00:44:53 Started by upstream project "Trigger" build number 10 00:44:53 originally caused by: 00:44:53 Started by timer 00:44:53 Running as SYSTEM 00:44:53 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:44:53 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3331747753734780947.sh 00:44:53 + source /home/settings.env 00:44:53 ++ OMERO_DB_HOST=pg 00:44:53 ++ OMERO_DB_USER=postgres 00:44:53 ++ OMERO_DB_PASS= 00:44:53 ++ OMERO_ROOT_PASS=omero 00:44:53 ++ OMERO_DATA_DIR=/OMERO 00:44:53 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:44:53 + OMERO_DB_NAME=OMERO-server 00:44:53 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:44:53 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:44:53 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:44:53 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:44:53 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:44:53 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:44:53 ++ deactivate nondestructive 00:44:53 ++ '[' -n '' ']' 00:44:53 ++ '[' -n '' ']' 00:44:53 ++ hash -r 00:44:53 ++ '[' -n '' ']' 00:44:53 ++ unset VIRTUAL_ENV 00:44:53 ++ unset VIRTUAL_ENV_PROMPT 00:44:53 ++ '[' '!' nondestructive = nondestructive ']' 00:44:53 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:44:53 ++ export VIRTUAL_ENV 00:44:53 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:44:53 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:44:53 ++ export PATH 00:44:53 ++ '[' -n '' ']' 00:44:53 ++ '[' -z '' ']' 00:44:53 ++ _OLD_VIRTUAL_PS1= 00:44:53 ++ PS1='(.venv3) ' 00:44:53 ++ export PS1 00:44:53 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 00:44:53 ++ export VIRTUAL_ENV_PROMPT 00:44:53 ++ hash -r 00:44:53 + omero admin stop 00:44:54 Waiting on shutdown. Use CTRL-C to exit 00:44:54 .+ sleep 5 00:45:09 + deactivate 00:45:09 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:45:09 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:09 + export PATH 00:45:09 + unset _OLD_VIRTUAL_PATH 00:45:09 + '[' -n '' ']' 00:45:09 + hash -r 00:45:09 + '[' -n '' ']' 00:45:09 + unset VIRTUAL_ENV 00:45:09 + unset VIRTUAL_ENV_PROMPT 00:45:09 + '[' '!' '' = nondestructive ']' 00:45:09 + unset -f deactivate 00:45:09 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:45:10 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 00:45:13 + '[' false = true ']' 00:45:13 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:45:13 Skipping PURGE_DATA:CleanDbAndRepo 00:45:13 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:45:15 Copied 1 artifact from "OMERO-build" build number 5 00:45:15 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 5 00:45:15 Copied 2 artifacts from "OMERO-build-build" build number 8 00:45:15 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17845539807943731712.sh 00:45:15 + source /home/settings.env 00:45:15 ++ OMERO_DB_HOST=pg 00:45:15 ++ OMERO_DB_USER=postgres 00:45:15 ++ OMERO_DB_PASS= 00:45:15 ++ OMERO_ROOT_PASS=omero 00:45:15 ++ OMERO_DATA_DIR=/OMERO 00:45:15 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:45:15 + OMERO_DB_NAME=OMERO-server 00:45:15 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:45:15 + mkdir -p /home/omero/omero-server-data 00:45:15 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:45:15 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:45:15 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:45:15 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:45:15 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:45:15 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:45:15 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:45:15 ++ ls OMERO.server-5.6.3-576-8213c47762-ice36-b5.zip 00:45:15 + ZIP=OMERO.server-5.6.3-576-8213c47762-ice36-b5.zip 00:45:15 + '[' '!' -z '' ']' 00:45:15 + DIST=OMERO.server-5.6.3-576-8213c47762-ice36-b5 00:45:15 + unzip OMERO.server-5.6.3-576-8213c47762-ice36-b5.zip 00:45:15 Archive: OMERO.server-5.6.3-576-8213c47762-ice36-b5.zip 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/blitz/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/grid/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/profiles/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/error/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/grid/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/luts/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/luts/janelia/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/luts/matplotlib/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/luts/ncsa_paledit/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/luts/seaborn/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/luts/wcif/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/omero/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/omero/analysis_scripts/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/omero/annotation_scripts/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/omero/export_scripts/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/omero/figure_scripts/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/omero/import_scripts/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/scripts/omero/util_scripts/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/server/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/share/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/share/licenses/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/misc/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__1/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__10/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__11/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__2/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__3/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__4/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__5/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__6/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__7/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__8/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3A__9/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3__4/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3__5/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3__6/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3__7/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.1__0/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.2__0/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.2__0/t/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.3__0/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.4__0/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4__0/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.0__0/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.1__1/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.2__0/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.3__0/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4DEV__1/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4DEV__2/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4DEV__3/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/var/ 00:45:15 creating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/var/tmp/ 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/LICENSE.txt 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/backup.cfg 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/blitz/mail-senders.example 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/blitz/mail-server.example 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/build.properties 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/env.bat 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/env.sh 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/hibernate.properties 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/ice.config 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/logback-cli.xml 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/logback-indexing-cli.xml 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/logback-indexing.xml 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/logback.xml 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/mime.types 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/node1.cfg 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/node2.cfg 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/omero.properties 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/profiles/psql 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/rollover.cfg 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/Windows.cfg 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/error/maintainance.html 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/grid/README 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/grid/default.xml 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/grid/templates.xml 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/grid/windefault.xml 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/ice.config 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/internal.cfg 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/master.cfg 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/templates/robot.template 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/etc/testdropbox.config 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/history.rst 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/OMEZarrReader.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/accessors-smart.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/activation.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/aggdesigner-algorithm.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/aircompressor.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/antlr.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/aopalliance.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/apiguardian-api.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/asm.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/avatica-core.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/avatica-metrics.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/aws-java-sdk-core.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/aws-java-sdk-kms.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/aws-java-sdk-s3.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/base.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-anim.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-awt-util.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-bridge.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-codec.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-constants.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-css.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-dom.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-ext.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-gvt.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-i18n.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-parser.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-script.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-shared-resources.jar 00:45:15 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/lib/client/batik-svg-dom.jar 00:45:15 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OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3__5/OMERO3__4.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3__6/OMERO3__5.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO3__7/OMERO3__6.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.1__0/OMERO4__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO4__0/OMERO3A__11.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/psql-footer.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/psql-header.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/schema.sql 00:45:17 inflating: OMERO.server-5.6.3-576-8213c47762-ice36-b5/sql/psql/OMERO5.4__0/views.sql 00:45:17 + rm -f OMERO.server-5.6.3-576-8213c47762-ice36-b5.zip 00:45:17 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-576-8213c47762-ice36-b5 /home/omero/workspace/OMERO-server/OMERO.server 00:45:17 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:45:17 ++ deactivate nondestructive 00:45:17 ++ '[' -n '' ']' 00:45:17 ++ '[' -n '' ']' 00:45:17 ++ hash -r 00:45:17 ++ '[' -n '' ']' 00:45:17 ++ unset VIRTUAL_ENV 00:45:17 ++ unset VIRTUAL_ENV_PROMPT 00:45:17 ++ '[' '!' nondestructive = nondestructive ']' 00:45:17 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:45:17 ++ export VIRTUAL_ENV 00:45:17 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:17 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:17 ++ export PATH 00:45:17 ++ '[' -n '' ']' 00:45:17 ++ '[' -z '' ']' 00:45:17 ++ _OLD_VIRTUAL_PS1= 00:45:17 ++ PS1='(.venv3) ' 00:45:17 ++ export PS1 00:45:17 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 00:45:17 ++ export VIRTUAL_ENV_PROMPT 00:45:17 ++ hash -r 00:45:17 + pip install -U pip 00:45:18 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 00:45:18 Collecting pip 00:45:18 Using cached pip-25.3-py3-none-any.whl (1.8 MB) 00:45:18 Installing collected packages: pip 00:45:18 Attempting uninstall: pip 00:45:18 Found existing installation: pip 22.3.1 00:45:18 Uninstalling pip-22.3.1: 00:45:18 Successfully uninstalled pip-22.3.1 00:45:19 Successfully installed pip-25.3 00:45:19 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:45:19 Collecting zeroc-ice==3.6.5 00:45:20 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:45:21 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.4 MB/s 0:00:01 00:45:21 Installing collected packages: zeroc-ice 00:45:22 Successfully installed zeroc-ice-3.6.5 00:45:22 + pip install markdown 00:45:23 Collecting markdown 00:45:23 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB) 00:45:23 Using cached markdown-3.10-py3-none-any.whl (107 kB) 00:45:23 Installing collected packages: markdown 00:45:23 Successfully installed markdown-3.10 00:45:23 + pip install reportlab 00:45:23 Collecting reportlab 00:45:23 Downloading reportlab-4.4.7-py3-none-any.whl.metadata (1.7 kB) 00:45:24 Collecting pillow>=9.0.0 (from reportlab) 00:45:24 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB) 00:45:24 Collecting charset-normalizer (from reportlab) 00:45:24 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) 00:45:24 Downloading reportlab-4.4.7-py3-none-any.whl (2.0 MB) 00:45:24 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 21.0 MB/s 0:00:00 00:45:24 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 00:45:24 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 00:45:24 Installing collected packages: pillow, charset-normalizer, reportlab 00:45:25 00:45:25 Successfully installed charset-normalizer-3.4.4 pillow-12.0.0 reportlab-4.4.7 00:45:25 + pip install omego 00:45:25 Collecting omego 00:45:25 Using cached omego-0.7.0-py3-none-any.whl 00:45:25 Collecting future (from omego) 00:45:25 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 00:45:26 Collecting yaclifw>=0.1.1 (from omego) 00:45:26 Using cached yaclifw-0.2.0-py3-none-any.whl 00:45:26 Collecting six (from yaclifw>=0.1.1->omego) 00:45:26 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 00:45:26 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:45:26 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 00:45:26 Installing collected packages: six, future, yaclifw, omego 00:45:26 00:45:26 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 00:45:26 + pip install tables 00:45:26 Collecting tables 00:45:26 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) 00:45:27 Collecting numpy>=1.20.0 (from tables) 00:45:27 Downloading numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 00:45:27 Collecting numexpr>=2.6.2 (from tables) 00:45:27 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 00:45:27 Collecting packaging (from tables) 00:45:27 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB) 00:45:27 Collecting py-cpuinfo (from tables) 00:45:27 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:45:27 Collecting blosc2>=2.3.0 (from tables) 00:45:27 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB) 00:45:27 Collecting typing-extensions>=4.4.0 (from tables) 00:45:27 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) 00:45:27 Collecting ndindex (from blosc2>=2.3.0->tables) 00:45:27 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 00:45:27 Collecting msgpack (from blosc2>=2.3.0->tables) 00:45:27 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:45:27 Collecting platformdirs (from blosc2>=2.3.0->tables) 00:45:27 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB) 00:45:27 Collecting requests (from blosc2>=2.3.0->tables) 00:45:27 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) 00:45:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4) 00:45:27 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 00:45:27 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) 00:45:27 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) 00:45:27 Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB) 00:45:27 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) 00:45:27 Using cached certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB) 00:45:27 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:45:27 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB) 00:45:27 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB) 00:45:27 Downloading numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB) 00:45:28 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.6/16.6 MB 23.1 MB/s 0:00:00 00:45:28 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) 00:45:28 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB) 00:45:28 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 00:45:28 Using cached packaging-25.0-py3-none-any.whl (66 kB) 00:45:28 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB) 00:45:28 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:45:28 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 00:45:28 Using cached idna-3.11-py3-none-any.whl (71 kB) 00:45:28 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB) 00:45:28 Using cached certifi-2025.11.12-py3-none-any.whl (159 kB) 00:45:28 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables 00:45:32 00:45:32 Successfully installed blosc2-3.12.2 certifi-2025.11.12 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.0 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2 00:45:32 + pip install jinja2 00:45:32 Collecting jinja2 00:45:32 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 00:45:32 Collecting MarkupSafe>=2.0 (from jinja2) 00:45:32 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 00:45:32 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 00:45:32 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 00:45:32 Installing collected packages: MarkupSafe, jinja2 00:45:32 00:45:32 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 00:45:32 + pip install omero-py 00:45:33 Collecting omero-py 00:45:33 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB) 00:45:33 Collecting appdirs (from omero-py) 00:45:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:45:33 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 00:45:33 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.0) 00:45:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.0.0) 00:45:33 Collecting PyYAML (from omero-py) 00:45:33 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 00:45:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:45:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5) 00:45:33 Collecting portalocker (from omero-py) 00:45:33 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 00:45:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4) 00:45:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11) 00:45:33 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.2) 00:45:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.11.12) 00:45:33 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) 00:45:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:45:33 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:45:33 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 00:45:33 Installing collected packages: appdirs, PyYAML, portalocker, omero-py 00:45:35 00:45:35 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0 00:45:35 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:45:35 Collecting omero-metadata 00:45:35 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-7ors2j70/omero-metadata_3821a2d633284b51ba297ed37b2ba908 00:45:35 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-7ors2j70/omero-metadata_3821a2d633284b51ba297ed37b2ba908 00:45:36 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 767a03aaf8d6ad3e195571f732c1de9977b4212b 00:45:36 Installing build dependencies: started 00:45:37 Installing build dependencies: finished with status 'done' 00:45:37 Getting requirements to build wheel: started 00:45:37 Getting requirements to build wheel: finished with status 'done' 00:45:37 Preparing metadata (pyproject.toml): started 00:45:37 Preparing metadata (pyproject.toml): finished with status 'done' 00:45:37 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3) 00:45:37 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 00:45:37 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 00:45:37 Collecting pandas (from omero-metadata) 00:45:37 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 00:45:37 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:45:37 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:45:37 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.0) 00:45:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.0.0) 00:45:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:45:37 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5) 00:45:37 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) 00:45:37 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 00:45:37 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:45:37 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:45:37 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:45:37 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) 00:45:37 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:45:37 Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB) 00:45:38 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 00:45:38 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4) 00:45:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11) 00:45:38 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.2) 00:45:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.11.12) 00:45:38 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 00:45:38 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:45:38 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) 00:45:38 Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB) 00:45:38 Building wheels for collected packages: omero-metadata 00:45:38 Building wheel for omero-metadata (pyproject.toml): started 00:45:38 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:45:38 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=238800271dbc9d3a0f0cc779f79725690e766fefc16dda1b84d225ea486c7baa 00:45:38 Stored in directory: /tmp/pip-ephem-wheel-cache-dqte1awl/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 00:45:38 Successfully built omero-metadata 00:45:38 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:45:42 00:45:42 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3 00:45:43 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:45:43 Collecting omero-cli-render 00:45:43 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-ztatk9up/omero-cli-render_339d6dae684b43d1ac4be48526d53cb6 00:45:43 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-ztatk9up/omero-cli-render_339d6dae684b43d1ac4be48526d53cb6 00:45:44 Running command git checkout -b merge_ci --track origin/merge_ci 00:45:44 Switched to a new branch 'merge_ci' 00:45:44 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:45:44 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit cd8045ba5595ccd1f20ef362f93e9e8b48eb0847 00:45:44 Installing build dependencies: started 00:45:45 Installing build dependencies: finished with status 'done' 00:45:45 Getting requirements to build wheel: started 00:45:45 Getting requirements to build wheel: finished with status 'done' 00:45:45 Preparing metadata (pyproject.toml): started 00:45:45 Preparing metadata (pyproject.toml): finished with status 'done' 00:45:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 00:45:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3) 00:45:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:45:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:45:45 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.0) 00:45:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.0.0) 00:45:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:45:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5) 00:45:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) 00:45:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4) 00:45:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11) 00:45:45 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.2) 00:45:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.11.12) 00:45:45 Building wheels for collected packages: omero-cli-render 00:45:45 Building wheel for omero-cli-render (pyproject.toml): started 00:45:45 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:45:45 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=f6d8e90cba94c14810606715eb01c8af9c9e3ab2e030b862d1bcf737713b0208 00:45:45 Stored in directory: /tmp/pip-ephem-wheel-cache-ds36dsbk/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 00:45:45 Successfully built omero-cli-render 00:45:46 Installing collected packages: omero-cli-render 00:45:46 Successfully installed omero-cli-render-0.8.2.dev0 00:45:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:45:46 Collecting omero-cli-duplicate 00:45:46 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-cj1vvxqe/omero-cli-duplicate_372c0a5ae98a4ee3875c923abdd62417 00:45:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-cj1vvxqe/omero-cli-duplicate_372c0a5ae98a4ee3875c923abdd62417 00:45:47 Running command git checkout -b merge_ci --track origin/merge_ci 00:45:47 Switched to a new branch 'merge_ci' 00:45:47 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:45:47 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 6ff8daaf893794a4c30760db89ca6541e2010c90 00:45:47 Installing build dependencies: started 00:45:48 Installing build dependencies: finished with status 'done' 00:45:48 Getting requirements to build wheel: started 00:45:48 Getting requirements to build wheel: finished with status 'done' 00:45:48 Preparing metadata (pyproject.toml): started 00:45:48 Preparing metadata (pyproject.toml): finished with status 'done' 00:45:48 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3) 00:45:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:45:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:45:48 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.0) 00:45:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.0.0) 00:45:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 00:45:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:45:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5) 00:45:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 00:45:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4) 00:45:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11) 00:45:48 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.2) 00:45:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.11.12) 00:45:48 Building wheels for collected packages: omero-cli-duplicate 00:45:48 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:45:48 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:45:48 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=2d66dc6bf1d0246ef534e8ceeb3479007a906d1a8d2f9f06b2b4ee29cc6e8005 00:45:48 Stored in directory: /tmp/pip-ephem-wheel-cache-0y4ip66e/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 00:45:48 Successfully built omero-cli-duplicate 00:45:48 Installing collected packages: omero-cli-duplicate 00:45:49 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:45:49 + pip install omero-certificates 00:45:49 Collecting omero-certificates 00:45:49 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 00:45:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3) 00:45:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:45:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:45:49 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.0) 00:45:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.0.0) 00:45:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 00:45:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:45:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5) 00:45:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 00:45:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4) 00:45:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11) 00:45:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.2) 00:45:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.11.12) 00:45:49 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 00:45:49 Installing collected packages: omero-certificates 00:45:49 Successfully installed omero-certificates-0.4.0 00:45:49 + for x in *.tar.gz 00:45:49 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:45:49 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:45:49 Installing build dependencies: started 00:45:50 Installing build dependencies: finished with status 'done' 00:45:50 Getting requirements to build wheel: started 00:45:51 Getting requirements to build wheel: finished with status 'done' 00:45:51 Preparing metadata (pyproject.toml): started 00:45:51 Preparing metadata (pyproject.toml): finished with status 'done' 00:45:51 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3) 00:45:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:45:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:45:51 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0) 00:45:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.0.0) 00:45:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 00:45:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:45:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5) 00:45:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 00:45:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4) 00:45:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11) 00:45:51 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2) 00:45:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12) 00:45:51 Building wheels for collected packages: omero-dropbox 00:45:51 Building wheel for omero-dropbox (pyproject.toml): started 00:45:51 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:45:51 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=d8c1fc12daca0c12bfe8e47e53644d3548cb93469655b7f0d35250391d6b30de 00:45:51 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 00:45:51 Successfully built omero-dropbox 00:45:51 Installing collected packages: omero-dropbox 00:45:51 Successfully installed omero-dropbox-5.7.1.dev0 00:45:51 + for x in *.tar.gz 00:45:51 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 00:45:52 Processing ./omero_marshal-0.9.2.dev0.tar.gz 00:45:52 Installing build dependencies: started 00:45:52 Installing build dependencies: finished with status 'done' 00:45:52 Getting requirements to build wheel: started 00:45:53 Getting requirements to build wheel: finished with status 'done' 00:45:53 Preparing metadata (pyproject.toml): started 00:45:53 Preparing metadata (pyproject.toml): finished with status 'done' 00:45:53 Building wheels for collected packages: omero_marshal 00:45:53 Building wheel for omero_marshal (pyproject.toml): started 00:45:53 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:45:53 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=1ee851d174cf1a749734dc75a179155bbd5e85fd1cd1dcaba56409a8e38cd33e 00:45:53 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 00:45:53 Successfully built omero_marshal 00:45:53 Installing collected packages: omero_marshal 00:45:53 Successfully installed omero_marshal-0.9.2.dev0 00:45:53 + for x in *.tar.gz 00:45:53 + pip install -U omero_py-5.22.0.dev0.tar.gz 00:45:54 Processing ./omero_py-5.22.0.dev0.tar.gz 00:45:54 Installing build dependencies: started 00:45:55 Installing build dependencies: finished with status 'done' 00:45:55 Getting requirements to build wheel: started 00:45:55 Getting requirements to build wheel: finished with status 'done' 00:45:55 Preparing metadata (pyproject.toml): started 00:45:55 Preparing metadata (pyproject.toml): finished with status 'done' 00:45:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4) 00:45:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0) 00:45:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0) 00:45:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.0.0) 00:45:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3) 00:45:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5) 00:45:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5) 00:45:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0) 00:45:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4) 00:45:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11) 00:45:55 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2) 00:45:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12) 00:45:55 Building wheels for collected packages: omero-py 00:45:55 Building wheel for omero-py (pyproject.toml): started 00:45:57 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:45:57 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=8a12a8e28156f017653656871a20502f91054d59dcbcf18d2fca68190366e530 00:45:57 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3 00:45:57 Successfully built omero-py 00:45:57 Installing collected packages: omero-py 00:45:57 Attempting uninstall: omero-py 00:45:57 Found existing installation: omero-py 5.21.3 00:45:57 Uninstalling omero-py-5.21.3: 00:45:57 Successfully uninstalled omero-py-5.21.3 00:45:59 Successfully installed omero-py-5.22.0.dev0 00:45:59 + for x in *.tar.gz 00:45:59 + pip install -U omero_scripts-5.9.2.dev0.tar.gz 00:45:59 Processing ./omero_scripts-5.9.2.dev0.tar.gz 00:45:59 Installing build dependencies: started 00:46:00 Installing build dependencies: finished with status 'done' 00:46:00 Getting requirements to build wheel: started 00:46:00 Getting requirements to build wheel: finished with status 'done' 00:46:00 Preparing metadata (pyproject.toml): started 00:46:01 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:01 Building wheels for collected packages: omero-scripts 00:46:01 Building wheel for omero-scripts (pyproject.toml): started 00:46:01 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:46:01 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=abfa4a4edf2b5575cf9cb235f97a69a72ca5b391d7b44098a27189475e5be1e3 00:46:01 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850 00:46:01 Successfully built omero-scripts 00:46:01 Installing collected packages: omero-scripts 00:46:01 Successfully installed omero-scripts-5.9.2.dev0 00:46:01 + for x in *.tar.gz 00:46:01 + pip install -U omero_web-5.30.1.dev0.tar.gz 00:46:01 Processing ./omero_web-5.30.1.dev0.tar.gz 00:46:02 Installing build dependencies: started 00:46:03 Installing build dependencies: finished with status 'done' 00:46:03 Getting requirements to build wheel: started 00:46:03 Getting requirements to build wheel: finished with status 'done' 00:46:03 Preparing metadata (pyproject.toml): started 00:46:03 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:03 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0) 00:46:03 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0) 00:46:03 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) 00:46:03 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0) 00:46:03 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB) 00:46:03 Collecting django-pipeline (from omero-web==5.30.1.dev0) 00:46:03 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 00:46:04 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0) 00:46:04 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:46:04 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0) 00:46:04 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB) 00:46:04 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0) 00:46:04 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 00:46:04 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0) 00:46:04 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.0.0) 00:46:04 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (2025.2) 00:46:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0) 00:46:04 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0) 00:46:04 Collecting importlib-resources (from omero-web==5.30.1.dev0) 00:46:04 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 00:46:04 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0) 00:46:04 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB) 00:46:04 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0) 00:46:04 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) 00:46:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4) 00:46:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0) 00:46:04 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.4.0) 00:46:04 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3) 00:46:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5) 00:46:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5) 00:46:04 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (65.5.1) 00:46:04 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0) 00:46:04 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 00:46:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4) 00:46:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11) 00:46:04 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2) 00:46:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12) 00:46:04 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:46:04 Using cached django-5.2.9-py3-none-any.whl (8.3 MB) 00:46:04 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB) 00:46:04 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) 00:46:04 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 00:46:04 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) 00:46:04 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB) 00:46:04 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 00:46:04 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 00:46:04 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 00:46:04 Building wheels for collected packages: omero-web 00:46:04 Building wheel for omero-web (pyproject.toml): started 00:46:05 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:46:05 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=ab7de5e0902a7530e700269a94182a3fb0908358ac97d1c0fb5506074bef792d 00:46:05 Stored in directory: /home/omero/.cache/pip/wheels/55/56/8c/76994afd7450bff12c009b26528517ee8944f8f2e1a40edc6c 00:46:05 Successfully built omero-web 00:46:05 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 00:46:08 00:46:08 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0 00:46:08 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:46:08 --2025-12-22 00:46:08-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:46:08 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... 00:46:08 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. 00:46:08 HTTP request sent, awaiting response... 200 OK 00:46:08 Length: 126476 (124K) [text/plain] 00:46:08 Saving to: ‘Figure_To_Pdf.py’ 00:46:08 00:46:08 0K .......... .......... .......... .......... .......... 40% 3.90M 0s 00:46:08 50K .......... .......... .......... .......... .......... 80% 13.5M 0s 00:46:08 100K .......... .......... ... 100% 4.52M=0.02s 00:46:08 00:46:08 2025-12-22 00:46:08 (5.69 MB/s) - ‘Figure_To_Pdf.py’ saved [126476/126476] 00:46:08 00:46:08 + chmod 755 Figure_To_Pdf.py 00:46:08 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:46:08 + omero config set omero.db.name OMERO-server 00:46:09 + omero config set omero.db.host pg 00:46:10 + omero config set omero.db.user postgres 00:46:12 + omero config set omero.data.dir /home/omero/omero-server-data 00:46:13 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:46:14 + omero config set omero.db.poolsize 25 00:46:15 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:46:16 + omero config set omero.security.trustStorePassword changeit 00:46:17 + omero config set omero.mail.config true 00:46:18 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:46:20 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:46:21 + omero certificates 00:46:22 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025) 00:46:22 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:46:22 + '[' false = true ']' 00:46:22 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:46:22 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:46:22 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:46:22 2025-12-22 00:46:22,709 [ omego.db] DEBUG dbcommand => upgrade 00:46:22 2025-12-22 00:46:22,709 [ omego.db] DEBUG dbhost => localhost 00:46:22 2025-12-22 00:46:22,709 [ omego.db] DEBUG dbname => OMERO-server 00:46:22 2025-12-22 00:46:22,709 [ omego.db] DEBUG dbpass => omero 00:46:22 2025-12-22 00:46:22,709 [ omego.db] DEBUG dbuser => omero 00:46:22 2025-12-22 00:46:22,709 [ omego.db] DEBUG rootpass => omero 00:46:22 2025-12-22 00:46:22,709 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:46:22 2025-12-22 00:46:22,709 [omego.extern] INFO Executing : omero version 00:46:23 OMERO.py version: 00:46:23 OMERO.server version: 00:46:23 5.6.3-576-8213c47762-ice36-b5 00:46:23 5.22.0.dev0 00:46:23 2025-12-22 00:46:23,906 [omego.extern] INFO Completed [1.197 s] 00:46:23 2025-12-22 00:46:23,906 [omego.extern] DEBUG Using omero CLI from omero 00:46:23 2025-12-22 00:46:23,906 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:46:23 2025-12-22 00:46:23,906 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:46:23 2025-12-22 00:46:23,906 [omego.extern] INFO Executing : omero config get --show-password 00:46:25 2025-12-22 00:46:25,065 [omego.extern] INFO Completed [1.159 s] 00:46:25 2025-12-22 00:46:25,066 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:46:25 2025-12-22 00:46:25,066 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:46:25 2025-12-22 00:46:25,173 [omego.extern] INFO Completed [0.108 s] 00:46:25 2025-12-22 00:46:25,173 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n' 00:46:25 2025-12-22 00:46:25,174 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11 00:46:25 00:46:25 2025-12-22 00:46:25,174 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:46:25 2025-12-22 00:46:25,174 [omego.extern] INFO Executing : omero config get --show-password 00:46:26 2025-12-22 00:46:26,350 [omego.extern] INFO Completed [1.177 s] 00:46:26 2025-12-22 00:46:26,351 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:46:26 2025-12-22 00:46:26,351 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:46:26 2025-12-22 00:46:26,361 [omego.extern] INFO Completed [0.010 s] 00:46:26 2025-12-22 00:46:26,361 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.12") at port "5432".\n' 00:46:26 2025-12-22 00:46:26,361 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:46:26 2025-12-22 00:46:26,361 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:46:26 2025-12-22 00:46:26,361 [omego.extern] INFO Executing : omero config get --show-password 00:46:27 2025-12-22 00:46:27,501 [omego.extern] INFO Completed [1.140 s] 00:46:27 2025-12-22 00:46:27,501 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:46:27 2025-12-22 00:46:27,501 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:46:27 2025-12-22 00:46:27,512 [omego.extern] INFO Completed [0.011 s] 00:46:27 2025-12-22 00:46:27,512 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:46:27 2025-12-22 00:46:27,512 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:46:27 2025-12-22 00:46:27,514 [ omego.db] INFO Database is already at OMERO5.4__0 00:46:27 + export LANG=en_US.UTF-8 00:46:27 + LANG=en_US.UTF-8 00:46:27 + export LANGUAGE=en_US:en 00:46:27 + LANGUAGE=en_US:en 00:46:27 + export LC_ALL=en_US.UTF-8 00:46:27 + LC_ALL=en_US.UTF-8 00:46:27 + BUILD_ID=DONT_KILL_ME 00:46:27 + omero admin start 00:46:32 No descriptor given. Using etc/grid/default.xml 00:46:40 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:46:40 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:46:40 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:46:40 Waiting on startup. Use CTRL-C to exit 00:46:40 + omero admin waitup 00:46:41 Waiting on startup. Use CTRL-C to exit 00:46:41 + omero admin diagnostics 00:46:42 00:46:42 ================================================================================ 00:46:42 OMERO Diagnostics (admin) 00:46:42 ================================================================================ 00:46:42 00:46:42 Commands: java -version 11.0.25 (/usr/bin/java) 00:46:42 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:46:42 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:46:42 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:46:42 Commands: psql --version 16.11 (/usr/bin/psql) 00:46:42 Commands: openssl version 3.5.11 (/usr/bin/openssl) 00:46:42 00:46:42 Component: OMERO.py 5.22.0.dev0 00:46:42 Component: OMERO.server 5.6.3-576-8213c47762-ice36-b5 00:46:42 00:46:42 Server: icegridnode running 00:46:42 Server: Blitz-0 active (pid = 92936, enabled) 00:46:42 Server: Indexer-0 activating (enabled) 00:46:42 Server: OMERO.Glacier2 active (pid = 92964, enabled) 00:46:42 Server: OMERO.IceStorm active (pid = 92989, enabled) 00:46:42 Server: Processor-0 activating (enabled) 00:46:42 Server: Tables-0 activating (enabled) 00:46:42 00:46:42 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:46:42 Log files: Blitz-0.log 23.7 KB errors=0 warnings=1 00:46:42 Log files: DropBox.log n/a 00:46:42 Log files: FileServer.log n/a 00:46:42 Log files: Indexer-0.log 114 B 00:46:42 Log files: MonitorServer.log n/a 00:46:42 Log files: Processor-0.log 281 B 00:46:42 Log files: Tables-0.log 281 B 00:46:42 Log files: TestDropBox.log n/a 00:46:42 Log files: master.err empty 00:46:42 Log files: master.out 30.5 KB 00:46:42 Log files: Total size 0.05 MB 00:46:42 00:46:42 00:46:42 Environment:OMERO_HOME=(unset) 00:46:42 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:46:42 Environment:OMERO_NODE=(unset) 00:46:42 Environment:OMERO_MASTER=(unset) 00:46:42 Environment:OMERO_USERDIR=(unset) 00:46:42 Environment:OMERO_TMPDIR=(unset) 00:46:42 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:42 Environment:PYTHONPATH=(unset) 00:46:42 Environment:ICE_HOME=/opt/ice-3.6.5 00:46:42 Environment:LD_LIBRARY_PATH=(unset) 00:46:42 Environment:DYLD_LIBRARY_PATH=(unset) 00:46:42 00:46:42 OMERO SSL port:4064 00:46:42 OMERO TCP port:4063 00:46:42 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:46:42 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:46:42 00:46:42 JVM settings: Blitz-${index} -Xmx7200m 00:46:42 JVM settings: Indexer-${index} -Xmx4800m 00:46:42 JVM settings: PixelData-${index} -Xmx7200m 00:46:42 JVM settings: Repository-${index} -Xmx4800m 00:46:42 00:46:42 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 22 December 2025 82412235515edf8aa4c7f8e1821079d77a206ec7 00:46:42 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 22 December 2025 82412235515edf8aa4c7f8e1821079d77a206ec7 00:46:42 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 22 December 2025 82412235515edf8aa4c7f8e1821079d77a206ec7 00:46:42 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 22 December 2025 54804d2aeb3ad6fc7bdcb7b194df4161025d046b 00:46:42 Jar: lib/server/ome-common.jar OME Common Java 6.1.2-SNAPSHOT 22 December 2025 54804d2aeb3ad6fc7bdcb7b194df4161025d046b 00:46:42 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 22 December 2025 54804d2aeb3ad6fc7bdcb7b194df4161025d046b 00:46:42 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 22 December 2025 54804d2aeb3ad6fc7bdcb7b194df4161025d046b 00:46:42 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 22 December 2025 54804d2aeb3ad6fc7bdcb7b194df4161025d046b 00:46:42 Jar: lib/server/ome-xml.jar OME XML library 6.5.2-SNAPSHOT 22 December 2025 54804d2aeb3ad6fc7bdcb7b194df4161025d046b 00:46:42 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT 00:46:42 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT 00:46:42 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT 00:46:42 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT 00:46:42 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT 00:46:42 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT 00:46:42 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT 00:46:43 + deactivate 00:46:43 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:46:43 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:43 + export PATH 00:46:43 + unset _OLD_VIRTUAL_PATH 00:46:43 + '[' -n '' ']' 00:46:43 + hash -r 00:46:43 + '[' -n '' ']' 00:46:43 + unset VIRTUAL_ENV 00:46:43 + unset VIRTUAL_ENV_PROMPT 00:46:43 + '[' '!' '' = nondestructive ']' 00:46:43 + unset -f deactivate 00:46:43 Finished: SUCCESS