23:52:15 Started by upstream project "Trigger" build number 111 23:52:15 originally caused by: 23:52:15 Started by timer 23:52:15 Running as SYSTEM 23:52:15 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 23:52:15 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12264198276287172945.sh 23:52:16 + source /home/settings.env 23:52:16 ++ OMERO_DB_HOST=pg 23:52:16 ++ OMERO_DB_USER=postgres 23:52:16 ++ OMERO_DB_PASS= 23:52:16 ++ OMERO_ROOT_PASS=omero 23:52:16 ++ OMERO_DATA_DIR=/OMERO 23:52:16 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 23:52:16 + OMERO_DB_NAME=OMERO-server 23:52:16 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 23:52:16 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:52:16 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:52:16 + OMERO_DATA_DIR=/home/omero/omero-server-data 23:52:16 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 23:52:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 23:52:16 ++ deactivate nondestructive 23:52:16 ++ '[' -n '' ']' 23:52:16 ++ '[' -n '' ']' 23:52:16 ++ hash -r 23:52:16 ++ '[' -n '' ']' 23:52:16 ++ unset VIRTUAL_ENV 23:52:16 ++ unset VIRTUAL_ENV_PROMPT 23:52:16 ++ '[' '!' nondestructive = nondestructive ']' 23:52:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 23:52:16 ++ export VIRTUAL_ENV 23:52:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:52:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:52:16 ++ export PATH 23:52:16 ++ '[' -n '' ']' 23:52:16 ++ '[' -z '' ']' 23:52:16 ++ _OLD_VIRTUAL_PS1= 23:52:16 ++ PS1='(.venv3) ' 23:52:16 ++ export PS1 23:52:16 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 23:52:16 ++ export VIRTUAL_ENV_PROMPT 23:52:16 ++ hash -r 23:52:16 + omero admin stop 23:52:47 Waiting on shutdown. Use CTRL-C to exit 23:52:47 .+ sleep 5 23:53:02 + deactivate 23:53:02 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 23:53:02 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:53:02 + export PATH 23:53:02 + unset _OLD_VIRTUAL_PATH 23:53:02 + '[' -n '' ']' 23:53:02 + hash -r 23:53:02 + '[' -n '' ']' 23:53:02 + unset VIRTUAL_ENV 23:53:02 + unset VIRTUAL_ENV_PROMPT 23:53:02 + '[' '!' '' = nondestructive ']' 23:53:02 + unset -f deactivate 23:53:02 + rm -rf /home/omero/workspace/OMERO-server/.venv3 23:55:47 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 23:56:08 + '[' false = true ']' 23:56:08 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 23:56:08 Skipping PURGE_DATA:CleanDbAndRepo 23:56:08 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 23:56:18 Copied 1 artifact from "OMERO-build" build number 90 23:56:19 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 81 23:56:19 Copied 2 artifacts from "OMERO-build-build" build number 92 23:56:19 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9554435077720461457.sh 23:56:19 + source /home/settings.env 23:56:19 ++ OMERO_DB_HOST=pg 23:56:19 ++ OMERO_DB_USER=postgres 23:56:19 ++ OMERO_DB_PASS= 23:56:19 ++ OMERO_ROOT_PASS=omero 23:56:19 ++ OMERO_DATA_DIR=/OMERO 23:56:19 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 23:56:19 + OMERO_DB_NAME=OMERO-server 23:56:19 + OMERO_DATA_DIR=/home/omero/omero-server-data 23:56:19 + mkdir -p /home/omero/omero-server-data 23:56:19 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 23:56:19 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:56:19 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:56:19 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 23:56:19 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 23:56:19 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 23:56:19 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 23:56:19 ++ ls OMERO.server-5.6.3-687-b09aa0614c-ice36-b90.zip 23:56:19 + ZIP=OMERO.server-5.6.3-687-b09aa0614c-ice36-b90.zip 23:56:19 + '[' '!' -z '' ']' 23:56:19 + DIST=OMERO.server-5.6.3-687-b09aa0614c-ice36-b90 23:56:19 + unzip OMERO.server-5.6.3-687-b09aa0614c-ice36-b90.zip 23:56:19 Archive: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90.zip 23:56:19 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/ 23:56:19 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/ 23:56:19 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/blitz/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/grid/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/profiles/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/error/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/grid/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/luts/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/luts/janelia/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/luts/matplotlib/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/luts/ncsa_paledit/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/luts/seaborn/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/luts/wcif/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/omero/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/omero/analysis_scripts/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/omero/annotation_scripts/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/omero/export_scripts/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/omero/figure_scripts/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/omero/import_scripts/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/scripts/omero/util_scripts/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/server/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/share/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/share/licenses/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/misc/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__1/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__10/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__11/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__2/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__3/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__4/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__5/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__6/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__7/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__8/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3A__9/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3__4/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3__5/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3__6/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO3__7/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO4.1__0/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO4.2__0/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO4.2__0/t/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO4.3__0/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO4.4__0/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO4__0/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.0__0/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.1__1/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.2__0/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.3__0/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.4DEV__1/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.4DEV__2/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.4DEV__3/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.4__0/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/var/ 23:56:20 creating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/var/tmp/ 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/LICENSE.txt 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/backup.cfg 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/blitz/mail-senders.example 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/blitz/mail-server.example 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/build.properties 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/env.bat 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/env.sh 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/hibernate.properties 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/ice.config 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/logback-cli.xml 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/logback-indexing-cli.xml 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/logback-indexing.xml 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/logback.xml 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/mime.types 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/node1.cfg 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/node2.cfg 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/omero.properties 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/profiles/psql 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/rollover.cfg 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/Windows.cfg 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/error/maintainance.html 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/grid/README 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/grid/default.xml 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/grid/templates.xml 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/grid/windefault.xml 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/ice.config 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/internal.cfg 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/master.cfg 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/templates/robot.template 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/etc/testdropbox.config 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/history.rst 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/accessors-smart.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/activation.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/aggdesigner-algorithm.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/aircompressor.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/annotations.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/antlr.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/aopalliance.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/apache-client.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/apiguardian-api.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/arns.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/asm.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/auth.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/avatica-core.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/avatica-metrics.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/aws-core.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/aws-query-protocol.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/aws-xml-protocol.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/base.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-anim.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-awt-util.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-bridge.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-codec.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-constants.jar 23:56:20 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-css.jar 23:56:21 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-dom.jar 23:56:21 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-ext.jar 23:56:21 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-gvt.jar 23:56:21 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/lib/client/batik-i18n.jar 23:56:21 inflating: 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OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.4__0/psql-footer.sql 23:56:39 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.4__0/psql-header.sql 23:56:39 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.4__0/schema.sql 23:56:39 inflating: OMERO.server-5.6.3-687-b09aa0614c-ice36-b90/sql/psql/OMERO5.4__0/views.sql 23:56:40 + rm -f OMERO.server-5.6.3-687-b09aa0614c-ice36-b90.zip 23:56:40 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-687-b09aa0614c-ice36-b90 /home/omero/workspace/OMERO-server/OMERO.server 23:56:40 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 23:56:40 ++ deactivate nondestructive 23:56:40 ++ '[' -n '' ']' 23:56:40 ++ '[' -n '' ']' 23:56:40 ++ hash -r 23:56:40 ++ '[' -n '' ']' 23:56:40 ++ unset VIRTUAL_ENV 23:56:40 ++ unset VIRTUAL_ENV_PROMPT 23:56:40 ++ '[' '!' nondestructive = nondestructive ']' 23:56:40 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 23:56:40 ++ export VIRTUAL_ENV 23:56:40 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:56:40 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:56:40 ++ export PATH 23:56:40 ++ '[' -n '' ']' 23:56:40 ++ '[' -z '' ']' 23:56:40 ++ _OLD_VIRTUAL_PS1= 23:56:40 ++ PS1='(.venv3) ' 23:56:40 ++ export PS1 23:56:40 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 23:56:40 ++ export VIRTUAL_ENV_PROMPT 23:56:40 ++ hash -r 23:56:40 + pip install -U pip 23:56:41 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 23:56:41 Collecting pip 23:56:41 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 23:56:41 Installing collected packages: pip 23:56:41 Attempting uninstall: pip 23:56:41 Found existing installation: pip 22.3.1 23:56:42 Uninstalling pip-22.3.1: 23:56:42 Successfully uninstalled pip-22.3.1 23:56:56 Successfully installed pip-26.2.1 23:56:56 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 23:56:57 Collecting zeroc-ice==3.6.5 23:56:57 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 23:57:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.6 MB/s 0:00:02 23:57:00 Installing collected packages: zeroc-ice 23:57:03 Successfully installed zeroc-ice-3.6.5 23:57:03 + pip install markdown 23:57:04 Collecting markdown 23:57:04 Using cached markdown-3.11-py3-none-any.whl.metadata (5.1 kB) 23:57:04 Using cached markdown-3.11-py3-none-any.whl (111 kB) 23:57:04 Installing collected packages: markdown 23:57:05 Successfully installed markdown-3.11 23:57:05 + pip install reportlab 23:57:06 Collecting reportlab 23:57:06 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB) 23:57:07 Collecting pillow>=9.0.0 (from reportlab) 23:57:07 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 23:57:07 Collecting charset-normalizer (from reportlab) 23:57:07 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB) 23:57:07 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB) 23:57:07 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 23:57:07 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB) 23:57:07 Installing collected packages: pillow, charset-normalizer, reportlab 23:57:16 23:57:16 Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.1 23:57:16 + pip install pyarrow 23:57:17 Collecting pyarrow 23:57:17 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB) 23:57:17 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (50.1 MB) 23:57:17 Installing collected packages: pyarrow 23:57:28 Successfully installed pyarrow-25.0.1 23:57:28 + pip install omego 23:57:29 Collecting omego 23:57:29 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 23:57:29 Collecting future (from omego) 23:57:29 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 23:57:29 Collecting yaclifw>=0.1.1 (from omego) 23:57:29 Using cached yaclifw-0.2.0-py3-none-any.whl 23:57:29 Collecting six (from yaclifw>=0.1.1->omego) 23:57:29 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 23:57:30 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 23:57:30 Using cached future-1.0.0-py3-none-any.whl (491 kB) 23:57:30 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 23:57:30 Installing collected packages: six, future, yaclifw, omego 23:57:35 23:57:35 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 23:57:35 + pip install tables 23:57:36 Collecting tables 23:57:36 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 23:57:37 Collecting numpy>=1.20.0 (from tables) 23:57:37 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 23:57:37 Collecting numexpr>=2.6.2 (from tables) 23:57:37 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 23:57:37 Collecting packaging (from tables) 23:57:37 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 23:57:37 Collecting py-cpuinfo (from tables) 23:57:37 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 23:57:37 Collecting blosc2>=2.3.0 (from tables) 23:57:37 Using cached blosc2-4.13.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.0 kB) 23:57:38 Collecting ndindex (from blosc2>=2.3.0->tables) 23:57:38 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 23:57:38 Collecting msgpack (from blosc2>=2.3.0->tables) 23:57:38 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 23:57:38 Collecting pydantic (from blosc2>=2.3.0->tables) 23:57:38 Using cached pydantic-2.13.5-py3-none-any.whl.metadata (110 kB) 23:57:38 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 23:57:38 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 23:57:38 Collecting rich (from blosc2>=2.3.0->tables) 23:57:38 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 23:57:39 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 23:57:39 Using cached threadpoolctl-3.7.0-py3-none-any.whl.metadata (24 kB) 23:57:39 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:39 Using cached anyio-4.15.1-py3-none-any.whl.metadata (4.7 kB) 23:57:39 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:39 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 23:57:39 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:39 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 23:57:39 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:39 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) 23:57:39 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:39 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 23:57:39 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 23:57:40 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 23:57:40 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 23:57:40 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 23:57:40 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 23:57:40 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 23:57:40 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 23:57:40 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 23:57:40 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 23:57:40 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 23:57:41 Collecting pydantic-core==2.46.5 (from pydantic->blosc2>=2.3.0->tables) 23:57:41 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 23:57:41 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 23:57:41 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 23:57:41 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 23:57:41 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 23:57:41 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 23:57:41 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) 23:57:41 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 23:57:41 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 23:57:41 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 23:57:41 Using cached blosc2-4.13.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) 23:57:41 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 23:57:42 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 23:57:42 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 23:57:42 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 23:57:42 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 23:57:42 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 23:57:42 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 23:57:42 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 23:57:42 Using cached anyio-4.15.1-py3-none-any.whl (132 kB) 23:57:42 Using cached idna-3.20-py3-none-any.whl (69 kB) 23:57:42 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 23:57:42 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 23:57:42 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (422 kB) 23:57:42 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 23:57:43 Using cached packaging-26.3-py3-none-any.whl (129 kB) 23:57:43 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 23:57:43 Using cached pydantic-2.13.5-py3-none-any.whl (472 kB) 23:57:43 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 23:57:43 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 23:57:43 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 23:57:43 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 23:57:43 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) 23:57:43 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 23:57:43 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 23:57:43 Using cached threadpoolctl-3.7.0-py3-none-any.whl (26 kB) 23:57:43 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 23:58:32 23:58:33 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.13.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.2 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.5 pydantic-core-2.46.5 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.7.0 typing-inspection-0.4.4 typing_extensions-4.16.0 23:58:33 + pip install jinja2 23:58:34 Collecting jinja2 23:58:34 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 23:58:34 Collecting MarkupSafe>=2.0 (from jinja2) 23:58:34 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 23:58:34 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 23:58:34 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 23:58:34 Installing collected packages: MarkupSafe, jinja2 23:58:35 23:58:35 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 23:58:35 + pip install omero-py 23:58:36 Collecting omero-py 23:58:36 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 23:58:36 Collecting appdirs (from omero-py) 23:58:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 23:58:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 23:58:36 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 23:58:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 23:58:36 Collecting PyYAML (from omero-py) 23:58:36 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 23:58:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 23:58:37 Collecting requests (from omero-py) 23:58:37 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 23:58:37 Collecting portalocker (from omero-py) 23:58:37 Using cached portalocker-4.4.0-py3-none-any.whl.metadata (10 kB) 23:58:37 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1) 23:58:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.20) 23:58:37 Collecting urllib3<3,>=1.26 (from requests->omero-py) 23:58:37 Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB) 23:58:37 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 23:58:37 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 23:58:37 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 23:58:37 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB) 23:58:37 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 23:58:37 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 23:58:37 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB) 23:58:37 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 23:58:55 23:58:55 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 urllib3-2.8.0 23:58:55 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 23:58:56 Collecting omero-metadata 23:58:56 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-0lh9vdnl/omero-metadata_dcaa73ea37a944358221d6491c892832 23:58:56 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-0lh9vdnl/omero-metadata_dcaa73ea37a944358221d6491c892832 23:58:58 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit e14b108f18a8e593c886beeb1b1ae4ee86e52632 23:58:58 Installing build dependencies: started 23:58:59 Installing build dependencies: finished with status 'done' 23:58:59 Getting requirements to build wheel: started 23:58:59 Getting requirements to build wheel: finished with status 'done' 23:58:59 Preparing metadata (pyproject.toml): started 23:58:59 Preparing metadata (pyproject.toml): finished with status 'done' 23:58:59 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 23:59:00 Collecting pandas<3,>=2 (from omero-metadata) 23:59:00 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 23:59:00 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 23:59:00 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 23:59:00 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 23:59:00 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 23:59:00 Using cached pytz-2026.4-py2.py3-none-any.whl.metadata (22 kB) 23:59:00 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 23:59:00 Using cached tzdata-2026.4-py2.py3-none-any.whl.metadata (1.4 kB) 23:59:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 23:59:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 23:59:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 23:59:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 23:59:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 23:59:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 23:59:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.4.0) 23:59:00 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 23:59:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1) 23:59:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20) 23:59:00 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0) 23:59:00 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 23:59:01 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 23:59:01 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 23:59:01 Using cached pytz-2026.4-py2.py3-none-any.whl (506 kB) 23:59:01 Using cached tzdata-2026.4-py2.py3-none-any.whl (347 kB) 23:59:01 Building wheels for collected packages: omero-metadata 23:59:01 Building wheel for omero-metadata (pyproject.toml): started 23:59:01 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 23:59:01 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=4ee19ea0709894fed032e367e2a9f7fd5c4c7877c919d02e20267b5662fc63bc 23:59:01 Stored in directory: /tmp/pip-ephem-wheel-cache-nzjp1hbw/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 23:59:01 Successfully built omero-metadata 23:59:01 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 23:59:50 23:59:50 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.4 tzdata-2026.4 23:59:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 23:59:51 Collecting omero-cli-render 23:59:51 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-pj4mrcrd/omero-cli-render_1e5ca583882e42a3b1076c7c0ff432b6 23:59:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-pj4mrcrd/omero-cli-render_1e5ca583882e42a3b1076c7c0ff432b6 23:59:52 Running command git checkout -b merge_ci --track origin/merge_ci 23:59:52 Switched to a new branch 'merge_ci' 23:59:52 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:59:52 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit f3854040321e0f1ce47cedc532cf749d848378e5 23:59:52 Installing build dependencies: started 23:59:54 Installing build dependencies: finished with status 'done' 23:59:54 Getting requirements to build wheel: started 23:59:54 Getting requirements to build wheel: finished with status 'done' 23:59:54 Preparing metadata (pyproject.toml): started 23:59:54 Preparing metadata (pyproject.toml): finished with status 'done' 23:59:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 23:59:54 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 23:59:54 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 23:59:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 23:59:54 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 23:59:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 23:59:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 23:59:54 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 23:59:54 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.4.0) 23:59:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1) 23:59:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20) 23:59:54 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0) 23:59:54 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 23:59:54 Building wheels for collected packages: omero-cli-render 23:59:54 Building wheel for omero-cli-render (pyproject.toml): started 23:59:54 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 23:59:54 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=f9b2ebdb61526bddaab5568b0830c9c0749eff167f295391b12f16f19d24dc08 23:59:54 Stored in directory: /tmp/pip-ephem-wheel-cache-aed07nhk/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 23:59:54 Successfully built omero-cli-render 23:59:55 Installing collected packages: omero-cli-render 23:59:55 Successfully installed omero-cli-render-0.8.2.dev0 23:59:55 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 23:59:56 Collecting omero-cli-duplicate 23:59:56 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-_i93joix/omero-cli-duplicate_b2bf2c6a3e1c4240a9e50a17c4208399 23:59:56 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-_i93joix/omero-cli-duplicate_b2bf2c6a3e1c4240a9e50a17c4208399 23:59:57 Running command git checkout -b merge_ci --track origin/merge_ci 23:59:57 Switched to a new branch 'merge_ci' 23:59:57 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:59:57 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit dd6619da0f820a190c574b468ab3e12d8da403f3 23:59:57 Installing build dependencies: started 23:59:58 Installing build dependencies: finished with status 'done' 23:59:58 Getting requirements to build wheel: started 23:59:59 Getting requirements to build wheel: finished with status 'done' 23:59:59 Preparing metadata (pyproject.toml): started 23:59:59 Preparing metadata (pyproject.toml): finished with status 'done' 23:59:59 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 23:59:59 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 23:59:59 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 23:59:59 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 23:59:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 23:59:59 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 23:59:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 23:59:59 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 23:59:59 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.4.0) 23:59:59 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1) 23:59:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20) 23:59:59 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0) 23:59:59 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 23:59:59 Building wheels for collected packages: omero-cli-duplicate 23:59:59 Building wheel for omero-cli-duplicate (pyproject.toml): started 23:59:59 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 23:59:59 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=545849a6b8a17c9c06c94ad5af3381baced68ef237ce49c4d028be4ca491eab8 23:59:59 Stored in directory: /tmp/pip-ephem-wheel-cache-62cr8b_1/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 23:59:59 Successfully built omero-cli-duplicate 23:59:59 Installing collected packages: omero-cli-duplicate 23:59:59 Successfully installed omero-cli-duplicate-0.4.1.dev0 23:59:59 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 00:00:00 Collecting omero-cli-zarr 00:00:00 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-is7o79ob/omero-cli-zarr_d3b93bb101bd423398791e3c776d6848 00:00:00 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-is7o79ob/omero-cli-zarr_d3b93bb101bd423398791e3c776d6848 00:00:01 Running command git checkout -b merge_ci --track origin/merge_ci 00:00:02 Switched to a new branch 'merge_ci' 00:00:02 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:00:02 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 4864a3a0d8bbc63bd669928ac63caf8eba2d8b76 00:00:02 Installing build dependencies: started 00:00:03 Installing build dependencies: finished with status 'done' 00:00:03 Getting requirements to build wheel: started 00:00:04 Getting requirements to build wheel: finished with status 'done' 00:00:04 Installing backend dependencies: started 00:00:05 Installing backend dependencies: finished with status 'done' 00:00:05 Preparing metadata (pyproject.toml): started 00:00:06 Preparing metadata (pyproject.toml): finished with status 'done' 00:00:06 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 00:00:06 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 00:00:06 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 00:00:06 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 00:00:06 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 00:00:06 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB) 00:00:06 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 00:00:06 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 00:00:06 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:06 Using cached fsspec-2026.9.0-py3-none-any.whl.metadata (10 kB) 00:00:07 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 00:00:07 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 00:00:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 00:00:07 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 00:00:07 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 00:00:07 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 00:00:07 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 00:00:08 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 00:00:08 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 00:00:08 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 00:00:08 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 00:00:08 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 00:00:08 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 00:00:08 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:08 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB) 00:00:08 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:08 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 00:00:08 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 00:00:08 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:08 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 00:00:08 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from 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00:00:09 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) 00:00:09 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0) 00:00:10 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:10 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) 00:00:10 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0) 00:00:10 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.4) 00:00:10 Requirement already satisfied: appdirs in 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aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:12 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 00:00:12 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:12 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB) 00:00:12 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:12 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 00:00:13 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:13 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (25 kB) 00:00:13 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:00:13 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (111 kB) 00:00:13 Requirement already satisfied: 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pydantic-2.12.5-py3-none-any.whl (463 kB) 00:00:15 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 00:00:15 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 00:00:15 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 00:00:15 Using cached s3fs-2026.9.0-py3-none-any.whl (33 kB) 00:00:15 Using cached aiobotocore-3.9.1-py3-none-any.whl (102 kB) 00:00:15 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 00:00:15 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 00:00:15 Using cached botocore-1.43.75-py3-none-any.whl (15.7 MB) 00:00:15 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 00:00:16 Using cached multidict-6.9.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (320 kB) 00:00:16 Using cached wrapt-2.4.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (226 kB) 00:00:16 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (117 kB) 00:00:16 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 00:00:16 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 00:00:16 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 00:00:16 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 00:00:16 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (235 kB) 00:00:16 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 00:00:16 Using cached imageio-2.37.4-py3-none-any.whl (318 kB) 00:00:16 Using cached lazy_loader-0.6-py3-none-any.whl (8.8 kB) 00:00:16 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 00:00:16 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 00:00:16 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 00:00:17 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 00:00:17 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 00:00:17 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 00:00:17 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (36 kB) 00:00:17 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 00:00:17 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 00:00:17 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 00:00:17 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 00:00:17 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 00:00:17 Building wheels for collected packages: omero-cli-zarr 00:00:17 Building wheel for omero-cli-zarr (pyproject.toml): started 00:00:18 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 00:00:18 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g4864a3a-py3-none-any.whl size=39539 sha256=77d7e18bfb191505e0e7694bbad52954656702790ab35ec90828f9d4261e8ca9 00:00:18 Stored in directory: /tmp/pip-ephem-wheel-cache-6py10_qt/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 00:00:18 Successfully built omero-cli-zarr 00:00:18 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 00:00:58 Attempting uninstall: pydantic-core 00:00:58 Found existing installation: pydantic_core 2.46.5 00:00:58 Uninstalling pydantic_core-2.46.5: 00:00:58 Successfully uninstalled pydantic_core-2.46.5 00:01:36 Attempting uninstall: pydantic 00:01:36 Found existing installation: pydantic 2.13.5 00:01:36 Uninstalling pydantic-2.13.5: 00:01:36 Successfully uninstalled pydantic-2.13.5 00:02:20 00:02:20 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.1 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.75 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.9.0 google-crc32c-1.9.0 imageio-2.37.4 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.6 locket-1.0.0 multidict-6.9.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g4864a3a partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.9.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.4.1 yarl-1.25.1 zarr-3.1.6 zipp-4.1.0 00:02:21 + pip install omero-certificates 00:02:22 Collecting omero-certificates 00:02:22 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 00:02:22 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 00:02:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:02:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:02:22 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 00:02:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 00:02:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 00:02:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:02:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 00:02:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.4.0) 00:02:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1) 00:02:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20) 00:02:22 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0) 00:02:22 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 00:02:22 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 00:02:23 Installing collected packages: omero-certificates 00:02:23 Successfully installed omero-certificates-0.4.0 00:02:23 + for x in *.tar.gz 00:02:23 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:02:24 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:02:24 Installing build dependencies: started 00:02:26 Installing build dependencies: finished with status 'done' 00:02:26 Getting requirements to build wheel: started 00:02:26 Getting requirements to build wheel: finished with status 'done' 00:02:26 Preparing metadata (pyproject.toml): started 00:02:27 Preparing metadata (pyproject.toml): finished with status 'done' 00:02:27 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 00:02:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:02:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:02:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 00:02:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 00:02:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 00:02:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:02:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 00:02:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.4.0) 00:02:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1) 00:02:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20) 00:02:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0) 00:02:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 00:02:27 Building wheels for collected packages: omero-dropbox 00:02:27 Building wheel for omero-dropbox (pyproject.toml): started 00:02:27 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:02:27 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=24a7cb1bf273a67ea84f759acbd28807edb6b21c2ab5e5b96ef6c3ec64f69a9b 00:02:27 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 00:02:27 Successfully built omero-dropbox 00:02:27 Installing collected packages: omero-dropbox 00:02:28 Successfully installed omero-dropbox-5.7.1.dev0 00:02:28 + for x in *.tar.gz 00:02:28 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 00:02:29 Processing ./omero_marshal-0.9.2.dev0.tar.gz 00:02:29 Installing build dependencies: started 00:02:31 Installing build dependencies: finished with status 'done' 00:02:31 Getting requirements to build wheel: started 00:02:31 Getting requirements to build wheel: finished with status 'done' 00:02:31 Preparing metadata (pyproject.toml): started 00:02:32 Preparing metadata (pyproject.toml): finished with status 'done' 00:02:32 Building wheels for collected packages: omero_marshal 00:02:32 Building wheel for omero_marshal (pyproject.toml): started 00:02:32 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:02:32 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=a66de4bbc407e6d543a57c90fb298390ef480b1d9af25a8a7f5a384632297142 00:02:32 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 00:02:32 Successfully built omero_marshal 00:02:32 Installing collected packages: omero_marshal 00:02:35 Successfully installed omero_marshal-0.9.2.dev0 00:02:35 + for x in *.tar.gz 00:02:35 + pip install -U omero_py-5.23.1.dev0.tar.gz 00:02:36 Processing ./omero_py-5.23.1.dev0.tar.gz 00:02:37 Installing build dependencies: started 00:02:38 Installing build dependencies: finished with status 'done' 00:02:38 Getting requirements to build wheel: started 00:02:39 Getting requirements to build wheel: finished with status 'done' 00:02:39 Preparing metadata (pyproject.toml): started 00:02:39 Preparing metadata (pyproject.toml): finished with status 'done' 00:02:39 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 00:02:39 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 00:02:39 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 00:02:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 00:02:39 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 00:02:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 00:02:39 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 00:02:39 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.4.0) 00:02:39 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1) 00:02:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20) 00:02:39 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0) 00:02:39 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 00:02:39 Building wheels for collected packages: omero-py 00:02:39 Building wheel for omero-py (pyproject.toml): started 00:02:40 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:02:40 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787194 sha256=a3bd24cfcbc84a6d3ecf61e96acbbf3609098de7432e84b795408df06902591a 00:02:40 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 00:02:40 Successfully built omero-py 00:02:41 Installing collected packages: omero-py 00:02:41 Attempting uninstall: omero-py 00:02:41 Found existing installation: omero-py 5.23.0 00:02:42 Uninstalling omero-py-5.23.0: 00:02:56 Successfully uninstalled omero-py-5.23.0 00:03:13 Successfully installed omero-py-5.23.1.dev0 00:03:13 + for x in *.tar.gz 00:03:13 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 00:03:14 Processing ./omero_scripts-5.10.1.dev0.tar.gz 00:03:14 Installing build dependencies: started 00:03:15 Installing build dependencies: finished with status 'done' 00:03:15 Getting requirements to build wheel: started 00:03:16 Getting requirements to build wheel: finished with status 'done' 00:03:16 Preparing metadata (pyproject.toml): started 00:03:16 Preparing metadata (pyproject.toml): finished with status 'done' 00:03:16 Building wheels for collected packages: omero-scripts 00:03:16 Building wheel for omero-scripts (pyproject.toml): started 00:03:16 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:03:16 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=35c2b71ca0e0b2273281a3dc38de560ac665cef722a92f2ae34926ccbcb94ba6 00:03:16 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 00:03:16 Successfully built omero-scripts 00:03:16 Installing collected packages: omero-scripts 00:03:17 Successfully installed omero-scripts-5.10.1.dev0 00:03:18 + for x in *.tar.gz 00:03:18 + pip install -U omero_web-5.33.3.dev0.tar.gz 00:03:18 Processing ./omero_web-5.33.3.dev0.tar.gz 00:03:18 Installing build dependencies: started 00:03:20 Installing build dependencies: finished with status 'done' 00:03:20 Getting requirements to build wheel: started 00:03:20 Getting requirements to build wheel: finished with status 'done' 00:03:20 Preparing metadata (pyproject.toml): started 00:03:20 Preparing metadata (pyproject.toml): finished with status 'done' 00:03:20 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (5.23.1.dev0) 00:03:21 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.3.dev0) 00:03:21 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 00:03:21 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.3.dev0) 00:03:21 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB) 00:03:21 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.3.dev0) 00:03:21 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 00:03:21 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.3.dev0) 00:03:21 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:03:21 Collecting whitenoise>=5.3.0 (from omero-web==5.33.3.dev0) 00:03:21 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 00:03:22 Collecting gunicorn>=19.3 (from omero-web==5.33.3.dev0) 00:03:22 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB) 00:03:22 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (0.9.2.dev0) 00:03:22 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (12.3.0) 00:03:22 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (2026.4) 00:03:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (4.4.0) 00:03:22 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (26.3) 00:03:22 Collecting importlib-resources (from omero-web==5.33.3.dev0) 00:03:22 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 00:03:22 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 00:03:22 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 00:03:22 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 00:03:22 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 00:03:22 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) (65.5.1) 00:03:22 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) 00:03:22 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 00:03:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.4.4) 00:03:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.0.0) 00:03:22 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.4.6) 00:03:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (6.0.3) 00:03:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.6.5) 00:03:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.34.2) 00:03:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.5.1) 00:03:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.20) 00:03:22 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.8.0) 00:03:22 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2026.7.22) 00:03:22 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:03:22 Using cached django-5.2.17-py3-none-any.whl (8.3 MB) 00:03:22 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 00:03:22 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 00:03:22 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 00:03:22 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB) 00:03:23 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 00:03:23 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 00:03:23 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 00:03:23 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 00:03:23 Building wheels for collected packages: omero-web 00:03:23 Building wheel for omero-web (pyproject.toml): started 00:03:24 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:03:24 Created wheel for omero-web: filename=omero_web-5.33.3.dev0-py3-none-any.whl size=2821707 sha256=977cb52c156ba1ca0035d22b58752c48b13917aeb39a7117b4d85793b2f65780 00:03:24 Stored in directory: /home/omero/.cache/pip/wheels/f9/cc/88/86aa2065a36d21a568dcadc16454372077670d9ca1a7b14a82 00:03:24 Successfully built omero-web 00:03:24 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 00:04:30 00:04:30 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.3.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 00:04:30 + omero config set omero.db.name OMERO-server 00:04:39 + omero config set omero.db.host pg 00:04:44 + omero config set omero.db.user postgres 00:04:49 + omero config set omero.data.dir /home/omero/omero-server-data 00:04:54 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:04:59 + omero config set omero.db.poolsize 25 00:05:05 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:05:10 + omero config set omero.security.trustStorePassword changeit 00:05:15 + omero config set omero.mail.config true 00:05:20 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:05:25 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' 00:05:30 + omero certificates 00:05:35 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 00:05:35 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:05:35 + '[' false = true ']' 00:05:35 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:05:35 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:05:35 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:05:36 2026-09-27 00:05:36,142 [ omego.db] DEBUG dbcommand => upgrade 00:05:36 2026-09-27 00:05:36,142 [ omego.db] DEBUG dbhost => localhost 00:05:36 2026-09-27 00:05:36,142 [ omego.db] DEBUG dbname => OMERO-server 00:05:36 2026-09-27 00:05:36,143 [ omego.db] DEBUG dbpass => omero 00:05:36 2026-09-27 00:05:36,143 [ omego.db] DEBUG dbuser => omero 00:05:36 2026-09-27 00:05:36,143 [ omego.db] DEBUG rootpass => omero 00:05:36 2026-09-27 00:05:36,143 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:05:36 2026-09-27 00:05:36,143 [omego.extern] INFO Executing : omero version 00:05:40 OMERO.py version: 00:05:40 OMERO.server version: 00:05:40 5.6.3-687-b09aa0614c-ice36-b90 00:05:40 5.23.1.dev0 00:05:41 2026-09-27 00:05:41,117 [omego.extern] INFO Completed [4.974 s] 00:05:41 2026-09-27 00:05:41,118 [omego.extern] DEBUG Using omero CLI from omero 00:05:41 2026-09-27 00:05:41,118 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:05:41 2026-09-27 00:05:41,118 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:05:41 2026-09-27 00:05:41,118 [omego.extern] INFO Executing : omero config get --show-password 00:05:46 2026-09-27 00:05:46,099 [omego.extern] INFO Completed [4.981 s] 00:05:46 2026-09-27 00:05:46,099 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:05:46 2026-09-27 00:05:46,099 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:05:46 2026-09-27 00:05:46,304 [omego.extern] INFO Completed [0.204 s] 00:05:46 2026-09-27 00:05:46,304 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 00:05:46 2026-09-27 00:05:46,304 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 00:05:46 00:05:46 2026-09-27 00:05:46,304 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:05:46 2026-09-27 00:05:46,304 [omego.extern] INFO Executing : omero config get --show-password 00:05:51 2026-09-27 00:05:51,300 [omego.extern] INFO Completed [4.997 s] 00:05:51 2026-09-27 00:05:51,301 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:05:51 2026-09-27 00:05:51,301 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:05:51 2026-09-27 00:05:51,335 [omego.extern] INFO Completed [0.035 s] 00:05:51 2026-09-27 00:05:51,335 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.12") at port "5432".\n' 00:05:51 2026-09-27 00:05:51,336 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:05:51 2026-09-27 00:05:51,336 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:05:51 2026-09-27 00:05:51,336 [omego.extern] INFO Executing : omero config get --show-password 00:05:56 2026-09-27 00:05:56,587 [omego.extern] INFO Completed [5.251 s] 00:05:56 2026-09-27 00:05:56,587 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:05:56 2026-09-27 00:05:56,587 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:05:56 2026-09-27 00:05:56,963 [omego.extern] INFO Completed [0.376 s] 00:05:56 2026-09-27 00:05:56,963 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:05:56 2026-09-27 00:05:56,963 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:05:57 2026-09-27 00:05:57,006 [ omego.db] INFO Database is already at OMERO5.4__0 00:05:57 + export LANG=en_US.UTF-8 00:05:57 + LANG=en_US.UTF-8 00:05:57 + export LANGUAGE=en_US:en 00:05:57 + LANGUAGE=en_US:en 00:05:57 + export LC_ALL=en_US.UTF-8 00:05:57 + LC_ALL=en_US.UTF-8 00:05:57 + BUILD_ID=DONT_KILL_ME 00:05:57 + omero admin start 00:06:08 No descriptor given. Using etc/grid/default.xml 00:06:20 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:06:20 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:06:20 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:06:20 Waiting on startup. Use CTRL-C to exit 00:06:21 + omero admin waitup 00:06:27 Waiting on startup. Use CTRL-C to exit 00:06:28 + omero admin diagnostics 00:06:32 00:06:32 ================================================================================ 00:06:32 OMERO Diagnostics (admin) 00:06:32 ================================================================================ 00:06:32 00:06:32 Commands: java -version 21.0.12 (/usr/bin/java) 00:06:32 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:06:32 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:06:32 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:06:32 Commands: psql --version 16.14 (/usr/bin/psql) 00:06:32 Commands: openssl version 3.5.527 (/usr/bin/openssl) 00:06:32 00:06:32 Component: OMERO.py 5.23.1.dev0 00:06:32 Component: OMERO.server 5.6.3-687-b09aa0614c-ice36-b90 00:06:32 00:06:32 Server: icegridnode running 00:06:32 Server: Blitz-0 active (pid = 23095, enabled) 00:06:32 Server: Indexer-0 active (pid = 23121, enabled) 00:06:32 Server: OMERO.Glacier2 active (pid = 23117, enabled) 00:06:32 Server: OMERO.IceStorm active (pid = 23147, enabled) 00:06:32 Server: Processor-0 active (pid = 23128, enabled) 00:06:32 Server: Tables-0 activating (enabled) 00:06:32 00:06:32 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:06:32 Log files: Blitz-0.log 31.5 KB errors=0 warnings=1 00:06:32 Log files: DropBox.log n/a 00:06:32 Log files: FileServer.log n/a 00:06:32 Log files: Indexer-0.log 2.6 KB 00:06:32 Log files: MonitorServer.log n/a 00:06:32 Log files: Processor-0.log 856 B 00:06:32 Log files: Tables-0.log 977 B 00:06:32 Log files: TestDropBox.log n/a 00:06:32 Log files: master.err empty 00:06:32 Log files: master.out 30.7 KB 00:06:32 Log files: Total size 0.07 MB 00:06:32 00:06:32 00:06:32 Environment:OMERO_HOME=(unset) 00:06:32 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:06:32 Environment:OMERO_NODE=(unset) 00:06:32 Environment:OMERO_MASTER=(unset) 00:06:32 Environment:OMERO_USERDIR=(unset) 00:06:32 Environment:OMERO_TMPDIR=(unset) 00:06:32 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:06:32 Environment:PYTHONPATH=(unset) 00:06:32 Environment:ICE_HOME=/opt/ice-3.6.5 00:06:32 Environment:LD_LIBRARY_PATH=(unset) 00:06:32 Environment:DYLD_LIBRARY_PATH=(unset) 00:06:33 00:06:33 OMERO SSL port:4064 00:06:33 OMERO TCP port:4063 00:06:33 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:06:33 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:06:33 00:06:33 JVM settings: Blitz-${index} -Xmx5007m 00:06:33 JVM settings: Indexer-${index} -Xmx3338m 00:06:33 JVM settings: PixelData-${index} -Xmx5007m 00:06:33 JVM settings: Repository-${index} -Xmx3338m 00:06:33 00:06:33 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:06:33 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:06:33 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:06:33 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 00:06:33 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 00:06:33 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 00:06:33 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 00:06:33 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 00:06:33 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 00:06:33 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 00:06:33 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 00:06:33 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 00:06:33 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 00:06:33 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 00:06:33 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 00:06:33 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 00:06:33 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.1 4b6dbee3741150881c01c9929abd8d1961bd9dc8 00:06:33 + deactivate 00:06:33 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:06:33 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:06:33 + export PATH 00:06:33 + unset _OLD_VIRTUAL_PATH 00:06:33 + '[' -n '' ']' 00:06:33 + hash -r 00:06:33 + '[' -n '' ']' 00:06:33 + unset VIRTUAL_ENV 00:06:33 + unset VIRTUAL_ENV_PROMPT 00:06:33 + '[' '!' '' = nondestructive ']' 00:06:33 + unset -f deactivate 00:06:34 Finished: SUCCESS