23:49:24 Started by upstream project "Trigger" build number 118 23:49:24 originally caused by: 23:49:24 Started by timer 23:49:24 Running as SYSTEM 23:49:24 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 23:49:24 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9155099693296057950.sh 23:49:24 + source /home/settings.env 23:49:24 ++ OMERO_DB_HOST=pg 23:49:24 ++ OMERO_DB_USER=postgres 23:49:24 ++ OMERO_DB_PASS= 23:49:24 ++ OMERO_ROOT_PASS=omero 23:49:24 ++ OMERO_DATA_DIR=/OMERO 23:49:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 23:49:24 + OMERO_DB_NAME=OMERO-server 23:49:24 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 23:49:24 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:49:24 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:49:24 + OMERO_DATA_DIR=/home/omero/omero-server-data 23:49:24 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 23:49:24 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 23:49:24 ++ deactivate nondestructive 23:49:24 ++ '[' -n '' ']' 23:49:24 ++ '[' -n '' ']' 23:49:24 ++ hash -r 23:49:24 ++ '[' -n '' ']' 23:49:24 ++ unset VIRTUAL_ENV 23:49:24 ++ unset VIRTUAL_ENV_PROMPT 23:49:24 ++ '[' '!' nondestructive = nondestructive ']' 23:49:24 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 23:49:24 ++ export VIRTUAL_ENV 23:49:24 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:49:24 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:49:24 ++ export PATH 23:49:24 ++ '[' -n '' ']' 23:49:24 ++ '[' -z '' ']' 23:49:24 ++ _OLD_VIRTUAL_PS1= 23:49:24 ++ PS1='(.venv3) ' 23:49:24 ++ export PS1 23:49:24 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 23:49:24 ++ export VIRTUAL_ENV_PROMPT 23:49:24 ++ hash -r 23:49:24 + omero admin stop 23:49:59 Waiting on shutdown. Use CTRL-C to exit 23:49:59 .+ sleep 5 23:50:14 + deactivate 23:50:14 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 23:50:14 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:50:14 + export PATH 23:50:14 + unset _OLD_VIRTUAL_PATH 23:50:14 + '[' -n '' ']' 23:50:14 + hash -r 23:50:14 + '[' -n '' ']' 23:50:14 + unset VIRTUAL_ENV 23:50:14 + unset VIRTUAL_ENV_PROMPT 23:50:14 + '[' '!' '' = nondestructive ']' 23:50:14 + unset -f deactivate 23:50:14 + rm -rf /home/omero/workspace/OMERO-server/.venv3 23:53:05 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 23:53:26 + '[' false = true ']' 23:53:26 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 23:53:26 Skipping PURGE_DATA:CleanDbAndRepo 23:53:26 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 23:53:36 Copied 1 artifact from "OMERO-build" build number 99 23:53:36 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 89 23:53:36 Copied 2 artifacts from "OMERO-build-build" build number 100 23:53:37 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13356560622390907427.sh 23:53:37 + source /home/settings.env 23:53:37 ++ OMERO_DB_HOST=pg 23:53:37 ++ OMERO_DB_USER=postgres 23:53:37 ++ OMERO_DB_PASS= 23:53:37 ++ OMERO_ROOT_PASS=omero 23:53:37 ++ OMERO_DATA_DIR=/OMERO 23:53:37 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 23:53:37 + OMERO_DB_NAME=OMERO-server 23:53:37 + OMERO_DATA_DIR=/home/omero/omero-server-data 23:53:37 + mkdir -p /home/omero/omero-server-data 23:53:37 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 23:53:37 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:53:37 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:53:37 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 23:53:37 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 23:53:37 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 23:53:37 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 23:53:37 ++ ls OMERO.server-5.6.3-689-760e8ed105-ice36-b99.zip 23:53:37 + ZIP=OMERO.server-5.6.3-689-760e8ed105-ice36-b99.zip 23:53:37 + '[' '!' -z '' ']' 23:53:37 + DIST=OMERO.server-5.6.3-689-760e8ed105-ice36-b99 23:53:37 + unzip OMERO.server-5.6.3-689-760e8ed105-ice36-b99.zip 23:53:37 Archive: OMERO.server-5.6.3-689-760e8ed105-ice36-b99.zip 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/blitz/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/grid/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/profiles/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/error/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/grid/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/luts/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/luts/janelia/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/luts/matplotlib/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/luts/ncsa_paledit/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/luts/seaborn/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/luts/wcif/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/omero/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/omero/analysis_scripts/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/omero/annotation_scripts/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/omero/export_scripts/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/omero/figure_scripts/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/omero/import_scripts/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/scripts/omero/util_scripts/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/server/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/misc/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__1/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__10/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__11/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__2/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__3/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__4/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__5/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__6/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__7/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__8/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3A__9/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3__4/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3__5/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3__6/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO3__7/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO4.1__0/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO4.2__0/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO4.2__0/t/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO4.3__0/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO4.4__0/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO4__0/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.0__0/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.1__1/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.2__0/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.3__0/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4DEV__1/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4DEV__2/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4DEV__3/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/var/ 23:53:37 creating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/var/tmp/ 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/LICENSE.txt 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/backup.cfg 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/blitz/mail-senders.example 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/blitz/mail-server.example 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/build.properties 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/env.bat 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/env.sh 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/hibernate.properties 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/ice.config 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/logback-cli.xml 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/logback-indexing-cli.xml 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/logback-indexing.xml 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/logback.xml 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/mime.types 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/node1.cfg 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/node2.cfg 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/omero.properties 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/profiles/psql 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/rollover.cfg 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/Windows.cfg 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/error/maintainance.html 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/grid/README 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/grid/default.xml 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/grid/templates.xml 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/grid/windefault.xml 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/ice.config 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/internal.cfg 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/master.cfg 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/templates/robot.template 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/etc/testdropbox.config 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/history.rst 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/accessors-smart.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/activation.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/aggdesigner-algorithm.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/aircompressor.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/annotations.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/antlr.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/aopalliance.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/apache-client.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/apiguardian-api.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/arns.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/asm.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/auth.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/avatica-core.jar 23:53:37 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/avatica-metrics.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/aws-core.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/aws-query-protocol.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/aws-xml-protocol.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/base.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-anim.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-awt-util.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-bridge.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-codec.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-constants.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-css.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-dom.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-ext.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-gvt.jar 23:53:38 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/lib/client/batik-i18n.jar 23:53:38 inflating: 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23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/npl-1_1.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/path.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/pil.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/postgresql.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/psf-v2.0.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/psf-v2.5.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/scons.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/slf4j.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/tablelayout.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/which.txt 23:53:57 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/share/licenses/zlib-libpng.txt 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OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/psql-footer.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/psql-header.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/schema.sql 23:53:58 inflating: OMERO.server-5.6.3-689-760e8ed105-ice36-b99/sql/psql/OMERO5.4__0/views.sql 23:53:58 + rm -f OMERO.server-5.6.3-689-760e8ed105-ice36-b99.zip 23:53:58 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-689-760e8ed105-ice36-b99 /home/omero/workspace/OMERO-server/OMERO.server 23:53:58 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 23:53:58 ++ deactivate nondestructive 23:53:58 ++ '[' -n '' ']' 23:53:58 ++ '[' -n '' ']' 23:53:58 ++ hash -r 23:53:58 ++ '[' -n '' ']' 23:53:58 ++ unset VIRTUAL_ENV 23:53:58 ++ unset VIRTUAL_ENV_PROMPT 23:53:58 ++ '[' '!' nondestructive = nondestructive ']' 23:53:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 23:53:58 ++ export VIRTUAL_ENV 23:53:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:53:58 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:53:58 ++ export PATH 23:53:58 ++ '[' -n '' ']' 23:53:58 ++ '[' -z '' ']' 23:53:58 ++ _OLD_VIRTUAL_PS1= 23:53:58 ++ PS1='(.venv3) ' 23:53:58 ++ export PS1 23:53:58 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 23:53:58 ++ export VIRTUAL_ENV_PROMPT 23:53:58 ++ hash -r 23:53:58 + pip install -U pip 23:53:59 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 23:54:00 Collecting pip 23:54:00 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 23:54:00 Installing collected packages: pip 23:54:00 Attempting uninstall: pip 23:54:00 Found existing installation: pip 22.3.1 23:54:01 Uninstalling pip-22.3.1: 23:54:01 Successfully uninstalled pip-22.3.1 23:54:14 Successfully installed pip-26.2.1 23:54:14 WARNING: There was an error checking the latest version of pip. 23:54:14 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 23:54:15 Collecting zeroc-ice==3.6.5 23:54:15 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 23:54:18 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.3 MB/s 0:00:02 23:54:18 Installing collected packages: zeroc-ice 23:54:21 Successfully installed zeroc-ice-3.6.5 23:54:22 + pip install markdown 23:54:23 Collecting markdown 23:54:23 Using cached markdown-3.11-py3-none-any.whl.metadata (5.1 kB) 23:54:23 Using cached markdown-3.11-py3-none-any.whl (111 kB) 23:54:23 Installing collected packages: markdown 23:54:24 Successfully installed markdown-3.11 23:54:24 + pip install reportlab 23:54:25 Collecting reportlab 23:54:25 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB) 23:54:25 Collecting pillow>=9.0.0 (from reportlab) 23:54:25 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 23:54:25 Collecting charset-normalizer (from reportlab) 23:54:25 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) 23:54:25 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB) 23:54:26 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 23:54:26 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) 23:54:26 Installing collected packages: pillow, charset-normalizer, reportlab 23:54:34 23:54:34 Successfully installed charset-normalizer-3.5.2 pillow-12.3.0 reportlab-5.0.1 23:54:34 + pip install pyarrow 23:54:35 Collecting pyarrow 23:54:35 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB) 23:54:36 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (50.1 MB) 23:54:36 Installing collected packages: pyarrow 23:54:47 Successfully installed pyarrow-25.0.1 23:54:47 + pip install omego 23:54:48 Collecting omego 23:54:48 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 23:54:48 Collecting future (from omego) 23:54:48 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 23:54:49 Collecting yaclifw>=0.1.1 (from omego) 23:54:49 Using cached yaclifw-0.2.0-py3-none-any.whl 23:54:49 Collecting six (from yaclifw>=0.1.1->omego) 23:54:49 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 23:54:49 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 23:54:49 Using cached future-1.0.0-py3-none-any.whl (491 kB) 23:54:49 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 23:54:49 Installing collected packages: six, future, yaclifw, omego 23:54:55 23:54:55 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 23:54:55 + pip install tables 23:54:56 Collecting tables 23:54:56 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 23:54:56 Collecting numpy>=1.20.0 (from tables) 23:54:56 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 23:54:56 Collecting numexpr>=2.6.2 (from tables) 23:54:56 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 23:54:56 Collecting packaging (from tables) 23:54:56 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 23:54:56 Collecting py-cpuinfo (from tables) 23:54:57 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 23:54:57 Collecting blosc2>=2.3.0 (from tables) 23:54:57 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.0 kB) 23:54:57 Collecting ndindex (from blosc2>=2.3.0->tables) 23:54:57 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 23:54:57 Collecting msgpack (from blosc2>=2.3.0->tables) 23:54:57 Using cached msgpack-1.2.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 23:54:57 Collecting pydantic (from blosc2>=2.3.0->tables) 23:54:58 Using cached pydantic-2.13.5-py3-none-any.whl.metadata (110 kB) 23:54:58 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 23:54:58 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 23:54:58 Collecting rich (from blosc2>=2.3.0->tables) 23:54:58 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 23:54:58 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 23:54:58 Using cached threadpoolctl-3.7.0-py3-none-any.whl.metadata (24 kB) 23:54:58 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 23:54:58 Using cached anyio-4.15.1-py3-none-any.whl.metadata (4.7 kB) 23:54:58 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 23:54:58 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 23:54:58 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 23:54:58 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 23:54:58 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 23:54:59 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) 23:54:59 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 23:54:59 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 23:54:59 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 23:54:59 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 23:54:59 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 23:54:59 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 23:54:59 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 23:54:59 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 23:54:59 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 23:54:59 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 23:54:59 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 23:54:59 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 23:55:00 Collecting pydantic-core==2.46.5 (from pydantic->blosc2>=2.3.0->tables) 23:55:00 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 23:55:00 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 23:55:00 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 23:55:00 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 23:55:00 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 23:55:00 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 23:55:00 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) 23:55:01 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 23:55:01 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 23:55:01 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 23:55:01 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.7 MB) 23:55:01 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 23:55:01 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 23:55:01 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 23:55:01 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 23:55:01 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 23:55:01 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 23:55:01 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 23:55:01 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 23:55:01 Using cached anyio-4.15.1-py3-none-any.whl (132 kB) 23:55:01 Using cached idna-3.20-py3-none-any.whl (69 kB) 23:55:01 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 23:55:01 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 23:55:01 Using cached msgpack-1.2.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (477 kB) 23:55:02 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 23:55:02 Using cached packaging-26.3-py3-none-any.whl (129 kB) 23:55:02 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 23:55:02 Using cached pydantic-2.13.5-py3-none-any.whl (472 kB) 23:55:02 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 23:55:02 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 23:55:02 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 23:55:02 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 23:55:02 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) 23:55:02 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 23:55:02 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 23:55:02 Using cached threadpoolctl-3.7.0-py3-none-any.whl (26 kB) 23:55:03 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 23:55:50 23:55:50 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.14.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.3 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.5 pydantic-core-2.46.5 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.7.0 typing-inspection-0.4.4 typing_extensions-4.16.0 23:55:51 + pip install jinja2 23:55:52 Collecting jinja2 23:55:52 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 23:55:52 Collecting MarkupSafe>=2.0 (from jinja2) 23:55:52 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 23:55:52 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 23:55:52 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 23:55:52 Installing collected packages: MarkupSafe, jinja2 23:55:53 23:55:53 Successfully installed MarkupSafe-3.0.4 jinja2-3.1.6 23:55:53 + pip install omero-py 23:55:54 Collecting omero-py 23:55:54 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 23:55:54 Collecting appdirs (from omero-py) 23:55:54 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 23:55:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 23:55:54 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 23:55:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 23:55:55 Collecting PyYAML (from omero-py) 23:55:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 23:55:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 23:55:55 Collecting requests (from omero-py) 23:55:55 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 23:55:55 Collecting portalocker (from omero-py) 23:55:55 Using cached portalocker-4.4.0-py3-none-any.whl.metadata (10 kB) 23:55:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.2) 23:55:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.20) 23:55:55 Collecting urllib3<3,>=1.26 (from requests->omero-py) 23:55:55 Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB) 23:55:55 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 23:55:55 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 23:55:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 23:55:55 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB) 23:55:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 23:55:56 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 23:55:56 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB) 23:55:56 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 23:56:13 23:56:13 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 urllib3-2.8.0 23:56:13 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 23:56:14 Collecting omero-metadata 23:56:14 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-snypdtqr/omero-metadata_6ed87e6c541e4f9d938f39fcb56405c6 23:56:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-snypdtqr/omero-metadata_6ed87e6c541e4f9d938f39fcb56405c6 23:56:15 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 486c5f21afae5ade03bdc423b3b71cc445b4569b 23:56:15 Installing build dependencies: started 23:56:17 Installing build dependencies: finished with status 'done' 23:56:17 Getting requirements to build wheel: started 23:56:17 Getting requirements to build wheel: finished with status 'done' 23:56:17 Preparing metadata (pyproject.toml): started 23:56:17 Preparing metadata (pyproject.toml): finished with status 'done' 23:56:17 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 23:56:17 Collecting pandas<3,>=2 (from omero-metadata) 23:56:17 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 23:56:17 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 23:56:18 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 23:56:18 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 23:56:18 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 23:56:18 Using cached pytz-2026.4-py2.py3-none-any.whl.metadata (22 kB) 23:56:18 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 23:56:18 Downloading tzdata-2026.5-py2.py3-none-any.whl.metadata (1.4 kB) 23:56:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 23:56:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 23:56:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 23:56:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 23:56:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 23:56:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 23:56:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.4.0) 23:56:18 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 23:56:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.2) 23:56:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20) 23:56:18 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0) 23:56:18 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 23:56:18 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 23:56:18 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 23:56:19 Using cached pytz-2026.4-py2.py3-none-any.whl (506 kB) 23:56:19 Downloading tzdata-2026.5-py2.py3-none-any.whl (347 kB) 23:56:19 Building wheels for collected packages: omero-metadata 23:56:19 Building wheel for omero-metadata (pyproject.toml): started 23:56:19 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 23:56:19 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=cd006d5f14dbfda4c4f150551e46d3cdc2c16897ea9766deb98a0847b75698cb 23:56:19 Stored in directory: /tmp/pip-ephem-wheel-cache-pbbz41eh/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 23:56:19 Successfully built omero-metadata 23:56:19 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 23:57:09 23:57:09 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.4 tzdata-2026.5 23:57:09 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 23:57:10 Collecting omero-cli-render 23:57:10 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-9p4k6dc9/omero-cli-render_0497c031b3c347b6842d37e87bbdf41d 23:57:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-9p4k6dc9/omero-cli-render_0497c031b3c347b6842d37e87bbdf41d 23:57:11 Running command git checkout -b merge_ci --track origin/merge_ci 23:57:12 Switched to a new branch 'merge_ci' 23:57:12 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:57:12 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 69a5fd700fe59be19e020ff052b788d622967953 23:57:12 Installing build dependencies: started 23:57:13 Installing build dependencies: finished with status 'done' 23:57:13 Getting requirements to build wheel: started 23:57:13 Getting requirements to build wheel: finished with status 'done' 23:57:13 Preparing metadata (pyproject.toml): started 23:57:14 Preparing metadata (pyproject.toml): finished with status 'done' 23:57:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 23:57:14 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 23:57:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 23:57:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 23:57:14 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 23:57:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 23:57:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 23:57:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 23:57:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.4.0) 23:57:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.2) 23:57:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20) 23:57:14 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0) 23:57:14 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 23:57:14 Building wheels for collected packages: omero-cli-render 23:57:14 Building wheel for omero-cli-render (pyproject.toml): started 23:57:14 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 23:57:14 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=5e173da36bfcdfbb98bf2e031e8479641917bc165502b502a34baa309b9aa6c3 23:57:14 Stored in directory: /tmp/pip-ephem-wheel-cache-daqgbigb/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 23:57:14 Successfully built omero-cli-render 23:57:14 Installing collected packages: omero-cli-render 23:57:14 Successfully installed omero-cli-render-0.8.2.dev0 23:57:14 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 23:57:15 Collecting omero-cli-duplicate 23:57:15 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-4yslir5q/omero-cli-duplicate_7746c52adfe84fa2a775a5c96ce9cab7 23:57:15 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-4yslir5q/omero-cli-duplicate_7746c52adfe84fa2a775a5c96ce9cab7 23:57:16 Running command git checkout -b merge_ci --track origin/merge_ci 23:57:17 Switched to a new branch 'merge_ci' 23:57:17 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:57:17 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 42ce86a7d3621c4e2ee9cb31d0e5a369c3e98929 23:57:17 Installing build dependencies: started 23:57:18 Installing build dependencies: finished with status 'done' 23:57:18 Getting requirements to build wheel: started 23:57:18 Getting requirements to build wheel: finished with status 'done' 23:57:18 Preparing metadata (pyproject.toml): started 23:57:18 Preparing metadata (pyproject.toml): finished with status 'done' 23:57:18 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 23:57:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 23:57:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 23:57:18 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 23:57:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 23:57:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 23:57:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 23:57:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 23:57:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.4.0) 23:57:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.2) 23:57:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20) 23:57:18 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0) 23:57:18 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 23:57:18 Building wheels for collected packages: omero-cli-duplicate 23:57:18 Building wheel for omero-cli-duplicate (pyproject.toml): started 23:57:19 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 23:57:19 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=d3a497a9654d175fe13c392437b43b4ef784eecf10df76462ef59fe62977823c 23:57:19 Stored in directory: /tmp/pip-ephem-wheel-cache-m86zvb_f/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 23:57:19 Successfully built omero-cli-duplicate 23:57:19 Installing collected packages: omero-cli-duplicate 23:57:19 Successfully installed omero-cli-duplicate-0.4.1.dev0 23:57:19 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 23:57:20 Collecting omero-cli-zarr 23:57:20 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-qs4b_amn/omero-cli-zarr_21112746d39743f2b08efe6908150dc7 23:57:20 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-qs4b_amn/omero-cli-zarr_21112746d39743f2b08efe6908150dc7 23:57:21 Running command git checkout -b merge_ci --track origin/merge_ci 23:57:21 Switched to a new branch 'merge_ci' 23:57:21 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:57:21 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 1d1ca7df0a7e5235833bdcc668eba5c574a714f1 23:57:21 Installing build dependencies: started 23:57:22 Installing build dependencies: finished with status 'done' 23:57:22 Getting requirements to build wheel: started 23:57:23 Getting requirements to build wheel: finished with status 'done' 23:57:23 Installing backend dependencies: started 23:57:24 Installing backend dependencies: finished with status 'done' 23:57:24 Preparing metadata (pyproject.toml): started 23:57:25 Preparing metadata (pyproject.toml): finished with status 'done' 23:57:25 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 23:57:25 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 23:57:25 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 23:57:25 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 23:57:25 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:57:25 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB) 23:57:25 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:57:25 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 23:57:25 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:25 Using cached fsspec-2026.9.0-py3-none-any.whl.metadata (10 kB) 23:57:26 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 23:57:26 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 23:57:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 23:57:26 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:57:26 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 23:57:26 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 23:57:26 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 23:57:27 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 23:57:27 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 23:57:27 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:57:27 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 23:57:27 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 23:57:27 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 23:57:27 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:27 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB) 23:57:27 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:27 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 23:57:27 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 23:57:27 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:27 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 23:57:28 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 23:57:28 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:28 Using cached importlib_metadata-9.0.1-py3-none-any.whl.metadata (4.5 kB) 23:57:28 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:28 Using cached s3fs-2026.9.0-py3-none-any.whl.metadata (1.2 kB) 23:57:28 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:28 Downloading zipp-4.1.1-py3-none-any.whl.metadata (3.6 kB) 23:57:28 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:28 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB) 23:57:28 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:28 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) 23:57:28 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0) 23:57:29 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:29 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) 23:57:29 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0) 23:57:29 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.4) 23:57:29 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s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:29 Using cached aiobotocore-3.9.2-py3-none-any.whl.metadata (32 kB) 23:57:30 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:30 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) 23:57:30 Collecting botocore<1.43.107,>=1.43.101 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:30 Using cached botocore-1.43.106-py3-none-any.whl.metadata (5.6 kB) 23:57:30 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:30 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) 23:57:30 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:30 Using cached multidict-6.9.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 23:57:30 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0) 23:57:31 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:31 Using cached wrapt-2.5.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.6 kB) 23:57:31 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:31 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB) 23:57:31 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:31 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 23:57:31 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:31 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB) 23:57:32 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:32 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 23:57:32 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:32 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (25 kB) 23:57:32 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:32 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (111 kB) 23:57:32 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.107,>=1.43.101->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.8.0) 23:57:32 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0) 23:57:32 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.20) 23:57:32 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:33 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB) 23:57:33 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:33 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB) 23:57:33 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:33 Using cached imageio-2.38.0-py3-none-any.whl.metadata (9.7 kB) 23:57:33 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:33 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB) 23:57:33 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:33 Using cached lazy_loader-0.6-py3-none-any.whl.metadata (6.0 kB) 23:57:33 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:33 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 23:57:33 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:33 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.2 kB) 23:57:34 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:57:34 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB) 23:57:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.5.2) 23:57:34 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22) 23:57:34 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB) 23:57:34 Using cached dask-2026.8.0-py3-none-any.whl (1.5 MB) 23:57:34 Using cached click-8.5.0-py3-none-any.whl (125 kB) 23:57:34 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) 23:57:34 Using cached fsspec-2026.9.0-py3-none-any.whl (221 kB) 23:57:34 Using cached importlib_metadata-9.0.1-py3-none-any.whl (27 kB) 23:57:34 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB) 23:57:34 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB) 23:57:34 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 23:57:34 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 23:57:34 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 23:57:34 Using cached s3fs-2026.9.0-py3-none-any.whl (33 kB) 23:57:34 Using cached aiobotocore-3.9.2-py3-none-any.whl (102 kB) 23:57:34 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 23:57:34 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 23:57:34 Using cached botocore-1.43.106-py3-none-any.whl (16.0 MB) 23:57:35 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 23:57:35 Using cached multidict-6.9.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (320 kB) 23:57:35 Using cached wrapt-2.5.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (239 kB) 23:57:35 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (117 kB) 23:57:35 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 23:57:35 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 23:57:35 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 23:57:35 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 23:57:35 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (235 kB) 23:57:35 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 23:57:35 Using cached imageio-2.38.0-py3-none-any.whl (328 kB) 23:57:35 Using cached lazy_loader-0.6-py3-none-any.whl (8.8 kB) 23:57:35 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 23:57:35 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 23:57:36 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 23:57:36 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 23:57:36 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 23:57:36 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 23:57:36 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (36 kB) 23:57:36 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 23:57:36 Downloading zipp-4.1.1-py3-none-any.whl (10 kB) 23:57:36 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 23:57:36 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 23:57:36 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 23:57:36 Building wheels for collected packages: omero-cli-zarr 23:57:36 Building wheel for omero-cli-zarr (pyproject.toml): started 23:57:37 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 23:57:37 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g1d1ca7d-py3-none-any.whl size=39540 sha256=c86898dc8e1528cf60509a6ab50dd756053654ba4947ced6cea11b5c94345c5b 23:57:37 Stored in directory: /tmp/pip-ephem-wheel-cache-umwsj0hp/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 23:57:37 Successfully built omero-cli-zarr 23:57:37 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 23:58:12 Attempting uninstall: pydantic-core 23:58:12 Found existing installation: pydantic_core 2.46.5 23:58:12 Uninstalling pydantic_core-2.46.5: 23:58:12 Successfully uninstalled pydantic_core-2.46.5 23:58:45 Attempting uninstall: pydantic 23:58:45 Found existing installation: pydantic 2.13.5 23:58:46 Uninstalling pydantic-2.13.5: 23:58:46 Successfully uninstalled pydantic-2.13.5 23:59:27 23:59:27 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.2 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.106 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.9.0 google-crc32c-1.9.0 imageio-2.38.0 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.6 locket-1.0.0 multidict-6.9.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g1d1ca7d partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.9.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.5.0 yarl-1.25.1 zarr-3.1.6 zipp-4.1.1 23:59:27 + pip install omero-certificates 23:59:29 Collecting omero-certificates 23:59:29 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 23:59:29 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 23:59:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 23:59:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 23:59:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 23:59:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 23:59:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 23:59:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 23:59:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 23:59:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.4.0) 23:59:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.2) 23:59:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20) 23:59:29 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0) 23:59:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 23:59:29 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 23:59:29 Installing collected packages: omero-certificates 23:59:29 Successfully installed omero-certificates-0.4.0 23:59:29 + for x in *.tar.gz 23:59:29 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 23:59:30 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 23:59:30 Installing build dependencies: started 23:59:32 Installing build dependencies: finished with status 'done' 23:59:32 Getting requirements to build wheel: started 23:59:32 Getting requirements to build wheel: finished with status 'done' 23:59:32 Preparing metadata (pyproject.toml): started 23:59:32 Preparing metadata (pyproject.toml): finished with status 'done' 23:59:32 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 23:59:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 23:59:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 23:59:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 23:59:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 23:59:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 23:59:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 23:59:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 23:59:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.4.0) 23:59:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.2) 23:59:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20) 23:59:32 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0) 23:59:32 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 23:59:32 Building wheels for collected packages: omero-dropbox 23:59:32 Building wheel for omero-dropbox (pyproject.toml): started 23:59:33 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 23:59:33 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=0867dc1d54739453049ea329b73143c25346790686a0c2d495dcffea870d2eec 23:59:33 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 23:59:33 Successfully built omero-dropbox 23:59:33 Installing collected packages: omero-dropbox 23:59:34 Successfully installed omero-dropbox-5.7.1.dev0 23:59:34 + for x in *.tar.gz 23:59:34 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 23:59:35 Processing ./omero_marshal-0.9.2.dev0.tar.gz 23:59:35 Installing build dependencies: started 23:59:36 Installing build dependencies: finished with status 'done' 23:59:36 Getting requirements to build wheel: started 23:59:36 Getting requirements to build wheel: finished with status 'done' 23:59:36 Preparing metadata (pyproject.toml): started 23:59:37 Preparing metadata (pyproject.toml): finished with status 'done' 23:59:37 Building wheels for collected packages: omero_marshal 23:59:37 Building wheel for omero_marshal (pyproject.toml): started 23:59:37 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 23:59:37 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=f469538d8701e8b8a78e1f94bc20e3fc1dae02e5efd7be0b4bd239eefdcc471d 23:59:37 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 23:59:37 Successfully built omero_marshal 23:59:37 Installing collected packages: omero_marshal 23:59:40 Successfully installed omero_marshal-0.9.2.dev0 23:59:40 + for x in *.tar.gz 23:59:40 + pip install -U omero_py-5.23.1.dev0.tar.gz 23:59:41 Processing ./omero_py-5.23.1.dev0.tar.gz 23:59:41 Installing build dependencies: started 23:59:43 Installing build dependencies: finished with status 'done' 23:59:43 Getting requirements to build wheel: started 23:59:43 Getting requirements to build wheel: finished with status 'done' 23:59:43 Preparing metadata (pyproject.toml): started 23:59:44 Preparing metadata (pyproject.toml): finished with status 'done' 23:59:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 23:59:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 23:59:44 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 23:59:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 23:59:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 23:59:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 23:59:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 23:59:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.4.0) 23:59:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.2) 23:59:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20) 23:59:44 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0) 23:59:44 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 23:59:44 Building wheels for collected packages: omero-py 23:59:44 Building wheel for omero-py (pyproject.toml): started 23:59:45 Building wheel for omero-py (pyproject.toml): finished with status 'done' 23:59:45 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787194 sha256=7b55a2c0f27ffa2048dd4360c8d22a4762f954e76aad584955192af71bf342a5 23:59:45 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 23:59:45 Successfully built omero-py 23:59:45 Installing collected packages: omero-py 23:59:45 Attempting uninstall: omero-py 23:59:45 Found existing installation: omero-py 5.23.0 23:59:46 Uninstalling omero-py-5.23.0: 00:00:00 Successfully uninstalled omero-py-5.23.0 00:00:19 Successfully installed omero-py-5.23.1.dev0 00:00:19 + for x in *.tar.gz 00:00:19 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 00:00:20 Processing ./omero_scripts-5.10.1.dev0.tar.gz 00:00:20 Installing build dependencies: started 00:00:22 Installing build dependencies: finished with status 'done' 00:00:22 Getting requirements to build wheel: started 00:00:22 Getting requirements to build wheel: finished with status 'done' 00:00:22 Preparing metadata (pyproject.toml): started 00:00:22 Preparing metadata (pyproject.toml): finished with status 'done' 00:00:22 Building wheels for collected packages: omero-scripts 00:00:23 Building wheel for omero-scripts (pyproject.toml): started 00:00:23 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:00:23 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=201d42195d8e38c827d49a2c60f1024a4f7c175ef277edeca72aa3e24f519c15 00:00:23 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 00:00:23 Successfully built omero-scripts 00:00:23 Installing collected packages: omero-scripts 00:00:24 Successfully installed omero-scripts-5.10.1.dev0 00:00:24 + for x in *.tar.gz 00:00:24 + pip install -U omero_web-5.33.3.dev0.tar.gz 00:00:25 Processing ./omero_web-5.33.3.dev0.tar.gz 00:00:26 Installing build dependencies: started 00:00:28 Installing build dependencies: finished with status 'done' 00:00:28 Getting requirements to build wheel: started 00:00:28 Getting requirements to build wheel: finished with status 'done' 00:00:28 Preparing metadata (pyproject.toml): started 00:00:28 Preparing metadata (pyproject.toml): finished with status 'done' 00:00:28 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (5.23.1.dev0) 00:00:29 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.3.dev0) 00:00:29 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 00:00:29 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.3.dev0) 00:00:29 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB) 00:00:29 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.3.dev0) 00:00:29 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 00:00:29 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.3.dev0) 00:00:29 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:00:29 Collecting whitenoise>=5.3.0 (from omero-web==5.33.3.dev0) 00:00:29 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 00:00:30 Collecting gunicorn>=19.3 (from omero-web==5.33.3.dev0) 00:00:30 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB) 00:00:30 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (0.9.2.dev0) 00:00:30 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (12.3.0) 00:00:30 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (2026.4) 00:00:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (4.4.0) 00:00:30 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (26.3) 00:00:30 Collecting importlib-resources (from omero-web==5.33.3.dev0) 00:00:30 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 00:00:30 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 00:00:30 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 00:00:30 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 00:00:30 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 00:00:30 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) (65.5.1) 00:00:30 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) 00:00:30 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 00:00:30 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.4.4) 00:00:30 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.0.0) 00:00:30 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.4.6) 00:00:30 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (6.0.3) 00:00:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.6.5) 00:00:30 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.34.2) 00:00:30 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.5.2) 00:00:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.20) 00:00:30 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.8.0) 00:00:30 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2026.7.22) 00:00:30 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:00:30 Using cached django-5.2.17-py3-none-any.whl (8.3 MB) 00:00:30 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 00:00:31 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 00:00:31 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 00:00:31 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB) 00:00:31 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 00:00:31 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 00:00:31 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 00:00:31 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 00:00:31 Building wheels for collected packages: omero-web 00:00:31 Building wheel for omero-web (pyproject.toml): started 00:00:32 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:00:32 Created wheel for omero-web: filename=omero_web-5.33.3.dev0-py3-none-any.whl size=2821707 sha256=9cb18de0dd45a22ddfb917462740db06cb3d714b5847112a297c32e7f3cba62d 00:00:32 Stored in directory: /home/omero/.cache/pip/wheels/f9/cc/88/86aa2065a36d21a568dcadc16454372077670d9ca1a7b14a82 00:00:32 Successfully built omero-web 00:00:33 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 00:01:42 00:01:42 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.3.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 00:01:43 + omero config set omero.db.name OMERO-server 00:01:55 + omero config set omero.db.host pg 00:02:02 + omero config set omero.db.user postgres 00:02:09 + omero config set omero.data.dir /home/omero/omero-server-data 00:02:16 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:02:23 + omero config set omero.db.poolsize 25 00:02:31 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:02:38 + omero config set omero.security.trustStorePassword changeit 00:02:44 + omero config set omero.mail.config true 00:02:51 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:02:58 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' 00:03:04 + omero certificates 00:03:09 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 00:03:09 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:03:10 + '[' false = true ']' 00:03:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:03:10 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:03:10 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:03:10 2026-10-04 00:03:10,182 [ omego.db] DEBUG dbcommand => upgrade 00:03:10 2026-10-04 00:03:10,183 [ omego.db] DEBUG dbhost => localhost 00:03:10 2026-10-04 00:03:10,183 [ omego.db] DEBUG dbname => OMERO-server 00:03:10 2026-10-04 00:03:10,183 [ omego.db] DEBUG dbpass => omero 00:03:10 2026-10-04 00:03:10,183 [ omego.db] DEBUG dbuser => omero 00:03:10 2026-10-04 00:03:10,183 [ omego.db] DEBUG rootpass => omero 00:03:10 2026-10-04 00:03:10,183 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:03:10 2026-10-04 00:03:10,184 [omego.extern] INFO Executing : omero version 00:03:14 OMERO.py version: 00:03:15 OMERO.server version: 00:03:15 5.6.3-689-760e8ed105-ice36-b99 00:03:15 5.23.1.dev0 00:03:15 2026-10-04 00:03:15,482 [omego.extern] INFO Completed [5.298 s] 00:03:15 2026-10-04 00:03:15,482 [omego.extern] DEBUG Using omero CLI from omero 00:03:15 2026-10-04 00:03:15,482 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:03:15 2026-10-04 00:03:15,482 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:03:15 2026-10-04 00:03:15,482 [omego.extern] INFO Executing : omero config get --show-password 00:03:20 2026-10-04 00:03:20,954 [omego.extern] INFO Completed [5.472 s] 00:03:20 2026-10-04 00:03:20,955 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:03:20 2026-10-04 00:03:20,955 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:03:21 2026-10-04 00:03:21,127 [omego.extern] INFO Completed [0.172 s] 00:03:21 2026-10-04 00:03:21,127 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 00:03:21 2026-10-04 00:03:21,127 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 00:03:21 00:03:21 2026-10-04 00:03:21,127 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:03:21 2026-10-04 00:03:21,127 [omego.extern] INFO Executing : omero config get --show-password 00:03:26 2026-10-04 00:03:26,555 [omego.extern] INFO Completed [5.428 s] 00:03:26 2026-10-04 00:03:26,555 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:03:26 2026-10-04 00:03:26,556 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:03:26 2026-10-04 00:03:26,598 [omego.extern] INFO Completed [0.043 s] 00:03:26 2026-10-04 00:03:26,598 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.7") at port "5432".\n' 00:03:26 2026-10-04 00:03:26,598 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:03:26 2026-10-04 00:03:26,598 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:03:26 2026-10-04 00:03:26,598 [omego.extern] INFO Executing : omero config get --show-password 00:03:32 2026-10-04 00:03:32,261 [omego.extern] INFO Completed [5.663 s] 00:03:32 2026-10-04 00:03:32,261 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:03:32 2026-10-04 00:03:32,261 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:03:32 2026-10-04 00:03:32,287 [omego.extern] INFO Completed [0.026 s] 00:03:32 2026-10-04 00:03:32,287 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:03:32 2026-10-04 00:03:32,287 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:03:32 2026-10-04 00:03:32,359 [ omego.db] INFO Database is already at OMERO5.4__0 00:03:32 + export LANG=en_US.UTF-8 00:03:32 + LANG=en_US.UTF-8 00:03:32 + export LANGUAGE=en_US:en 00:03:32 + LANGUAGE=en_US:en 00:03:32 + export LC_ALL=en_US.UTF-8 00:03:32 + LC_ALL=en_US.UTF-8 00:03:32 + BUILD_ID=DONT_KILL_ME 00:03:32 + omero admin start 00:03:46 No descriptor given. Using etc/grid/default.xml 00:03:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:03:59 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:03:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:03:59 Waiting on startup. Use CTRL-C to exit 00:04:00 + omero admin waitup 00:04:06 Waiting on startup. Use CTRL-C to exit 00:04:06 + omero admin diagnostics 00:04:13 00:04:13 ================================================================================ 00:04:13 OMERO Diagnostics (admin) 00:04:13 ================================================================================ 00:04:13 00:04:13 Commands: java -version 21.0.12 (/usr/bin/java) 00:04:13 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:04:13 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:04:13 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:04:13 Commands: psql --version 16.14 (/usr/bin/psql) 00:04:13 Commands: openssl version 3.5.527 (/usr/bin/openssl) 00:04:13 00:04:13 Component: OMERO.py 5.23.1.dev0 00:04:13 Component: OMERO.server 5.6.3-689-760e8ed105-ice36-b99 00:04:13 00:04:13 Server: icegridnode running 00:04:13 Server: Blitz-0 active (pid = 40241, enabled) 00:04:13 Server: Indexer-0 active (pid = 40264, enabled) 00:04:13 Server: OMERO.Glacier2 active (pid = 40259, enabled) 00:04:13 Server: OMERO.IceStorm active (pid = 40291, enabled) 00:04:13 Server: Processor-0 active (pid = 40272, enabled) 00:04:13 Server: Tables-0 active (pid = 40288, enabled) 00:04:13 00:04:13 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:04:13 Log files: Blitz-0.log 32.3 KB errors=0 warnings=1 00:04:13 Log files: DropBox.log n/a 00:04:13 Log files: FileServer.log n/a 00:04:13 Log files: Indexer-0.log 2.6 KB 00:04:13 Log files: MonitorServer.log n/a 00:04:13 Log files: Processor-0.log 856 B 00:04:13 Log files: Tables-0.log 1.1 KB 00:04:13 Log files: TestDropBox.log n/a 00:04:13 Log files: master.err empty 00:04:13 Log files: master.out 30.7 KB 00:04:13 Log files: Total size 0.07 MB 00:04:13 00:04:13 00:04:13 Environment:OMERO_HOME=(unset) 00:04:13 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:04:13 Environment:OMERO_NODE=(unset) 00:04:13 Environment:OMERO_MASTER=(unset) 00:04:13 Environment:OMERO_USERDIR=(unset) 00:04:13 Environment:OMERO_TMPDIR=(unset) 00:04:13 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:04:13 Environment:PYTHONPATH=(unset) 00:04:13 Environment:ICE_HOME=/opt/ice-3.6.5 00:04:13 Environment:LD_LIBRARY_PATH=(unset) 00:04:13 Environment:DYLD_LIBRARY_PATH=(unset) 00:04:13 00:04:13 OMERO SSL port:4064 00:04:13 OMERO TCP port:4063 00:04:13 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:04:13 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:04:13 00:04:13 JVM settings: Blitz-${index} -Xmx5007m 00:04:13 JVM settings: Indexer-${index} -Xmx3338m 00:04:13 JVM settings: PixelData-${index} -Xmx5007m 00:04:13 JVM settings: Repository-${index} -Xmx3338m 00:04:13 00:04:13 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:04:13 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:04:13 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:04:13 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 00:04:13 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 00:04:13 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 00:04:13 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 00:04:13 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 00:04:13 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 00:04:13 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 00:04:13 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 00:04:13 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 00:04:13 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 00:04:13 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 00:04:13 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 00:04:13 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 00:04:13 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.2-SNAPSHOT 7969b13fd1de1993137540d0859386eb965e28ba 00:04:14 + deactivate 00:04:14 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:04:14 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:04:14 + export PATH 00:04:14 + unset _OLD_VIRTUAL_PATH 00:04:14 + '[' -n '' ']' 00:04:14 + hash -r 00:04:14 + '[' -n '' ']' 00:04:14 + unset VIRTUAL_ENV 00:04:14 + unset VIRTUAL_ENV_PROMPT 00:04:14 + '[' '!' '' = nondestructive ']' 00:04:14 + unset -f deactivate 00:04:14 Finished: SUCCESS