Started by user devspace Running as SYSTEM Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server [OMERO-server] $ /bin/bash -xe /tmp/jenkins13479585265227500436.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERO_DATA_DIR=/home/omero/omero-server-data + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + omero admin stop Server not running + echo not running not running + sleep 5 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate + rm -rf /home/omero/workspace/OMERO-server/.venv3 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo' Skipping PURGE_DATA:CleanDbAndRepo + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties Copied 1 artifact from "OMERO-build" build number 62 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 53 Copied 2 artifacts from "OMERO-build-build" build number 64 [OMERO-server] $ /bin/bash -xe /tmp/jenkins438554362697765678.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DATA_DIR=/home/omero/omero-server-data + mkdir -p /home/omero/omero-server-data + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties ++ ls OMERO.server-5.6.3-676-ca157c25f4-ice36-b62.zip + ZIP=OMERO.server-5.6.3-676-ca157c25f4-ice36-b62.zip + '[' '!' -z '' ']' + DIST=OMERO.server-5.6.3-676-ca157c25f4-ice36-b62 + unzip OMERO.server-5.6.3-676-ca157c25f4-ice36-b62.zip Archive: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62.zip creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/blitz/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/grid/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/profiles/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/error/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/grid/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/luts/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/luts/janelia/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/luts/matplotlib/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/luts/ncsa_paledit/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/luts/seaborn/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/luts/wcif/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/omero/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/omero/analysis_scripts/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/omero/annotation_scripts/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/omero/export_scripts/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/omero/figure_scripts/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/omero/import_scripts/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/scripts/omero/util_scripts/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/server/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/misc/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__1/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__10/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__11/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__2/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__3/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__4/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__5/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__6/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__7/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__8/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__9/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3__4/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3__5/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3__6/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3__7/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.1__0/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.2__0/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.2__0/t/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.3__0/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.4__0/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4__0/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.0__0/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.1__1/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.2__0/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.3__0/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4DEV__1/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4DEV__2/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4DEV__3/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/var/ creating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/var/tmp/ inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/LICENSE.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/backup.cfg inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/blitz/mail-senders.example inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/blitz/mail-server.example inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/build.properties inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/env.bat inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/env.sh inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/hibernate.properties inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/ice.config inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/logback-cli.xml inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/logback-indexing-cli.xml inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/logback-indexing.xml inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/logback.xml inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/mime.types inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/node1.cfg inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/node2.cfg inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/omero.properties inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/profiles/psql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/rollover.cfg inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/Windows.cfg inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/error/maintainance.html inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/grid/README inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/grid/default.xml inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/grid/templates.xml inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/grid/windefault.xml inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/ice.config inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/internal.cfg inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/master.cfg inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/templates/robot.template inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/etc/testdropbox.config inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/history.rst inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/OMEZarrReader.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/accessors-smart.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/activation.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/aggdesigner-algorithm.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/aircompressor.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/annotations.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/antlr.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/aopalliance.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/apache-client.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/apiguardian-api.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/arns.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/asm.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/auth.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/avatica-core.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/avatica-metrics.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/aws-core.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/aws-java-sdk-core.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/aws-java-sdk-kms.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/aws-java-sdk-s3.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/aws-query-protocol.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/aws-xml-protocol.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/base.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-anim.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-awt-util.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-bridge.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-codec.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-constants.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-css.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-dom.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-ext.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-gvt.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-i18n.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-parser.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-script.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-shared-resources.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-svg-dom.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-svggen.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-transcoder.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-util.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/batik-xml.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/blosc-java.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/btm.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/caffeine.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/calcite-core.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/calcite-linq4j.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/cdm-core.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/checker-qual.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/checksums-spi.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/checksums.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/commons-beanutils.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/commons-codec.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/commons-collections.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/commons-collections4.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/commons-compiler.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/commons-compress.jar inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/lib/client/commons-dbcp2.jar inflating: 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OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/gpl-v2.0.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/gpl.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/gtest.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/iconsweets_license.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/jamon.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/jmock.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/jquery.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/jtidy.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/lgpl-3.0.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/lgpl-v2.0.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/lgpl-v2.1.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/lgpl-v3.0.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/lgpl.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/matplotlib.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/mit.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/mpl-v1_0.htm inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/npl-1_1.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/path.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/pil.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/postgresql.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/psf-v2.0.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/psf-v2.5.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/scons.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/slf4j.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/tablelayout.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/which.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/zlib-libpng.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/share/licenses/zpl-v2.1.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/README.txt inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/misc/Makefile inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/misc/current.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/misc/enums.py inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__1/OMERO3__7.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__10/OMERO3A__9.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__11/OMERO3A__10.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__11/OMERO3A__5.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__2/OMERO3A__1.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__3/OMERO3A__2.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__3/OMERO3__5.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__4/OMERO3A__3.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__4/OMERO3__5.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__5/OMERO3A__4.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__6/OMERO3A__5.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__7/OMERO3A__6.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__8/OMERO3A__6.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3A__9/OMERO3A__8.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3__4/OMERO3__1.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3__5/OMERO3__4.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3__6/OMERO3__5.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO3__7/OMERO3__6.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.1__0/OMERO4__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.2__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.3__0/OMERO4.2__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.4__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4.4__0/OMERO4.3__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO4__0/OMERO3A__11.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.0__0/OMERO4.4__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.1__1/OMERO5.1__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.2__0/OMERO5.1__1.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.3__0/OMERO5.2__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.3__0/delete-ns-orphans.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/OMERO5.3__0.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/OMERO5.3__1.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/psql-footer.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/psql-header.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/schema.sql inflating: OMERO.server-5.6.3-676-ca157c25f4-ice36-b62/sql/psql/OMERO5.4__0/views.sql + rm -f OMERO.server-5.6.3-676-ca157c25f4-ice36-b62.zip + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-676-ca157c25f4-ice36-b62 /home/omero/workspace/OMERO-server/OMERO.server + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + pip install -U pip Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.2.1 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.3 MB/s 0:00:02 Installing collected packages: zeroc-ice Successfully installed zeroc-ice-3.6.5 + pip install markdown Collecting markdown Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB) Using cached markdown-3.10.3-py3-none-any.whl (110 kB) Installing collected packages: markdown Successfully installed markdown-3.10.3 + pip install reportlab Collecting reportlab Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB) Collecting pillow>=9.0.0 (from reportlab) Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) Collecting charset-normalizer (from reportlab) Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB) Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB) Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB) Installing collected packages: pillow, charset-normalizer, reportlab Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.1 + pip install omego Collecting omego Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) Collecting future (from omego) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting yaclifw>=0.1.1 (from omego) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting six (from yaclifw>=0.1.1->omego) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Using cached omego-0.8.0-py3-none-any.whl (41 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: six, future, yaclifw, omego Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 + pip install tables Collecting tables Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) Collecting numpy>=1.20.0 (from tables) Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) Collecting numexpr>=2.6.2 (from tables) Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) Collecting packaging (from tables) Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) Collecting py-cpuinfo (from tables) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting blosc2>=2.3.0 (from tables) Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) Collecting ndindex (from blosc2>=2.3.0->tables) Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) Collecting msgpack (from blosc2>=2.3.0->tables) Downloading msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) Collecting pydantic (from blosc2>=2.3.0->tables) Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB) Collecting httpx[http2] (from blosc2>=2.3.0->tables) Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) Collecting rich (from blosc2>=2.3.0->tables) Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) Collecting threadpoolctl (from blosc2>=2.3.0->tables) Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB) Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) Using cached idna-3.19-py3-none-any.whl.metadata (9.2 kB) Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables) Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.5 MB) Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) Using cached httpx-0.28.1-py3-none-any.whl (73 kB) Using cached h2-4.4.1-py3-none-any.whl (62 kB) Using cached hpack-4.2.0-py3-none-any.whl (34 kB) Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) Using cached h11-0.16.0-py3-none-any.whl (37 kB) Using cached anyio-4.14.2-py3-none-any.whl (125 kB) Using cached idna-3.19-py3-none-any.whl (68 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) Downloading msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (422 kB) Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) Using cached packaging-26.3-py3-none-any.whl (129 kB) Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) Using cached pydantic-2.13.4-py3-none-any.whl (472 kB) Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) Using cached rich-15.0.0-py3-none-any.whl (310 kB) Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.11.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.19 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.2 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.4 typing_extensions-4.16.0 + pip install jinja2 Collecting jinja2 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) Collecting MarkupSafe>=2.0 (from jinja2) Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) Installing collected packages: MarkupSafe, jinja2 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 + pip install omero-py Collecting omero-py Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) Collecting appdirs (from omero-py) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) Collecting PyYAML (from omero-py) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) Collecting requests (from omero-py) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting portalocker (from omero-py) Using cached portalocker-4.3.0-py3-none-any.whl.metadata (11 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.19) Collecting urllib3<3,>=1.26 (from requests->omero-py) Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Using cached portalocker-4.3.0-py3-none-any.whl (129 kB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 urllib3-2.7.0 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata Collecting omero-metadata Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-6r7wnspy/omero-metadata_300b63cfc0064e74873a8eb2141a3f70 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-6r7wnspy/omero-metadata_300b63cfc0064e74873a8eb2141a3f70 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 74e7e8ea7b58024ecc271c8b2b7c65a670a540a2 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) Collecting pandas<3,>=2 (from omero-metadata) Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) Using cached tzdata-2026.3-py2.py3-none-any.whl.metadata (1.4 kB) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.3.0) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.19) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB) Using cached tzdata-2026.3-py2.py3-none-any.whl (348 kB) Building wheels for collected packages: omero-metadata Building wheel for omero-metadata (pyproject.toml): started Building wheel for omero-metadata (pyproject.toml): finished with status 'done' Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=37838e878af8454d9934d1d582c2b20d706f52404527f568a190e46bf3166f74 Stored in directory: /tmp/pip-ephem-wheel-cache-t11g2eg9/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b Successfully built omero-metadata Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.3 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render Collecting omero-cli-render Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-yi7xh025/omero-cli-render_bfba6f2fc6b846e19d5dbd6e814be506 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-yi7xh025/omero-cli-render_bfba6f2fc6b846e19d5dbd6e814be506 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit adeef23a87e87aeed8442106b9738117c186fe85 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.3.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.19) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) Building wheels for collected packages: omero-cli-render Building wheel for omero-cli-render (pyproject.toml): started Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=50472a0bdb2709bb8c9db39fc180443e2467545c07f8be48e25ebb5d4b9d296d Stored in directory: /tmp/pip-ephem-wheel-cache-5bwbznqy/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee Successfully built omero-cli-render Installing collected packages: omero-cli-render Successfully installed omero-cli-render-0.8.2.dev0 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate Collecting omero-cli-duplicate Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-ejiixzta/omero-cli-duplicate_eda6cab3b736413aac6f8b63481ce54d Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-ejiixzta/omero-cli-duplicate_eda6cab3b736413aac6f8b63481ce54d Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 36ff46c599ab8da5748c1cba9866a719a3d05179 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.3.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.19) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) Building wheels for collected packages: omero-cli-duplicate Building wheel for omero-cli-duplicate (pyproject.toml): started Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=ce2373b69dd0692dbee0b394503e74708cf7832f5f4df74dbc5d9d6fc48f1990 Stored in directory: /tmp/pip-ephem-wheel-cache-e2d3z99r/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 Successfully built omero-cli-duplicate Installing collected packages: omero-cli-duplicate Successfully installed omero-cli-duplicate-0.4.1.dev0 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr Collecting omero-cli-zarr Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-maobryx1/omero-cli-zarr_a5a63635f8db4613b67ce8a2a54f77f1 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-maobryx1/omero-cli-zarr_a5a63635f8db4613b67ce8a2a54f77f1 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 84421e3e42c8b87180f84afca165a1f032bb8638 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB) Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB) Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Downloading click-8.5.0-py3-none-any.whl.metadata (2.6 kB) Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB) Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB) Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB) Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB) Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0) Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0) Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.4) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.3.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.3.0) Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached aiobotocore-3.9.0-py3-none-any.whl.metadata (30 kB) Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) Collecting botocore<1.43.57,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached botocore-1.43.56-py3-none-any.whl.metadata (5.6 kB) Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0) Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB) Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB) Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB) Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB) Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.57,>=1.43.3->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0) Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.19) Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB) Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB) Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached imageio-2.37.4-py3-none-any.whl.metadata (9.6 kB) Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB) Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB) Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB) Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.5.1) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22) Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB) Using cached dask-2026.8.0-py3-none-any.whl (1.5 MB) Downloading click-8.5.0-py3-none-any.whl (125 kB) Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB) Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB) Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB) Using cached pydantic-2.12.5-py3-none-any.whl (463 kB) Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) Using cached partd-1.4.2-py3-none-any.whl (18 kB) Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB) Using cached aiobotocore-3.9.0-py3-none-any.whl (100 kB) Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) Using cached botocore-1.43.56-py3-none-any.whl (15.4 MB) Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB) Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB) Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) Using cached attrs-26.1.0-py3-none-any.whl (67 kB) Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) Using cached imageio-2.37.4-py3-none-any.whl (318 kB) Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) Using cached toolz-1.1.0-py3-none-any.whl (58 kB) Using cached zarr-3.1.6-py3-none-any.whl (295 kB) Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) Using cached zipp-4.1.0-py3-none-any.whl (10 kB) Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) Building wheels for collected packages: omero-cli-zarr Building wheel for omero-cli-zarr (pyproject.toml): started Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev179+g84421e3-py3-none-any.whl size=39368 sha256=da1077070d1b16c67f364340a8c52a14d959cbe265a8162bad0d8b926d327a0e Stored in directory: /tmp/pip-ephem-wheel-cache-z_h6d2h8/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 Successfully built omero-cli-zarr Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr Attempting uninstall: pydantic-core Found existing installation: pydantic_core 2.46.4 Uninstalling pydantic_core-2.46.4: Successfully uninstalled pydantic_core-2.46.4 Attempting uninstall: pydantic Found existing installation: pydantic 2.13.4 Uninstalling pydantic-2.13.4: Successfully uninstalled pydantic-2.13.4 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev179+g84421e3 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 + pip install omero-certificates Collecting omero-certificates Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.3.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.19) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) Installing collected packages: omero-certificates Successfully installed omero-certificates-0.4.0 + for x in *.tar.gz + pip install -U omero_dropbox-5.7.1.dev0.tar.gz Processing ./omero_dropbox-5.7.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.3.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.19) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) Building wheels for collected packages: omero-dropbox Building wheel for omero-dropbox (pyproject.toml): started Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=2824116b4cf02f04eac3e4f2b3258e244d8e3f0dc6a0e25f1697be2d30712af7 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 Successfully built omero-dropbox Installing collected packages: omero-dropbox Successfully installed omero-dropbox-5.7.1.dev0 + for x in *.tar.gz + pip install -U omero_marshal-0.9.2.dev0.tar.gz Processing ./omero_marshal-0.9.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero_marshal Building wheel for omero_marshal (pyproject.toml): started Building wheel for omero_marshal (pyproject.toml): finished with status 'done' Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=69036e2c05d68871ec1a9e5730665c65f2a2cc946f08ef280a9c4e1abb33617b Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 Successfully built omero_marshal Installing collected packages: omero_marshal Successfully installed omero_marshal-0.9.2.dev0 + for x in *.tar.gz + pip install -U omero_py-5.23.1.dev0.tar.gz Processing ./omero_py-5.23.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.3.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.19) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) Building wheels for collected packages: omero-py Building wheel for omero-py (pyproject.toml): started Building wheel for omero-py (pyproject.toml): finished with status 'done' Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787095 sha256=1ba67c68f0dc19f00ab84783950d4c983ee3af0871b3feb00b56c4609099777e Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d Successfully built omero-py Installing collected packages: omero-py Attempting uninstall: omero-py Found existing installation: omero-py 5.23.0 Uninstalling omero-py-5.23.0: Successfully uninstalled omero-py-5.23.0 Successfully installed omero-py-5.23.1.dev0 + for x in *.tar.gz + pip install -U omero_scripts-5.10.1.dev0.tar.gz Processing ./omero_scripts-5.10.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero-scripts Building wheel for omero-scripts (pyproject.toml): started Building wheel for omero-scripts (pyproject.toml): finished with status 'done' Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=78bd1e775c6aa9fd53a75514df1dfef09681f60c33f261d7cb24a8a405c1fd76 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e Successfully built omero-scripts Installing collected packages: omero-scripts Successfully installed omero-scripts-5.10.1.dev0 + for x in *.tar.gz + pip install -U omero_web-5.33.1.dev0.tar.gz Processing ./omero_web-5.33.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (5.23.1.dev0) Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.1.dev0) Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.1.dev0) Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB) Collecting django-pipeline>=4.1.0 (from omero-web==5.33.1.dev0) Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) Collecting django-cors-headers==3.7.0 (from omero-web==5.33.1.dev0) Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) Collecting whitenoise>=5.3.0 (from omero-web==5.33.1.dev0) Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) Collecting gunicorn>=19.3 (from omero-web==5.33.1.dev0) Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB) Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (0.9.2.dev0) Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (12.3.0) Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (2026.3.post1) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (4.3.0) Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (26.3) Collecting importlib-resources (from omero-web==5.33.1.dev0) Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.1.dev0) Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.1.dev0) Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.1.dev0) (65.5.1) Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.1.dev0) Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.4.6) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.34.2) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.5.1) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.19) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (2026.7.22) Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) Using cached django-5.2.17-py3-none-any.whl (8.3 MB) Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB) Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) Using cached wheel-0.48.0-py3-none-any.whl (33 kB) Building wheels for collected packages: omero-web Building wheel for omero-web (pyproject.toml): started Building wheel for omero-web (pyproject.toml): finished with status 'done' Created wheel for omero-web: filename=omero_web-5.33.1.dev0-py3-none-any.whl size=2821635 sha256=c6c0d621a629aa2059dbb22c0d142b2fda705bd98789b5b2b9bf4866d9187b0d Stored in directory: /home/omero/.cache/pip/wheels/77/f6/23/fc9c2b5a287f0e430435deaa5ed7a3a49a9c9a8f56769f82c4 Successfully built omero-web Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.1.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. --2026-08-28 10:02:07-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.110.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 133661 (131K) [text/plain] Saving to: ‘Figure_To_Pdf.py’ 0K .......... .......... .......... .......... .......... 38% 2.90M 0s 50K .......... .......... .......... .......... .......... 76% 6.85M 0s 100K .......... .......... .......... 100% 3.93M=0.03s 2026-08-28 10:02:07 (4.04 MB/s) - ‘Figure_To_Pdf.py’ saved [133661/133661] + chmod 755 Figure_To_Pdf.py + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts + omero config set omero.db.name OMERO-server + omero config set omero.db.host pg + omero config set omero.db.user postgres + omero config set omero.data.dir /home/omero/omero-server-data + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% + omero config set omero.db.poolsize 25 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts + omero config set omero.security.trustStorePassword changeit + omero config set omero.mail.config true + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' + omero certificates OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 2026-08-28 10:03:21,557 [ omego.db] DEBUG dbcommand => upgrade 2026-08-28 10:03:21,557 [ omego.db] DEBUG dbhost => localhost 2026-08-28 10:03:21,558 [ omego.db] DEBUG dbname => OMERO-server 2026-08-28 10:03:21,558 [ omego.db] DEBUG dbpass => omero 2026-08-28 10:03:21,558 [ omego.db] DEBUG dbuser => omero 2026-08-28 10:03:21,558 [ omego.db] DEBUG rootpass => omero 2026-08-28 10:03:21,558 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 2026-08-28 10:03:21,558 [omego.extern] INFO Executing : omero version OMERO.py version: OMERO.server version: 5.6.3-676-ca157c25f4-ice36-b62 5.23.1.dev0 2026-08-28 10:03:26,222 [omego.extern] INFO Completed [4.664 s] 2026-08-28 10:03:26,222 [omego.extern] DEBUG Using omero CLI from omero 2026-08-28 10:03:26,222 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 2026-08-28 10:03:26,223 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-08-28 10:03:26,223 [omego.extern] INFO Executing : omero config get --show-password 2026-08-28 10:03:30,930 [omego.extern] INFO Completed [4.708 s] 2026-08-28 10:03:30,931 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-08-28 10:03:30,931 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 2026-08-28 10:03:31,110 [omego.extern] INFO Completed [0.180 s] 2026-08-28 10:03:31,110 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 2026-08-28 10:03:31,110 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 2026-08-28 10:03:31,110 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-08-28 10:03:31,110 [omego.extern] INFO Executing : omero config get --show-password 2026-08-28 10:03:35,652 [omego.extern] INFO Completed [4.541 s] 2026-08-28 10:03:35,652 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-08-28 10:03:35,652 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 2026-08-28 10:03:35,713 [omego.extern] INFO Completed [0.061 s] 2026-08-28 10:03:35,713 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.11") at port "5432".\n' 2026-08-28 10:03:35,713 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2026-08-28 10:03:35,713 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-08-28 10:03:35,713 [omego.extern] INFO Executing : omero config get --show-password 2026-08-28 10:03:40,357 [omego.extern] INFO Completed [4.644 s] 2026-08-28 10:03:40,357 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-08-28 10:03:40,357 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2026-08-28 10:03:40,973 [omego.extern] INFO Completed [0.616 s] 2026-08-28 10:03:40,973 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 2026-08-28 10:03:40,973 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 2026-08-28 10:03:41,026 [ omego.db] INFO Database is already at OMERO5.4__0 + export LANG=en_US.UTF-8 + LANG=en_US.UTF-8 + export LANGUAGE=en_US:en + LANGUAGE=en_US:en + export LC_ALL=en_US.UTF-8 + LC_ALL=en_US.UTF-8 + BUILD_ID=DONT_KILL_ME + omero admin start WARNING: lock files in /home/omero/omero-server-data ---------------------------------------- /home/omero/omero-server-data/.omero/repository/a3d421b1-9991-42f6-9eb8-867f8e8779af/.lock ---------------------------------------- You may want to stop all server processes and remove these files manually. Lock files can remain after an abrupt server outage and are especially frequent on remotely mounted filesystems like NFS. No descriptor given. Using etc/grid/default.xml Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry Waiting on startup. Use CTRL-C to exit + omero admin waitup Waiting on startup. Use CTRL-C to exit + omero admin diagnostics ================================================================================ OMERO Diagnostics (admin) ================================================================================ Commands: java -version 21.0.12 (/usr/bin/java) Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) Commands: psql --version 16.14 (/usr/bin/psql) Commands: openssl version 3.5.527 (/usr/bin/openssl) Component: OMERO.py 5.23.1.dev0 Component: OMERO.server 5.6.3-676-ca157c25f4-ice36-b62 Server: icegridnode running Server: Blitz-0 active (pid = 1348, enabled) Server: Indexer-0 active (pid = 1366, enabled) Server: OMERO.Glacier2 active (pid = 1371, enabled) Server: OMERO.IceStorm active (pid = 1398, enabled) Server: Processor-0 active (pid = 1387, enabled) Server: Tables-0 active (pid = 1396, enabled) Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists Log files: Blitz-0.log 32.4 KB errors=0 warnings=1 Log files: DropBox.log n/a Log files: FileServer.log n/a Log files: Indexer-0.log 2.6 KB Log files: MonitorServer.log n/a Log files: Processor-0.log 856 B Log files: Tables-0.log 1.1 KB Log files: TestDropBox.log n/a Log files: master.err empty Log files: master.out 30.7 KB Log files: Total size 0.07 MB Environment:OMERO_HOME=(unset) Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server Environment:OMERO_NODE=(unset) Environment:OMERO_MASTER=(unset) Environment:OMERO_USERDIR=(unset) Environment:OMERO_TMPDIR=(unset) Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Environment:PYTHONPATH=(unset) Environment:ICE_HOME=/opt/ice-3.6.5 Environment:LD_LIBRARY_PATH=(unset) Environment:DYLD_LIBRARY_PATH=(unset) OMERO SSL port:4064 OMERO TCP port:4063 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) JVM settings: Blitz-${index} -Xmx5007m JVM settings: Indexer-${index} -Xmx3338m JVM settings: PixelData-${index} -Xmx5007m JVM settings: Repository-${index} -Xmx3338m Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.0-rc3 4c6a6c7d8fb12449c8080808fd12bf95e996e398 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate Finished: SUCCESS