.dev0 01:06:03 + for x in *.tar.gz 01:06:03 + pip install -U omero_web-5.29.2.dev0.tar.gz 01:06:03 Processing ./omero_web-5.29.2.dev0.tar.gz 01:06:04 Installing build dependencies: started 01:06:05 Installing build dependencies: finished with status 'done' 01:06:05 Getting requirements to build wheel: started 01:06:05 Getting requirements to build wheel: finished with status 'done' 01:06:05 Preparing metadata (pyproject.toml): started 01:06:05 Preparing metadata (pyproject.toml): finished with status 'done' 01:06:05 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (5.21.1.dev0) 01:06:05 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.2.dev0) 01:06:05 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) 01:06:06 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.2.dev0) 01:06:06 Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB) 01:06:06 Collecting django-pipeline (from omero-web==5.29.2.dev0) 01:06:06 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB) 01:06:06 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.2.dev0) 01:06:06 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 01:06:06 Collecting django-csp (from omero-web==5.29.2.dev0) 01:06:06 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB) 01:06:06 Collecting whitenoise>=5.3.0 (from omero-web==5.29.2.dev0) 01:06:06 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB) 01:06:06 Collecting gunicorn>=19.3 (from omero-web==5.29.2.dev0) 01:06:06 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 01:06:06 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (0.9.1.dev0) 01:06:06 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (11.3.0) 01:06:06 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (2025.2) 01:06:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (3.2.0) 01:06:06 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (25.0) 01:06:06 Collecting importlib-resources (from omero-web==5.29.2.dev0) 01:06:06 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 01:06:06 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0) 01:06:06 Using cached asgiref-3.9.1-py3-none-any.whl.metadata (9.3 kB) 01:06:06 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0) 01:06:06 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) 01:06:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.26.20) 01:06:06 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.4.4) 01:06:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.0.0) 01:06:06 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.3.2) 01:06:06 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (6.0.2) 01:06:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.6.5) 01:06:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.32.4) 01:06:06 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.2.dev0) (65.5.1) 01:06:06 Collecting wheel (from django-pipeline->omero-web==5.29.2.dev0) 01:06:06 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 01:06:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.4.3) 01:06:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.10) 01:06:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (2025.8.3) 01:06:06 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 01:06:06 Using cached django-4.2.23-py3-none-any.whl (8.0 MB) 01:06:07 Using cached asgiref-3.9.1-py3-none-any.whl (23 kB) 01:06:07 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) 01:06:07 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 01:06:07 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) 01:06:07 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB) 01:06:07 Using cached django_csp-4.0-py3-none-any.whl (25 kB) 01:06:07 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB) 01:06:07 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 01:06:07 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 01:06:07 Building wheels for collected packages: omero-web 01:06:07 Building wheel for omero-web (pyproject.toml): started 01:06:08 Building wheel for omero-web (pyproject.toml): finished with status 'done' 01:06:08 Created wheel for omero-web: filename=omero_web-5.29.2.dev0-py3-none-any.whl size=2817943 sha256=c8e9bcbdd3e8d044c19440acb1861f29ed2a3563b0015eb6c9c2ebef3037e87b 01:06:08 Stored in directory: /home/omero/.cache/pip/wheels/8b/82/d4/64ba3d9f4efaa51110316831003d98aee03867a3665750278c 01:06:08 Successfully built omero-web 01:06:08 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web 01:06:11 01:06:11 Successfully installed Django-4.2.23 asgiref-3.9.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.2.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0 01:06:11 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:06:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 01:06:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 01:06:11 --2025-08-13 01:06:11-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:06:11 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.109.133, ... 01:06:11 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 01:06:11 HTTP request sent, awaiting response... 200 OK 01:06:12 Length: 125081 (122K) [text/plain] 01:06:12 Saving to: ‘Figure_To_Pdf.py’ 01:06:12 01:06:12 0K .......... .......... .......... .......... .......... 40% 3.93M 0s 01:06:12 50K .......... .......... .......... .......... .......... 81% 5.80M 0s 01:06:12 100K .......... .......... .. 100% 64.0M=0.02s 01:06:12 01:06:12 2025-08-13 01:06:12 (5.63 MB/s) - ‘Figure_To_Pdf.py’ saved [125081/125081] 01:06:12 01:06:12 + chmod 755 Figure_To_Pdf.py 01:06:12 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 01:06:12 + omero config set omero.db.name OMERO-server 01:06:13 + omero config set omero.db.host pg 01:06:14 + omero config set omero.db.user postgres 01:06:15 + omero config set omero.data.dir /home/omero/omero-server-data 01:06:17 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 01:06:18 + omero config set omero.db.poolsize 25 01:06:19 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 01:06:20 + omero config set omero.security.trustStorePassword changeit 01:06:22 + omero config set omero.mail.config true 01:06:23 + omero config set omero.mail.from qa@openmicroscopy.org.uk 01:06:24 + omero config set omero.mail.host smtp.dundee.ac.uk 01:06:26 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 01:06:27 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 01:06:28 + omero certificates 01:06:29 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024) 01:06:29 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 01:06:29 + '[' false = true ']' 01:06:29 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 01:06:29 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 01:06:29 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 01:06:30 2025-08-13 01:06:30,176 [ omego.db] DEBUG dbcommand => upgrade 01:06:30 2025-08-13 01:06:30,176 [ omego.db] DEBUG dbhost => localhost 01:06:30 2025-08-13 01:06:30,176 [ omego.db] DEBUG dbname => OMERO-server 01:06:30 2025-08-13 01:06:30,176 [ omego.db] DEBUG dbpass => omero 01:06:30 2025-08-13 01:06:30,176 [ omego.db] DEBUG dbuser => omero 01:06:30 2025-08-13 01:06:30,176 [ omego.db] DEBUG rootpass => omero 01:06:30 2025-08-13 01:06:30,176 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 01:06:30 2025-08-13 01:06:30,176 [omego.extern] INFO Executing : omero version 01:06:31 OMERO.py version: 01:06:31 OMERO.server version: 01:06:31 5.6.3-574-1aaa45bda9-ice36-b493 01:06:31 5.21.1.dev0 01:06:31 2025-08-13 01:06:31,459 [omego.extern] INFO Completed [1.283 s] 01:06:31 2025-08-13 01:06:31,459 [omego.extern] DEBUG Using omero CLI from omero 01:06:31 2025-08-13 01:06:31,459 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 01:06:31 2025-08-13 01:06:31,459 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:06:31 2025-08-13 01:06:31,459 [omego.extern] INFO Executing : omero config get --show-password 01:06:32 2025-08-13 01:06:32,756 [omego.extern] INFO Completed [1.297 s] 01:06:32 2025-08-13 01:06:32,757 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:06:32 2025-08-13 01:06:32,757 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 01:06:33 2025-08-13 01:06:33,155 [omego.extern] INFO Completed [0.398 s] 01:06:33 2025-08-13 01:06:33,155 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.9\n' 01:06:33 2025-08-13 01:06:33,155 [ omego.db] INFO psql version: psql (PostgreSQL) 16.9 01:06:33 01:06:33 2025-08-13 01:06:33,155 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:06:33 2025-08-13 01:06:33,155 [omego.extern] INFO Executing : omero config get --show-password 01:06:34 2025-08-13 01:06:34,449 [omego.extern] INFO Completed [1.294 s] 01:06:34 2025-08-13 01:06:34,449 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:06:34 2025-08-13 01:06:34,450 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 01:06:34 2025-08-13 01:06:34,605 [omego.extern] INFO Completed [0.156 s] 01:06:34 2025-08-13 01:06:34,605 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n' 01:06:34 2025-08-13 01:06:34,605 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:06:34 2025-08-13 01:06:34,606 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:06:34 2025-08-13 01:06:34,606 [omego.extern] INFO Executing : omero config get --show-password 01:06:35 2025-08-13 01:06:35,895 [omego.extern] INFO Completed [1.289 s] 01:06:35 2025-08-13 01:06:35,895 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:06:35 2025-08-13 01:06:35,895 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:06:36 2025-08-13 01:06:36,765 [omego.extern] INFO Completed [0.870 s] 01:06:36 2025-08-13 01:06:36,765 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 01:06:36 2025-08-13 01:06:36,765 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 01:06:36 2025-08-13 01:06:36,767 [ omego.db] INFO Database is already at OMERO5.4__0 01:06:36 + export LANG=en_US.UTF-8 01:06:36 + LANG=en_US.UTF-8 01:06:36 + export LANGUAGE=en_US:en 01:06:36 + LANGUAGE=en_US:en 01:06:36 + export LC_ALL=en_US.UTF-8 01:06:36 + LC_ALL=en_US.UTF-8 01:06:36 + BUILD_ID=DONT_KILL_ME 01:06:36 + omero admin start 01:06:42 No descriptor given. Using etc/grid/default.xml 01:06:55 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 01:06:55 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 01:06:55 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 01:06:55 Waiting on startup. Use CTRL-C to exit 01:06:56 + omero admin waitup 01:06:57 Waiting on startup. Use CTRL-C to exit 01:06:57 + omero admin diagnostics 01:06:58 01:06:58 ================================================================================ 01:06:58 OMERO Diagnostics (admin) 01:06:58 ================================================================================ 01:06:58 01:06:58 Commands: java -version 11.0.25 (/usr/bin/java) 01:06:59 Commands: python -V 3.11.11 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 01:06:59 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 01:06:59 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 01:06:59 Commands: psql --version 16.9 (/usr/bin/psql) 01:06:59 Commands: openssl version 3.2.24 (/usr/bin/openssl) 01:06:59 01:06:59 Component: OMERO.py 5.21.1.dev0 01:06:59 Component: OMERO.server 5.6.3-574-1aaa45bda9-ice36-b493 01:06:59 01:06:59 Server: icegridnode running 01:06:59 Server: Blitz-0 active (pid = 2378, enabled) 01:06:59 Server: Indexer-0 active (pid = 2399, enabled) 01:06:59 Server: OMERO.Glacier2 active (pid = 2425, enabled) 01:06:59 Server: OMERO.IceStorm active (pid = 2423, enabled) 01:06:59 Server: Processor-0 activating (enabled) 01:06:59 Server: Tables-0 activating (enabled) 01:06:59 01:06:59 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 01:06:59 Log files: Blitz-0.log 14.0 KB errors=0 warnings=1 01:06:59 Log files: DropBox.log n/a 01:06:59 Log files: FileServer.log n/a 01:06:59 Log files: Indexer-0.log 2.6 KB 01:06:59 Log files: MonitorServer.log n/a 01:06:59 Log files: Processor-0.log 592 B 01:06:59 Log files: Tables-0.log 841 B 01:06:59 Log files: TestDropBox.log n/a 01:06:59 Log files: master.err empty 01:06:59 Log files: master.out 30.5 KB 01:06:59 Log files: Total size 0.05 MB 01:06:59 01:06:59 01:06:59 Environment:OMERO_HOME=(unset) 01:06:59 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:06:59 Environment:OMERO_NODE=(unset) 01:06:59 Environment:OMERO_MASTER=(unset) 01:06:59 Environment:OMERO_USERDIR=(unset) 01:06:59 Environment:OMERO_TMPDIR=(unset) 01:06:59 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:06:59 Environment:PYTHONPATH=(unset) 01:06:59 Environment:ICE_HOME=/opt/ice-3.6.5 01:06:59 Environment:LD_LIBRARY_PATH=(unset) 01:06:59 Environment:DYLD_LIBRARY_PATH=(unset) 01:06:59 01:06:59 OMERO SSL port:4064 01:06:59 OMERO TCP port:4063 01:06:59 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 01:06:59 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 01:06:59 01:06:59 JVM settings: Blitz-${index} -Xmx7200m 01:06:59 JVM settings: Indexer-${index} -Xmx4800m 01:06:59 JVM settings: PixelData-${index} -Xmx7200m 01:06:59 JVM settings: Repository-${index} -Xmx4800m 01:06:59 01:06:59 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 13 August 2025 c28c0458193d104ca2270ba613bfc3b51e2001d7 01:06:59 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 13 August 2025 c28c0458193d104ca2270ba613bfc3b51e2001d7 01:06:59 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 13 August 2025 c28c0458193d104ca2270ba613bfc3b51e2001d7 01:06:59 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.2-SNAPSHOT 13 August 2025 d797b375bc297aa95274c293a5c166abc61b20bf 01:06:59 Jar: lib/server/ome-common.jar OME Common Java 6.1.1-SNAPSHOT 13 August 2025 d797b375bc297aa95274c293a5c166abc61b20bf 01:06:59 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 13 August 2025 d797b375bc297aa95274c293a5c166abc61b20bf 01:06:59 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 13 August 2025 d797b375bc297aa95274c293a5c166abc61b20bf 01:06:59 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 13 August 2025 d797b375bc297aa95274c293a5c166abc61b20bf 01:06:59 Jar: lib/server/ome-xml.jar OME XML library 6.5.1-SNAPSHOT 13 August 2025 d797b375bc297aa95274c293a5c166abc61b20bf 01:06:59 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT 01:06:59 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT 01:06:59 Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT 01:06:59 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT 01:06:59 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT 01:06:59 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT 01:06:59 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT 01:06:59 Jar: lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.5.1-SNAPSHOT c639dc9bc77d89e3725caecd07175b06db585fd4 01:06:59 + deactivate 01:06:59 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:06:59 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:06:59 + export PATH 01:06:59 + unset _OLD_VIRTUAL_PATH 01:06:59 + '[' -n '' ']' 01:06:59 + hash -r 01:06:59 + '[' -n '' ']' 01:06:59 + unset VIRTUAL_ENV 01:06:59 + unset VIRTUAL_ENV_PROMPT 01:06:59 + '[' '!' '' = nondestructive ']' 01:06:59 + unset -f deactivate 01:07:00 Finished: SUCCESS