11:29:32 Started by user devspace 11:29:32 Running as SYSTEM 11:29:32 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 11:29:33 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9024619673835962297.sh 11:29:33 + source /home/settings.env 11:29:33 ++ OMERO_DB_HOST=pg 11:29:33 ++ OMERO_DB_USER=postgres 11:29:33 ++ OMERO_DB_PASS= 11:29:33 ++ OMERO_ROOT_PASS=omero 11:29:33 ++ OMERO_DATA_DIR=/OMERO 11:29:33 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:29:33 + OMERO_DB_NAME=OMERO-server 11:29:33 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 11:29:33 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:29:33 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:29:33 + OMERO_DATA_DIR=/home/omero/omero-server-data 11:29:33 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 11:29:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 11:29:33 ++ deactivate nondestructive 11:29:33 ++ '[' -n '' ']' 11:29:33 ++ '[' -n '' ']' 11:29:33 ++ hash -r 11:29:33 ++ '[' -n '' ']' 11:29:33 ++ unset VIRTUAL_ENV 11:29:33 ++ unset VIRTUAL_ENV_PROMPT 11:29:33 ++ '[' '!' nondestructive = nondestructive ']' 11:29:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 11:29:33 ++ export VIRTUAL_ENV 11:29:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:29:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:29:33 ++ export PATH 11:29:33 ++ '[' -n '' ']' 11:29:33 ++ '[' -z '' ']' 11:29:33 ++ _OLD_VIRTUAL_PS1= 11:29:33 ++ PS1='(.venv3) ' 11:29:33 ++ export PS1 11:29:33 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 11:29:33 ++ export VIRTUAL_ENV_PROMPT 11:29:33 ++ hash -r 11:29:33 + omero admin stop 11:29:53 Server not running 11:29:53 + echo not running 11:29:53 not running 11:29:53 + sleep 5 11:29:58 + deactivate 11:29:58 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 11:29:58 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:29:58 + export PATH 11:29:58 + unset _OLD_VIRTUAL_PATH 11:29:58 + '[' -n '' ']' 11:29:58 + hash -r 11:29:58 + '[' -n '' ']' 11:29:58 + unset VIRTUAL_ENV 11:29:58 + unset VIRTUAL_ENV_PROMPT 11:29:58 + '[' '!' '' = nondestructive ']' 11:29:58 + unset -f deactivate 11:29:58 + rm -rf /home/omero/workspace/OMERO-server/.venv3 11:31:47 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 11:32:08 + '[' false = true ']' 11:32:08 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 11:32:08 Skipping PURGE_DATA:CleanDbAndRepo 11:32:08 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 11:32:14 Copied 1 artifact from "OMERO-build" build number 61 11:32:14 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 51 11:32:15 Copied 2 artifacts from "OMERO-build-build" build number 63 11:32:15 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7457351282584405473.sh 11:32:15 + source /home/settings.env 11:32:15 ++ OMERO_DB_HOST=pg 11:32:15 ++ OMERO_DB_USER=postgres 11:32:15 ++ OMERO_DB_PASS= 11:32:15 ++ OMERO_ROOT_PASS=omero 11:32:15 ++ OMERO_DATA_DIR=/OMERO 11:32:15 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:32:15 + OMERO_DB_NAME=OMERO-server 11:32:15 + OMERO_DATA_DIR=/home/omero/omero-server-data 11:32:15 + mkdir -p /home/omero/omero-server-data 11:32:15 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 11:32:15 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:32:15 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:32:15 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 11:32:15 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 11:32:15 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 11:32:15 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 11:32:15 ++ ls OMERO.server-5.6.3-675-3891c34714-ice36-b61.zip 11:32:15 + ZIP=OMERO.server-5.6.3-675-3891c34714-ice36-b61.zip 11:32:15 + '[' '!' -z '' ']' 11:32:15 + DIST=OMERO.server-5.6.3-675-3891c34714-ice36-b61 11:32:15 + unzip OMERO.server-5.6.3-675-3891c34714-ice36-b61.zip 11:32:15 Archive: OMERO.server-5.6.3-675-3891c34714-ice36-b61.zip 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/blitz/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/grid/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/profiles/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/error/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/grid/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/luts/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/luts/janelia/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/luts/matplotlib/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/luts/ncsa_paledit/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/luts/seaborn/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/luts/wcif/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/omero/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/omero/analysis_scripts/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/omero/annotation_scripts/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/omero/export_scripts/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/omero/figure_scripts/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/omero/import_scripts/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/scripts/omero/util_scripts/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/server/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/share/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/share/licenses/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/misc/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__1/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__10/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__11/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__2/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__3/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__4/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__5/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__6/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__7/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__8/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3A__9/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3__4/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3__5/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3__6/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO3__7/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO4.1__0/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO4.2__0/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO4.2__0/t/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO4.3__0/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO4.4__0/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO4__0/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.0__0/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.1__1/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.2__0/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.3__0/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4DEV__1/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4DEV__2/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4DEV__3/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/var/ 11:32:15 creating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/var/tmp/ 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/LICENSE.txt 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/backup.cfg 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/blitz/mail-senders.example 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/blitz/mail-server.example 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/build.properties 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/env.bat 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/env.sh 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/hibernate.properties 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/ice.config 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/logback-cli.xml 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/logback-indexing-cli.xml 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/logback-indexing.xml 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/logback.xml 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/mime.types 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/node1.cfg 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/node2.cfg 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/omero.properties 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/profiles/psql 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/rollover.cfg 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/Windows.cfg 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/error/maintainance.html 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/grid/README 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/grid/default.xml 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/grid/templates.xml 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/grid/windefault.xml 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/ice.config 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/internal.cfg 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/master.cfg 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/templates/robot.template 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/etc/testdropbox.config 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/history.rst 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/OMEZarrReader.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/accessors-smart.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/activation.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/aggdesigner-algorithm.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/aircompressor.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/annotations.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/antlr.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/aopalliance.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/apache-client.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/apiguardian-api.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/arns.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/asm.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/auth.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/avatica-core.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/avatica-metrics.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/aws-core.jar 11:32:15 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/aws-java-sdk-core.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/aws-java-sdk-kms.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/aws-java-sdk-s3.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/aws-query-protocol.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/aws-xml-protocol.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/base.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/batik-anim.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/batik-awt-util.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/batik-bridge.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/batik-codec.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/batik-constants.jar 11:32:16 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/lib/client/batik-css.jar 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OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/psql-footer.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/psql-header.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/schema.sql 11:32:32 inflating: OMERO.server-5.6.3-675-3891c34714-ice36-b61/sql/psql/OMERO5.4__0/views.sql 11:32:32 + rm -f OMERO.server-5.6.3-675-3891c34714-ice36-b61.zip 11:32:32 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-675-3891c34714-ice36-b61 /home/omero/workspace/OMERO-server/OMERO.server 11:32:32 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 11:32:32 ++ deactivate nondestructive 11:32:32 ++ '[' -n '' ']' 11:32:32 ++ '[' -n '' ']' 11:32:32 ++ hash -r 11:32:32 ++ '[' -n '' ']' 11:32:32 ++ unset VIRTUAL_ENV 11:32:32 ++ unset VIRTUAL_ENV_PROMPT 11:32:32 ++ '[' '!' nondestructive = nondestructive ']' 11:32:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 11:32:32 ++ export VIRTUAL_ENV 11:32:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:32:32 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:32:32 ++ export PATH 11:32:32 ++ '[' -n '' ']' 11:32:32 ++ '[' -z '' ']' 11:32:32 ++ _OLD_VIRTUAL_PS1= 11:32:32 ++ PS1='(.venv3) ' 11:32:32 ++ export PS1 11:32:32 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 11:32:32 ++ export VIRTUAL_ENV_PROMPT 11:32:32 ++ hash -r 11:32:32 + pip install -U pip 11:32:33 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 11:32:33 Collecting pip 11:32:33 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 11:32:33 Installing collected packages: pip 11:32:33 Attempting uninstall: pip 11:32:33 Found existing installation: pip 22.3.1 11:32:34 Uninstalling pip-22.3.1: 11:32:34 Successfully uninstalled pip-22.3.1 11:32:48 Successfully installed pip-26.2.1 11:32:48 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 11:32:49 Collecting zeroc-ice==3.6.5 11:32:50 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 11:32:52 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.6 MB/s 0:00:02 11:32:53 Installing collected packages: zeroc-ice 11:32:56 Successfully installed zeroc-ice-3.6.5 11:32:56 + pip install markdown 11:32:58 Collecting markdown 11:32:58 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB) 11:32:58 Using cached markdown-3.10.3-py3-none-any.whl (110 kB) 11:32:58 Installing collected packages: markdown 11:32:59 Successfully installed markdown-3.10.3 11:32:59 + pip install reportlab 11:33:00 Collecting reportlab 11:33:00 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB) 11:33:00 Collecting pillow>=9.0.0 (from reportlab) 11:33:00 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 11:33:01 Collecting charset-normalizer (from reportlab) 11:33:01 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB) 11:33:01 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB) 11:33:01 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 11:33:01 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB) 11:33:01 Installing collected packages: pillow, charset-normalizer, reportlab 11:33:10 11:33:10 Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.1 11:33:10 + pip install omego 11:33:11 Collecting omego 11:33:11 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 11:33:12 Collecting future (from omego) 11:33:12 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 11:33:12 Collecting yaclifw>=0.1.1 (from omego) 11:33:12 Using cached yaclifw-0.2.0-py3-none-any.whl 11:33:12 Collecting six (from yaclifw>=0.1.1->omego) 11:33:12 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 11:33:12 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 11:33:12 Using cached future-1.0.0-py3-none-any.whl (491 kB) 11:33:12 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 11:33:12 Installing collected packages: six, future, yaclifw, omego 11:33:18 11:33:18 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 11:33:18 + pip install tables 11:33:19 Collecting tables 11:33:19 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 11:33:19 Collecting numpy>=1.20.0 (from tables) 11:33:19 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 11:33:20 Collecting numexpr>=2.6.2 (from tables) 11:33:20 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 11:33:20 Collecting packaging (from tables) 11:33:20 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 11:33:20 Collecting py-cpuinfo (from tables) 11:33:20 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 11:33:20 Collecting blosc2>=2.3.0 (from tables) 11:33:20 Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) 11:33:20 Collecting ndindex (from blosc2>=2.3.0->tables) 11:33:20 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 11:33:20 Collecting msgpack (from blosc2>=2.3.0->tables) 11:33:20 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 11:33:20 Collecting pydantic (from blosc2>=2.3.0->tables) 11:33:20 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB) 11:33:20 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 11:33:21 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 11:33:21 Collecting rich (from blosc2>=2.3.0->tables) 11:33:21 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 11:33:21 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 11:33:21 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) 11:33:21 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 11:33:21 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB) 11:33:21 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 11:33:21 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 11:33:21 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 11:33:21 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 11:33:21 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 11:33:21 Using cached idna-3.19-py3-none-any.whl.metadata (9.2 kB) 11:33:21 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 11:33:21 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 11:33:21 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 11:33:21 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 11:33:21 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 11:33:21 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 11:33:21 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 11:33:21 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 11:33:21 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 11:33:21 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 11:33:21 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 11:33:21 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 11:33:22 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables) 11:33:22 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 11:33:22 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 11:33:22 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 11:33:22 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 11:33:22 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 11:33:22 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 11:33:22 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) 11:33:23 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 11:33:23 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 11:33:23 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 11:33:23 Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.5 MB) 11:33:23 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 11:33:23 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 11:33:23 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 11:33:23 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 11:33:23 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 11:33:23 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 11:33:23 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 11:33:23 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 11:33:23 Using cached anyio-4.14.2-py3-none-any.whl (125 kB) 11:33:23 Using cached idna-3.19-py3-none-any.whl (68 kB) 11:33:23 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 11:33:23 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 11:33:23 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB) 11:33:23 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 11:33:23 Using cached packaging-26.3-py3-none-any.whl (129 kB) 11:33:23 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 11:33:23 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB) 11:33:23 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 11:33:23 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 11:33:23 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 11:33:23 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 11:33:23 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) 11:33:23 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 11:33:23 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 11:33:23 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) 11:33:24 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 11:34:16 11:34:16 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.11.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.19 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.4 typing_extensions-4.16.0 11:34:16 + pip install jinja2 11:34:17 Collecting jinja2 11:34:17 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 11:34:18 Collecting MarkupSafe>=2.0 (from jinja2) 11:34:18 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 11:34:18 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 11:34:18 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 11:34:18 Installing collected packages: MarkupSafe, jinja2 11:34:19 11:34:19 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 11:34:19 + pip install omero-py 11:34:20 Collecting omero-py 11:34:20 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 11:34:20 Collecting appdirs (from omero-py) 11:34:20 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 11:34:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 11:34:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 11:34:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 11:34:20 Collecting PyYAML (from omero-py) 11:34:20 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 11:34:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 11:34:20 Collecting requests (from omero-py) 11:34:20 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 11:34:21 Collecting portalocker (from omero-py) 11:34:21 Using cached portalocker-4.2.0-py3-none-any.whl.metadata (11 kB) 11:34:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1) 11:34:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.19) 11:34:21 Collecting urllib3<3,>=1.26 (from requests->omero-py) 11:34:21 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) 11:34:21 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 11:34:21 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 11:34:21 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 11:34:21 Using cached portalocker-4.2.0-py3-none-any.whl (128 kB) 11:34:21 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 11:34:21 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 11:34:21 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 11:34:21 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 11:34:41 11:34:41 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.2.0 requests-2.34.2 urllib3-2.7.0 11:34:41 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 11:34:42 Collecting omero-metadata 11:34:42 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-5mnui3m7/omero-metadata_28c5ae65837846a98575b6d580d8e042 11:34:42 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-5mnui3m7/omero-metadata_28c5ae65837846a98575b6d580d8e042 11:34:43 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit aa16b625aff81dad767ebf1a92b6a93fde26ea8e 11:34:43 Installing build dependencies: started 11:34:44 Installing build dependencies: finished with status 'done' 11:34:44 Getting requirements to build wheel: started 11:34:45 Getting requirements to build wheel: finished with status 'done' 11:34:45 Preparing metadata (pyproject.toml): started 11:34:45 Preparing metadata (pyproject.toml): finished with status 'done' 11:34:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 11:34:45 Collecting pandas<3,>=2 (from omero-metadata) 11:34:45 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 11:34:45 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 11:34:45 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 11:34:45 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 11:34:45 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 11:34:45 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB) 11:34:46 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 11:34:46 Using cached tzdata-2026.3-py2.py3-none-any.whl.metadata (1.4 kB) 11:34:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 11:34:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 11:34:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 11:34:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 11:34:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 11:34:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 11:34:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.2.0) 11:34:46 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 11:34:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1) 11:34:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.19) 11:34:46 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) 11:34:46 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 11:34:46 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 11:34:46 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 11:34:46 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB) 11:34:46 Using cached tzdata-2026.3-py2.py3-none-any.whl (348 kB) 11:34:46 Building wheels for collected packages: omero-metadata 11:34:46 Building wheel for omero-metadata (pyproject.toml): started 11:34:46 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 11:34:46 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=0806df7739d2ac9c6a70042544cfe21be329f33da43e5a019d5b4cacc9e21b23 11:34:46 Stored in directory: /tmp/pip-ephem-wheel-cache-579y3c1h/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 11:34:46 Successfully built omero-metadata 11:34:46 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 11:36:20 11:36:20 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.3 11:36:20 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 11:36:24 Collecting omero-cli-render 11:36:24 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-rgl6mzg_/omero-cli-render_0c644d8e6ce9460ba2d138d7dfc49487 11:36:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-rgl6mzg_/omero-cli-render_0c644d8e6ce9460ba2d138d7dfc49487 11:36:26 Running command git checkout -b merge_ci --track origin/merge_ci 11:36:27 Switched to a new branch 'merge_ci' 11:36:27 branch 'merge_ci' set up to track 'origin/merge_ci'. 11:36:27 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 5a09643712c325068d283ca4afd89fc246bab6b8 11:36:27 Installing build dependencies: started 11:36:31 Installing build dependencies: finished with status 'done' 11:36:31 Getting requirements to build wheel: started 11:36:32 Getting requirements to build wheel: finished with status 'done' 11:36:32 Preparing metadata (pyproject.toml): started 11:36:32 Preparing metadata (pyproject.toml): finished with status 'done' 11:36:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 11:36:32 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 11:36:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 11:36:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 11:36:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 11:36:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 11:36:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 11:36:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 11:36:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.2.0) 11:36:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1) 11:36:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.19) 11:36:32 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) 11:36:32 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 11:36:32 Building wheels for collected packages: omero-cli-render 11:36:32 Building wheel for omero-cli-render (pyproject.toml): started 11:36:33 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 11:36:33 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=02a0a7c17528bcb4ec88b0d0ce9b8ed6c827fb9b438cdb345e33069d16578edb 11:36:33 Stored in directory: /tmp/pip-ephem-wheel-cache-uoxv414k/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 11:36:33 Successfully built omero-cli-render 11:36:33 Installing collected packages: omero-cli-render 11:36:34 Successfully installed omero-cli-render-0.8.2.dev0 11:36:34 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 11:36:38 Collecting omero-cli-duplicate 11:36:38 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-olbmlf2e/omero-cli-duplicate_00c1eab7175343b0970f9116c4fe382e 11:36:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-olbmlf2e/omero-cli-duplicate_00c1eab7175343b0970f9116c4fe382e 11:36:39 Running command git checkout -b merge_ci --track origin/merge_ci 11:36:40 Switched to a new branch 'merge_ci' 11:36:40 branch 'merge_ci' set up to track 'origin/merge_ci'. 11:36:40 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 2cad94ff8d176a8d131f04446b733da9b0b0da7c 11:36:40 Installing build dependencies: started 11:36:46 Installing build dependencies: finished with status 'done' 11:36:46 Getting requirements to build wheel: started 11:36:46 Getting requirements to build wheel: finished with status 'done' 11:36:46 Preparing metadata (pyproject.toml): started 11:36:47 Preparing metadata (pyproject.toml): finished with status 'done' 11:36:47 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 11:36:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 11:36:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 11:36:47 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 11:36:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 11:36:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 11:36:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 11:36:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 11:36:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.2.0) 11:36:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1) 11:36:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.19) 11:36:47 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 11:36:47 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 11:36:47 Building wheels for collected packages: omero-cli-duplicate 11:36:47 Building wheel for omero-cli-duplicate (pyproject.toml): started 11:36:47 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 11:36:47 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=3a674329374810887ad5d4ef68d729b9fb586d9b8838615e9f7012db57c14d9a 11:36:47 Stored in directory: /tmp/pip-ephem-wheel-cache-xfgp3qr5/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 11:36:47 Successfully built omero-cli-duplicate 11:36:48 Installing collected packages: omero-cli-duplicate 11:36:48 Successfully installed omero-cli-duplicate-0.4.1.dev0 11:36:48 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 11:36:52 Collecting omero-cli-zarr 11:36:52 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-skpqpoi0/omero-cli-zarr_fb9482d7385443e7aa5e20c7655784fd 11:36:52 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-skpqpoi0/omero-cli-zarr_fb9482d7385443e7aa5e20c7655784fd 11:36:53 Running command git checkout -b merge_ci --track origin/merge_ci 11:36:54 Switched to a new branch 'merge_ci' 11:36:54 branch 'merge_ci' set up to track 'origin/merge_ci'. 11:36:54 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 032bc7920ab6de181fe001478748a4d927893900 11:36:54 Installing build dependencies: started 11:36:59 Installing build dependencies: finished with status 'done' 11:36:59 Getting requirements to build wheel: started 11:36:59 Getting requirements to build wheel: finished with status 'done' 11:36:59 Installing backend dependencies: started 11:37:04 Installing backend dependencies: finished with status 'done' 11:37:04 Preparing metadata (pyproject.toml): started 11:37:04 Preparing metadata (pyproject.toml): finished with status 'done' 11:37:04 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 11:37:05 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 11:37:05 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 11:37:05 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 11:37:05 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 11:37:05 Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB) 11:37:05 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 11:37:05 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 11:37:05 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 11:37:05 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB) 11:37:06 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 11:37:06 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 11:37:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 11:37:06 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 11:37:06 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 11:37:06 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 11:37:07 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 11:37:07 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 11:37:07 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 11:37:07 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 11:37:07 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 11:37:07 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 11:37:07 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 11:37:07 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 11:37:07 Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB) 11:37:07 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 11:37:07 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 11:37:07 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 11:37:07 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 11:37:08 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 11:37:08 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 11:37:08 Collecting importlib_metadata>=4.13.0 (from 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attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB) 11:37:11 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 11:37:11 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 11:37:11 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 11:37:11 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) 11:37:12 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 11:37:12 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB) 11:37:12 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.57,>=1.43.3->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0) 11:37:12 Requirement 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pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 11:37:13 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB) 11:37:13 Using cached aiobotocore-3.9.0-py3-none-any.whl (100 kB) 11:37:13 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 11:37:13 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 11:37:13 Using cached botocore-1.43.56-py3-none-any.whl (15.4 MB) 11:37:13 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 11:37:13 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 11:37:14 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB) 11:37:14 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB) 11:37:14 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 11:37:14 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 11:37:14 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 11:37:14 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 11:37:14 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) 11:37:14 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 11:37:14 Using cached imageio-2.37.4-py3-none-any.whl (318 kB) 11:37:14 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 11:37:14 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 11:37:14 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 11:37:14 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 11:37:14 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 11:37:14 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 11:37:14 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 11:37:14 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 11:37:14 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 11:37:14 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 11:37:14 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 11:37:14 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 11:37:14 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 11:37:15 Building wheels for collected packages: omero-cli-zarr 11:37:15 Building wheel for omero-cli-zarr (pyproject.toml): started 11:37:15 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 11:37:15 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev180+g032bc79-py3-none-any.whl size=39469 sha256=8b9d480cf8f831e5329298ebd329c622f035a54054739968264cd99436a78230 11:37:15 Stored in directory: /tmp/pip-ephem-wheel-cache-slwfo0nv/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 11:37:15 Successfully built omero-cli-zarr 11:37:15 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 11:37:52 Attempting uninstall: pydantic-core 11:37:52 Found existing installation: pydantic_core 2.46.4 11:37:53 Uninstalling pydantic_core-2.46.4: 11:37:53 Successfully uninstalled pydantic_core-2.46.4 11:38:24 Attempting uninstall: pydantic 11:38:24 Found existing installation: pydantic 2.13.4 11:38:24 Uninstalling pydantic-2.13.4: 11:38:24 Successfully uninstalled pydantic-2.13.4 11:39:02 11:39:02 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev180+g032bc79 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 11:39:02 + pip install omero-certificates 11:39:03 Collecting omero-certificates 11:39:03 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 11:39:03 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 11:39:03 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 11:39:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 11:39:03 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 11:39:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 11:39:03 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 11:39:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 11:39:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 11:39:03 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.2.0) 11:39:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1) 11:39:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.19) 11:39:03 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 11:39:03 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 11:39:03 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 11:39:04 Installing collected packages: omero-certificates 11:39:04 Successfully installed omero-certificates-0.4.0 11:39:04 + for x in *.tar.gz 11:39:04 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 11:39:05 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 11:39:05 Installing build dependencies: started 11:39:06 Installing build dependencies: finished with status 'done' 11:39:06 Getting requirements to build wheel: started 11:39:06 Getting requirements to build wheel: finished with status 'done' 11:39:06 Preparing metadata (pyproject.toml): started 11:39:07 Preparing metadata (pyproject.toml): finished with status 'done' 11:39:07 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 11:39:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 11:39:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 11:39:07 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 11:39:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 11:39:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 11:39:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 11:39:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 11:39:07 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.2.0) 11:39:07 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1) 11:39:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.19) 11:39:07 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 11:39:07 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 11:39:07 Building wheels for collected packages: omero-dropbox 11:39:07 Building wheel for omero-dropbox (pyproject.toml): started 11:39:07 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 11:39:07 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=1aa097b77440024d48af89f852a490890305ad3755bc8b4046b91f86102a9eef 11:39:07 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 11:39:07 Successfully built omero-dropbox 11:39:07 Installing collected packages: omero-dropbox 11:39:08 Successfully installed omero-dropbox-5.7.1.dev0 11:39:08 + for x in *.tar.gz 11:39:08 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 11:39:08 Processing ./omero_marshal-0.9.2.dev0.tar.gz 11:39:08 Installing build dependencies: started 11:39:10 Installing build dependencies: finished with status 'done' 11:39:10 Getting requirements to build wheel: started 11:39:10 Getting requirements to build wheel: finished with status 'done' 11:39:10 Preparing metadata (pyproject.toml): started 11:39:10 Preparing metadata (pyproject.toml): finished with status 'done' 11:39:10 Building wheels for collected packages: omero_marshal 11:39:10 Building wheel for omero_marshal (pyproject.toml): started 11:39:11 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 11:39:11 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=9fa023d09d87a4b0339bab5ad9dccbd8d43df467971c30e42a4be58e4f67f239 11:39:11 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 11:39:11 Successfully built omero_marshal 11:39:11 Installing collected packages: omero_marshal 11:39:13 Successfully installed omero_marshal-0.9.2.dev0 11:39:13 + for x in *.tar.gz 11:39:13 + pip install -U omero_py-5.23.1.dev0.tar.gz 11:39:14 Processing ./omero_py-5.23.1.dev0.tar.gz 11:39:14 Installing build dependencies: started 11:39:15 Installing build dependencies: finished with status 'done' 11:39:15 Getting requirements to build wheel: started 11:39:16 Getting requirements to build wheel: finished with status 'done' 11:39:16 Preparing metadata (pyproject.toml): started 11:39:16 Preparing metadata (pyproject.toml): finished with status 'done' 11:39:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 11:39:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 11:39:16 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 11:39:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 11:39:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 11:39:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 11:39:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 11:39:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.2.0) 11:39:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1) 11:39:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.19) 11:39:16 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0) 11:39:16 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 11:39:16 Building wheels for collected packages: omero-py 11:39:16 Building wheel for omero-py (pyproject.toml): started 11:39:17 Building wheel for omero-py (pyproject.toml): finished with status 'done' 11:39:17 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787095 sha256=27db2ed45cebbbe4e4492660d32029b305afb46f83e2128418a2dc637ba3ffb8 11:39:17 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 11:39:17 Successfully built omero-py 11:39:17 Installing collected packages: omero-py 11:39:17 Attempting uninstall: omero-py 11:39:17 Found existing installation: omero-py 5.23.0 11:39:18 Uninstalling omero-py-5.23.0: 11:39:28 Successfully uninstalled omero-py-5.23.0 11:39:45 Successfully installed omero-py-5.23.1.dev0 11:39:45 + for x in *.tar.gz 11:39:45 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 11:39:46 Processing ./omero_scripts-5.10.1.dev0.tar.gz 11:39:46 Installing build dependencies: started 11:39:47 Installing build dependencies: finished with status 'done' 11:39:47 Getting requirements to build wheel: started 11:39:48 Getting requirements to build wheel: finished with status 'done' 11:39:48 Preparing metadata (pyproject.toml): started 11:39:48 Preparing metadata (pyproject.toml): finished with status 'done' 11:39:48 Building wheels for collected packages: omero-scripts 11:39:48 Building wheel for omero-scripts (pyproject.toml): started 11:39:48 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 11:39:48 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=c470d531687355b20cdbc4c5cd81ae7fced0c76d09d344ab6dd34d6a10833189 11:39:48 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 11:39:48 Successfully built omero-scripts 11:39:49 Installing collected packages: omero-scripts 11:39:49 Successfully installed omero-scripts-5.10.1.dev0 11:39:50 + for x in *.tar.gz 11:39:50 + pip install -U omero_web-5.32.1.dev0.tar.gz 11:39:50 Processing ./omero_web-5.32.1.dev0.tar.gz 11:39:51 Installing build dependencies: started 11:39:52 Installing build dependencies: finished with status 'done' 11:39:52 Getting requirements to build wheel: started 11:39:53 Getting requirements to build wheel: finished with status 'done' 11:39:53 Preparing metadata (pyproject.toml): started 11:39:53 Preparing metadata (pyproject.toml): finished with status 'done' 11:39:53 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0) 11:39:53 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0) 11:39:53 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 11:39:53 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0) 11:39:53 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB) 11:39:53 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0) 11:39:54 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 11:39:54 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0) 11:39:54 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 11:39:54 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0) 11:39:54 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 11:39:54 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0) 11:39:54 Using cached gunicorn-26.1.0-py3-none-any.whl.metadata (5.5 kB) 11:39:54 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0) 11:39:54 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0) 11:39:54 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (2026.3.post1) 11:39:54 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.2.0) 11:39:54 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.3) 11:39:54 Collecting importlib-resources (from omero-web==5.32.1.dev0) 11:39:54 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 11:39:54 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 11:39:54 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 11:39:54 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 11:39:54 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 11:39:54 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1) 11:39:54 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) 11:39:54 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 11:39:54 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4) 11:39:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0) 11:39:54 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6) 11:39:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3) 11:39:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5) 11:39:54 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2) 11:39:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.5.1) 11:39:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.19) 11:39:54 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0) 11:39:54 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22) 11:39:54 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 11:39:54 Using cached django-5.2.17-py3-none-any.whl (8.3 MB) 11:39:54 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 11:39:54 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 11:39:54 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 11:39:54 Using cached gunicorn-26.1.0-py3-none-any.whl (216 kB) 11:39:54 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 11:39:54 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 11:39:54 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 11:39:54 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 11:39:55 Building wheels for collected packages: omero-web 11:39:55 Building wheel for omero-web (pyproject.toml): started 11:39:56 Building wheel for omero-web (pyproject.toml): finished with status 'done' 11:39:56 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2821627 sha256=7e7a7fdbafcb54e158a922995161dd775e9414f53dd9ad26605db044e2c1f31f 11:39:56 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f 11:39:56 Successfully built omero-web 11:39:56 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 11:41:01 11:41:02 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.1.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 11:41:02 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 11:41:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 11:41:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 11:41:02 --2026-08-24 11:41:02-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 11:41:02 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ... 11:41:02 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 11:41:02 HTTP request sent, awaiting response... 200 OK 11:41:02 Length: 133661 (131K) [text/plain] 11:41:02 Saving to: ‘Figure_To_Pdf.py’ 11:41:02 11:41:02 0K .......... .......... .......... .......... .......... 38% 2.88M 0s 11:41:02 50K .......... .......... .......... .......... .......... 76% 4.81M 0s 11:41:02 100K .......... .......... .......... 100% 7.10M=0.03s 11:41:02 11:41:02 2026-08-24 11:41:02 (4.07 MB/s) - ‘Figure_To_Pdf.py’ saved [133661/133661] 11:41:02 11:41:02 + chmod 755 Figure_To_Pdf.py 11:41:02 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 11:41:02 + omero config set omero.db.name OMERO-server 11:41:11 + omero config set omero.db.host pg 11:41:18 + omero config set omero.db.user postgres 11:41:25 + omero config set omero.data.dir /home/omero/omero-server-data 11:41:31 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 11:41:38 + omero config set omero.db.poolsize 25 11:41:46 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 11:41:55 + omero config set omero.security.trustStorePassword changeit 11:42:02 + omero config set omero.mail.config true 11:42:08 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 11:42:14 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' 11:42:19 + omero certificates 11:42:25 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 11:42:25 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 11:42:25 + '[' false = true ']' 11:42:25 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 11:42:25 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 11:42:25 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 11:42:26 2026-08-24 11:42:26,093 [ omego.db] DEBUG dbcommand => upgrade 11:42:26 2026-08-24 11:42:26,093 [ omego.db] DEBUG dbhost => localhost 11:42:26 2026-08-24 11:42:26,093 [ omego.db] DEBUG dbname => OMERO-server 11:42:26 2026-08-24 11:42:26,093 [ omego.db] DEBUG dbpass => omero 11:42:26 2026-08-24 11:42:26,093 [ omego.db] DEBUG dbuser => omero 11:42:26 2026-08-24 11:42:26,093 [ omego.db] DEBUG rootpass => omero 11:42:26 2026-08-24 11:42:26,093 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 11:42:26 2026-08-24 11:42:26,093 [omego.extern] INFO Executing : omero version 11:42:31 OMERO.py version: 11:42:31 OMERO.server version: 11:42:31 5.6.3-675-3891c34714-ice36-b61 11:42:31 5.23.1.dev0 11:42:32 2026-08-24 11:42:32,304 [omego.extern] INFO Completed [6.211 s] 11:42:32 2026-08-24 11:42:32,304 [omego.extern] DEBUG Using omero CLI from omero 11:42:32 2026-08-24 11:42:32,304 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 11:42:32 2026-08-24 11:42:32,305 [omego.extern] INFO Running [current environment]: omero config get --show-password 11:42:32 2026-08-24 11:42:32,305 [omego.extern] INFO Executing : omero config get --show-password 11:42:38 2026-08-24 11:42:38,525 [omego.extern] INFO Completed [6.221 s] 11:42:38 2026-08-24 11:42:38,525 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 11:42:38 2026-08-24 11:42:38,525 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 11:42:38 2026-08-24 11:42:38,532 [omego.extern] INFO Completed [0.006 s] 11:42:38 2026-08-24 11:42:38,532 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.15\n' 11:42:38 2026-08-24 11:42:38,532 [ omego.db] INFO psql version: psql (PostgreSQL) 16.15 11:42:38 11:42:38 2026-08-24 11:42:38,532 [omego.extern] INFO Running [current environment]: omero config get --show-password 11:42:38 2026-08-24 11:42:38,532 [omego.extern] INFO Executing : omero config get --show-password 11:42:44 2026-08-24 11:42:44,033 [omego.extern] INFO Completed [5.501 s] 11:42:44 2026-08-24 11:42:44,034 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 11:42:44 2026-08-24 11:42:44,034 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 11:42:44 2026-08-24 11:42:44,051 [omego.extern] INFO Completed [0.017 s] 11:42:44 2026-08-24 11:42:44,051 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n' 11:42:44 2026-08-24 11:42:44,051 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 11:42:44 2026-08-24 11:42:44,051 [omego.extern] INFO Running [current environment]: omero config get --show-password 11:42:44 2026-08-24 11:42:44,051 [omego.extern] INFO Executing : omero config get --show-password 11:42:49 2026-08-24 11:42:49,158 [omego.extern] INFO Completed [5.107 s] 11:42:49 2026-08-24 11:42:49,158 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 11:42:49 2026-08-24 11:42:49,158 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 11:42:49 2026-08-24 11:42:49,256 [omego.extern] INFO Completed [0.098 s] 11:42:49 2026-08-24 11:42:49,256 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 11:42:49 2026-08-24 11:42:49,256 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 11:42:49 2026-08-24 11:42:49,296 [ omego.db] INFO Database is already at OMERO5.4__0 11:42:49 + export LANG=en_US.UTF-8 11:42:49 + LANG=en_US.UTF-8 11:42:49 + export LANGUAGE=en_US:en 11:42:49 + LANGUAGE=en_US:en 11:42:49 + export LC_ALL=en_US.UTF-8 11:42:49 + LC_ALL=en_US.UTF-8 11:42:49 + BUILD_ID=DONT_KILL_ME 11:42:49 + omero admin start 11:43:02 WARNING: lock files in /home/omero/omero-server-data 11:43:02 ---------------------------------------- 11:43:02 /home/omero/omero-server-data/.omero/repository/a3d421b1-9991-42f6-9eb8-867f8e8779af/.lock 11:43:02 ---------------------------------------- 11:43:02 11:43:02 You may want to stop all server processes and remove 11:43:02 these files manually. Lock files can remain after an 11:43:02 abrupt server outage and are especially frequent on 11:43:02 remotely mounted filesystems like NFS. 11:43:02 11:43:02 No descriptor given. Using etc/grid/default.xml 11:43:13 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 11:43:13 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 11:43:13 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 11:43:13 Waiting on startup. Use CTRL-C to exit 11:43:13 + omero admin waitup 11:43:19 Waiting on startup. Use CTRL-C to exit 11:43:20 + omero admin diagnostics 11:43:25 11:43:25 ================================================================================ 11:43:25 OMERO Diagnostics (admin) 11:43:25 ================================================================================ 11:43:25 11:43:25 Commands: java -version 21.0.12 (/usr/bin/java) 11:43:25 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 11:43:25 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 11:43:25 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 11:43:25 Commands: psql --version 16.15 (/usr/bin/psql) 11:43:25 Commands: openssl version 3.5.527 (/usr/bin/openssl) 11:43:25 11:43:25 Component: OMERO.py 5.23.1.dev0 11:43:25 Component: OMERO.server 5.6.3-675-3891c34714-ice36-b61 11:43:25 11:43:25 Server: icegridnode running 11:43:25 Server: Blitz-0 active (pid = 3268, enabled) 11:43:25 Server: Indexer-0 active (pid = 3304, enabled) 11:43:25 Server: OMERO.Glacier2 active (pid = 3290, enabled) 11:43:25 Server: OMERO.IceStorm active (pid = 3303, enabled) 11:43:25 Server: Processor-0 active (pid = 3309, enabled) 11:43:25 Server: Tables-0 active (pid = 3296, enabled) 11:43:25 11:43:25 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 11:43:25 Log files: Blitz-0.log 32.3 KB errors=0 warnings=1 11:43:25 Log files: DropBox.log n/a 11:43:25 Log files: FileServer.log n/a 11:43:25 Log files: Indexer-0.log 2.6 KB 11:43:25 Log files: MonitorServer.log n/a 11:43:25 Log files: Processor-0.log 735 B 11:43:25 Log files: Tables-0.log 961 B 11:43:25 Log files: TestDropBox.log n/a 11:43:25 Log files: master.err empty 11:43:25 Log files: master.out 30.5 KB 11:43:25 Log files: Total size 0.07 MB 11:43:25 11:43:25 11:43:25 Environment:OMERO_HOME=(unset) 11:43:25 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:43:25 Environment:OMERO_NODE=(unset) 11:43:25 Environment:OMERO_MASTER=(unset) 11:43:25 Environment:OMERO_USERDIR=(unset) 11:43:25 Environment:OMERO_TMPDIR=(unset) 11:43:25 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:43:25 Environment:PYTHONPATH=(unset) 11:43:25 Environment:ICE_HOME=/opt/ice-3.6.5 11:43:25 Environment:LD_LIBRARY_PATH=(unset) 11:43:25 Environment:DYLD_LIBRARY_PATH=(unset) 11:43:25 11:43:25 OMERO SSL port:4064 11:43:25 OMERO TCP port:4063 11:43:25 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 11:43:25 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 11:43:25 11:43:25 JVM settings: Blitz-${index} -Xmx7200m 11:43:25 JVM settings: Indexer-${index} -Xmx4800m 11:43:25 JVM settings: PixelData-${index} -Xmx7200m 11:43:25 JVM settings: Repository-${index} -Xmx4800m 11:43:25 11:43:25 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 11:43:25 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 11:43:25 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 11:43:25 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 11:43:25 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 11:43:25 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 11:43:25 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 11:43:25 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 11:43:25 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 11:43:26 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 11:43:26 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 11:43:26 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 11:43:26 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 11:43:26 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 11:43:26 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 11:43:26 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 11:43:26 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.0-rc3 4c6a6c7d8fb12449c8080808fd12bf95e996e398 11:43:26 + deactivate 11:43:26 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 11:43:26 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:43:26 + export PATH 11:43:26 + unset _OLD_VIRTUAL_PATH 11:43:26 + '[' -n '' ']' 11:43:26 + hash -r 11:43:26 + '[' -n '' ']' 11:43:26 + unset VIRTUAL_ENV 11:43:26 + unset VIRTUAL_ENV_PROMPT 11:43:26 + '[' '!' '' = nondestructive ']' 11:43:26 + unset -f deactivate 11:43:26 Finished: SUCCESS