1OmeroPy.test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin68.871UnboundLocalError: cannot access local variable 'pix_id' where it is not associated with a valueself = <test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin object at 0x7fe9621a86d0> tmpdir = local('/tmp/pytest-of-omero/pytest-0/test_remove__pre_fs_pyramids0') capsys = <_pytest.capture.CaptureFixture object at 0x7fe957a43e10> def test_remove__pre_fs_pyramids(self, tmpdir, capsys): """Test removepyramids for pre-fs data""" > self.import_pyramid_pre_fs(tmpdir) test/integration/clitest/test_pyramids.py:232: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin object at 0x7fe9621a86d0> tmpdir = local('/tmp/pytest-of-omero/pytest-0/test_remove__pre_fs_pyramids0') def import_pyramid_pre_fs(self, tmpdir): name = "test&sizeX=4000&sizeY=4000.fake" fakefile = tmpdir.join(name) fakefile.write('') pixels = self.import_image(filename=str(fakefile), skip="checksum")[0] id = int(float(pixels)) # wait for the pyramid to be generated self.wait_for_pyramid(id) query_service = self.client.sf.getQueryService() pixels_service = self.client.sf.getPixelsService() orig_pix = query_service.findByQuery( "select p from Pixels p where p.id = :id", ParametersI().addId(id)) orig_fs = query_service.findByQuery( "select f from Image i join i.fileset f where i.id = :id", ParametersI().addId(orig_pix.image.id.val)) try: new_img = pixels_service.copyAndResizeImage( orig_pix.image.id.val, rint(4000), rint(4000), rint(1), rint(1), [0], None, True).val pix_id = unwrap(query_service.projection( "select p.id from Image i join i.pixels p where i.id = :id", ParametersI().addId(new_img)))[0][0] # This won't work but it but we then have a pyramid without fileset self.copyPixels(orig_pix, PixelsI(pix_id, False)) except omero.InternalException: print("Cannot copy pixels for image %s" % orig_pix.image.id.val) finally: self.delete([orig_fs]) > return pix_id ^^^^^^ E UnboundLocalError: cannot access local variable 'pix_id' where it is not associated with a value test/integration/clitest/test_pyramids.py:127: UnboundLocalError29test_remove__pre_fs_pyramidsfalseFAILED1OmeroPy.test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin188.357Failed: Timed out waiting for pyramid file 317_pyramidself = <test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin object at 0x7fe9621a8c90> tmpdir = local('/tmp/pytest-of-omero/pytest-0/test_remove_pyramids0') capsys = <_pytest.capture.CaptureFixture object at 0x7fe957b3a350> def test_remove_pyramids(self, tmpdir, capsys): """Test removepyramids with litlle endian true""" name = "big&sizeX=3500&sizeY=3500&little=false.fake" big_id = self.import_pyramid(tmpdir, name=name, skip=None) query_service = self.client.sf.getQueryService() rows = unwrap(query_service.projection( "select p.id from Image i join i.pixels p where i.id = :id", ParametersI().addId(big_id) )) pixels_id = rows[0][0] > self.wait_for_pyramid_file(pixels_id) test/integration/clitest/test_pyramids.py:275: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin object at 0x7fe9621a8c90> pixels_id = 317, timeout = 120 def wait_for_pyramid_file(self, pixels_id, timeout=120): pixels_dir = ( "/home/omero/workspace/" "OMERO-test-integration/data/Pixels" ) expected = f"{pixels_id}_pyramid" deadline = time.time() + timeout while time.time() < deadline: for root, _, files in os.walk(pixels_dir): if expected in files: return time.sleep(1) > pytest.fail( f"Timed out waiting for pyramid file {expected}" ) E Failed: Timed out waiting for pyramid file 317_pyramid test/integration/clitest/test_pyramids.py:156: Failed29test_remove_pyramidsfalseFAILED1OmeroPy.test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin188.629Failed: Timed out waiting for pyramid file 316_pyramidself = <test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin object at 0x7fe9621ab690> tmpdir = local('/tmp/pytest-of-omero/pytest-0/test_remove_pyramids_big_endia0') capsys = <_pytest.capture.CaptureFixture object at 0x7fe957b9d550> def test_remove_pyramids_big_endian(self, tmpdir, capsys): """Test removepyramids with big endian true""" name = "big&sizeX=3500&sizeY=3500&little=false.fake" img_id = self.import_pyramid(tmpdir, name=name, skip=None) query_service = self.client.sf.getQueryService() image = query_service.findByQuery( "select i from Image i join fetch i.pixels p where i.id = :id", ParametersI().addId(img_id) ) pixels_id = next(iter(image.copyPixels())).id.val # Wait for pyramid to actually be on disk > self.wait_for_pyramid_file(pixels_id) test/integration/clitest/test_pyramids.py:254: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin object at 0x7fe9621ab690> pixels_id = 316, timeout = 120 def wait_for_pyramid_file(self, pixels_id, timeout=120): pixels_dir = ( "/home/omero/workspace/" "OMERO-test-integration/data/Pixels" ) expected = f"{pixels_id}_pyramid" deadline = time.time() + timeout while time.time() < deadline: for root, _, files in os.walk(pixels_dir): if expected in files: return time.sleep(1) > pytest.fail( f"Timed out waiting for pyramid file {expected}" ) E Failed: Timed out waiting for pyramid file 316_pyramid test/integration/clitest/test_pyramids.py:156: Failed29test_remove_pyramids_big_endianfalseFAILED1OmeroPy.test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin69.115AssertionError: assert '5eb87159f8ecb29ae94909082c3288d338985bb2' != '5eb87159f8ecb29ae94909082c3288d338985bb2'self = <test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin object at 0x7fe9621a8410> tmpdir = local('/tmp/pytest-of-omero/pytest-0/test_remove_pyramids_check_thu0') capsys = <_pytest.capture.CaptureFixture object at 0x7fe9577cff50> def test_remove_pyramids_check_thumbnails(self, tmpdir, capsys): """Test check that the thumbnail is correctly created""" name = "big&sizeX=3500&sizeY=3500&little=false.fake" img_id = self.import_pyramid(tmpdir, name=name, skip=None) query_service = self.client.sf.getQueryService() pix = query_service.findByQuery( "select p from Pixels p where p.image.id = :id", ParametersI().addId(img_id)) tb = self.client.sf.createThumbnailStore() id = pix.id.val thumb_hash = None try: thumbs = tb.getThumbnailByLongestSideSet(rint(64), [id], {'omero.group': '-1'}) assert len(thumbs) == 1 thumb_hash = self.calculate_sha1(thumbs[id]) # remove the pyramid and the thumbnail self.args += ["--endian=big"] self.cli.invoke(self.args, strict=True) out, err = capsys.readouterr() thumbs = tb.getThumbnailByLongestSideSet(rint(64), [id], {'omero.group': '-1'}) assert len(thumbs) == 1 # The clock should be returned during the pyramid generation digest = self.calculate_sha1(thumbs[id]) > assert digest != thumb_hash E AssertionError: assert '5eb87159f8ecb29ae94909082c3288d338985bb2' != '5eb87159f8ecb29ae94909082c3288d338985bb2' test/integration/clitest/test_pyramids.py:319: AssertionError29test_remove_pyramids_check_thumbnailsfalseFAILED0OmeroPy.test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin67.6440test_remove_pyramids_imported_after_futurefalsePASSED0OmeroPy.test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin68.3050test_remove_pyramids_limitfalsePASSED1OmeroPy.test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin187.507Failed: Timed out waiting for pyramid file 311_pyramidself = <test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin object at 0x7fe9620e0710> tmpdir = local('/tmp/pytest-of-omero/pytest-0/test_remove_pyramids_little_en0') capsys = <_pytest.capture.CaptureFixture object at 0x7fe9577adb10> def test_remove_pyramids_little_endian(self, tmpdir, capsys): """Test removepyramids with little endian true""" img_id = self.import_pyramid(tmpdir) # Find the Pixels ID corresponding to the imported image query_service = self.client.sf.getQueryService() rows = unwrap(query_service.projection( "select p.id from Image i join i.pixels p where i.id = :id", ParametersI().addId(img_id) )) pixels_id = rows[0][0] # Wait until the pyramid actuall exists on disk > self.wait_for_pyramid_file(pixels_id) test/integration/clitest/test_pyramids.py:173: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin object at 0x7fe9620e0710> pixels_id = 311, timeout = 120 def wait_for_pyramid_file(self, pixels_id, timeout=120): pixels_dir = ( "/home/omero/workspace/" "OMERO-test-integration/data/Pixels" ) expected = f"{pixels_id}_pyramid" deadline = time.time() + timeout while time.time() < deadline: for root, _, files in os.walk(pixels_dir): if expected in files: return time.sleep(1) > pytest.fail( f"Timed out waiting for pyramid file {expected}" ) E Failed: Timed out waiting for pyramid file 311_pyramid test/integration/clitest/test_pyramids.py:156: Failed29test_remove_pyramids_little_endianfalseFAILED30OmeroPy.test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin0.00test_remove_pyramids_manualtrueRun locally onlySKIPPED0OmeroPy.test.integration.clitest.test_pyramids.TestRemovePyramidsFullAdmin68.2540test_remove_pyramids_not_valid_limitfalsePASSED5TestRemovePyramidsFullAdmin31