02:31:11 Started by upstream project "Trigger" build number 54 02:31:11 originally caused by: 02:31:11 Started by timer 02:31:11 Running as SYSTEM 02:31:11 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-test-integration 02:31:11 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins9199967178300547248.sh 02:31:11 + source /home/settings.env 02:31:11 ++ OMERO_DB_HOST=pg 02:31:11 ++ OMERO_DB_USER=postgres 02:31:11 ++ OMERO_DB_PASS= 02:31:11 ++ OMERO_ROOT_PASS=omero 02:31:11 ++ OMERO_DATA_DIR=/OMERO 02:31:11 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 02:31:11 + OMERO_DB_NAME=OMERO-test-integration 02:31:11 + SRC=/home/omero/workspace/OMERO-test-integration/src 02:31:11 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist 02:31:11 + OMERO_ENV=/home/omero/workspace/OMERO-test-integration/.venv3 02:31:11 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist 02:31:11 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist 02:31:11 + '[' -e /home/omero/workspace/OMERO-test-integration/.venv3 ']' 02:31:11 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate 02:31:11 ++ deactivate nondestructive 02:31:11 ++ '[' -n '' ']' 02:31:11 ++ '[' -n '' ']' 02:31:11 ++ hash -r 02:31:11 ++ '[' -n '' ']' 02:31:11 ++ unset VIRTUAL_ENV 02:31:11 ++ unset VIRTUAL_ENV_PROMPT 02:31:11 ++ '[' '!' nondestructive = nondestructive ']' 02:31:11 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3 02:31:11 ++ export VIRTUAL_ENV 02:31:11 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:31:11 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:31:11 ++ export PATH 02:31:11 ++ '[' -n '' ']' 02:31:11 ++ '[' -z '' ']' 02:31:11 ++ _OLD_VIRTUAL_PS1= 02:31:11 ++ PS1='(.venv3) ' 02:31:11 ++ export PS1 02:31:11 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 02:31:11 ++ export VIRTUAL_ENV_PROMPT 02:31:11 ++ hash -r 02:31:11 + omero admin stop 02:31:15 Waiting on shutdown. Use CTRL-C to exit 02:31:15 .+ deactivate 02:31:25 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 02:31:25 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:31:25 + export PATH 02:31:25 + unset _OLD_VIRTUAL_PATH 02:31:25 + '[' -n '' ']' 02:31:25 + hash -r 02:31:25 + '[' -n '' ']' 02:31:25 + unset VIRTUAL_ENV 02:31:25 + unset VIRTUAL_ENV_PROMPT 02:31:25 + '[' '!' '' = nondestructive ']' 02:31:25 + unset -f deactivate 02:31:25 + sleep 5 02:31:30 + dropdb -f -h pg -U postgres OMERO-test-integration 02:31:37 + rm -rf /home/omero/workspace/OMERO-test-integration/config /home/omero/workspace/OMERO-test-integration/data /home/omero/workspace/OMERO-test-integration/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-test-integration/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/src /home/omero/workspace/OMERO-test-integration/version.properties 02:32:55 + python3.11 -m venv /home/omero/workspace/OMERO-test-integration/.venv3 02:32:59 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate 02:32:59 ++ deactivate nondestructive 02:32:59 ++ '[' -n '' ']' 02:32:59 ++ '[' -n '' ']' 02:32:59 ++ hash -r 02:32:59 ++ '[' -n '' ']' 02:32:59 ++ unset VIRTUAL_ENV 02:32:59 ++ unset VIRTUAL_ENV_PROMPT 02:32:59 ++ '[' '!' nondestructive = nondestructive ']' 02:32:59 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3 02:32:59 ++ export VIRTUAL_ENV 02:32:59 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:32:59 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:32:59 ++ export PATH 02:32:59 ++ '[' -n '' ']' 02:32:59 ++ '[' -z '' ']' 02:32:59 ++ _OLD_VIRTUAL_PS1='(.venv3) ' 02:32:59 ++ PS1='(.venv3) (.venv3) ' 02:32:59 ++ export PS1 02:32:59 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 02:32:59 ++ export VIRTUAL_ENV_PROMPT 02:32:59 ++ hash -r 02:32:59 + pip install -U pip setuptools 02:33:04 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (26.2.1) 02:33:04 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (84.0.0) 02:33:05 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 02:33:06 Collecting zeroc-ice==3.6.5 02:33:06 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 02:33:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.5 MB/s 0:00:02 02:33:09 + pip install markdown 02:33:10 Requirement already satisfied: markdown in ./.venv3/lib64/python3.11/site-packages (3.10.2) 02:33:10 + pip install mox3 pytest pytest-django pytest-xdist pytest-mock 02:33:11 Requirement already satisfied: mox3 in ./.venv3/lib64/python3.11/site-packages (1.1.0) 02:33:11 Requirement already satisfied: pytest in ./.venv3/lib64/python3.11/site-packages (9.1.1) 02:33:11 Requirement already satisfied: pytest-django in ./.venv3/lib64/python3.11/site-packages (4.12.0) 02:33:11 Requirement already satisfied: pytest-xdist in ./.venv3/lib64/python3.11/site-packages (3.8.0) 02:33:11 Requirement already satisfied: pytest-mock in ./.venv3/lib64/python3.11/site-packages (3.15.1) 02:33:11 Requirement already satisfied: pbr!=2.1.0,>=2.0.0 in ./.venv3/lib64/python3.11/site-packages (from mox3) (7.0.3) 02:33:11 Requirement already satisfied: fixtures>=3.0.0 in ./.venv3/lib64/python3.11/site-packages (from mox3) (4.3.2) 02:33:11 Requirement already satisfied: iniconfig>=1.0.1 in ./.venv3/lib64/python3.11/site-packages (from pytest) (2.3.0) 02:33:11 Requirement already satisfied: packaging>=22 in ./.venv3/lib64/python3.11/site-packages (from pytest) (26.2) 02:33:11 Requirement already satisfied: pluggy<2,>=1.5 in ./.venv3/lib64/python3.11/site-packages (from pytest) (1.6.0) 02:33:11 Requirement already satisfied: pygments>=2.7.2 in ./.venv3/lib64/python3.11/site-packages (from pytest) (2.20.0) 02:33:11 Requirement already satisfied: execnet>=2.1 in ./.venv3/lib64/python3.11/site-packages (from pytest-xdist) (2.1.2) 02:33:11 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (84.0.0) 02:33:12 + pip install tables 02:33:13 Requirement already satisfied: tables in ./.venv3/lib64/python3.11/site-packages (3.11.1) 02:33:13 Requirement already satisfied: numpy>=1.20.0 in ./.venv3/lib64/python3.11/site-packages (from tables) (2.4.6) 02:33:13 Requirement already satisfied: numexpr>=2.6.2 in ./.venv3/lib64/python3.11/site-packages (from tables) (2.14.1) 02:33:13 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (26.2) 02:33:13 Requirement already satisfied: py-cpuinfo in ./.venv3/lib64/python3.11/site-packages (from tables) (9.0.0) 02:33:13 Requirement already satisfied: blosc2>=2.3.0 in ./.venv3/lib64/python3.11/site-packages (from tables) (4.7.0) 02:33:13 Requirement already satisfied: ndindex in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (1.10.1) 02:33:13 Requirement already satisfied: msgpack in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (1.2.1) 02:33:13 Requirement already satisfied: pydantic in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (2.13.4) 02:33:13 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (2.34.2) 02:33:13 Requirement already satisfied: rich in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (15.0.0) 02:33:13 Requirement already satisfied: threadpoolctl in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (3.6.0) 02:33:13 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic->blosc2>=2.3.0->tables) (0.7.0) 02:33:13 Requirement already satisfied: pydantic-core==2.46.4 in ./.venv3/lib64/python3.11/site-packages (from pydantic->blosc2>=2.3.0->tables) (2.46.4) 02:33:13 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic->blosc2>=2.3.0->tables) (4.16.0) 02:33:13 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic->blosc2>=2.3.0->tables) (0.4.2) 02:33:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.9) 02:33:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.18) 02:33:13 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (2.7.0) 02:33:13 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (2026.6.17) 02:33:13 Requirement already satisfied: markdown-it-py>=2.2.0 in ./.venv3/lib64/python3.11/site-packages (from rich->blosc2>=2.3.0->tables) (4.2.0) 02:33:13 Requirement already satisfied: pygments<3.0.0,>=2.13.0 in ./.venv3/lib64/python3.11/site-packages (from rich->blosc2>=2.3.0->tables) (2.20.0) 02:33:13 Requirement already satisfied: mdurl~=0.1 in ./.venv3/lib64/python3.11/site-packages (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) (0.1.2) 02:33:13 + pip install jinja2 02:33:14 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (3.1.6) 02:33:14 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2) (3.0.3) 02:33:14 + pip install PyYAML 02:33:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (6.0.3) 02:33:16 Copied 1 artifact from "OMERO-build" build number 46 02:33:16 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 39 02:33:16 Copied 2 artifacts from "OMERO-build-build" build number 51 02:33:16 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins14091868377061864126.sh 02:33:16 + source /home/settings.env 02:33:16 ++ OMERO_DB_HOST=pg 02:33:16 ++ OMERO_DB_USER=postgres 02:33:16 ++ OMERO_DB_PASS= 02:33:16 ++ OMERO_ROOT_PASS=omero 02:33:16 ++ OMERO_DATA_DIR=/OMERO 02:33:16 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 02:33:16 + export ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip 02:33:16 + ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip 02:33:16 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties 02:33:16 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties 02:33:16 + OMERO_DB_NAME=OMERO-test-integration 02:33:16 + OMERO_DATA_DIR=/home/omero/workspace/OMERO-test-integration/data 02:33:16 + mkdir -p /home/omero/workspace/OMERO-test-integration/data 02:33:16 + SRC=/home/omero/workspace/OMERO-test-integration/src 02:33:16 ++ ls openmicroscopy-5.6.3-643-8780fae9db-ice36-b46.zip 02:33:16 + ZIP_SRC=openmicroscopy-5.6.3-643-8780fae9db-ice36-b46.zip 02:33:16 + unzip openmicroscopy-5.6.3-643-8780fae9db-ice36-b46.zip 02:33:16 Archive: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46.zip 02:33:16 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/ 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.classpath-template 02:33:16 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.github/ 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.github/Pull_Request_Template.md 02:33:16 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.github/workflows/ 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.github/workflows/docker_build.yml 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.github/workflows/release.yml 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.github/workflows/source_build.yml 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.github/workflows/update.yaml 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.mailmap 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/.project 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/CMakeLists.txt 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/CONTRIBUTING.md 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/Dockerfile 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/LICENSE.txt 02:33:16 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/README.md 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/SUPPORT.md 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/build.bat 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/build.py 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/build.xml 02:33:17 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/ 02:33:17 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/ 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/.classpath 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/.project 02:33:17 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/resources/ 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/resources/excludebugs.xml 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/resources/global.xml 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/resources/hibernate.xml 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/resources/lifecycle.xml 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/resources/version.xml 02:33:17 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/scripts/ 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/scripts/parse_version 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/scripts/source-archive.py 02:33:17 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/tests/ 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/tests/build.xml 02:33:17 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/tests/ui/ 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/tests/ui/README.md 02:33:17 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/tests/ui/build.xml 02:33:17 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/tests/ui/plugins/ 02:33:17 inflating: 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openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4DEV__3/ 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 02:33:29 creating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/ 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/psql-footer.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/psql-header.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/schema.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/sql/psql/OMERO5.4__0/views.sql 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/test.xml 02:33:29 inflating: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/update_dependencies.sh 02:33:29 extracting: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/antlib/resources/gitversion.xml 02:33:29 extracting: openmicroscopy-5.6.3-643-8780fae9db-ice36-b46/components/tools/OmeroCpp/cmake/GitVersion.cmake 02:33:29 + rm -f openmicroscopy-5.6.3-643-8780fae9db-ice36-b46.zip 02:33:29 + mv /home/omero/workspace/OMERO-test-integration/openmicroscopy-5.6.3-643-8780fae9db-ice36-b46 /home/omero/workspace/OMERO-test-integration/src 02:33:30 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate 02:33:30 ++ deactivate nondestructive 02:33:30 ++ '[' -n '' ']' 02:33:30 ++ '[' -n '' ']' 02:33:30 ++ hash -r 02:33:30 ++ '[' -n '' ']' 02:33:30 ++ unset VIRTUAL_ENV 02:33:30 ++ unset VIRTUAL_ENV_PROMPT 02:33:30 ++ '[' '!' nondestructive = nondestructive ']' 02:33:30 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3 02:33:30 ++ export VIRTUAL_ENV 02:33:30 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:33:30 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:33:30 ++ export PATH 02:33:30 ++ '[' -n '' ']' 02:33:30 ++ '[' -z '' ']' 02:33:30 ++ _OLD_VIRTUAL_PS1= 02:33:30 ++ PS1='(.venv3) ' 02:33:30 ++ export PS1 02:33:30 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 02:33:30 ++ export VIRTUAL_ENV_PROMPT 02:33:30 ++ hash -r 02:33:30 + for x in *.tar.gz 02:33:30 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 02:33:30 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 02:33:30 Installing build dependencies: started 02:33:32 Installing build dependencies: finished with status 'done' 02:33:32 Getting requirements to build wheel: started 02:33:32 Getting requirements to build wheel: finished with status 'done' 02:33:32 Preparing metadata (pyproject.toml): started 02:33:32 Preparing metadata (pyproject.toml): finished with status 'done' 02:33:32 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.1.dev0) 02:33:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 02:33:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 02:33:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 02:33:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 02:33:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 02:33:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 02:33:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 02:33:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 02:33:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9) 02:33:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18) 02:33:32 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 02:33:32 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17) 02:33:32 Building wheels for collected packages: omero-dropbox 02:33:32 Building wheel for omero-dropbox (pyproject.toml): started 02:33:33 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 02:33:33 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=f72ef4aab9b5c802b1108e425050d12a2156faade95bb7957116101af2d3ff88 02:33:33 Stored in directory: /home/omero/.cache/pip/wheels/fc/7e/62/5e5d34b5de7cc5d8ff95a6620b111f491c603301cfe622e998 02:33:33 Successfully built omero-dropbox 02:33:33 Installing collected packages: omero-dropbox 02:33:33 Attempting uninstall: omero-dropbox 02:33:33 Found existing installation: omero-dropbox 5.7.1.dev0 02:33:33 Uninstalling omero-dropbox-5.7.1.dev0: 02:33:51 Successfully uninstalled omero-dropbox-5.7.1.dev0 02:33:52 Successfully installed omero-dropbox-5.7.1.dev0 02:33:52 + for x in *.tar.gz 02:33:52 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 02:33:53 Processing ./omero_marshal-0.9.2.dev0.tar.gz 02:33:53 Installing build dependencies: started 02:33:55 Installing build dependencies: finished with status 'done' 02:33:55 Getting requirements to build wheel: started 02:33:55 Getting requirements to build wheel: finished with status 'done' 02:33:55 Preparing metadata (pyproject.toml): started 02:33:55 Preparing metadata (pyproject.toml): finished with status 'done' 02:33:55 Building wheels for collected packages: omero_marshal 02:33:55 Building wheel for omero_marshal (pyproject.toml): started 02:33:56 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 02:33:56 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=454a8f85d514ac7cf2c4071fdc3960b78445c41b9c571e890a5b1f273dae23e2 02:33:56 Stored in directory: /home/omero/.cache/pip/wheels/19/bc/99/c23dd653c71b3f05e4c008a12495c8f3b095cce849431c54e1 02:33:56 Successfully built omero_marshal 02:33:56 Installing collected packages: omero_marshal 02:33:56 Attempting uninstall: omero_marshal 02:33:56 Found existing installation: omero_marshal 0.9.2.dev0 02:33:57 Uninstalling omero_marshal-0.9.2.dev0: 02:33:57 Successfully uninstalled omero_marshal-0.9.2.dev0 02:33:59 Successfully installed omero_marshal-0.9.2.dev0 02:34:00 + for x in *.tar.gz 02:34:00 + pip install -U omero_py-5.23.1.dev0.tar.gz 02:34:00 Processing ./omero_py-5.23.1.dev0.tar.gz 02:34:01 Installing build dependencies: started 02:34:02 Installing build dependencies: finished with status 'done' 02:34:02 Getting requirements to build wheel: started 02:34:03 Getting requirements to build wheel: finished with status 'done' 02:34:03 Preparing metadata (pyproject.toml): started 02:34:03 Preparing metadata (pyproject.toml): finished with status 'done' 02:34:03 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 02:34:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 02:34:03 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 02:34:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 02:34:03 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 02:34:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 02:34:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 02:34:03 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.2.0) 02:34:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.4.9) 02:34:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.18) 02:34:03 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0) 02:34:03 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.6.17) 02:34:03 Building wheels for collected packages: omero-py 02:34:03 Building wheel for omero-py (pyproject.toml): started 02:34:04 Building wheel for omero-py (pyproject.toml): finished with status 'done' 02:34:04 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786708 sha256=fe4cdd3f7f604ecaae4543c179bf01dfc76a071995bd7a38161de3725e6e14df 02:34:04 Stored in directory: /home/omero/.cache/pip/wheels/f0/67/d7/966241aae598ef6c609c945b3d6bb828e11ceaf0fb2f56963b 02:34:04 Successfully built omero-py 02:34:05 Installing collected packages: omero-py 02:34:05 Attempting uninstall: omero-py 02:34:05 Found existing installation: omero-py 5.23.1.dev0 02:34:06 Uninstalling omero-py-5.23.1.dev0: 02:34:16 Successfully uninstalled omero-py-5.23.1.dev0 02:34:33 Successfully installed omero-py-5.23.1.dev0 02:34:33 + for x in *.tar.gz 02:34:33 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 02:34:35 Processing ./omero_scripts-5.10.1.dev0.tar.gz 02:34:35 Installing build dependencies: started 02:34:36 Installing build dependencies: finished with status 'done' 02:34:36 Getting requirements to build wheel: started 02:34:37 Getting requirements to build wheel: finished with status 'done' 02:34:37 Preparing metadata (pyproject.toml): started 02:34:37 Preparing metadata (pyproject.toml): finished with status 'done' 02:34:37 Building wheels for collected packages: omero-scripts 02:34:37 Building wheel for omero-scripts (pyproject.toml): started 02:34:37 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 02:34:37 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=6f08805ee2e89347f5de77700a5813c2d42f567faca9f4a3e4b320c8cb9a4bfb 02:34:37 Stored in directory: /home/omero/.cache/pip/wheels/dc/2a/1b/114f0904de09a5b967180bea9e80ac22e3d829eefd3cfd8487 02:34:37 Successfully built omero-scripts 02:34:37 Installing collected packages: omero-scripts 02:34:37 Attempting uninstall: omero-scripts 02:34:37 Found existing installation: omero-scripts 5.10.1.dev0 02:34:38 Uninstalling omero-scripts-5.10.1.dev0: 02:34:38 Successfully uninstalled omero-scripts-5.10.1.dev0 02:34:39 Successfully installed omero-scripts-5.10.1.dev0 02:34:39 + for x in *.tar.gz 02:34:39 + pip install -U omero_web-5.32.1.dev0.tar.gz 02:34:40 Processing ./omero_web-5.32.1.dev0.tar.gz 02:34:40 Installing build dependencies: started 02:34:42 Installing build dependencies: finished with status 'done' 02:34:42 Getting requirements to build wheel: started 02:34:43 Getting requirements to build wheel: finished with status 'done' 02:34:43 Preparing metadata (pyproject.toml): started 02:34:43 Preparing metadata (pyproject.toml): finished with status 'done' 02:34:43 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0) 02:34:43 Requirement already satisfied: concurrent-log-handler>=0.9.20 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.29) 02:34:43 Requirement already satisfied: Django<5.3,>=5.2.9 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.2.16) 02:34:43 Requirement already satisfied: django-pipeline>=4.1.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.1.0) 02:34:43 Requirement already satisfied: django-cors-headers==3.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.7.0) 02:34:43 Requirement already satisfied: whitenoise>=5.3.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (6.12.0) 02:34:43 Requirement already satisfied: gunicorn>=19.3 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.0.0) 02:34:43 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0) 02:34:43 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0) 02:34:43 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (2026.2) 02:34:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0) 02:34:43 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2) 02:34:43 Requirement already satisfied: importlib-resources in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (7.1.0) 02:34:43 Requirement already satisfied: asgiref>=3.8.1 in ./.venv3/lib64/python3.11/site-packages (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) (3.11.1) 02:34:43 Requirement already satisfied: sqlparse>=0.3.1 in ./.venv3/lib64/python3.11/site-packages (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) (0.5.5) 02:34:43 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (84.0.0) 02:34:43 Requirement already satisfied: wheel in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (0.47.0) 02:34:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4) 02:34:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0) 02:34:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6) 02:34:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3) 02:34:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5) 02:34:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2) 02:34:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9) 02:34:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18) 02:34:43 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0) 02:34:43 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17) 02:34:43 Building wheels for collected packages: omero-web 02:34:43 Building wheel for omero-web (pyproject.toml): started 02:34:44 Building wheel for omero-web (pyproject.toml): finished with status 'done' 02:34:44 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820231 sha256=38ed522eca889f4342786510e3398a482acbd75f3a64fc2da18409975b7c01a4 02:34:44 Stored in directory: /home/omero/.cache/pip/wheels/f1/25/17/2aeeabb109d24bc4d86780951b7f1f7cca797777b03207d63c 02:34:44 Successfully built omero-web 02:34:45 Installing collected packages: omero-web 02:34:45 Attempting uninstall: omero-web 02:34:45 Found existing installation: omero-web 5.32.1.dev0 02:34:47 Uninstalling omero-web-5.32.1.dev0: 02:34:47 Successfully uninstalled omero-web-5.32.1.dev0 02:34:57 Successfully installed omero-web-5.32.1.dev0 02:34:57 + pip install omero-certificates 02:34:58 Requirement already satisfied: omero-certificates in ./.venv3/lib64/python3.11/site-packages (0.4.0) 02:34:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.1.dev0) 02:34:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 02:34:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 02:34:58 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 02:34:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 02:34:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 02:34:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 02:34:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 02:34:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 02:34:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9) 02:34:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18) 02:34:58 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 02:34:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.6.17) 02:34:59 + for x in omero-cli-duplicate 02:34:59 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 02:35:00 Collecting omero-cli-duplicate 02:35:00 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-6cdp79_j/omero-cli-duplicate_f65a052add19482b8837674c0402e0a1 02:35:00 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-6cdp79_j/omero-cli-duplicate_f65a052add19482b8837674c0402e0a1 02:35:01 Running command git checkout -b merge_ci --track origin/merge_ci 02:35:01 Switched to a new branch 'merge_ci' 02:35:01 branch 'merge_ci' set up to track 'origin/merge_ci'. 02:35:01 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit afb9b7b406495100bb01e0e8f5763889db42c9d9 02:35:01 Installing build dependencies: started 02:35:03 Installing build dependencies: finished with status 'done' 02:35:03 Getting requirements to build wheel: started 02:35:03 Getting requirements to build wheel: finished with status 'done' 02:35:03 Preparing metadata (pyproject.toml): started 02:35:04 Preparing metadata (pyproject.toml): finished with status 'done' 02:35:04 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.1.dev0) 02:35:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 02:35:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 02:35:04 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 02:35:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 02:35:04 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 02:35:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 02:35:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 02:35:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 02:35:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9) 02:35:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18) 02:35:04 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 02:35:04 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.6.17) 02:35:04 + source /home/omero/workspace/OMERO-test-integration/src/docs/hudson/functions.sh 02:35:04 + /home/omero/workspace/OMERO-test-integration/src/build.py build-default test-compile 02:35:04 Buildfile: /home/omero/workspace/OMERO-test-integration/src/build.xml 02:35:05 02:35:05 check-ivy: 02:35:05 Creating /home/omero/workspace/OMERO-test-integration/src/etc/local.properties 02:35:05 Created dir: /home/omero/workspace/OMERO-test-integration/src/target 02:35:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 02:35:05 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml 02:35:06 02:35:06 build-scons: 02:35:06 Expanding: /home/omero/workspace/OMERO-test-integration/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-test-integration/src/target/scons 02:35:08 02:35:08 build: 02:35:08 No sub-builds to iterate on 02:35:08 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb... 02:35:08 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb... 02:35:08 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS... 02:35:08 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava... 02:35:08 02:35:08 tools-init: 02:35:08 no-op 02:35:08 02:35:08 retrieve: 02:35:08 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 02:35:08 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml 02:35:51 02:35:51 prepare: 02:35:51 Preparing: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs 02:35:51 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/.done 02:35:51 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/src 02:35:51 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources 02:35:51 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes 02:35:51 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes 02:35:51 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/reports 02:35:51 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources 02:35:51 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes 02:35:51 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources 02:35:51 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes 02:35:51 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources 02:35:51 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes 02:35:52 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources 02:35:52 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes 02:35:52 02:35:52 pre-compile: 02:35:52 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes 02:35:53 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes 02:36:02 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes 02:36:07 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes 02:36:08 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes 02:36:10 02:36:10 compile: 02:36:10 no-op 02:36:10 02:36:10 package: 02:36:10 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/omero_client.jar 02:36:15 02:36:15 install: 02:36:15 :: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-643-8780fae9db-ice36-b46-ice36 :: integration :: Thu Aug 13 02:35:08 UTC 2026 02:36:15 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/ivy.xml 02:36:15 :: publishing :: omero#omero_client 02:36:15 published omero_client to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-643-8780fae9db-ice36-b46-ice36/omero_client-5.6.3-643-8780fae9db-ice36-b46-ice36.jar 02:36:15 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-643-8780fae9db-ice36-b46-ice36/omero_client-5.6.3-643-8780fae9db-ice36-b46-ice36.xml 02:36:15 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy... 02:36:15 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy... 02:36:15 02:36:15 retrieve: 02:36:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 02:36:15 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml 02:36:16 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools... 02:36:16 02:36:16 dist: 02:36:16 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/service-classes/META-INF 02:36:16 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/server 02:36:16 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts 02:36:16 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts 02:36:16 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/scripts 02:36:17 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/dist 02:36:17 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-test-integration/src/dist 02:36:17 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests... 02:36:17 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui... 02:36:17 02:36:17 copy-licenses: 02:36:17 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist 02:36:17 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/share 02:36:17 Copying 44 files to /home/omero/workspace/OMERO-test-integration/src/dist/share 02:36:18 02:36:18 copy-history: 02:36:18 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist 02:36:18 02:36:18 copy-etc: 02:36:18 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist/etc 02:36:18 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc/templates 02:36:18 02:36:18 copy-sql: 02:36:18 Copying 60 files to /home/omero/workspace/OMERO-test-integration/src/dist 02:36:31 02:36:31 copy-server: 02:36:31 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 02:36:36 02:36:36 copy-client: 02:36:36 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/client 02:36:40 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 02:36:45 02:36:45 update-version: 02:36:45 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc 02:36:45 02:36:45 create-workdirs: 02:36:45 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/etc/grid 02:36:46 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var 02:36:46 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var/tmp 02:36:46 02:36:46 copy-luts: 02:36:46 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts 02:36:46 Copying 47 files to /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts 02:36:46 02:36:46 test-compile: 02:36:46 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml 02:36:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS... 02:36:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy... 02:36:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy... 02:36:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb... 02:36:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb... 02:36:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui... 02:36:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava... 02:36:47 02:36:47 testng-init: 02:36:47 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 02:36:47 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml 02:36:57 02:36:57,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 02:36:57 02:36:57,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ab7a4eb - No custom configurators were discovered as a service. 02:36:57 02:36:57,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ab7a4eb - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 02:36:57 02:36:57,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ab7a4eb - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 02:36:57 02:36:57,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 02:36:57 02:36:57,419 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 02:36:57 02:36:57,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ab7a4eb - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 02:36:57 02:36:57,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ab7a4eb - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 02:36:57 02:36:57,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ab7a4eb - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 02:36:57 02:36:57,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 02:36:57 02:36:57,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml] 02:36:57 02:36:57,429 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7ec00f98 - Resource [logback.xml] occurs multiple times on the classpath. 02:36:57 02:36:57,429 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7ec00f98 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml] 02:36:57 02:36:57,429 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7ec00f98 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 02:36:57 02:36:57,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 02:36:57 02:36:57,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 02:36:57 02:36:57,685 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 02:36:57 02:36:57,687 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@67b68dc3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 02:36:57 02:36:57,687 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@67b68dc3 - Please move "immediateFlush" property into the enclosing appender. 02:36:57 02:36:57,768 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@67b68dc3 - Setting the "immediateFlush" property of the enclosing appender to true 02:36:57 02:36:57,769 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 02:36:57 02:36:57,769 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 02:36:57 02:36:57,769 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 02:36:57 02:36:57,769 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 02:36:57 02:36:57,769 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 02:36:57 02:36:57,769 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 02:36:57 02:36:57,770 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5922338f - End of configuration. 02:36:57 02:36:57,773 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1e7544bc - Registering current configuration as safe fallback point 02:36:57 02:36:57,773 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ab7a4eb - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 351 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 02:36:57 02:36:57 lifecycle.test-compile: 02:36:57 Copying 3 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes 02:36:57 Compiling 85 source files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes 02:36:58 warning: [options] bootstrap class path not set in conjunction with -source 8 02:36:58 warning: [options] source value 8 is obsolete and will be removed in a future release 02:36:58 warning: [options] target value 8 is obsolete and will be removed in a future release 02:36:58 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 02:37:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 02:37:00 import omero.grid.RawAccessRequest; 02:37:00 ^ 02:37:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 02:37:01 import omero.grid.RawAccessRequest; 02:37:01 ^ 02:37:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 02:37:01 import omero.grid.RawAccessRequest; 02:37:01 ^ 02:37:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 02:37:01 import omero.model.ImportJob; 02:37:01 ^ 02:37:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 02:37:01 import omero.model.ImportJobI; 02:37:01 ^ 02:37:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 02:37:02 IObject link = (IObject) linkClass.newInstance(); 02:37:02 ^ 02:37:02 where T is a type-variable: 02:37:02 T extends Object declared in class Class 02:37:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 02:37:02 T copy = (T) obj.getClass().newInstance(); 02:37:02 ^ 02:37:02 where T is a type-variable: 02:37:02 T extends Object declared in class Class 02:37:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 02:37:02 RawAccessRequest raw = new RawAccessRequest(); 02:37:02 ^ 02:37:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 02:37:02 RawAccessRequest raw = new RawAccessRequest(); 02:37:02 ^ 02:37:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 02:37:02 raw.repoUuid = legacy.root().getHash().getValue(); 02:37:02 ^ 02:37:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 02:37:02 raw.command = "rm"; 02:37:02 ^ 02:37:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 02:37:02 raw.args = Arrays.asList(path); 02:37:02 ^ 02:37:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 02:37:02 final IObject link = linkClass.newInstance(); 02:37:02 ^ 02:37:02 where T is a type-variable: 02:37:02 T extends Object declared in class Class 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 02:37:03 originalLink.setChild(annotationClass.newInstance()); 02:37:03 ^ 02:37:03 where T is a type-variable: 02:37:03 T extends Object declared in class Class 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 02:37:03 RoiResult r = svc.findByImage(id, new RoiOptions()); 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 02:37:03 final RawAccessRequest request = new RawAccessRequest(); 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 02:37:03 final RawAccessRequest request = new RawAccessRequest(); 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 02:37:03 request.repoUuid = repo.root().getHash().getValue(); 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 02:37:03 request.command = "exists"; 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 02:37:03 request.args = Collections.singletonList(dirPath); 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 02:37:03 final RawAccessRequest request = new RawAccessRequest(); 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 02:37:03 final RawAccessRequest request = new RawAccessRequest(); 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 02:37:03 request.repoUuid = repo.root().getHash().getValue(); 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 02:37:03 request.command = "exists"; 02:37:03 ^ 02:37:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 02:37:03 request.args = Collections.singletonList(dirName); 02:37:03 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 02:37:04 final ImportJob importJob = new ImportJobI(); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 02:37:04 final ImportJob importJob = new ImportJobI(); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 02:37:04 importJob.setImageName(omero.rtypes.rstring(name)); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 02:37:04 importJob.setImageDescription(omero.rtypes.rstring(desc)); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 02:37:04 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 02:37:04 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 02:37:04 final String savedName = sent.getImageName().getValue().toString(); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 02:37:04 final String savedDesc = sent.getImageDescription().getValue().toString(); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 02:37:04 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 02:37:04 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 02:37:04 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 02:37:04 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 02:37:04 RoiResult r = svc.findByImage(image.getId().getValue(), 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 02:37:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 02:37:04 l = svc.getRoiMeasurements(image.getId().getValue(), options); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 02:37:04 l = svc.getRoiMeasurements(image.getId().getValue(), options); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 02:37:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 02:37:04 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 02:37:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 02:37:04 table = svc.getTable(f.getId().getValue()); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 02:37:04 RoiResult r = svc.findByImage(image.getId().getValue(), 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 02:37:04 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 02:37:04 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 02:37:04 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 02:37:04 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 02:37:04 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 02:37:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 02:37:04 svc.getShapeStatsRestricted( 02:37:04 ^ 02:37:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 02:37:04 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 02:37:04 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 02:37:05 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 02:37:05 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 02:37:05 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 02:37:05 request.typesToIgnore = Collections.singletonList("Annotation"); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 02:37:05 request.typesToIgnore = Collections.singletonList("Annotation"); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 02:37:05 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 02:37:05 p2.setRelatedTo(p1); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 02:37:05 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 02:37:05 pixels1.setRelatedTo(pixels2); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 02:37:05 Pixels pixels = pixels1.getRelatedTo(); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 02:37:05 Assert.assertNull(pixels1.getRelatedTo()); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 02:37:05 pixels1.setRelatedTo(pixels2); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 02:37:05 Pixels pixels = pixels1.getRelatedTo(); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 02:37:05 Assert.assertNull(pixels1.getRelatedTo()); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 02:37:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 02:37:05 l = svc.getRoiMeasurements(image.getId().getValue(), options); 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 02:37:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 02:37:05 ^ 02:37:05 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 02:37:05 l = svc.getRoiMeasurements(image.getId().getValue(), options); 02:37:05 ^ 02:37:05 Note: Some input files use unchecked or unsafe operations. 02:37:05 Note: Recompile with -Xlint:unchecked for details. 02:37:05 91 warnings 02:37:06 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_681825836.tmp 02:37:06 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.jar 02:37:06 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml 02:37:06 :: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-643-8780fae9db-ice36-b46-ice36 :: integration :: Thu Aug 13 02:36:46 UTC 2026 02:37:06 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml 02:37:06 :: publishing :: omero#OmeroJava-test 02:37:06 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-643-8780fae9db-ice36-b46-ice36.jar 02:37:06 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-643-8780fae9db-ice36-b46-ice36.xml 02:37:06 02:37:06 BUILD SUCCESSFUL 02:37:06 Total time: 2 minutes 2 seconds 02:37:06 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist 02:37:06 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist 02:37:06 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist 02:37:06 + omero config set omero.db.name OMERO-test-integration 02:37:10 + omero config set omero.db.host pg 02:37:12 + omero config set omero.db.user postgres 02:37:15 + omero config set omero.db.poolsize 50 02:37:18 + omero config set omero.jvmcfg.max_system_memory.blitz 64000 02:37:20 + omero config set omero.data.dir /home/omero/workspace/OMERO-test-integration/data 02:37:23 + omero config set omero.ports.prefix 1 02:37:26 + omero config set omero.web.server_list '[["testintegration",14064,"testintegration"]]'