00:45:28 Started by upstream project "Trigger" build number 57 00:45:28 originally caused by: 00:45:28 Started by timer 00:45:28 Running as SYSTEM 00:45:28 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:45:28 [OMERO-server] $ /bin/bash -xe /tmp/jenkins18629648613825948.sh 00:45:28 + source /home/settings.env 00:45:28 ++ OMERO_DB_HOST=pg 00:45:28 ++ OMERO_DB_USER=postgres 00:45:28 ++ OMERO_DB_PASS= 00:45:28 ++ OMERO_ROOT_PASS=omero 00:45:28 ++ OMERO_DATA_DIR=/OMERO 00:45:28 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:45:28 + OMERO_DB_NAME=OMERO-server 00:45:28 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:45:28 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:45:28 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:45:28 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:45:28 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:45:28 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:45:28 ++ deactivate nondestructive 00:45:28 ++ '[' -n '' ']' 00:45:28 ++ '[' -n '' ']' 00:45:28 ++ hash -r 00:45:28 ++ '[' -n '' ']' 00:45:28 ++ unset VIRTUAL_ENV 00:45:28 ++ unset VIRTUAL_ENV_PROMPT 00:45:28 ++ '[' '!' nondestructive = nondestructive ']' 00:45:28 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:45:28 ++ export VIRTUAL_ENV 00:45:28 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:28 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:28 ++ export PATH 00:45:28 ++ '[' -n '' ']' 00:45:28 ++ '[' -z '' ']' 00:45:28 ++ _OLD_VIRTUAL_PS1= 00:45:28 ++ PS1='(.venv3) ' 00:45:28 ++ export PS1 00:45:28 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 00:45:28 ++ export VIRTUAL_ENV_PROMPT 00:45:28 ++ hash -r 00:45:28 + omero admin stop 00:45:30 Waiting on shutdown. Use CTRL-C to exit 00:45:30 .+ sleep 5 00:45:45 + deactivate 00:45:45 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:45:45 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:45 + export PATH 00:45:45 + unset _OLD_VIRTUAL_PATH 00:45:45 + '[' -n '' ']' 00:45:45 + hash -r 00:45:45 + '[' -n '' ']' 00:45:45 + unset VIRTUAL_ENV 00:45:45 + unset VIRTUAL_ENV_PROMPT 00:45:45 + '[' '!' '' = nondestructive ']' 00:45:45 + unset -f deactivate 00:45:45 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:45:46 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 00:45:49 + '[' false = true ']' 00:45:49 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:45:49 Skipping PURGE_DATA:CleanDbAndRepo 00:45:49 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:45:51 Copied 1 artifact from "OMERO-build" build number 34 00:45:51 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 30 00:45:51 Copied 2 artifacts from "OMERO-build-build" build number 34 00:45:51 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 27 00:45:51 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1028939278494286444.sh 00:45:51 + source /home/settings.env 00:45:51 ++ OMERO_DB_HOST=pg 00:45:51 ++ OMERO_DB_USER=postgres 00:45:51 ++ OMERO_DB_PASS= 00:45:51 ++ OMERO_ROOT_PASS=omero 00:45:51 ++ OMERO_DATA_DIR=/OMERO 00:45:51 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:45:51 + OMERO_DB_NAME=OMERO-server 00:45:51 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:45:51 + mkdir -p /home/omero/omero-server-data 00:45:51 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:45:51 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:45:51 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:45:51 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:45:51 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:45:51 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:45:51 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:45:51 ++ ls OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34.zip 00:45:51 + ZIP=OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34.zip 00:45:51 + '[' '!' -z '' ']' 00:45:51 + DIST=OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34 00:45:51 + unzip OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34.zip 00:45:51 Archive: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34.zip 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/blitz/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/grid/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/profiles/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/error/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/grid/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/luts/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/luts/janelia/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/luts/matplotlib/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/luts/ncsa_paledit/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/luts/seaborn/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/luts/wcif/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/omero/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/omero/analysis_scripts/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/omero/annotation_scripts/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/omero/export_scripts/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/omero/figure_scripts/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/omero/import_scripts/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/scripts/omero/util_scripts/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/server/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/misc/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__1/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__10/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__11/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__2/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__3/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__4/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__5/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__6/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__7/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__8/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__9/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3__4/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3__5/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3__6/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3__7/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.1__0/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.2__0/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.2__0/t/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.3__0/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.4__0/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4__0/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.0__0/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.1__1/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.2__0/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.3__0/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4DEV__1/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4DEV__2/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4DEV__3/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/var/ 00:45:51 creating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/var/tmp/ 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/LICENSE.txt 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/backup.cfg 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/blitz/mail-senders.example 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/blitz/mail-server.example 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/build.properties 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/env.bat 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/env.sh 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/hibernate.properties 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/ice.config 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/logback-cli.xml 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/logback-indexing-cli.xml 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/logback-indexing.xml 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/logback.xml 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/mime.types 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/node1.cfg 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/node2.cfg 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/omero.properties 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/profiles/psql 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/rollover.cfg 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/Windows.cfg 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/error/maintainance.html 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/grid/README 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/grid/default.xml 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/grid/templates.xml 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/grid/windefault.xml 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/ice.config 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/internal.cfg 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/master.cfg 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/templates/robot.template 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/etc/testdropbox.config 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/history.rst 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/OMEZarrReader.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/accessors-smart.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/activation.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/aggdesigner-algorithm.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/aircompressor.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/annotations.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/antlr.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/aopalliance.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/apiguardian-api.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/asm.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/avatica-core.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/avatica-metrics.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/aws-java-sdk-core.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/aws-java-sdk-kms.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/aws-java-sdk-s3.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/base.jar 00:45:51 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/lib/client/batik-anim.jar 00:45:51 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inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/npl-1_1.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/path.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/pil.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/postgresql.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/psf-v2.0.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/psf-v2.5.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/scons.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/slf4j.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/tablelayout.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/which.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/zlib-libpng.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/share/licenses/zpl-v2.1.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/README.txt 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/misc/Makefile 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/misc/current.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/misc/enums.py 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__1/OMERO3__7.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__10/OMERO3A__9.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__11/OMERO3A__10.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__11/OMERO3A__5.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3A__2/OMERO3A__1.sql 00:45:54 inflating: 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OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3__5/OMERO3__4.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3__6/OMERO3__5.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO3__7/OMERO3__6.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.1__0/OMERO4__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO4__0/OMERO3A__11.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/psql-footer.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/psql-header.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/schema.sql 00:45:54 inflating: OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34/sql/psql/OMERO5.4__0/views.sql 00:45:54 + rm -f OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34.zip 00:45:54 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-586-0f65a7e02f-ice36-b34 /home/omero/workspace/OMERO-server/OMERO.server 00:45:54 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar 00:45:54 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:45:54 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:45:54 --2026-01-26 00:45:54-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar 00:45:54 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ... 00:45:54 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected. 00:45:54 HTTP request sent, awaiting response... 200 OK 00:45:54 Length: 889211 (868K) [application/java-archive] 00:45:54 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ 00:45:54 00:45:54 0K .......... .......... .......... .......... .......... 5% 34.2M 0s 00:45:54 50K .......... .......... .......... .......... .......... 11% 3.58M 0s 00:45:54 100K .......... .......... .......... .......... .......... 17% 3.95M 0s 00:45:54 150K .......... .......... .......... .......... .......... 23% 40.0M 0s 00:45:54 200K .......... .......... .......... .......... .......... 28% 142M 0s 00:45:54 250K .......... .......... .......... .......... .......... 34% 59.2M 0s 00:45:54 300K .......... .......... .......... .......... .......... 40% 90.6M 0s 00:45:54 350K .......... .......... .......... .......... .......... 46% 4.55M 0s 00:45:54 400K .......... .......... .......... .......... .......... 51% 27.5M 0s 00:45:54 450K .......... .......... .......... .......... .......... 57% 169M 0s 00:45:54 500K .......... .......... .......... .......... .......... 63% 62.1M 0s 00:45:54 550K .......... .......... .......... .......... .......... 69% 286M 0s 00:45:54 600K .......... .......... .......... .......... .......... 74% 66.0M 0s 00:45:54 650K .......... .......... .......... .......... .......... 80% 4.14M 0s 00:45:54 700K .......... .......... .......... .......... .......... 86% 54.0M 0s 00:45:54 750K .......... .......... .......... .......... .......... 92% 63.6M 0s 00:45:54 800K .......... .......... .......... .......... .......... 97% 223M 0s 00:45:54 850K .......... ........ 100% 258M=0.06s 00:45:54 00:45:54 2026-01-26 00:45:54 (14.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211] 00:45:54 00:45:54 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar 00:45:54 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:45:54 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:45:54 --2026-01-26 00:45:54-- https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar 00:45:54 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ... 00:45:54 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected. 00:45:54 HTTP request sent, awaiting response... 200 OK 00:45:54 Length: 73309 (72K) [application/java-archive] 00:45:54 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ 00:45:54 00:45:54 0K .......... .......... .......... .......... .......... 69% 33.8M 0s 00:45:54 50K .......... .......... . 100% 1.71M=0.01s 00:45:54 00:45:54 2026-01-26 00:45:54 (5.09 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309] 00:45:54 00:45:54 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar 00:45:54 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:45:54 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:45:54 --2026-01-26 00:45:54-- https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar 00:45:54 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ... 00:45:54 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected. 00:45:54 HTTP request sent, awaiting response... 200 OK 00:45:55 Length: 63303 (62K) [application/java-archive] 00:45:55 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ 00:45:55 00:45:55 0K .......... .......... .......... .......... .......... 80% 32.1M 0s 00:45:55 50K .......... . 100% 86.2M=0.002s 00:45:55 00:45:55 2026-01-26 00:45:55 (36.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303] 00:45:55 00:45:55 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar 00:45:55 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:45:55 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:45:55 --2026-01-26 00:45:55-- https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar 00:45:55 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ... 00:45:55 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected. 00:45:55 HTTP request sent, awaiting response... 200 OK 00:45:55 Length: 1271272 (1.2M) [application/java-archive] 00:45:55 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ 00:45:55 00:45:55 0K .......... .......... .......... .......... .......... 4% 3.50M 0s 00:45:55 50K .......... .......... .......... .......... .......... 8% 7.65M 0s 00:45:55 100K .......... .......... .......... .......... .......... 12% 4.95M 0s 00:45:55 150K .......... .......... .......... .......... .......... 16% 10.7M 0s 00:45:55 200K .......... .......... .......... .......... .......... 20% 12.8M 0s 00:45:55 250K .......... .......... .......... .......... .......... 24% 10.8M 0s 00:45:55 300K .......... .......... .......... .......... .......... 28% 14.8M 0s 00:45:55 350K .......... .......... .......... .......... .......... 32% 25.2M 0s 00:45:55 400K .......... .......... .......... .......... .......... 36% 16.2M 0s 00:45:55 450K .......... .......... .......... .......... .......... 40% 19.2M 0s 00:45:55 500K .......... .......... .......... .......... .......... 44% 17.6M 0s 00:45:55 550K .......... .......... .......... .......... .......... 48% 19.3M 0s 00:45:55 600K .......... .......... .......... .......... .......... 52% 17.9M 0s 00:45:55 650K .......... .......... .......... .......... .......... 56% 11.8M 0s 00:45:55 700K .......... .......... .......... .......... .......... 60% 31.5M 0s 00:45:55 750K .......... .......... .......... .......... .......... 64% 16.9M 0s 00:45:55 800K .......... .......... .......... .......... .......... 68% 14.6M 0s 00:45:55 850K .......... .......... .......... .......... .......... 72% 12.7M 0s 00:45:55 900K .......... .......... .......... .......... .......... 76% 25.1M 0s 00:45:55 950K .......... .......... .......... .......... .......... 80% 25.4M 0s 00:45:55 1000K .......... .......... .......... .......... .......... 84% 18.1M 0s 00:45:55 1050K .......... .......... .......... .......... .......... 88% 13.6M 0s 00:45:55 1100K .......... .......... .......... .......... .......... 92% 13.3M 0s 00:45:55 1150K .......... .......... .......... .......... .......... 96% 28.9M 0s 00:45:55 1200K .......... .......... .......... .......... . 100% 18.0M=0.1s 00:45:55 00:45:55 2026-01-26 00:45:55 (12.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272] 00:45:55 00:45:55 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar 00:45:55 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:45:55 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:45:55 --2026-01-26 00:45:55-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar 00:45:55 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ... 00:45:55 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected. 00:45:55 HTTP request sent, awaiting response... 200 OK 00:45:55 Length: 1036468 (1012K) [application/java-archive] 00:45:55 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’ 00:45:55 00:45:55 0K .......... .......... .......... .......... .......... 4% 31.2M 0s 00:45:55 50K .......... .......... .......... .......... .......... 9% 3.59M 0s 00:45:55 100K .......... .......... .......... .......... .......... 14% 66.8M 0s 00:45:55 150K .......... .......... .......... .......... .......... 19% 3.79M 0s 00:45:55 200K .......... .......... .......... .......... .......... 24% 97.3M 0s 00:45:55 250K .......... .......... .......... .......... .......... 29% 63.4M 0s 00:45:55 300K .......... .......... .......... .......... .......... 34% 61.1M 0s 00:45:55 350K .......... .......... .......... .......... .......... 39% 324M 0s 00:45:55 400K .......... .......... .......... .......... .......... 44% 4.15M 0s 00:45:55 450K .......... .......... .......... .......... .......... 49% 214M 0s 00:45:55 500K .......... .......... .......... .......... .......... 54% 58.3M 0s 00:45:55 550K .......... .......... .......... .......... .......... 59% 316M 0s 00:45:55 600K .......... .......... .......... .......... .......... 64% 56.6M 0s 00:45:55 650K .......... .......... .......... .......... .......... 69% 4.09M 0s 00:45:55 700K .......... .......... .......... .......... .......... 74% 157M 0s 00:45:55 750K .......... .......... .......... .......... .......... 79% 71.2M 0s 00:45:55 800K .......... .......... .......... .......... .......... 83% 254M 0s 00:45:55 850K .......... .......... .......... .......... .......... 88% 56.0M 0s 00:45:55 900K .......... .......... .......... .......... .......... 93% 4.18M 0s 00:45:55 950K .......... .......... .......... .......... .......... 98% 257M 0s 00:45:55 1000K .......... .. 100% 71.6M=0.07s 00:45:55 00:45:55 2026-01-26 00:45:55 (13.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’ saved [1036468/1036468] 00:45:55 00:45:55 + for x in *.jar 00:45:55 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server 00:45:55 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:45:55 ++ deactivate nondestructive 00:45:55 ++ '[' -n '' ']' 00:45:55 ++ '[' -n '' ']' 00:45:55 ++ hash -r 00:45:55 ++ '[' -n '' ']' 00:45:55 ++ unset VIRTUAL_ENV 00:45:55 ++ unset VIRTUAL_ENV_PROMPT 00:45:55 ++ '[' '!' nondestructive = nondestructive ']' 00:45:55 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:45:55 ++ export VIRTUAL_ENV 00:45:55 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:55 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:55 ++ export PATH 00:45:55 ++ '[' -n '' ']' 00:45:55 ++ '[' -z '' ']' 00:45:55 ++ _OLD_VIRTUAL_PS1= 00:45:55 ++ PS1='(.venv3) ' 00:45:55 ++ export PS1 00:45:55 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 00:45:55 ++ export VIRTUAL_ENV_PROMPT 00:45:55 ++ hash -r 00:45:55 + pip install -U pip 00:45:56 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 00:45:56 Collecting pip 00:45:56 Using cached pip-25.3-py3-none-any.whl (1.8 MB) 00:45:56 Installing collected packages: pip 00:45:56 Attempting uninstall: pip 00:45:56 Found existing installation: pip 22.3.1 00:45:56 Uninstalling pip-22.3.1: 00:45:56 Successfully uninstalled pip-22.3.1 00:45:57 Successfully installed pip-25.3 00:45:57 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:45:57 Collecting zeroc-ice==3.6.5 00:45:57 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:45:59 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.0 MB/s 0:00:01 00:45:59 Installing collected packages: zeroc-ice 00:46:00 Successfully installed zeroc-ice-3.6.5 00:46:00 + pip install markdown 00:46:01 Collecting markdown 00:46:01 Using cached markdown-3.10.1-py3-none-any.whl.metadata (5.1 kB) 00:46:01 Using cached markdown-3.10.1-py3-none-any.whl (107 kB) 00:46:01 Installing collected packages: markdown 00:46:01 Successfully installed markdown-3.10.1 00:46:01 + pip install reportlab 00:46:01 Collecting reportlab 00:46:01 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB) 00:46:02 Collecting pillow>=9.0.0 (from reportlab) 00:46:02 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB) 00:46:02 Collecting charset-normalizer (from reportlab) 00:46:02 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) 00:46:02 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB) 00:46:02 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 00:46:02 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 00:46:02 Installing collected packages: pillow, charset-normalizer, reportlab 00:46:03 00:46:03 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9 00:46:03 + pip install omego 00:46:03 Collecting omego 00:46:03 Using cached omego-0.7.0-py3-none-any.whl 00:46:03 Collecting future (from omego) 00:46:03 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 00:46:03 Collecting yaclifw>=0.1.1 (from omego) 00:46:03 Using cached yaclifw-0.2.0-py3-none-any.whl 00:46:03 Collecting six (from yaclifw>=0.1.1->omego) 00:46:03 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 00:46:03 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:46:03 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 00:46:03 Installing collected packages: six, future, yaclifw, omego 00:46:04 00:46:04 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 00:46:04 + pip install tables 00:46:04 Collecting tables 00:46:04 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) 00:46:04 Collecting numpy>=1.20.0 (from tables) 00:46:04 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 00:46:05 Collecting numexpr>=2.6.2 (from tables) 00:46:05 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 00:46:05 Collecting packaging (from tables) 00:46:05 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB) 00:46:05 Collecting py-cpuinfo (from tables) 00:46:05 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:46:05 Collecting blosc2>=2.3.0 (from tables) 00:46:05 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB) 00:46:05 Collecting typing-extensions>=4.4.0 (from tables) 00:46:05 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) 00:46:05 Collecting ndindex (from blosc2>=2.3.0->tables) 00:46:05 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 00:46:05 Collecting msgpack (from blosc2>=2.3.0->tables) 00:46:05 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:46:05 Collecting platformdirs (from blosc2>=2.3.0->tables) 00:46:05 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB) 00:46:05 Collecting requests (from blosc2>=2.3.0->tables) 00:46:05 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) 00:46:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4) 00:46:05 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 00:46:05 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) 00:46:05 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) 00:46:05 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB) 00:46:05 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) 00:46:05 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB) 00:46:05 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:46:05 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB) 00:46:05 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB) 00:46:05 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB) 00:46:05 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) 00:46:05 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB) 00:46:05 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 00:46:05 Using cached packaging-26.0-py3-none-any.whl (74 kB) 00:46:05 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB) 00:46:05 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:46:05 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 00:46:05 Using cached idna-3.11-py3-none-any.whl (71 kB) 00:46:05 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB) 00:46:05 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) 00:46:05 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables 00:46:11 00:46:11 Successfully installed blosc2-3.12.2 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.1 packaging-26.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3 00:46:11 + pip install jinja2 00:46:11 Collecting jinja2 00:46:11 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 00:46:11 Collecting MarkupSafe>=2.0 (from jinja2) 00:46:11 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 00:46:11 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 00:46:11 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 00:46:11 Installing collected packages: MarkupSafe, jinja2 00:46:11 00:46:11 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 00:46:11 + pip install omero-py 00:46:12 Collecting omero-py 00:46:12 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB) 00:46:12 Collecting appdirs (from omero-py) 00:46:12 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:46:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 00:46:12 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.1) 00:46:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0) 00:46:12 Collecting PyYAML (from omero-py) 00:46:12 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 00:46:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:46:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5) 00:46:12 Collecting portalocker (from omero-py) 00:46:12 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 00:46:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4) 00:46:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11) 00:46:12 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3) 00:46:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4) 00:46:12 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) 00:46:12 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:46:12 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:46:12 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 00:46:12 Installing collected packages: appdirs, PyYAML, portalocker, omero-py 00:46:14 00:46:14 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0 00:46:14 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:46:14 Collecting omero-metadata 00:46:14 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-un1s0zt8/omero-metadata_4ac8571bf56445f68c3320cb42519205 00:46:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-un1s0zt8/omero-metadata_4ac8571bf56445f68c3320cb42519205 00:46:15 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 28963b45e9d52498ebfe2d816b4f7fa6ef72b298 00:46:15 Installing build dependencies: started 00:46:16 Installing build dependencies: finished with status 'done' 00:46:16 Getting requirements to build wheel: started 00:46:16 Getting requirements to build wheel: finished with status 'done' 00:46:16 Preparing metadata (pyproject.toml): started 00:46:16 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:16 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3) 00:46:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 00:46:16 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 00:46:17 Collecting pandas (from omero-metadata) 00:46:17 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB) 00:46:17 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:46:17 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:46:17 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.1) 00:46:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0) 00:46:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:46:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5) 00:46:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) 00:46:17 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 00:46:17 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:46:17 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:46:17 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 00:46:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4) 00:46:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11) 00:46:17 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3) 00:46:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4) 00:46:17 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB) 00:46:17 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:46:17 Building wheels for collected packages: omero-metadata 00:46:17 Building wheel for omero-metadata (pyproject.toml): started 00:46:17 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:46:17 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39374 sha256=8f26d92371dc713c2d2b1b076cf9489d7217345e6f684a8d612e807fa859cb7b 00:46:17 Stored in directory: /tmp/pip-ephem-wheel-cache-uhyeyvi8/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 00:46:17 Successfully built omero-metadata 00:46:17 Installing collected packages: python-dateutil, pandas, omero-metadata 00:46:22 00:46:22 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0 00:46:22 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:46:22 Collecting omero-cli-render 00:46:22 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-4hqbruc8/omero-cli-render_badd7b1ce5234f479137fae4561bf6fe 00:46:22 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-4hqbruc8/omero-cli-render_badd7b1ce5234f479137fae4561bf6fe 00:46:23 Running command git checkout -b merge_ci --track origin/merge_ci 00:46:23 Switched to a new branch 'merge_ci' 00:46:23 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:46:23 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 00e09a93e03344d712aeedb88a0f19b97c03b81d 00:46:23 Installing build dependencies: started 00:46:24 Installing build dependencies: finished with status 'done' 00:46:24 Getting requirements to build wheel: started 00:46:24 Getting requirements to build wheel: finished with status 'done' 00:46:24 Preparing metadata (pyproject.toml): started 00:46:24 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:24 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 00:46:24 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3) 00:46:24 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:46:24 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:46:24 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.1) 00:46:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0) 00:46:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:46:24 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5) 00:46:24 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) 00:46:24 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4) 00:46:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11) 00:46:24 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3) 00:46:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4) 00:46:24 Building wheels for collected packages: omero-cli-render 00:46:24 Building wheel for omero-cli-render (pyproject.toml): started 00:46:25 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:46:25 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=12d0e348607a24be78fbfdbff256ca757ddb24264caad96ebd935acee8e3636b 00:46:25 Stored in directory: /tmp/pip-ephem-wheel-cache-t3p7qd8f/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 00:46:25 Successfully built omero-cli-render 00:46:25 Installing collected packages: omero-cli-render 00:46:25 Successfully installed omero-cli-render-0.8.2.dev0 00:46:25 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:46:25 Collecting omero-cli-duplicate 00:46:25 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-hx4zeeam/omero-cli-duplicate_f11ab335f3b144ce9da973cc52b803e2 00:46:25 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-hx4zeeam/omero-cli-duplicate_f11ab335f3b144ce9da973cc52b803e2 00:46:26 Running command git checkout -b merge_ci --track origin/merge_ci 00:46:26 Switched to a new branch 'merge_ci' 00:46:26 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:46:26 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 64dee32cb5984b948a162a2d021f27532b42d952 00:46:26 Installing build dependencies: started 00:46:27 Installing build dependencies: finished with status 'done' 00:46:27 Getting requirements to build wheel: started 00:46:27 Getting requirements to build wheel: finished with status 'done' 00:46:27 Preparing metadata (pyproject.toml): started 00:46:27 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:27 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3) 00:46:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:46:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:46:27 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.1) 00:46:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0) 00:46:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 00:46:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:46:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5) 00:46:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 00:46:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4) 00:46:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11) 00:46:27 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3) 00:46:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4) 00:46:27 Building wheels for collected packages: omero-cli-duplicate 00:46:27 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:46:27 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:46:27 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11537 sha256=4819bd4928c8a99f13c792de440a2958ad0cc0ffa65c7fef0f25cb694395da08 00:46:27 Stored in directory: /tmp/pip-ephem-wheel-cache-7f3cv8yp/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 00:46:27 Successfully built omero-cli-duplicate 00:46:28 Installing collected packages: omero-cli-duplicate 00:46:28 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:46:28 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 00:46:28 Collecting omero-cli-zarr 00:46:28 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-zz474d1i/omero-cli-zarr_a7d20f1c451b4f4e986eb7951b9d2592 00:46:28 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-zz474d1i/omero-cli-zarr_a7d20f1c451b4f4e986eb7951b9d2592 00:46:29 Running command git checkout -b merge_ci --track origin/merge_ci 00:46:29 Switched to a new branch 'merge_ci' 00:46:29 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:46:29 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 671cae3bd0890c9025c665c1664af1318741e151 00:46:29 Installing build dependencies: started 00:46:30 Installing build dependencies: finished with status 'done' 00:46:30 Getting requirements to build wheel: started 00:46:30 Getting requirements to build wheel: finished with status 'done' 00:46:30 Installing backend dependencies: started 00:46:31 Installing backend dependencies: finished with status 'done' 00:46:31 Preparing metadata (pyproject.toml): started 00:46:31 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.3) 00:46:31 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr) 00:46:31 Using cached ome_zarr-0.12.2-py3-none-any.whl.metadata (2.9 kB) 00:46:31 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.1) 00:46:31 Collecting dask (from ome-zarr>=0.12.0->omero-cli-zarr) 00:46:31 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB) 00:46:31 Collecting zarr>=v3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr) 00:46:31 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB) 00:46:31 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:31 Using cached fsspec-2026.1.0-py3-none-any.whl.metadata (10 kB) 00:46:32 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr) 00:46:32 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:46:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.32.5) 00:46:32 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr) 00:46:32 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 00:46:32 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr) 00:46:32 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 00:46:32 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:32 Using cached s3fs-2026.1.0-py3-none-any.whl.metadata (1.2 kB) 00:46:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4) 00:46:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0) 00:46:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.0) 00:46:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.3) 00:46:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5) 00:46:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0) 00:46:32 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:32 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB) 00:46:32 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:32 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB) 00:46:32 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:32 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB) 00:46:33 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached tifffile-2026.1.14-py3-none-any.whl.metadata (30 kB) 00:46:33 Requirement already satisfied: packaging>=21 in ./.venv3/lib64/python3.11/site-packages (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr) (26.0) 00:46:33 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB) 00:46:33 Collecting donfig>=0.8 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 00:46:33 Collecting google-crc32c>=1.5 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB) 00:46:33 Collecting numcodecs>=0.14 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB) 00:46:33 Requirement already satisfied: typing-extensions>=4.9 in ./.venv3/lib64/python3.11/site-packages (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0) 00:46:33 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB) 00:46:33 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 00:46:33 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB) 00:46:33 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 00:46:33 Collecting multidict<7.0,>=4.5 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached multidict-6.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 00:46:33 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:33 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB) 00:46:34 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:34 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB) 00:46:34 Requirement already satisfied: idna>=2.0 in 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cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) 00:46:34 Collecting botocore<1.42.31,>=1.41.0 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:34 Using cached botocore-1.42.30-py3-none-any.whl.metadata (5.9 kB) 00:46:34 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0) 00:46:34 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:34 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) 00:46:35 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) 00:46:35 Using cached wrapt-2.0.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (9.0 kB) 00:46:35 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0) 00:46:35 Using cached ome_zarr-0.12.2-py3-none-any.whl (41 kB) 00:46:35 Using cached fsspec-2026.1.0-py3-none-any.whl (201 kB) 00:46:35 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 00:46:35 Using cached imageio-2.37.2-py3-none-any.whl (317 kB) 00:46:35 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB) 00:46:35 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 00:46:35 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB) 00:46:35 Using cached tifffile-2026.1.14-py3-none-any.whl (232 kB) 00:46:35 Using cached zarr-3.1.5-py3-none-any.whl (284 kB) 00:46:35 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 00:46:35 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 00:46:35 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 00:46:35 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB) 00:46:35 Using cached multidict-6.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 00:46:35 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB) 00:46:35 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB) 00:46:35 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 00:46:35 Using cached attrs-25.4.0-py3-none-any.whl (67 kB) 00:46:35 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 00:46:35 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB) 00:46:35 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB) 00:46:35 Using cached click-8.3.1-py3-none-any.whl (108 kB) 00:46:35 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) 00:46:35 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB) 00:46:35 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 00:46:35 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 00:46:35 Using cached zipp-3.23.0-py3-none-any.whl (10 kB) 00:46:35 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 00:46:35 Using cached s3fs-2026.1.0-py3-none-any.whl (30 kB) 00:46:35 Using cached aiobotocore-3.1.1-py3-none-any.whl (87 kB) 00:46:35 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 00:46:35 Using cached botocore-1.42.30-py3-none-any.whl (14.6 MB) 00:46:35 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 00:46:35 Using cached wrapt-2.0.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB) 00:46:35 Building wheels for collected packages: omero-cli-zarr 00:46:35 Building wheel for omero-cli-zarr (pyproject.toml): started 00:46:35 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 00:46:35 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev137+g671cae3-py3-none-any.whl size=37763 sha256=dd97bdb42fd89d8d8898579249b0e4b41f031d7a4961c68c014840569f756f80 00:46:35 Stored in directory: /tmp/pip-ephem-wheel-cache-gpsrihif/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 00:46:35 Successfully built omero-cli-zarr 00:46:35 Installing collected packages: zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 00:46:45 00:46:45 Successfully installed aiobotocore-3.1.1 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.30 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.1.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.0 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.12.2 omero-cli-zarr-0.5.5.dev137+g671cae3 partd-1.4.2 propcache-0.4.1 s3fs-2026.1.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.14 toolz-1.1.0 wrapt-2.0.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0 00:46:45 + pip install omero-certificates 00:46:45 Collecting omero-certificates 00:46:46 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 00:46:46 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3) 00:46:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:46:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:46:46 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.1) 00:46:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0) 00:46:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 00:46:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:46:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5) 00:46:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 00:46:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4) 00:46:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11) 00:46:46 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3) 00:46:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4) 00:46:46 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 00:46:46 Installing collected packages: omero-certificates 00:46:46 Successfully installed omero-certificates-0.4.0 00:46:46 + for x in *.tar.gz 00:46:46 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:46:46 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:46:46 Installing build dependencies: started 00:46:47 Installing build dependencies: finished with status 'done' 00:46:47 Getting requirements to build wheel: started 00:46:47 Getting requirements to build wheel: finished with status 'done' 00:46:47 Preparing metadata (pyproject.toml): started 00:46:48 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:48 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3) 00:46:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:46:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:46:48 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.1) 00:46:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0) 00:46:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 00:46:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:46:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5) 00:46:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 00:46:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4) 00:46:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11) 00:46:48 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3) 00:46:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4) 00:46:48 Building wheels for collected packages: omero-dropbox 00:46:48 Building wheel for omero-dropbox (pyproject.toml): started 00:46:48 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:46:48 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=f011c5ca2dd248993920dd157723331e6b4af5ca4db29d0411d789a471c97771 00:46:48 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 00:46:48 Successfully built omero-dropbox 00:46:48 Installing collected packages: omero-dropbox 00:46:48 Successfully installed omero-dropbox-5.7.1.dev0 00:46:48 + for x in *.tar.gz 00:46:48 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 00:46:48 Processing ./omero_marshal-0.9.2.dev0.tar.gz 00:46:48 Installing build dependencies: started 00:46:49 Installing build dependencies: finished with status 'done' 00:46:49 Getting requirements to build wheel: started 00:46:50 Getting requirements to build wheel: finished with status 'done' 00:46:50 Preparing metadata (pyproject.toml): started 00:46:50 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:50 Building wheels for collected packages: omero_marshal 00:46:50 Building wheel for omero_marshal (pyproject.toml): started 00:46:50 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:46:50 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=948d66526d2eb27a7f2e4a6fdd96405b386966902079dcc5a61925938cae6832 00:46:50 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 00:46:50 Successfully built omero_marshal 00:46:50 Installing collected packages: omero_marshal 00:46:50 Successfully installed omero_marshal-0.9.2.dev0 00:46:50 + for x in *.tar.gz 00:46:50 + pip install -U omero_py-5.22.0.dev0.tar.gz 00:46:51 Processing ./omero_py-5.22.0.dev0.tar.gz 00:46:51 Installing build dependencies: started 00:46:52 Installing build dependencies: finished with status 'done' 00:46:52 Getting requirements to build wheel: started 00:46:52 Getting requirements to build wheel: finished with status 'done' 00:46:52 Preparing metadata (pyproject.toml): started 00:46:52 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4) 00:46:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0) 00:46:52 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.1) 00:46:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0) 00:46:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3) 00:46:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5) 00:46:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5) 00:46:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0) 00:46:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4) 00:46:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11) 00:46:52 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3) 00:46:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4) 00:46:52 Building wheels for collected packages: omero-py 00:46:52 Building wheel for omero-py (pyproject.toml): started 00:46:53 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:46:53 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786450 sha256=df95c70fddde7973726f9ee20dd8ceaf804c38422546b69f61ffa53a5547c3f1 00:46:53 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3 00:46:53 Successfully built omero-py 00:46:54 Installing collected packages: omero-py 00:46:54 Attempting uninstall: omero-py 00:46:54 Found existing installation: omero-py 5.21.3 00:46:54 Uninstalling omero-py-5.21.3: 00:46:54 Successfully uninstalled omero-py-5.21.3 00:46:56 Successfully installed omero-py-5.22.0.dev0 00:46:56 + for x in *.tar.gz 00:46:56 + pip install -U omero_scripts-5.9.2.dev0.tar.gz 00:46:56 Processing ./omero_scripts-5.9.2.dev0.tar.gz 00:46:56 Installing build dependencies: started 00:46:57 Installing build dependencies: finished with status 'done' 00:46:57 Getting requirements to build wheel: started 00:46:57 Getting requirements to build wheel: finished with status 'done' 00:46:57 Preparing metadata (pyproject.toml): started 00:46:57 Preparing metadata (pyproject.toml): finished with status 'done' 00:46:57 Building wheels for collected packages: omero-scripts 00:46:57 Building wheel for omero-scripts (pyproject.toml): started 00:46:58 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:46:58 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136992 sha256=6746692e698c70a1311b7f2ea395aa800eab52b80b531c404b36afaa6c894fa0 00:46:58 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850 00:46:58 Successfully built omero-scripts 00:46:58 Installing collected packages: omero-scripts 00:46:58 Successfully installed omero-scripts-5.9.2.dev0 00:46:58 + for x in *.tar.gz 00:46:58 + pip install -U omero_web-5.30.2.dev0.tar.gz 00:46:58 Processing ./omero_web-5.30.2.dev0.tar.gz 00:46:59 Installing build dependencies: started 00:46:59 Installing build dependencies: finished with status 'done' 00:46:59 Getting requirements to build wheel: started 00:47:00 Getting requirements to build wheel: finished with status 'done' 00:47:00 Preparing metadata (pyproject.toml): started 00:47:00 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:00 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0) 00:47:00 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0) 00:47:00 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) 00:47:00 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0) 00:47:00 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB) 00:47:00 Collecting django-pipeline (from omero-web==5.30.2.dev0) 00:47:00 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 00:47:01 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0) 00:47:01 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:47:01 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0) 00:47:01 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB) 00:47:01 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0) 00:47:01 Using cached gunicorn-24.1.1-py3-none-any.whl.metadata (4.6 kB) 00:47:01 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0) 00:47:01 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0) 00:47:01 Collecting pytz (from omero-web==5.30.2.dev0) 00:47:01 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) 00:47:01 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0) 00:47:01 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0) 00:47:01 Collecting importlib-resources (from omero-web==5.30.2.dev0) 00:47:01 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 00:47:01 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0) 00:47:01 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB) 00:47:01 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0) 00:47:01 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) 00:47:01 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4) 00:47:01 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0) 00:47:01 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.1) 00:47:01 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3) 00:47:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5) 00:47:01 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5) 00:47:01 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1) 00:47:01 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0) 00:47:01 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB) 00:47:01 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4) 00:47:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11) 00:47:01 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3) 00:47:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4) 00:47:01 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:47:01 Using cached django-5.2.10-py3-none-any.whl (8.3 MB) 00:47:01 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB) 00:47:01 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) 00:47:01 Using cached gunicorn-24.1.1-py3-none-any.whl (114 kB) 00:47:01 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) 00:47:01 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB) 00:47:01 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 00:47:01 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 00:47:01 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) 00:47:01 Using cached wheel-0.46.3-py3-none-any.whl (30 kB) 00:47:01 Building wheels for collected packages: omero-web 00:47:01 Building wheel for omero-web (pyproject.toml): started 00:47:02 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:47:02 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819317 sha256=3580edd0a121d942488969daaa42d997c4f431bc2102ea53d83201b4d33b28b9 00:47:02 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7 00:47:02 Successfully built omero-web 00:47:02 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 00:47:05 00:47:05 Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-24.1.1 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0 00:47:05 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:47:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:47:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:47:05 --2026-01-26 00:47:05-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:47:05 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.110.133, 185.199.109.133, ... 00:47:05 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 00:47:05 HTTP request sent, awaiting response... 200 OK 00:47:05 Length: 129238 (126K) [text/plain] 00:47:05 Saving to: ‘Figure_To_Pdf.py’ 00:47:05 00:47:05 0K .......... .......... .......... .......... .......... 39% 4.56M 0s 00:47:05 50K .......... .......... .......... .......... .......... 79% 9.06M 0s 00:47:05 100K .......... .......... ...... 100% 5.07M=0.02s 00:47:05 00:47:05 2026-01-26 00:47:05 (5.83 MB/s) - ‘Figure_To_Pdf.py’ saved [129238/129238] 00:47:05 00:47:05 + chmod 755 Figure_To_Pdf.py 00:47:05 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:47:05 + omero config set omero.db.name OMERO-server 00:47:07 + omero config set omero.db.host pg 00:47:09 + omero config set omero.db.user postgres 00:47:11 + omero config set omero.data.dir /home/omero/omero-server-data 00:47:13 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:47:14 + omero config set omero.db.poolsize 25 00:47:16 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:47:18 + omero config set omero.security.trustStorePassword changeit 00:47:20 + omero config set omero.mail.config true 00:47:22 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:47:24 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:47:26 + omero certificates 00:47:27 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025) 00:47:27 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:47:27 + '[' false = true ']' 00:47:27 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:47:27 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:47:27 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:47:28 2026-01-26 00:47:28,126 [ omego.db] DEBUG dbcommand => upgrade 00:47:28 2026-01-26 00:47:28,126 [ omego.db] DEBUG dbhost => localhost 00:47:28 2026-01-26 00:47:28,126 [ omego.db] DEBUG dbname => OMERO-server 00:47:28 2026-01-26 00:47:28,126 [ omego.db] DEBUG dbpass => omero 00:47:28 2026-01-26 00:47:28,126 [ omego.db] DEBUG dbuser => omero 00:47:28 2026-01-26 00:47:28,126 [ omego.db] DEBUG rootpass => omero 00:47:28 2026-01-26 00:47:28,126 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:47:28 2026-01-26 00:47:28,126 [omego.extern] INFO Executing : omero version 00:47:29 OMERO.py version: 00:47:29 OMERO.server version: 00:47:29 5.6.3-586-0f65a7e02f-ice36-b34 00:47:29 5.22.0.dev0 00:47:30 2026-01-26 00:47:30,104 [omego.extern] INFO Completed [1.978 s] 00:47:30 2026-01-26 00:47:30,104 [omego.extern] DEBUG Using omero CLI from omero 00:47:30 2026-01-26 00:47:30,104 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:47:30 2026-01-26 00:47:30,104 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:47:30 2026-01-26 00:47:30,105 [omego.extern] INFO Executing : omero config get --show-password 00:47:31 2026-01-26 00:47:31,993 [omego.extern] INFO Completed [1.888 s] 00:47:31 2026-01-26 00:47:31,993 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:47:31 2026-01-26 00:47:31,993 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:47:31 2026-01-26 00:47:31,998 [omego.extern] INFO Completed [0.005 s] 00:47:31 2026-01-26 00:47:31,999 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n' 00:47:31 2026-01-26 00:47:31,999 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11 00:47:31 00:47:31 2026-01-26 00:47:31,999 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:47:31 2026-01-26 00:47:31,999 [omego.extern] INFO Executing : omero config get --show-password 00:47:33 2026-01-26 00:47:33,883 [omego.extern] INFO Completed [1.884 s] 00:47:33 2026-01-26 00:47:33,883 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:47:33 2026-01-26 00:47:33,883 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:47:33 2026-01-26 00:47:33,891 [omego.extern] INFO Completed [0.009 s] 00:47:33 2026-01-26 00:47:33,892 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.7") at port "5432".\n' 00:47:33 2026-01-26 00:47:33,892 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:47:33 2026-01-26 00:47:33,892 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:47:33 2026-01-26 00:47:33,892 [omego.extern] INFO Executing : omero config get --show-password 00:47:35 2026-01-26 00:47:35,760 [omego.extern] INFO Completed [1.868 s] 00:47:35 2026-01-26 00:47:35,760 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:47:35 2026-01-26 00:47:35,760 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:47:35 2026-01-26 00:47:35,770 [omego.extern] INFO Completed [0.010 s] 00:47:35 2026-01-26 00:47:35,770 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:47:35 2026-01-26 00:47:35,770 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:47:35 2026-01-26 00:47:35,771 [ omego.db] INFO Database is already at OMERO5.4__0 00:47:35 + export LANG=en_US.UTF-8 00:47:35 + LANG=en_US.UTF-8 00:47:35 + export LANGUAGE=en_US:en 00:47:35 + LANGUAGE=en_US:en 00:47:35 + export LC_ALL=en_US.UTF-8 00:47:35 + LC_ALL=en_US.UTF-8 00:47:35 + BUILD_ID=DONT_KILL_ME 00:47:35 + omero admin start 00:47:40 No descriptor given. Using etc/grid/default.xml 00:47:48 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:47:48 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:47:48 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:47:48 Waiting on startup. Use CTRL-C to exit 00:47:48 + omero admin waitup 00:47:50 Waiting on startup. Use CTRL-C to exit 00:47:50 + omero admin diagnostics 00:47:52 00:47:52 ================================================================================ 00:47:52 OMERO Diagnostics (admin) 00:47:52 ================================================================================ 00:47:52 00:47:52 Commands: java -version 17.0.17 (/usr/bin/java) 00:47:52 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:47:52 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:47:52 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:47:52 Commands: psql --version 16.11 (/usr/bin/psql) 00:47:52 Commands: openssl version 3.5.11 (/usr/bin/openssl) 00:47:52 00:47:52 Component: OMERO.py 5.22.0.dev0 00:47:52 Component: OMERO.server 5.6.3-586-0f65a7e02f-ice36-b34 00:47:52 00:47:52 Server: icegridnode running 00:47:52 Server: Blitz-0 active (pid = 85625, enabled) 00:47:52 Server: Indexer-0 activating (enabled) 00:47:52 Server: OMERO.Glacier2 active (pid = 85655, enabled) 00:47:52 Server: OMERO.IceStorm active (pid = 85658, enabled) 00:47:52 Server: Processor-0 active (pid = 85666, enabled) 00:47:52 Server: Tables-0 active (pid = 85679, enabled) 00:47:52 00:47:52 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:47:52 Log files: Blitz-0.log 33.2 KB errors=0 warnings=1 00:47:52 Log files: DropBox.log n/a 00:47:52 Log files: FileServer.log n/a 00:47:52 Log files: Indexer-0.log 238 B 00:47:52 Log files: MonitorServer.log n/a 00:47:52 Log files: Processor-0.log 735 B 00:47:52 Log files: Tables-0.log 961 B 00:47:52 Log files: TestDropBox.log n/a 00:47:52 Log files: master.err empty 00:47:52 Log files: master.out 30.5 KB 00:47:52 Log files: Total size 0.07 MB 00:47:52 00:47:52 00:47:52 Environment:OMERO_HOME=(unset) 00:47:52 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:52 Environment:OMERO_NODE=(unset) 00:47:52 Environment:OMERO_MASTER=(unset) 00:47:52 Environment:OMERO_USERDIR=(unset) 00:47:52 Environment:OMERO_TMPDIR=(unset) 00:47:52 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:52 Environment:PYTHONPATH=(unset) 00:47:52 Environment:ICE_HOME=/opt/ice-3.6.5 00:47:52 Environment:LD_LIBRARY_PATH=(unset) 00:47:52 Environment:DYLD_LIBRARY_PATH=(unset) 00:47:52 00:47:52 OMERO SSL port:4064 00:47:52 OMERO TCP port:4063 00:47:52 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:47:52 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:47:52 00:47:52 JVM settings: Blitz-${index} -Xmx7200m 00:47:52 JVM settings: Indexer-${index} -Xmx4800m 00:47:52 JVM settings: PixelData-${index} -Xmx7200m 00:47:52 JVM settings: Repository-${index} -Xmx4800m 00:47:52 00:47:52 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 26 January 2026 4933629ab925127b63433153e63dca116b2ab826 00:47:52 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 26 January 2026 4933629ab925127b63433153e63dca116b2ab826 00:47:52 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 26 January 2026 4933629ab925127b63433153e63dca116b2ab826 00:47:52 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 26 January 2026 132c275b6ce79fbde44d13d8956f81cd94523558 00:47:52 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 26 January 2026 132c275b6ce79fbde44d13d8956f81cd94523558 00:47:52 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 26 January 2026 132c275b6ce79fbde44d13d8956f81cd94523558 00:47:52 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 26 January 2026 132c275b6ce79fbde44d13d8956f81cd94523558 00:47:52 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 26 January 2026 132c275b6ce79fbde44d13d8956f81cd94523558 00:47:52 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 26 January 2026 132c275b6ce79fbde44d13d8956f81cd94523558 00:47:52 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT 00:47:52 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT 00:47:52 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT 00:47:52 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT 00:47:52 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT 00:47:52 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT 00:47:52 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT 00:47:52 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 9f3aef3d619f41fb3a5e78352a9b7bb79a50afbb 00:47:53 + deactivate 00:47:53 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:47:53 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:53 + export PATH 00:47:53 + unset _OLD_VIRTUAL_PATH 00:47:53 + '[' -n '' ']' 00:47:53 + hash -r 00:47:53 + '[' -n '' ']' 00:47:53 + unset VIRTUAL_ENV 00:47:53 + unset VIRTUAL_ENV_PROMPT 00:47:53 + '[' '!' '' = nondestructive ']' 00:47:53 + unset -f deactivate 00:47:53 Finished: SUCCESS