13:45:03 Started by upstream project "Trigger" build number 88 13:45:03 originally caused by: 13:45:03 Started by timer 13:45:03 Running as SYSTEM 13:45:03 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 13:45:03 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7068512913414126871.sh 13:45:03 + source /home/settings.env 13:45:03 ++ OMERO_DB_HOST=pg 13:45:03 ++ OMERO_DB_USER=postgres 13:45:03 ++ OMERO_DB_PASS= 13:45:03 ++ OMERO_ROOT_PASS=omero 13:45:03 ++ OMERO_DATA_DIR=/OMERO 13:45:03 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:45:03 + OMERO_DB_NAME=OMERO-server 13:45:03 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 13:45:03 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:45:03 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:45:03 + OMERO_DATA_DIR=/home/omero/omero-server-data 13:45:03 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 13:45:03 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 13:45:03 ++ deactivate nondestructive 13:45:03 ++ '[' -n '' ']' 13:45:03 ++ '[' -n '' ']' 13:45:03 ++ hash -r 13:45:03 ++ '[' -n '' ']' 13:45:03 ++ unset VIRTUAL_ENV 13:45:03 ++ unset VIRTUAL_ENV_PROMPT 13:45:03 ++ '[' '!' nondestructive = nondestructive ']' 13:45:03 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 13:45:03 ++ export VIRTUAL_ENV 13:45:03 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:45:03 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:45:03 ++ export PATH 13:45:03 ++ '[' -n '' ']' 13:45:03 ++ '[' -z '' ']' 13:45:03 ++ _OLD_VIRTUAL_PS1= 13:45:03 ++ PS1='(.venv3) ' 13:45:03 ++ export PS1 13:45:03 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 13:45:03 ++ export VIRTUAL_ENV_PROMPT 13:45:03 ++ hash -r 13:45:03 + omero admin stop 13:45:16 Waiting on shutdown. Use CTRL-C to exit 13:45:16 .+ sleep 5 13:45:32 + deactivate 13:45:32 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 13:45:32 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:45:32 + export PATH 13:45:32 + unset _OLD_VIRTUAL_PATH 13:45:32 + '[' -n '' ']' 13:45:32 + hash -r 13:45:32 + '[' -n '' ']' 13:45:32 + unset VIRTUAL_ENV 13:45:32 + unset VIRTUAL_ENV_PROMPT 13:45:32 + '[' '!' '' = nondestructive ']' 13:45:32 + unset -f deactivate 13:45:32 + rm -rf /home/omero/workspace/OMERO-server/.venv3 13:48:37 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 13:49:06 + '[' false = true ']' 13:49:06 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 13:49:06 Skipping PURGE_DATA:CleanDbAndRepo 13:49:06 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 13:49:20 Copied 1 artifact from "OMERO-build" build number 71 13:49:21 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 62 13:49:21 Copied 2 artifacts from "OMERO-build-build" build number 73 13:49:21 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9927617812571429795.sh 13:49:21 + source /home/settings.env 13:49:21 ++ OMERO_DB_HOST=pg 13:49:21 ++ OMERO_DB_USER=postgres 13:49:21 ++ OMERO_DB_PASS= 13:49:21 ++ OMERO_ROOT_PASS=omero 13:49:21 ++ OMERO_DATA_DIR=/OMERO 13:49:21 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:49:21 + OMERO_DB_NAME=OMERO-server 13:49:21 + OMERO_DATA_DIR=/home/omero/omero-server-data 13:49:21 + mkdir -p /home/omero/omero-server-data 13:49:21 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 13:49:21 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:49:21 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:49:21 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 13:49:21 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 13:49:21 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 13:49:21 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 13:49:21 ++ ls OMERO.server-5.6.3-677-151707f7e0-ice36-b71.zip 13:49:21 + ZIP=OMERO.server-5.6.3-677-151707f7e0-ice36-b71.zip 13:49:21 + '[' '!' -z '' ']' 13:49:21 + DIST=OMERO.server-5.6.3-677-151707f7e0-ice36-b71 13:49:21 + unzip OMERO.server-5.6.3-677-151707f7e0-ice36-b71.zip 13:49:22 Archive: OMERO.server-5.6.3-677-151707f7e0-ice36-b71.zip 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/blitz/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/grid/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/profiles/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/error/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/grid/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/luts/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/luts/janelia/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/luts/matplotlib/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/luts/ncsa_paledit/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/luts/seaborn/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/luts/wcif/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/omero/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/omero/analysis_scripts/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/omero/annotation_scripts/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/omero/export_scripts/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/omero/figure_scripts/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/omero/import_scripts/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/scripts/omero/util_scripts/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/server/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/share/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/share/licenses/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/misc/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__1/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__10/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__11/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__2/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__3/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__4/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__5/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__6/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__7/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__8/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3A__9/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3__4/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3__5/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3__6/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO3__7/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO4.1__0/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO4.2__0/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO4.2__0/t/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO4.3__0/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO4.4__0/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO4__0/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.0__0/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.1__1/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.2__0/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.3__0/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4DEV__1/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4DEV__2/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4DEV__3/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/var/ 13:49:22 creating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/var/tmp/ 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/LICENSE.txt 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/backup.cfg 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/blitz/mail-senders.example 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/blitz/mail-server.example 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/build.properties 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/env.bat 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/env.sh 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/hibernate.properties 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/ice.config 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/logback-cli.xml 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/logback-indexing-cli.xml 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/logback-indexing.xml 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/logback.xml 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/mime.types 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/node1.cfg 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/node2.cfg 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/omero.properties 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/profiles/psql 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/rollover.cfg 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/Windows.cfg 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/error/maintainance.html 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/grid/README 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/grid/default.xml 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/grid/templates.xml 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/grid/windefault.xml 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/ice.config 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/internal.cfg 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/master.cfg 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/templates/robot.template 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/etc/testdropbox.config 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/history.rst 13:49:22 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/OMEZarrReader.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/accessors-smart.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/activation.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/aggdesigner-algorithm.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/aircompressor.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/annotations.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/antlr.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/aopalliance.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/apache-client.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/apiguardian-api.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/arns.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/asm.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/auth.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/avatica-core.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/avatica-metrics.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/aws-core.jar 13:49:23 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/lib/client/aws-java-sdk-core.jar 13:49:23 inflating: 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inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO4__0/OMERO3A__11.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 13:49:45 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 13:49:46 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 13:49:46 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 13:49:46 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 13:49:46 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 13:49:46 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/psql-footer.sql 13:49:46 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/psql-header.sql 13:49:46 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/schema.sql 13:49:46 inflating: OMERO.server-5.6.3-677-151707f7e0-ice36-b71/sql/psql/OMERO5.4__0/views.sql 13:49:46 + rm -f OMERO.server-5.6.3-677-151707f7e0-ice36-b71.zip 13:49:46 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-677-151707f7e0-ice36-b71 /home/omero/workspace/OMERO-server/OMERO.server 13:49:46 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 13:49:46 ++ deactivate nondestructive 13:49:46 ++ '[' -n '' ']' 13:49:46 ++ '[' -n '' ']' 13:49:46 ++ hash -r 13:49:46 ++ '[' -n '' ']' 13:49:46 ++ unset VIRTUAL_ENV 13:49:46 ++ unset VIRTUAL_ENV_PROMPT 13:49:46 ++ '[' '!' nondestructive = nondestructive ']' 13:49:46 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 13:49:46 ++ export VIRTUAL_ENV 13:49:46 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:49:46 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:49:46 ++ export PATH 13:49:46 ++ '[' -n '' ']' 13:49:46 ++ '[' -z '' ']' 13:49:46 ++ _OLD_VIRTUAL_PS1= 13:49:46 ++ PS1='(.venv3) ' 13:49:46 ++ export PS1 13:49:46 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 13:49:46 ++ export VIRTUAL_ENV_PROMPT 13:49:46 ++ hash -r 13:49:46 + pip install -U pip 13:49:47 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 13:49:48 Collecting pip 13:49:48 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 13:49:48 Installing collected packages: pip 13:49:48 Attempting uninstall: pip 13:49:48 Found existing installation: pip 22.3.1 13:49:49 Uninstalling pip-22.3.1: 13:49:49 Successfully uninstalled pip-22.3.1 13:50:09 Successfully installed pip-26.2.1 13:50:09 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 13:50:10 Collecting zeroc-ice==3.6.5 13:50:11 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 13:50:13 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.2 MB/s 0:00:02 13:50:13 Installing collected packages: zeroc-ice 13:50:18 Successfully installed zeroc-ice-3.6.5 13:50:18 + pip install markdown 13:50:19 Collecting markdown 13:50:19 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB) 13:50:19 Using cached markdown-3.10.3-py3-none-any.whl (110 kB) 13:50:19 Installing collected packages: markdown 13:50:20 Successfully installed markdown-3.10.3 13:50:20 + pip install reportlab 13:50:21 Collecting reportlab 13:50:21 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB) 13:50:21 Collecting pillow>=9.0.0 (from reportlab) 13:50:21 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 13:50:22 Collecting charset-normalizer (from reportlab) 13:50:22 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB) 13:50:22 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB) 13:50:22 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 13:50:22 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB) 13:50:22 Installing collected packages: pillow, charset-normalizer, reportlab 13:50:33 13:50:33 Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.1 13:50:33 + pip install omego 13:50:34 Collecting omego 13:50:34 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 13:50:35 Collecting future (from omego) 13:50:35 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 13:50:35 Collecting yaclifw>=0.1.1 (from omego) 13:50:35 Using cached yaclifw-0.2.0-py3-none-any.whl 13:50:35 Collecting six (from yaclifw>=0.1.1->omego) 13:50:35 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 13:50:35 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 13:50:35 Using cached future-1.0.0-py3-none-any.whl (491 kB) 13:50:35 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 13:50:35 Installing collected packages: six, future, yaclifw, omego 13:50:43 13:50:43 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 13:50:43 + pip install tables 13:50:44 Collecting tables 13:50:44 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 13:50:44 Collecting numpy>=1.20.0 (from tables) 13:50:44 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 13:50:45 Collecting numexpr>=2.6.2 (from tables) 13:50:45 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 13:50:45 Collecting packaging (from tables) 13:50:45 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 13:50:45 Collecting py-cpuinfo (from tables) 13:50:45 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 13:50:45 Collecting blosc2>=2.3.0 (from tables) 13:50:45 Using cached blosc2-4.12.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) 13:50:46 Collecting ndindex (from blosc2>=2.3.0->tables) 13:50:46 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 13:50:46 Collecting msgpack (from blosc2>=2.3.0->tables) 13:50:46 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 13:50:46 Collecting pydantic (from blosc2>=2.3.0->tables) 13:50:46 Using cached pydantic-2.13.5-py3-none-any.whl.metadata (110 kB) 13:50:46 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 13:50:46 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 13:50:46 Collecting rich (from blosc2>=2.3.0->tables) 13:50:46 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 13:50:47 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 13:50:47 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) 13:50:47 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 13:50:47 Using cached anyio-4.15.1-py3-none-any.whl.metadata (4.7 kB) 13:50:47 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 13:50:47 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 13:50:47 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 13:50:47 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 13:50:47 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 13:50:47 Using cached idna-3.19-py3-none-any.whl.metadata (9.2 kB) 13:50:48 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 13:50:48 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 13:50:48 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 13:50:48 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 13:50:48 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 13:50:48 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 13:50:48 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 13:50:48 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 13:50:48 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 13:50:48 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 13:50:48 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 13:50:48 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 13:50:49 Collecting pydantic-core==2.46.5 (from pydantic->blosc2>=2.3.0->tables) 13:50:49 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 13:50:49 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 13:50:49 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 13:50:49 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 13:50:50 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 13:50:50 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 13:50:50 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) 13:50:50 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 13:50:50 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 13:50:50 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 13:50:50 Using cached blosc2-4.12.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) 13:50:50 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 13:50:50 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 13:50:50 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 13:50:50 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 13:50:50 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 13:50:50 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 13:50:50 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 13:50:50 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 13:50:51 Using cached anyio-4.15.1-py3-none-any.whl (132 kB) 13:50:51 Using cached idna-3.19-py3-none-any.whl (68 kB) 13:50:51 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 13:50:51 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 13:50:51 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (422 kB) 13:50:51 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 13:50:51 Using cached packaging-26.3-py3-none-any.whl (129 kB) 13:50:51 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 13:50:51 Using cached pydantic-2.13.5-py3-none-any.whl (472 kB) 13:50:51 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 13:50:51 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 13:50:51 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 13:50:51 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 13:50:51 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) 13:50:51 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 13:50:51 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 13:50:51 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) 13:50:52 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 13:52:08 13:52:08 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.12.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.19 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.2 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.5 pydantic-core-2.46.5 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.4 typing_extensions-4.16.0 13:52:09 + pip install jinja2 13:52:10 Collecting jinja2 13:52:10 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 13:52:10 Collecting MarkupSafe>=2.0 (from jinja2) 13:52:10 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 13:52:10 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 13:52:10 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 13:52:10 Installing collected packages: MarkupSafe, jinja2 13:52:12 13:52:12 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 13:52:12 + pip install omero-py 13:52:13 Collecting omero-py 13:52:13 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 13:52:13 Collecting appdirs (from omero-py) 13:52:13 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 13:52:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 13:52:13 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 13:52:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 13:52:13 Collecting PyYAML (from omero-py) 13:52:13 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 13:52:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 13:52:13 Collecting requests (from omero-py) 13:52:13 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 13:52:13 Collecting portalocker (from omero-py) 13:52:14 Using cached portalocker-4.3.0-py3-none-any.whl.metadata (11 kB) 13:52:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1) 13:52:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.19) 13:52:14 Collecting urllib3<3,>=1.26 (from requests->omero-py) 13:52:14 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) 13:52:14 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 13:52:14 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 13:52:14 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 13:52:14 Using cached portalocker-4.3.0-py3-none-any.whl (129 kB) 13:52:14 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 13:52:14 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 13:52:14 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 13:52:14 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 13:52:39 13:52:39 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 urllib3-2.7.0 13:52:39 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 13:52:40 Collecting omero-metadata 13:52:40 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-f927fkgh/omero-metadata_7506f7350eed4d1bb10cb26c9f5416fc 13:52:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-f927fkgh/omero-metadata_7506f7350eed4d1bb10cb26c9f5416fc 13:52:41 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit b3acd4d26bf71191f48fc8691173544b2043978a 13:52:41 Installing build dependencies: started 13:52:43 Installing build dependencies: finished with status 'done' 13:52:43 Getting requirements to build wheel: started 13:52:43 Getting requirements to build wheel: finished with status 'done' 13:52:43 Preparing metadata (pyproject.toml): started 13:52:43 Preparing metadata (pyproject.toml): finished with status 'done' 13:52:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 13:52:44 Collecting pandas<3,>=2 (from omero-metadata) 13:52:44 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 13:52:44 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 13:52:44 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 13:52:44 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 13:52:44 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 13:52:44 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB) 13:52:44 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 13:52:44 Using cached tzdata-2026.3-py2.py3-none-any.whl.metadata (1.4 kB) 13:52:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 13:52:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 13:52:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 13:52:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 13:52:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 13:52:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 13:52:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.3.0) 13:52:44 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 13:52:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1) 13:52:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.19) 13:52:44 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) 13:52:44 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 13:52:44 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 13:52:44 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 13:52:44 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB) 13:52:44 Using cached tzdata-2026.3-py2.py3-none-any.whl (348 kB) 13:52:44 Building wheels for collected packages: omero-metadata 13:52:44 Building wheel for omero-metadata (pyproject.toml): started 13:52:45 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 13:52:45 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=aeb409e407c2ad6359fad87953e4add729583b5e3758d8dae0572cdff9d0ca9c 13:52:45 Stored in directory: /tmp/pip-ephem-wheel-cache-leg3m9xu/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 13:52:45 Successfully built omero-metadata 13:52:45 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 13:53:53 13:53:53 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.3 13:53:54 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 13:53:55 Collecting omero-cli-render 13:53:55 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-ifdhlnr1/omero-cli-render_21050d040f484590b4bc1489b2041aac 13:53:55 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-ifdhlnr1/omero-cli-render_21050d040f484590b4bc1489b2041aac 13:53:56 Running command git checkout -b merge_ci --track origin/merge_ci 13:53:56 Switched to a new branch 'merge_ci' 13:53:56 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:53:56 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit b773197a0adcfd28c1c3ca4a8a031ba3e6062106 13:53:56 Installing build dependencies: started 13:53:57 Installing build dependencies: finished with status 'done' 13:53:57 Getting requirements to build wheel: started 13:53:58 Getting requirements to build wheel: finished with status 'done' 13:53:58 Preparing metadata (pyproject.toml): started 13:53:58 Preparing metadata (pyproject.toml): finished with status 'done' 13:53:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 13:53:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 13:53:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 13:53:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 13:53:58 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 13:53:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 13:53:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 13:53:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 13:53:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.3.0) 13:53:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1) 13:53:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.19) 13:53:58 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) 13:53:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 13:53:58 Building wheels for collected packages: omero-cli-render 13:53:58 Building wheel for omero-cli-render (pyproject.toml): started 13:53:58 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 13:53:58 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=98bbba5bba2c7ede734b3816d0481baf83b0011c973d05bb004bf21f1efc7418 13:53:58 Stored in directory: /tmp/pip-ephem-wheel-cache-1onp1msw/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 13:53:58 Successfully built omero-cli-render 13:53:59 Installing collected packages: omero-cli-render 13:53:59 Successfully installed omero-cli-render-0.8.2.dev0 13:53:59 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 13:54:00 Collecting omero-cli-duplicate 13:54:00 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-oflirsij/omero-cli-duplicate_b612e7317f914d3da3f31effc224fbcb 13:54:00 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-oflirsij/omero-cli-duplicate_b612e7317f914d3da3f31effc224fbcb 13:54:01 Running command git checkout -b merge_ci --track origin/merge_ci 13:54:01 Switched to a new branch 'merge_ci' 13:54:01 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:54:01 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit a37057db8e44eb3d07d1093eb1d563d3eee8accd 13:54:01 Installing build dependencies: started 13:54:03 Installing build dependencies: finished with status 'done' 13:54:03 Getting requirements to build wheel: started 13:54:03 Getting requirements to build wheel: finished with status 'done' 13:54:03 Preparing metadata (pyproject.toml): started 13:54:03 Preparing metadata (pyproject.toml): finished with status 'done' 13:54:03 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 13:54:03 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 13:54:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 13:54:03 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 13:54:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 13:54:03 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 13:54:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 13:54:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 13:54:03 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.3.0) 13:54:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1) 13:54:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.19) 13:54:03 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 13:54:03 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 13:54:03 Building wheels for collected packages: omero-cli-duplicate 13:54:03 Building wheel for omero-cli-duplicate (pyproject.toml): started 13:54:04 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 13:54:04 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=a0231af8e5f493d84d81c579560513ccbf85d3e764a625a5cbcfb5cb00d26a5f 13:54:04 Stored in directory: /tmp/pip-ephem-wheel-cache-alvdqd60/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 13:54:04 Successfully built omero-cli-duplicate 13:54:04 Installing collected packages: omero-cli-duplicate 13:54:04 Successfully installed omero-cli-duplicate-0.4.1.dev0 13:54:04 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 13:54:05 Collecting omero-cli-zarr 13:54:05 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-jqzt0ysr/omero-cli-zarr_546ca711cc8e4e8c929411b53d0255bb 13:54:05 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-jqzt0ysr/omero-cli-zarr_546ca711cc8e4e8c929411b53d0255bb 13:54:06 Running command git checkout -b merge_ci --track origin/merge_ci 13:54:06 Switched to a new branch 'merge_ci' 13:54:06 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:54:06 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 66ed0b77f54159c99e646f9fc9c9f838a7f1f563 13:54:06 Installing build dependencies: started 13:54:08 Installing build dependencies: finished with status 'done' 13:54:08 Getting requirements to build wheel: started 13:54:08 Getting requirements to build wheel: finished with status 'done' 13:54:08 Installing backend dependencies: started 13:54:09 Installing backend dependencies: finished with status 'done' 13:54:09 Preparing metadata (pyproject.toml): started 13:54:10 Preparing metadata (pyproject.toml): finished with status 'done' 13:54:10 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 13:54:10 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 13:54:10 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 13:54:10 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 13:54:10 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:54:10 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB) 13:54:11 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:54:11 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 13:54:11 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 13:54:11 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB) 13:54:11 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 13:54:11 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 13:54:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 13:54:12 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:54:12 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 13:54:12 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 13:54:12 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 13:54:12 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 13:54:12 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 13:54:12 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:54:12 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 13:54:12 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 13:54:12 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 13:54:12 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:54:13 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB) 13:54:13 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:54:13 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 13:54:13 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 13:54:13 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:54:13 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 13:54:13 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 13:54:13 Collecting importlib_metadata>=4.13.0 (from 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13:54:20 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 13:54:20 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 13:54:20 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) 13:54:20 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 13:54:20 Using cached imageio-2.37.4-py3-none-any.whl (318 kB) 13:54:20 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 13:54:20 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 13:54:20 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 13:54:20 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 13:54:20 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 13:54:21 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 13:54:21 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 13:54:21 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 13:54:21 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 13:54:21 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 13:54:21 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 13:54:21 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 13:54:21 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 13:54:21 Building wheels for collected packages: omero-cli-zarr 13:54:21 Building wheel for omero-cli-zarr (pyproject.toml): started 13:54:22 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 13:54:22 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g66ed0b7-py3-none-any.whl size=39539 sha256=7560904980ddad0afc0d3d54c998d505fbc37b1e51ba5eb2047463123683f6d1 13:54:22 Stored in directory: /tmp/pip-ephem-wheel-cache-uzas3plk/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 13:54:22 Successfully built omero-cli-zarr 13:54:22 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 13:55:09 Attempting uninstall: pydantic-core 13:55:09 Found existing installation: pydantic_core 2.46.5 13:55:09 Uninstalling pydantic_core-2.46.5: 13:55:09 Successfully uninstalled pydantic_core-2.46.5 13:55:54 Attempting uninstall: pydantic 13:55:54 Found existing installation: pydantic 2.13.5 13:55:54 Uninstalling pydantic-2.13.5: 13:55:54 Successfully uninstalled pydantic-2.13.5 13:56:46 13:56:46 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g66ed0b7 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.4.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 13:56:46 + pip install omero-certificates 13:56:48 Collecting omero-certificates 13:56:48 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 13:56:48 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 13:56:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 13:56:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 13:56:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 13:56:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 13:56:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 13:56:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 13:56:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 13:56:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.3.0) 13:56:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1) 13:56:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.19) 13:56:48 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 13:56:48 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 13:56:48 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 13:56:48 Installing collected packages: omero-certificates 13:56:48 Successfully installed omero-certificates-0.4.0 13:56:48 + for x in *.tar.gz 13:56:48 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 13:56:49 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 13:56:49 Installing build dependencies: started 13:56:50 Installing build dependencies: finished with status 'done' 13:56:50 Getting requirements to build wheel: started 13:56:51 Getting requirements to build wheel: finished with status 'done' 13:56:51 Preparing metadata (pyproject.toml): started 13:56:51 Preparing metadata (pyproject.toml): finished with status 'done' 13:56:51 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 13:56:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 13:56:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 13:56:51 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 13:56:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 13:56:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 13:56:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 13:56:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 13:56:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.3.0) 13:56:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1) 13:56:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.19) 13:56:51 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 13:56:51 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 13:56:51 Building wheels for collected packages: omero-dropbox 13:56:51 Building wheel for omero-dropbox (pyproject.toml): started 13:56:51 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 13:56:51 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=f3fb83a4e6f077fd357f67c05e1070ebe2b5e010f1a3fd5581fa2f6eb268c730 13:56:51 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 13:56:51 Successfully built omero-dropbox 13:56:52 Installing collected packages: omero-dropbox 13:56:52 Successfully installed omero-dropbox-5.7.1.dev0 13:56:52 + for x in *.tar.gz 13:56:52 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 13:56:53 Processing ./omero_marshal-0.9.2.dev0.tar.gz 13:56:53 Installing build dependencies: started 13:56:54 Installing build dependencies: finished with status 'done' 13:56:54 Getting requirements to build wheel: started 13:56:55 Getting requirements to build wheel: finished with status 'done' 13:56:55 Preparing metadata (pyproject.toml): started 13:56:55 Preparing metadata (pyproject.toml): finished with status 'done' 13:56:55 Building wheels for collected packages: omero_marshal 13:56:55 Building wheel for omero_marshal (pyproject.toml): started 13:56:55 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 13:56:55 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=3c50ce8ffc2e637c29bd036d3a90232808393042f29b0f537f79887f91f71652 13:56:55 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 13:56:55 Successfully built omero_marshal 13:56:56 Installing collected packages: omero_marshal 13:56:59 Successfully installed omero_marshal-0.9.2.dev0 13:56:59 + for x in *.tar.gz 13:56:59 + pip install -U omero_py-5.23.1.dev0.tar.gz 13:57:00 Processing ./omero_py-5.23.1.dev0.tar.gz 13:57:00 Installing build dependencies: started 13:57:01 Installing build dependencies: finished with status 'done' 13:57:01 Getting requirements to build wheel: started 13:57:02 Getting requirements to build wheel: finished with status 'done' 13:57:02 Preparing metadata (pyproject.toml): started 13:57:02 Preparing metadata (pyproject.toml): finished with status 'done' 13:57:02 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 13:57:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 13:57:02 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 13:57:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 13:57:02 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 13:57:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 13:57:02 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 13:57:02 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.3.0) 13:57:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1) 13:57:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.19) 13:57:02 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0) 13:57:02 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 13:57:02 Building wheels for collected packages: omero-py 13:57:02 Building wheel for omero-py (pyproject.toml): started 13:57:03 Building wheel for omero-py (pyproject.toml): finished with status 'done' 13:57:03 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787190 sha256=6afe57527390e44e035cfab7aa3c8e0c2a469e7b09381fc4ccaf4dcce98fe60f 13:57:03 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 13:57:03 Successfully built omero-py 13:57:03 Installing collected packages: omero-py 13:57:03 Attempting uninstall: omero-py 13:57:03 Found existing installation: omero-py 5.23.0 13:57:04 Uninstalling omero-py-5.23.0: 13:57:18 Successfully uninstalled omero-py-5.23.0 13:57:37 Successfully installed omero-py-5.23.1.dev0 13:57:37 + for x in *.tar.gz 13:57:37 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 13:57:38 Processing ./omero_scripts-5.10.1.dev0.tar.gz 13:57:38 Installing build dependencies: started 13:57:40 Installing build dependencies: finished with status 'done' 13:57:40 Getting requirements to build wheel: started 13:57:40 Getting requirements to build wheel: finished with status 'done' 13:57:40 Preparing metadata (pyproject.toml): started 13:57:40 Preparing metadata (pyproject.toml): finished with status 'done' 13:57:40 Building wheels for collected packages: omero-scripts 13:57:40 Building wheel for omero-scripts (pyproject.toml): started 13:57:41 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 13:57:41 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=4c1b89b8c12c8ac71bb51351d055420602d017034b7611e5d1b9c5790eba0d7c 13:57:41 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 13:57:41 Successfully built omero-scripts 13:57:41 Installing collected packages: omero-scripts 13:57:42 Successfully installed omero-scripts-5.10.1.dev0 13:57:42 + for x in *.tar.gz 13:57:42 + pip install -U omero_web-5.33.1.dev0.tar.gz 13:57:43 Processing ./omero_web-5.33.1.dev0.tar.gz 13:57:43 Installing build dependencies: started 13:57:44 Installing build dependencies: finished with status 'done' 13:57:44 Getting requirements to build wheel: started 13:57:44 Getting requirements to build wheel: finished with status 'done' 13:57:44 Preparing metadata (pyproject.toml): started 13:57:45 Preparing metadata (pyproject.toml): finished with status 'done' 13:57:45 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (5.23.1.dev0) 13:57:45 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.1.dev0) 13:57:45 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 13:57:45 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.1.dev0) 13:57:45 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB) 13:57:45 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.1.dev0) 13:57:45 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 13:57:45 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.1.dev0) 13:57:45 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 13:57:46 Collecting whitenoise>=5.3.0 (from omero-web==5.33.1.dev0) 13:57:46 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 13:57:46 Collecting gunicorn>=19.3 (from omero-web==5.33.1.dev0) 13:57:46 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB) 13:57:46 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (0.9.2.dev0) 13:57:46 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (12.3.0) 13:57:46 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (2026.3.post1) 13:57:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (4.3.0) 13:57:46 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (26.3) 13:57:46 Collecting importlib-resources (from omero-web==5.33.1.dev0) 13:57:46 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 13:57:46 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.1.dev0) 13:57:46 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 13:57:46 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.1.dev0) 13:57:46 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 13:57:46 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.1.dev0) (65.5.1) 13:57:46 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.1.dev0) 13:57:46 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 13:57:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (1.4.4) 13:57:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (1.0.0) 13:57:46 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.4.6) 13:57:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (6.0.3) 13:57:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.6.5) 13:57:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.34.2) 13:57:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.5.1) 13:57:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.19) 13:57:46 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.7.0) 13:57:46 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (2026.7.22) 13:57:46 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 13:57:46 Using cached django-5.2.17-py3-none-any.whl (8.3 MB) 13:57:46 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 13:57:46 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 13:57:46 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 13:57:47 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB) 13:57:47 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 13:57:47 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 13:57:47 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 13:57:47 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 13:57:47 Building wheels for collected packages: omero-web 13:57:47 Building wheel for omero-web (pyproject.toml): started 13:57:48 Building wheel for omero-web (pyproject.toml): finished with status 'done' 13:57:48 Created wheel for omero-web: filename=omero_web-5.33.1.dev0-py3-none-any.whl size=2821687 sha256=ef2a09cd02d076e7bfa030d7ca7e0e3db4e53e53b3b9caa9d49005dea5e3bfc1 13:57:48 Stored in directory: /home/omero/.cache/pip/wheels/77/f6/23/fc9c2b5a287f0e430435deaa5ed7a3a49a9c9a8f56769f82c4 13:57:48 Successfully built omero-web 13:57:48 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 13:59:06 13:59:06 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.1.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 13:59:06 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 13:59:06 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 13:59:06 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 13:59:06 --2026-09-07 13:59:06-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 13:59:07 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.109.133, 185.199.110.133, ... 13:59:07 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 13:59:07 HTTP request sent, awaiting response... 200 OK 13:59:07 Length: 133661 (131K) [text/plain] 13:59:07 Saving to: ‘Figure_To_Pdf.py’ 13:59:07 13:59:07 0K .......... .......... .......... .......... .......... 38% 3.12M 0s 13:59:07 50K .......... .......... .......... .......... .......... 76% 4.16M 0s 13:59:07 100K .......... .......... .......... 100% 6.73M=0.03s 13:59:07 13:59:07 2026-09-07 13:59:07 (4.00 MB/s) - ‘Figure_To_Pdf.py’ saved [133661/133661] 13:59:07 13:59:07 + chmod 755 Figure_To_Pdf.py 13:59:07 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 13:59:07 + omero config set omero.db.name OMERO-server 13:59:14 + omero config set omero.db.host pg 13:59:19 + omero config set omero.db.user postgres 13:59:23 + omero config set omero.data.dir /home/omero/omero-server-data 13:59:28 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 13:59:32 + omero config set omero.db.poolsize 25 13:59:37 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 13:59:42 + omero config set omero.security.trustStorePassword changeit 13:59:46 + omero config set omero.mail.config true 13:59:51 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 13:59:56 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' 14:00:00 + omero certificates 14:00:04 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 14:00:04 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 14:00:05 + '[' false = true ']' 14:00:05 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 14:00:05 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 14:00:05 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 14:00:05 2026-09-07 14:00:05,541 [ omego.db] DEBUG dbcommand => upgrade 14:00:05 2026-09-07 14:00:05,541 [ omego.db] DEBUG dbhost => localhost 14:00:05 2026-09-07 14:00:05,542 [ omego.db] DEBUG dbname => OMERO-server 14:00:05 2026-09-07 14:00:05,542 [ omego.db] DEBUG dbpass => omero 14:00:05 2026-09-07 14:00:05,543 [ omego.db] DEBUG dbuser => omero 14:00:05 2026-09-07 14:00:05,543 [ omego.db] DEBUG rootpass => omero 14:00:05 2026-09-07 14:00:05,543 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 14:00:05 2026-09-07 14:00:05,544 [omego.extern] INFO Executing : omero version 14:00:09 OMERO.py version: 14:00:10 OMERO.server version: 14:00:10 5.6.3-677-151707f7e0-ice36-b71 14:00:10 5.23.1.dev0 14:00:10 2026-09-07 14:00:10,448 [omego.extern] INFO Completed [4.904 s] 14:00:10 2026-09-07 14:00:10,448 [omego.extern] DEBUG Using omero CLI from omero 14:00:10 2026-09-07 14:00:10,448 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 14:00:10 2026-09-07 14:00:10,448 [omego.extern] INFO Running [current environment]: omero config get --show-password 14:00:10 2026-09-07 14:00:10,448 [omego.extern] INFO Executing : omero config get --show-password 14:00:15 2026-09-07 14:00:15,156 [omego.extern] INFO Completed [4.708 s] 14:00:15 2026-09-07 14:00:15,156 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 14:00:15 2026-09-07 14:00:15,156 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 14:00:15 2026-09-07 14:00:15,203 [omego.extern] INFO Completed [0.047 s] 14:00:15 2026-09-07 14:00:15,203 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 14:00:15 2026-09-07 14:00:15,203 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 14:00:15 14:00:15 2026-09-07 14:00:15,203 [omego.extern] INFO Running [current environment]: omero config get --show-password 14:00:15 2026-09-07 14:00:15,203 [omego.extern] INFO Executing : omero config get --show-password 14:00:19 2026-09-07 14:00:19,808 [omego.extern] INFO Completed [4.605 s] 14:00:19 2026-09-07 14:00:19,808 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 14:00:19 2026-09-07 14:00:19,808 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 14:00:19 2026-09-07 14:00:19,829 [omego.extern] INFO Completed [0.021 s] 14:00:19 2026-09-07 14:00:19,829 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n' 14:00:19 2026-09-07 14:00:19,829 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 14:00:19 2026-09-07 14:00:19,829 [omego.extern] INFO Running [current environment]: omero config get --show-password 14:00:19 2026-09-07 14:00:19,829 [omego.extern] INFO Executing : omero config get --show-password 14:00:24 2026-09-07 14:00:24,536 [omego.extern] INFO Completed [4.707 s] 14:00:24 2026-09-07 14:00:24,536 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 14:00:24 2026-09-07 14:00:24,536 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 14:00:24 2026-09-07 14:00:24,716 [omego.extern] INFO Completed [0.180 s] 14:00:24 2026-09-07 14:00:24,717 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 14:00:24 2026-09-07 14:00:24,717 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 14:00:24 2026-09-07 14:00:24,986 [ omego.db] INFO Database is already at OMERO5.4__0 14:00:25 + export LANG=en_US.UTF-8 14:00:25 + LANG=en_US.UTF-8 14:00:25 + export LANGUAGE=en_US:en 14:00:25 + LANGUAGE=en_US:en 14:00:25 + export LC_ALL=en_US.UTF-8 14:00:25 + LC_ALL=en_US.UTF-8 14:00:25 + BUILD_ID=DONT_KILL_ME 14:00:25 + omero admin start 14:00:42 No descriptor given. Using etc/grid/default.xml 14:01:05 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 14:01:05 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 14:01:05 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 14:01:05 Waiting on startup. Use CTRL-C to exit 14:01:06 + omero admin waitup 14:01:11 Waiting on startup. Use CTRL-C to exit 14:01:11 + omero admin diagnostics 14:01:16 14:01:16 ================================================================================ 14:01:16 OMERO Diagnostics (admin) 14:01:16 ================================================================================ 14:01:16 14:01:16 Commands: java -version 21.0.12 (/usr/bin/java) 14:01:16 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 14:01:16 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 14:01:16 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 14:01:16 Commands: psql --version 16.14 (/usr/bin/psql) 14:01:16 Commands: openssl version 3.5.527 (/usr/bin/openssl) 14:01:16 14:01:16 Component: OMERO.py 5.23.1.dev0 14:01:16 Component: OMERO.server 5.6.3-677-151707f7e0-ice36-b71 14:01:16 14:01:16 Server: icegridnode running 14:01:16 Server: Blitz-0 active (pid = 11535, enabled) 14:01:16 Server: Indexer-0 active (pid = 11554, enabled) 14:01:16 Server: OMERO.Glacier2 active (pid = 11559, enabled) 14:01:16 Server: OMERO.IceStorm active (pid = 11588, enabled) 14:01:16 Server: Processor-0 active (pid = 11577, enabled) 14:01:16 Server: Tables-0 active (pid = 11586, enabled) 14:01:16 14:01:16 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 14:01:16 Log files: Blitz-0.log 32.4 KB errors=1 warnings=0 14:01:16 Log files: DropBox.log n/a 14:01:16 Log files: FileServer.log n/a 14:01:16 Log files: Indexer-0.log 2.6 KB 14:01:16 Log files: MonitorServer.log n/a 14:01:16 Log files: Processor-0.log 856 B 14:01:16 Log files: Tables-0.log 1.1 KB 14:01:16 Log files: TestDropBox.log n/a 14:01:16 Log files: master.err empty 14:01:16 Log files: master.out 30.7 KB 14:01:16 Log files: Total size 0.07 MB 14:01:16 14:01:16 14:01:16 Environment:OMERO_HOME=(unset) 14:01:16 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 14:01:16 Environment:OMERO_NODE=(unset) 14:01:16 Environment:OMERO_MASTER=(unset) 14:01:16 Environment:OMERO_USERDIR=(unset) 14:01:16 Environment:OMERO_TMPDIR=(unset) 14:01:16 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:01:16 Environment:PYTHONPATH=(unset) 14:01:16 Environment:ICE_HOME=/opt/ice-3.6.5 14:01:16 Environment:LD_LIBRARY_PATH=(unset) 14:01:16 Environment:DYLD_LIBRARY_PATH=(unset) 14:01:16 14:01:16 OMERO SSL port:4064 14:01:16 OMERO TCP port:4063 14:01:16 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 14:01:17 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 14:01:17 14:01:17 JVM settings: Blitz-${index} -Xmx5007m 14:01:17 JVM settings: Indexer-${index} -Xmx3338m 14:01:17 JVM settings: PixelData-${index} -Xmx5007m 14:01:17 JVM settings: Repository-${index} -Xmx3338m 14:01:17 14:01:17 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 14:01:17 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 14:01:17 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 14:01:17 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 14:01:17 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 14:01:17 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 14:01:17 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 14:01:17 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 14:01:17 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 14:01:17 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 14:01:17 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 14:01:17 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 14:01:17 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 14:01:17 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 14:01:17 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 14:01:17 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 14:01:17 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.0-rc3 4c6a6c7d8fb12449c8080808fd12bf95e996e398 14:01:17 + deactivate 14:01:17 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 14:01:17 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:01:17 + export PATH 14:01:17 + unset _OLD_VIRTUAL_PATH 14:01:17 + '[' -n '' ']' 14:01:17 + hash -r 14:01:17 + '[' -n '' ']' 14:01:17 + unset VIRTUAL_ENV 14:01:17 + unset VIRTUAL_ENV_PROMPT 14:01:17 + '[' '!' '' = nondestructive ']' 14:01:17 + unset -f deactivate 14:01:18 Finished: SUCCESS