01:14:54 Started by upstream project "Trigger" build number 75 01:14:54 originally caused by: 01:14:54 Started by timer 01:14:54 Running as SYSTEM 01:14:54 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 01:14:54 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9840959289092539867.sh 01:14:54 + source /home/settings.env 01:14:54 ++ OMERO_DB_HOST=pg 01:14:54 ++ OMERO_DB_USER=postgres 01:14:54 ++ OMERO_DB_PASS= 01:14:54 ++ OMERO_ROOT_PASS=omero 01:14:54 ++ OMERO_DATA_DIR=/OMERO 01:14:54 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:14:54 + OMERO_DB_NAME=OMERO-server 01:14:54 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:14:54 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:14:54 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:14:54 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:14:54 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 01:14:54 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:14:54 ++ deactivate nondestructive 01:14:54 ++ '[' -n '' ']' 01:14:54 ++ '[' -n '' ']' 01:14:54 ++ hash -r 01:14:54 ++ '[' -n '' ']' 01:14:54 ++ unset VIRTUAL_ENV 01:14:54 ++ unset VIRTUAL_ENV_PROMPT 01:14:54 ++ '[' '!' nondestructive = nondestructive ']' 01:14:54 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:14:54 ++ export VIRTUAL_ENV 01:14:54 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:14:54 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:14:54 ++ export PATH 01:14:54 ++ '[' -n '' ']' 01:14:54 ++ '[' -z '' ']' 01:14:54 ++ _OLD_VIRTUAL_PS1= 01:14:54 ++ PS1='(.venv3) ' 01:14:54 ++ export PS1 01:14:54 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:14:54 ++ export VIRTUAL_ENV_PROMPT 01:14:54 ++ hash -r 01:14:54 + omero admin stop 01:15:07 Waiting on shutdown. Use CTRL-C to exit 01:15:07 .+ sleep 5 01:15:22 + deactivate 01:15:22 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:15:22 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:15:22 + export PATH 01:15:22 + unset _OLD_VIRTUAL_PATH 01:15:22 + '[' -n '' ']' 01:15:22 + hash -r 01:15:22 + '[' -n '' ']' 01:15:22 + unset VIRTUAL_ENV 01:15:22 + unset VIRTUAL_ENV_PROMPT 01:15:22 + '[' '!' '' = nondestructive ']' 01:15:22 + unset -f deactivate 01:15:22 + rm -rf /home/omero/workspace/OMERO-server/.venv3 01:17:48 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 01:18:10 + '[' false = true ']' 01:18:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 01:18:10 Skipping PURGE_DATA:CleanDbAndRepo 01:18:10 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 01:18:18 Copied 1 artifact from "OMERO-build" build number 64 01:18:19 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 55 01:18:19 Copied 2 artifacts from "OMERO-build-build" build number 66 01:18:19 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14155391564118407872.sh 01:18:19 + source /home/settings.env 01:18:19 ++ OMERO_DB_HOST=pg 01:18:19 ++ OMERO_DB_USER=postgres 01:18:19 ++ OMERO_DB_PASS= 01:18:19 ++ OMERO_ROOT_PASS=omero 01:18:19 ++ OMERO_DATA_DIR=/OMERO 01:18:19 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:18:19 + OMERO_DB_NAME=OMERO-server 01:18:19 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:18:19 + mkdir -p /home/omero/omero-server-data 01:18:19 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:18:19 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:18:19 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:18:19 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:18:19 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:18:19 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:18:19 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:18:19 ++ ls OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64.zip 01:18:19 + ZIP=OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64.zip 01:18:19 + '[' '!' -z '' ']' 01:18:19 + DIST=OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64 01:18:19 + unzip OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64.zip 01:18:19 Archive: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64.zip 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/blitz/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/grid/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/profiles/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/error/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/grid/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/luts/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/luts/janelia/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/luts/matplotlib/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/luts/ncsa_paledit/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/luts/seaborn/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/luts/wcif/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/omero/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/omero/analysis_scripts/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/omero/annotation_scripts/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/omero/export_scripts/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/omero/figure_scripts/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/omero/import_scripts/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/scripts/omero/util_scripts/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/server/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/share/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/share/licenses/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/misc/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__1/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__10/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__11/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__2/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__3/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__4/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__5/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__6/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__7/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__8/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3A__9/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3__4/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3__5/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3__6/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO3__7/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO4.1__0/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO4.2__0/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO4.2__0/t/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO4.3__0/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO4.4__0/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO4__0/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.0__0/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.1__1/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.2__0/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.3__0/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4DEV__1/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4DEV__2/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4DEV__3/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/var/ 01:18:19 creating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/var/tmp/ 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/LICENSE.txt 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/backup.cfg 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/blitz/mail-senders.example 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/blitz/mail-server.example 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/build.properties 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/env.bat 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/env.sh 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/hibernate.properties 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/ice.config 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/logback-cli.xml 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/logback-indexing-cli.xml 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/logback-indexing.xml 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/logback.xml 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/mime.types 01:18:19 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/node1.cfg 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/node2.cfg 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/omero.properties 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/profiles/psql 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/rollover.cfg 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/Windows.cfg 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/error/maintainance.html 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/grid/README 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/grid/default.xml 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/grid/templates.xml 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/grid/windefault.xml 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/ice.config 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/internal.cfg 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/master.cfg 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/templates/robot.template 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/etc/testdropbox.config 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/history.rst 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/OMEZarrReader.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/accessors-smart.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/activation.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/aggdesigner-algorithm.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/aircompressor.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/annotations.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/antlr.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/aopalliance.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/apache-client.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/apiguardian-api.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/arns.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/asm.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/auth.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/avatica-core.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/avatica-metrics.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/aws-core.jar 01:18:20 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/lib/client/aws-java-sdk-core.jar 01:18:20 inflating: 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inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO4__0/OMERO3A__11.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 01:18:37 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/psql-footer.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/psql-header.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/schema.sql 01:18:38 inflating: OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64/sql/psql/OMERO5.4__0/views.sql 01:18:38 + rm -f OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64.zip 01:18:38 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64 /home/omero/workspace/OMERO-server/OMERO.server 01:18:38 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:18:38 ++ deactivate nondestructive 01:18:38 ++ '[' -n '' ']' 01:18:38 ++ '[' -n '' ']' 01:18:38 ++ hash -r 01:18:38 ++ '[' -n '' ']' 01:18:38 ++ unset VIRTUAL_ENV 01:18:38 ++ unset VIRTUAL_ENV_PROMPT 01:18:38 ++ '[' '!' nondestructive = nondestructive ']' 01:18:38 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:18:38 ++ export VIRTUAL_ENV 01:18:38 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:18:38 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:18:38 ++ export PATH 01:18:38 ++ '[' -n '' ']' 01:18:38 ++ '[' -z '' ']' 01:18:38 ++ _OLD_VIRTUAL_PS1= 01:18:38 ++ PS1='(.venv3) ' 01:18:38 ++ export PS1 01:18:38 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:18:38 ++ export VIRTUAL_ENV_PROMPT 01:18:38 ++ hash -r 01:18:38 + pip install -U pip 01:18:39 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 01:18:39 Collecting pip 01:18:39 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 01:18:39 Installing collected packages: pip 01:18:39 Attempting uninstall: pip 01:18:39 Found existing installation: pip 22.3.1 01:18:40 Uninstalling pip-22.3.1: 01:18:40 Successfully uninstalled pip-22.3.1 01:18:55 Successfully installed pip-26.2.1 01:18:55 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:18:56 Collecting zeroc-ice==3.6.5 01:18:57 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:18:59 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.8 MB/s 0:00:02 01:18:59 Installing collected packages: zeroc-ice 01:19:03 Successfully installed zeroc-ice-3.6.5 01:19:03 + pip install markdown 01:19:04 Collecting markdown 01:19:04 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB) 01:19:04 Using cached markdown-3.10.3-py3-none-any.whl (110 kB) 01:19:04 Installing collected packages: markdown 01:19:05 Successfully installed markdown-3.10.3 01:19:05 + pip install reportlab 01:19:06 Collecting reportlab 01:19:06 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB) 01:19:06 Collecting pillow>=9.0.0 (from reportlab) 01:19:06 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 01:19:07 Collecting charset-normalizer (from reportlab) 01:19:07 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB) 01:19:07 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB) 01:19:07 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 01:19:07 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB) 01:19:07 Installing collected packages: pillow, charset-normalizer, reportlab 01:19:17 01:19:17 Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.1 01:19:17 + pip install omego 01:19:18 Collecting omego 01:19:18 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 01:19:18 Collecting future (from omego) 01:19:18 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 01:19:18 Collecting yaclifw>=0.1.1 (from omego) 01:19:18 Using cached yaclifw-0.2.0-py3-none-any.whl 01:19:18 Collecting six (from yaclifw>=0.1.1->omego) 01:19:18 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 01:19:18 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 01:19:19 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:19:19 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 01:19:19 Installing collected packages: six, future, yaclifw, omego 01:19:24 01:19:24 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 01:19:24 + pip install tables 01:19:25 Collecting tables 01:19:25 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 01:19:26 Collecting numpy>=1.20.0 (from tables) 01:19:26 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 01:19:26 Collecting numexpr>=2.6.2 (from tables) 01:19:26 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 01:19:26 Collecting packaging (from tables) 01:19:26 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 01:19:26 Collecting py-cpuinfo (from tables) 01:19:26 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 01:19:26 Collecting blosc2>=2.3.0 (from tables) 01:19:27 Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) 01:19:27 Collecting ndindex (from blosc2>=2.3.0->tables) 01:19:27 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 01:19:27 Collecting msgpack (from blosc2>=2.3.0->tables) 01:19:27 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 01:19:27 Collecting pydantic (from blosc2>=2.3.0->tables) 01:19:27 Using cached pydantic-2.13.5-py3-none-any.whl.metadata (110 kB) 01:19:27 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 01:19:27 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 01:19:27 Collecting rich (from blosc2>=2.3.0->tables) 01:19:27 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 01:19:28 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 01:19:28 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) 01:19:28 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 01:19:28 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB) 01:19:28 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 01:19:28 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 01:19:28 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 01:19:28 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 01:19:28 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 01:19:28 Using cached idna-3.19-py3-none-any.whl.metadata (9.2 kB) 01:19:28 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 01:19:28 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 01:19:28 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 01:19:28 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 01:19:28 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 01:19:28 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 01:19:29 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 01:19:29 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 01:19:29 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 01:19:29 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 01:19:29 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 01:19:29 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 01:19:30 Collecting pydantic-core==2.46.5 (from pydantic->blosc2>=2.3.0->tables) 01:19:30 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 01:19:30 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 01:19:30 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 01:19:30 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 01:19:30 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 01:19:30 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 01:19:30 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) 01:19:30 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 01:19:30 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 01:19:30 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 01:19:30 Using cached blosc2-4.11.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.5 MB) 01:19:30 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 01:19:30 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 01:19:31 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 01:19:31 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 01:19:31 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 01:19:31 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 01:19:31 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 01:19:31 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 01:19:31 Using cached anyio-4.14.2-py3-none-any.whl (125 kB) 01:19:31 Using cached idna-3.19-py3-none-any.whl (68 kB) 01:19:31 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 01:19:31 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 01:19:31 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (422 kB) 01:19:31 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 01:19:31 Using cached packaging-26.3-py3-none-any.whl (129 kB) 01:19:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 01:19:31 Using cached pydantic-2.13.5-py3-none-any.whl (472 kB) 01:19:31 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 01:19:32 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 01:19:32 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 01:19:32 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 01:19:32 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) 01:19:32 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 01:19:32 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 01:19:33 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) 01:19:33 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 01:20:21 01:20:21 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.11.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.19 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.2 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.5 pydantic-core-2.46.5 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.4 typing_extensions-4.16.0 01:20:21 + pip install jinja2 01:20:22 Collecting jinja2 01:20:22 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 01:20:22 Collecting MarkupSafe>=2.0 (from jinja2) 01:20:22 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 01:20:22 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 01:20:22 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 01:20:23 Installing collected packages: MarkupSafe, jinja2 01:20:23 01:20:23 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 01:20:24 + pip install omero-py 01:20:24 Collecting omero-py 01:20:25 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 01:20:25 Collecting appdirs (from omero-py) 01:20:25 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 01:20:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 01:20:25 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 01:20:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 01:20:25 Collecting PyYAML (from omero-py) 01:20:25 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 01:20:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:20:25 Collecting requests (from omero-py) 01:20:25 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 01:20:25 Collecting portalocker (from omero-py) 01:20:25 Using cached portalocker-4.3.0-py3-none-any.whl.metadata (11 kB) 01:20:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1) 01:20:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.19) 01:20:25 Collecting urllib3<3,>=1.26 (from requests->omero-py) 01:20:25 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) 01:20:25 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 01:20:25 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 01:20:25 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:20:25 Using cached portalocker-4.3.0-py3-none-any.whl (129 kB) 01:20:26 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 01:20:26 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 01:20:26 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 01:20:26 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 01:20:45 01:20:45 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 urllib3-2.7.0 01:20:45 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 01:20:46 Collecting omero-metadata 01:20:46 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-4_mxqdqg/omero-metadata_a7670f368a97430aaa4d5b8289b487ec 01:20:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-4_mxqdqg/omero-metadata_a7670f368a97430aaa4d5b8289b487ec 01:20:47 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 4970441bdd786a946c4f47c3d5879fca0188d4ff 01:20:47 Installing build dependencies: started 01:20:48 Installing build dependencies: finished with status 'done' 01:20:48 Getting requirements to build wheel: started 01:20:49 Getting requirements to build wheel: finished with status 'done' 01:20:49 Preparing metadata (pyproject.toml): started 01:20:49 Preparing metadata (pyproject.toml): finished with status 'done' 01:20:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 01:20:49 Collecting pandas<3,>=2 (from omero-metadata) 01:20:49 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 01:20:49 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 01:20:49 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 01:20:49 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 01:20:49 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 01:20:49 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB) 01:20:50 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 01:20:50 Using cached tzdata-2026.3-py2.py3-none-any.whl.metadata (1.4 kB) 01:20:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 01:20:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 01:20:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 01:20:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 01:20:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 01:20:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 01:20:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.3.0) 01:20:50 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 01:20:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1) 01:20:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.19) 01:20:50 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) 01:20:50 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 01:20:50 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 01:20:50 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 01:20:50 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB) 01:20:50 Using cached tzdata-2026.3-py2.py3-none-any.whl (348 kB) 01:20:50 Building wheels for collected packages: omero-metadata 01:20:50 Building wheel for omero-metadata (pyproject.toml): started 01:20:50 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 01:20:50 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=5cd0cccfc36a59705ad23ebf5d883b0b0609d4acaa89842b05401eecb80e6acd 01:20:50 Stored in directory: /tmp/pip-ephem-wheel-cache-2swplirn/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 01:20:50 Successfully built omero-metadata 01:20:50 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 01:21:40 01:21:40 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.3 01:21:40 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 01:21:41 Collecting omero-cli-render 01:21:41 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-be7yinf4/omero-cli-render_ca00a19693a74b6fb8da918ff7162ccf 01:21:41 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-be7yinf4/omero-cli-render_ca00a19693a74b6fb8da918ff7162ccf 01:21:42 Running command git checkout -b merge_ci --track origin/merge_ci 01:21:42 Switched to a new branch 'merge_ci' 01:21:42 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:21:42 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 0a1dc6d42629939c8272a623155eb2060cc7c19a 01:21:42 Installing build dependencies: started 01:21:43 Installing build dependencies: finished with status 'done' 01:21:43 Getting requirements to build wheel: started 01:21:44 Getting requirements to build wheel: finished with status 'done' 01:21:44 Preparing metadata (pyproject.toml): started 01:21:44 Preparing metadata (pyproject.toml): finished with status 'done' 01:21:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 01:21:44 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 01:21:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 01:21:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 01:21:44 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 01:21:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 01:21:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 01:21:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 01:21:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.3.0) 01:21:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1) 01:21:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.19) 01:21:44 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) 01:21:44 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 01:21:44 Building wheels for collected packages: omero-cli-render 01:21:44 Building wheel for omero-cli-render (pyproject.toml): started 01:21:44 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 01:21:44 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=a3bfe130dc2585c4648f641cd72e86fc401da0d61087c5afd236527880b24308 01:21:44 Stored in directory: /tmp/pip-ephem-wheel-cache-hradl4ur/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 01:21:44 Successfully built omero-cli-render 01:21:45 Installing collected packages: omero-cli-render 01:21:45 Successfully installed omero-cli-render-0.8.2.dev0 01:21:45 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 01:21:46 Collecting omero-cli-duplicate 01:21:46 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-vwcb0yxc/omero-cli-duplicate_86ecbf87ea8b49d0a2b4074ff3c4d60b 01:21:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-vwcb0yxc/omero-cli-duplicate_86ecbf87ea8b49d0a2b4074ff3c4d60b 01:21:47 Running command git checkout -b merge_ci --track origin/merge_ci 01:21:47 Switched to a new branch 'merge_ci' 01:21:47 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:21:47 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit fd2eafaf32f930442af3d00f5b91f2d8ed097e15 01:21:47 Installing build dependencies: started 01:21:48 Installing build dependencies: finished with status 'done' 01:21:48 Getting requirements to build wheel: started 01:21:49 Getting requirements to build wheel: finished with status 'done' 01:21:49 Preparing metadata (pyproject.toml): started 01:21:49 Preparing metadata (pyproject.toml): finished with status 'done' 01:21:49 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 01:21:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 01:21:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 01:21:49 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 01:21:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 01:21:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 01:21:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 01:21:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 01:21:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.3.0) 01:21:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1) 01:21:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.19) 01:21:49 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 01:21:49 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 01:21:49 Building wheels for collected packages: omero-cli-duplicate 01:21:49 Building wheel for omero-cli-duplicate (pyproject.toml): started 01:21:49 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 01:21:49 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=354f3a86a349a34e6f28b7a37958294aa6f04d8ab5c0069149032a9edce8e3a9 01:21:49 Stored in directory: /tmp/pip-ephem-wheel-cache-9q3qw0uz/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 01:21:49 Successfully built omero-cli-duplicate 01:21:49 Installing collected packages: omero-cli-duplicate 01:21:50 Successfully installed omero-cli-duplicate-0.4.1.dev0 01:21:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 01:21:50 Collecting omero-cli-zarr 01:21:50 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-gdi_b37b/omero-cli-zarr_ad76cea8f3d64801b722b7a736ccf6c7 01:21:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-gdi_b37b/omero-cli-zarr_ad76cea8f3d64801b722b7a736ccf6c7 01:21:51 Running command git checkout -b merge_ci --track origin/merge_ci 01:21:52 Switched to a new branch 'merge_ci' 01:21:52 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:21:52 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit d92fac89afe79f7567d5f5250e1306ff4a5f494b 01:21:52 Installing build dependencies: started 01:21:53 Installing build dependencies: finished with status 'done' 01:21:53 Getting requirements to build wheel: started 01:21:53 Getting requirements to build wheel: finished with status 'done' 01:21:53 Installing backend dependencies: started 01:21:55 Installing backend dependencies: finished with status 'done' 01:21:55 Preparing metadata (pyproject.toml): started 01:21:55 Preparing metadata (pyproject.toml): finished with status 'done' 01:21:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 01:21:56 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 01:21:56 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 01:21:56 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 01:21:56 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:21:56 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB) 01:21:56 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:21:56 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 01:21:56 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:21:56 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB) 01:21:57 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 01:21:57 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 01:21:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 01:21:57 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:21:57 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 01:21:57 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 01:21:57 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 01:21:58 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 01:21:58 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 01:21:58 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:21:58 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 01:21:58 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 01:21:58 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 01:21:58 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:21:58 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB) 01:21:58 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:21:58 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 01:21:58 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 01:21:58 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:21:58 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 01:21:58 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 01:21:58 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:21:58 Using cached importlib_metadata-9.0.1-py3-none-any.whl.metadata (4.5 kB) 01:21:59 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:21:59 Using cached s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB) 01:21:59 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:21:59 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB) 01:21:59 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 01:21:59 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB) 01:21:59 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 01:21:59 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) 01:21:59 Requirement already satisfied: annotated-types>=0.6.0 in 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(from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:00 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) 01:22:01 Collecting botocore<1.43.57,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:01 Using cached botocore-1.43.56-py3-none-any.whl.metadata (5.6 kB) 01:22:01 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:01 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) 01:22:01 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:01 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 01:22:01 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0) 01:22:02 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:02 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB) 01:22:02 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:02 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB) 01:22:02 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:02 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 01:22:02 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:02 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB) 01:22:02 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:02 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 01:22:02 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:02 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) 01:22:03 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 01:22:03 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB) 01:22:03 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.57,>=1.43.3->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0) 01:22:03 Requirement 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pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 01:22:04 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB) 01:22:04 Using cached aiobotocore-3.9.0-py3-none-any.whl (100 kB) 01:22:04 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 01:22:05 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 01:22:05 Using cached botocore-1.43.56-py3-none-any.whl (15.4 MB) 01:22:05 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 01:22:05 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 01:22:05 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB) 01:22:05 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB) 01:22:05 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 01:22:05 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 01:22:05 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 01:22:05 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 01:22:05 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) 01:22:05 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 01:22:05 Using cached imageio-2.37.4-py3-none-any.whl (318 kB) 01:22:05 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 01:22:05 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 01:22:05 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 01:22:05 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 01:22:05 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 01:22:05 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 01:22:05 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 01:22:05 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 01:22:05 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 01:22:05 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 01:22:06 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 01:22:06 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 01:22:06 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 01:22:06 Building wheels for collected packages: omero-cli-zarr 01:22:06 Building wheel for omero-cli-zarr (pyproject.toml): started 01:22:06 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 01:22:06 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev184+gd92fac8-py3-none-any.whl size=39540 sha256=ed5a38c6f56d86c137caf084cb287d1cc8992849f5d77b75142c78d07b33f95e 01:22:06 Stored in directory: /tmp/pip-ephem-wheel-cache-l7xhk4m4/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 01:22:06 Successfully built omero-cli-zarr 01:22:07 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 01:22:42 Attempting uninstall: pydantic-core 01:22:42 Found existing installation: pydantic_core 2.46.5 01:22:42 Uninstalling pydantic_core-2.46.5: 01:22:42 Successfully uninstalled pydantic_core-2.46.5 01:23:15 Attempting uninstall: pydantic 01:23:15 Found existing installation: pydantic 2.13.5 01:23:15 Uninstalling pydantic-2.13.5: 01:23:15 Successfully uninstalled pydantic-2.13.5 01:23:55 01:23:55 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev184+gd92fac8 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 01:23:56 + pip install omero-certificates 01:23:57 Collecting omero-certificates 01:23:57 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 01:23:57 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 01:23:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 01:23:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 01:23:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 01:23:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 01:23:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 01:23:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 01:23:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 01:23:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.3.0) 01:23:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1) 01:23:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.19) 01:23:57 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 01:23:57 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 01:23:57 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 01:23:57 Installing collected packages: omero-certificates 01:23:58 Successfully installed omero-certificates-0.4.0 01:23:58 + for x in *.tar.gz 01:23:58 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 01:23:58 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 01:23:58 Installing build dependencies: started 01:24:00 Installing build dependencies: finished with status 'done' 01:24:00 Getting requirements to build wheel: started 01:24:00 Getting requirements to build wheel: finished with status 'done' 01:24:00 Preparing metadata (pyproject.toml): started 01:24:00 Preparing metadata (pyproject.toml): finished with status 'done' 01:24:00 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 01:24:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 01:24:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 01:24:00 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 01:24:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 01:24:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 01:24:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 01:24:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 01:24:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.3.0) 01:24:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1) 01:24:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.19) 01:24:00 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 01:24:00 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 01:24:00 Building wheels for collected packages: omero-dropbox 01:24:01 Building wheel for omero-dropbox (pyproject.toml): started 01:24:01 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 01:24:01 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=810f0b0022a01c3b53322f12eb943a9bc41e1a800e71d1e0a10a3572060ddc56 01:24:01 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 01:24:01 Successfully built omero-dropbox 01:24:01 Installing collected packages: omero-dropbox 01:24:02 Successfully installed omero-dropbox-5.7.1.dev0 01:24:02 + for x in *.tar.gz 01:24:02 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 01:24:03 Processing ./omero_marshal-0.9.2.dev0.tar.gz 01:24:03 Installing build dependencies: started 01:24:04 Installing build dependencies: finished with status 'done' 01:24:04 Getting requirements to build wheel: started 01:24:04 Getting requirements to build wheel: finished with status 'done' 01:24:04 Preparing metadata (pyproject.toml): started 01:24:05 Preparing metadata (pyproject.toml): finished with status 'done' 01:24:05 Building wheels for collected packages: omero_marshal 01:24:05 Building wheel for omero_marshal (pyproject.toml): started 01:24:05 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 01:24:05 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=714d0bf89e565d675991c4a78a8be0af0c3176b7652197d7f32292b7392d8da4 01:24:05 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 01:24:05 Successfully built omero_marshal 01:24:05 Installing collected packages: omero_marshal 01:24:07 Successfully installed omero_marshal-0.9.2.dev0 01:24:08 + for x in *.tar.gz 01:24:08 + pip install -U omero_py-5.23.1.dev0.tar.gz 01:24:08 Processing ./omero_py-5.23.1.dev0.tar.gz 01:24:09 Installing build dependencies: started 01:24:10 Installing build dependencies: finished with status 'done' 01:24:10 Getting requirements to build wheel: started 01:24:10 Getting requirements to build wheel: finished with status 'done' 01:24:10 Preparing metadata (pyproject.toml): started 01:24:11 Preparing metadata (pyproject.toml): finished with status 'done' 01:24:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 01:24:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 01:24:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 01:24:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 01:24:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 01:24:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 01:24:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 01:24:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.3.0) 01:24:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1) 01:24:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.19) 01:24:11 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0) 01:24:11 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 01:24:11 Building wheels for collected packages: omero-py 01:24:11 Building wheel for omero-py (pyproject.toml): started 01:24:12 Building wheel for omero-py (pyproject.toml): finished with status 'done' 01:24:12 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786870 sha256=226477b82180573c01848fe08c99f4f496af227e736483feb19e5fab57ede9b4 01:24:12 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 01:24:12 Successfully built omero-py 01:24:12 Installing collected packages: omero-py 01:24:12 Attempting uninstall: omero-py 01:24:12 Found existing installation: omero-py 5.23.0 01:24:13 Uninstalling omero-py-5.23.0: 01:24:23 Successfully uninstalled omero-py-5.23.0 01:24:40 Successfully installed omero-py-5.23.1.dev0 01:24:40 + for x in *.tar.gz 01:24:40 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 01:24:41 Processing ./omero_scripts-5.10.1.dev0.tar.gz 01:24:41 Installing build dependencies: started 01:24:42 Installing build dependencies: finished with status 'done' 01:24:42 Getting requirements to build wheel: started 01:24:43 Getting requirements to build wheel: finished with status 'done' 01:24:43 Preparing metadata (pyproject.toml): started 01:24:43 Preparing metadata (pyproject.toml): finished with status 'done' 01:24:43 Building wheels for collected packages: omero-scripts 01:24:43 Building wheel for omero-scripts (pyproject.toml): started 01:24:43 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 01:24:43 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=980384d114146c55383237142cfc1b6188ab8db8cc2d9f53f0958c88fc7f66a9 01:24:43 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 01:24:43 Successfully built omero-scripts 01:24:44 Installing collected packages: omero-scripts 01:24:44 Successfully installed omero-scripts-5.10.1.dev0 01:24:45 + for x in *.tar.gz 01:24:45 + pip install -U omero_web-5.33.1.dev0.tar.gz 01:24:45 Processing ./omero_web-5.33.1.dev0.tar.gz 01:24:46 Installing build dependencies: started 01:24:47 Installing build dependencies: finished with status 'done' 01:24:47 Getting requirements to build wheel: started 01:24:47 Getting requirements to build wheel: finished with status 'done' 01:24:47 Preparing metadata (pyproject.toml): started 01:24:48 Preparing metadata (pyproject.toml): finished with status 'done' 01:24:48 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (5.23.1.dev0) 01:24:48 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.1.dev0) 01:24:48 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 01:24:48 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.1.dev0) 01:24:48 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB) 01:24:48 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.1.dev0) 01:24:48 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 01:24:48 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.1.dev0) 01:24:48 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 01:24:48 Collecting whitenoise>=5.3.0 (from omero-web==5.33.1.dev0) 01:24:48 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 01:24:49 Collecting gunicorn>=19.3 (from omero-web==5.33.1.dev0) 01:24:49 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB) 01:24:49 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (0.9.2.dev0) 01:24:49 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (12.3.0) 01:24:49 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (2026.3.post1) 01:24:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (4.3.0) 01:24:49 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (26.3) 01:24:49 Collecting importlib-resources (from omero-web==5.33.1.dev0) 01:24:49 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 01:24:49 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.1.dev0) 01:24:49 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 01:24:49 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.1.dev0) 01:24:49 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 01:24:49 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.1.dev0) (65.5.1) 01:24:49 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.1.dev0) 01:24:49 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 01:24:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (1.4.4) 01:24:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (1.0.0) 01:24:49 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.4.6) 01:24:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (6.0.3) 01:24:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.6.5) 01:24:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.34.2) 01:24:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.5.1) 01:24:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.19) 01:24:49 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.7.0) 01:24:49 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (2026.7.22) 01:24:49 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 01:24:49 Using cached django-5.2.17-py3-none-any.whl (8.3 MB) 01:24:49 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 01:24:49 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 01:24:49 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 01:24:49 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB) 01:24:49 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 01:24:49 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 01:24:49 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 01:24:49 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 01:24:49 Building wheels for collected packages: omero-web 01:24:49 Building wheel for omero-web (pyproject.toml): started 01:24:51 Building wheel for omero-web (pyproject.toml): finished with status 'done' 01:24:51 Created wheel for omero-web: filename=omero_web-5.33.1.dev0-py3-none-any.whl size=2821687 sha256=444fb85cc60f2e2b840d769c9308173bd23f679d6fe55cf72287594481279a78 01:24:51 Stored in directory: /home/omero/.cache/pip/wheels/77/f6/23/fc9c2b5a287f0e430435deaa5ed7a3a49a9c9a8f56769f82c4 01:24:51 Successfully built omero-web 01:24:51 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 01:25:57 01:25:57 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.1.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 01:25:57 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:25:57 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 01:25:57 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 01:25:57 --2026-08-29 01:25:57-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:25:57 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.108.133, ... 01:25:57 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. 01:25:57 HTTP request sent, awaiting response... 200 OK 01:25:57 Length: 134097 (131K) [text/plain] 01:25:57 Saving to: ‘Figure_To_Pdf.py’ 01:25:57 01:25:57 0K .......... .......... .......... .......... .......... 38% 3.04M 0s 01:25:57 50K .......... .......... .......... .......... .......... 76% 4.35M 0s 01:25:57 100K .......... .......... .......... 100% 23.9M=0.03s 01:25:57 01:25:57 2026-08-29 01:25:57 (4.48 MB/s) - ‘Figure_To_Pdf.py’ saved [134097/134097] 01:25:57 01:25:57 + chmod 755 Figure_To_Pdf.py 01:25:57 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 01:25:57 + omero config set omero.db.name OMERO-server 01:26:04 + omero config set omero.db.host pg 01:26:09 + omero config set omero.db.user postgres 01:26:15 + omero config set omero.data.dir /home/omero/omero-server-data 01:26:20 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 01:26:25 + omero config set omero.db.poolsize 25 01:26:30 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 01:26:36 + omero config set omero.security.trustStorePassword changeit 01:26:41 + omero config set omero.mail.config true 01:26:46 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 01:26:51 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' 01:26:56 + omero certificates 01:27:00 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 01:27:00 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 01:27:01 + '[' false = true ']' 01:27:01 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 01:27:01 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 01:27:01 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 01:27:01 2026-08-29 01:27:01,603 [ omego.db] DEBUG dbcommand => upgrade 01:27:01 2026-08-29 01:27:01,603 [ omego.db] DEBUG dbhost => localhost 01:27:01 2026-08-29 01:27:01,604 [ omego.db] DEBUG dbname => OMERO-server 01:27:01 2026-08-29 01:27:01,604 [ omego.db] DEBUG dbpass => omero 01:27:01 2026-08-29 01:27:01,604 [ omego.db] DEBUG dbuser => omero 01:27:01 2026-08-29 01:27:01,604 [ omego.db] DEBUG rootpass => omero 01:27:01 2026-08-29 01:27:01,604 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 01:27:01 2026-08-29 01:27:01,605 [omego.extern] INFO Executing : omero version 01:27:06 OMERO.py version: 01:27:06 OMERO.server version: 01:27:06 5.6.3-677-3ebb95c6db-ice36-b64 01:27:06 5.23.1.dev0 01:27:06 2026-08-29 01:27:06,709 [omego.extern] INFO Completed [5.104 s] 01:27:06 2026-08-29 01:27:06,709 [omego.extern] DEBUG Using omero CLI from omero 01:27:06 2026-08-29 01:27:06,709 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 01:27:06 2026-08-29 01:27:06,709 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:27:06 2026-08-29 01:27:06,709 [omego.extern] INFO Executing : omero config get --show-password 01:27:11 2026-08-29 01:27:11,415 [omego.extern] INFO Completed [4.706 s] 01:27:11 2026-08-29 01:27:11,415 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:27:11 2026-08-29 01:27:11,416 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 01:27:11 2026-08-29 01:27:11,423 [omego.extern] INFO Completed [0.007 s] 01:27:11 2026-08-29 01:27:11,423 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 01:27:11 2026-08-29 01:27:11,423 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 01:27:11 01:27:11 2026-08-29 01:27:11,423 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:27:11 2026-08-29 01:27:11,423 [omego.extern] INFO Executing : omero config get --show-password 01:27:16 2026-08-29 01:27:16,482 [omego.extern] INFO Completed [5.059 s] 01:27:16 2026-08-29 01:27:16,482 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:27:16 2026-08-29 01:27:16,483 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 01:27:16 2026-08-29 01:27:16,501 [omego.extern] INFO Completed [0.018 s] 01:27:16 2026-08-29 01:27:16,501 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.11") at port "5432".\n' 01:27:16 2026-08-29 01:27:16,501 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:27:16 2026-08-29 01:27:16,501 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:27:16 2026-08-29 01:27:16,501 [omego.extern] INFO Executing : omero config get --show-password 01:27:21 2026-08-29 01:27:21,660 [omego.extern] INFO Completed [5.159 s] 01:27:21 2026-08-29 01:27:21,660 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:27:21 2026-08-29 01:27:21,660 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:27:21 2026-08-29 01:27:21,686 [omego.extern] INFO Completed [0.025 s] 01:27:21 2026-08-29 01:27:21,686 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 01:27:21 2026-08-29 01:27:21,686 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 01:27:21 2026-08-29 01:27:21,731 [ omego.db] INFO Database is already at OMERO5.4__0 01:27:21 + export LANG=en_US.UTF-8 01:27:21 + LANG=en_US.UTF-8 01:27:21 + export LANGUAGE=en_US:en 01:27:21 + LANGUAGE=en_US:en 01:27:21 + export LC_ALL=en_US.UTF-8 01:27:21 + LC_ALL=en_US.UTF-8 01:27:21 + BUILD_ID=DONT_KILL_ME 01:27:21 + omero admin start 01:27:33 No descriptor given. Using etc/grid/default.xml 01:27:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 01:27:46 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 01:27:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 01:27:46 Waiting on startup. Use CTRL-C to exit 01:27:47 + omero admin waitup 01:27:54 Waiting on startup. Use CTRL-C to exit 01:27:54 + omero admin diagnostics 01:28:01 01:28:01 ================================================================================ 01:28:01 OMERO Diagnostics (admin) 01:28:01 ================================================================================ 01:28:01 01:28:01 Commands: java -version 21.0.12 (/usr/bin/java) 01:28:01 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 01:28:01 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 01:28:01 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 01:28:01 Commands: psql --version 16.14 (/usr/bin/psql) 01:28:01 Commands: openssl version 3.5.527 (/usr/bin/openssl) 01:28:01 01:28:01 Component: OMERO.py 5.23.1.dev0 01:28:01 Component: OMERO.server 5.6.3-677-3ebb95c6db-ice36-b64 01:28:01 01:28:01 Server: icegridnode running 01:28:01 Server: Blitz-0 active (pid = 6363, enabled) 01:28:01 Server: Indexer-0 active (pid = 6381, enabled) 01:28:01 Server: OMERO.Glacier2 active (pid = 6386, enabled) 01:28:01 Server: OMERO.IceStorm active (pid = 6416, enabled) 01:28:01 Server: Processor-0 active (pid = 6403, enabled) 01:28:01 Server: Tables-0 active (pid = 6412, enabled) 01:28:01 01:28:01 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 01:28:01 Log files: Blitz-0.log 32.3 KB errors=0 warnings=1 01:28:01 Log files: DropBox.log n/a 01:28:01 Log files: FileServer.log n/a 01:28:01 Log files: Indexer-0.log 2.6 KB 01:28:01 Log files: MonitorServer.log n/a 01:28:01 Log files: Processor-0.log 856 B 01:28:01 Log files: Tables-0.log 1.1 KB 01:28:01 Log files: TestDropBox.log n/a 01:28:01 Log files: master.err empty 01:28:01 Log files: master.out 30.7 KB 01:28:01 Log files: Total size 0.07 MB 01:28:01 01:28:01 01:28:01 Environment:OMERO_HOME=(unset) 01:28:01 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:28:01 Environment:OMERO_NODE=(unset) 01:28:01 Environment:OMERO_MASTER=(unset) 01:28:01 Environment:OMERO_USERDIR=(unset) 01:28:01 Environment:OMERO_TMPDIR=(unset) 01:28:01 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:28:01 Environment:PYTHONPATH=(unset) 01:28:01 Environment:ICE_HOME=/opt/ice-3.6.5 01:28:01 Environment:LD_LIBRARY_PATH=(unset) 01:28:01 Environment:DYLD_LIBRARY_PATH=(unset) 01:28:01 01:28:01 OMERO SSL port:4064 01:28:01 OMERO TCP port:4063 01:28:01 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 01:28:01 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 01:28:01 01:28:01 JVM settings: Blitz-${index} -Xmx5007m 01:28:01 JVM settings: Indexer-${index} -Xmx3338m 01:28:01 JVM settings: PixelData-${index} -Xmx5007m 01:28:01 JVM settings: Repository-${index} -Xmx3338m 01:28:01 01:28:01 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 01:28:01 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 01:28:01 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 01:28:01 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 01:28:01 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 01:28:01 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 01:28:01 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 01:28:01 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 01:28:01 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 01:28:02 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 01:28:02 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 01:28:02 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 01:28:02 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 01:28:02 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 01:28:02 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 01:28:02 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 01:28:02 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.0-rc3 4c6a6c7d8fb12449c8080808fd12bf95e996e398 01:28:02 + deactivate 01:28:02 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:28:02 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:28:02 + export PATH 01:28:02 + unset _OLD_VIRTUAL_PATH 01:28:02 + '[' -n '' ']' 01:28:02 + hash -r 01:28:02 + '[' -n '' ']' 01:28:02 + unset VIRTUAL_ENV 01:28:02 + unset VIRTUAL_ENV_PROMPT 01:28:02 + '[' '!' '' = nondestructive ']' 01:28:02 + unset -f deactivate 01:28:02 Finished: SUCCESS