1OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject2.003AttributeError: module 'omero.model' has no attribute 'NoneAnnotationLinkI'self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f4747e5f850> def testAnnotationAnnotationLinks(self): """ Test various annotations methods when parent is an Annotation or Group """ group = self.new_group(perms='rwra--') client, user = self.new_client_and_user(group=group) conn = BlitzGateway(client_obj=client) parent = omero.gateway.TagAnnotationWrapper(conn) parent.setNs("test.annotation.parent") parent.setValue("parent Tag") parent.save() COMMENT_TEXT = "test annotation child Comment" child = omero.gateway.CommentAnnotationWrapper(conn) child.setNs("test.annotation.child") child.setValue(COMMENT_TEXT) child.save() child2 = omero.gateway.LongAnnotationWrapper(conn) child2.setNs("test.annotation.child") child2.setValue(123) child2.save() # link child to parent > parent.linkAnnotation(child) test/integration/gatewaytest/test_get_objects.py:817: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1133: in linkAnnotation ann = self._linkAnnotation(ann) ^^^^^^^^^^^^^^^^^^^^^^^^^ ../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1065: in _linkAnnotation return self._linkObject(ann, "%sAnnotationLinkI" % self.OMERO_CLASS) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <TagAnnotationWrapper id=5387>, obj = <CommentAnnotationWrapper id=5388> lnkobjtype = 'NoneAnnotationLinkI' def _linkObject(self, obj, lnkobjtype): """ Saves the object to DB if needed - setting the permissions manually. Creates the object link and saves it, setting permissions manually. TODO: Can't set permissions manually in 4.2 - Assumes world & group writable :param obj: The object to link :type obj: :class:`BlitzObjectWrapper` """ ctx = self._conn.SERVICE_OPTS.copy() ctx.setOmeroGroup(self.details.group.id.val) if not obj.getId(): # Not yet in db, save it obj = obj.__class__( self._conn, self._conn.getUpdateService().saveAndReturnObject( obj._obj, ctx)) > lnk = getattr(omero.model, lnkobjtype)() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ E AttributeError: module 'omero.model' has no attribute 'NoneAnnotationLinkI' ../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1049: AttributeError71testAnnotationAnnotationLinksfalseFAILED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject2.0830testFindExperimenterWithGroupsfalsePASSED1OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject10.065AttributeError: module 'omero.model' has no attribute 'NoneAnnotationLinkI'self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f4747e5ecd0> gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f47195d8d10> author_testimg_tiny = <_ImageWrapper id=5746> def testGetAnnotations(self, gatewaywrapper, author_testimg_tiny): obj = author_testimg_tiny dataset = gatewaywrapper.getTestDataset() ns = "omero.gateway.test.get_objects.test_get_annotations_comment" ns_tag = "omero.gateway.test.get_objects.test_get_annotations_tag" # create Comment ann = omero.gateway.CommentAnnotationWrapper(gatewaywrapper.gateway) ann.setNs(ns) ann.setValue("Test Comment") ann = obj.linkAnnotation(ann) # create Tag tag = omero.gateway.TagAnnotationWrapper(gatewaywrapper.gateway) tag.setNs(ns_tag) tag.setValue("Test Tag") tag = obj.linkAnnotation(tag) dataset.linkAnnotation(tag) # also link the Tag to the Comment > ann.linkAnnotation(tag) test/integration/gatewaytest/test_get_objects.py:549: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1133: in linkAnnotation ann = self._linkAnnotation(ann) ^^^^^^^^^^^^^^^^^^^^^^^^^ ../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1065: in _linkAnnotation return self._linkObject(ann, "%sAnnotationLinkI" % self.OMERO_CLASS) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <CommentAnnotationWrapper id=5283>, obj = <TagAnnotationWrapper id=5284> lnkobjtype = 'NoneAnnotationLinkI' def _linkObject(self, obj, lnkobjtype): """ Saves the object to DB if needed - setting the permissions manually. Creates the object link and saves it, setting permissions manually. TODO: Can't set permissions manually in 4.2 - Assumes world & group writable :param obj: The object to link :type obj: :class:`BlitzObjectWrapper` """ ctx = self._conn.SERVICE_OPTS.copy() ctx.setOmeroGroup(self.details.group.id.val) if not obj.getId(): # Not yet in db, save it obj = obj.__class__( self._conn, self._conn.getUpdateService().saveAndReturnObject( obj._obj, ctx)) > lnk = getattr(omero.model, lnkobjtype)() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ E AttributeError: module 'omero.model' has no attribute 'NoneAnnotationLinkI' ../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1049: AttributeError71testGetAnnotationsfalseFAILED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.0280testGetDatasetsByProjectfalsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject1.6510testGetExperimenterfalsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject4.5820testGetExperimentersByGroup[False]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject4.8220testGetExperimentersByGroup[True]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.1620testGetImagefalsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.0330testGetImageLoadPixels[False-False]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.0350testGetImageLoadPixels[False-True]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.040testGetImageLoadPixels[True-False]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.0490testGetImageLoadPixels[True-True]falsePASSED1OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject3.605AttributeError: 'NoneType' object has no attribute 'id'self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f4747e5f150> def testGetObjectsAnnotation(self): # create new group and user - don't rely on existing test user/group group = self.new_group(perms='rwra--') client, user = self.new_client_and_user(group=group) conn = BlitzGateway(client_obj=client) ann_types = ["CommentAnnotation", "TagAnnotation", "LongAnnotation", "XmlAnnotation", "DoubleAnnotation", "BooleanAnnotation", "TimestampAnnotation", "TermAnnotation"] ns = "test_get_objects_namespace" ns_map = "test_get_objects_map_namespace" ns_file = "test_get_objects_annotation_file" def create_dataset_with_annotations(name, dtype="Dataset"): if dtype == "Dataset": obj = DatasetI() wrapper = omero.gateway.DatasetWrapper(conn, obj) elif dtype == "Project": obj = ProjectI() wrapper = omero.gateway.ProjectWrapper(conn, obj) wrapper.setName(name) wrapper.save() # Create total of 10 annotations on the object... # create Comment, Tag, Xml, etc for ann_type in ann_types: ann = getattr(omero.gateway, ann_type + "Wrapper")(conn) ann.setNs(ns) if ann_type in ("LongAnnotation", "DoubleAnnotation", "TimestampAnnotation"): ann.setValue(100.0) elif ann_type == "BooleanAnnotation": ann.setValue(True) else: ann.setValue("Test %s: %s" % (ann_type, name)) wrapper.linkAnnotation(ann) # create MapAnnotation mapAnn = omero.gateway.MapAnnotationWrapper(conn) mapAnn.setNs(ns) mapAnn.setValue([("key1", "value1"), ("key2", "value2")]) mapAnn.setNs(ns_map) mapAnn.save() wrapper.linkAnnotation(mapAnn) # create FileAnnotation fileAnn = omero.gateway.FileAnnotationWrapper(conn) fileObj = omero.model.OriginalFileI() fileObj = omero.gateway.OriginalFileWrapper(conn, fileObj) fileObj.setName(omero.rtypes.rstring('fileName')) fileObj.setPath(omero.rtypes.rstring('path/to/file')) fileObj.setHash(omero.rtypes.rstring('a')) fileObj.setSize(omero.rtypes.rlong(0)) fileObj.save() fileAnn.setFile(fileObj) fileAnn.setNs(ns_file) fileAnn.save() wrapper.linkAnnotation(fileAnn) return wrapper dataset1 = create_dataset_with_annotations("Dataset 1") dataset2 = create_dataset_with_annotations("Dataset 2") create_dataset_with_annotations("Project 1", dtype="Project") # Add Tag to Group tag = omero.gateway.TagAnnotationWrapper(conn) tag.setNs("test_get_objects_group_tag") tag.setValue("Test Tag on Group") group = conn.getGroupFromContext() > group.linkAnnotation(tag) test/integration/gatewaytest/test_get_objects.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1133: in linkAnnotation ann = self._linkAnnotation(ann) ^^^^^^^^^^^^^^^^^^^^^^^^^ ../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1065: in _linkAnnotation return self._linkObject(ann, "%sAnnotationLinkI" % self.OMERO_CLASS) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <_ExperimenterGroupWrapper id=2745> obj = <omero.gateway.TagAnnotationWrapper object at 0x7f4731e456d0> lnkobjtype = 'ExperimenterGroupAnnotationLinkI' def _linkObject(self, obj, lnkobjtype): """ Saves the object to DB if needed - setting the permissions manually. Creates the object link and saves it, setting permissions manually. TODO: Can't set permissions manually in 4.2 - Assumes world & group writable :param obj: The object to link :type obj: :class:`BlitzObjectWrapper` """ ctx = self._conn.SERVICE_OPTS.copy() > ctx.setOmeroGroup(self.details.group.id.val) ^^^^^^^^^^^^^^^^^^^^^ E AttributeError: 'NoneType' object has no attribute 'id' ../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1042: AttributeError71testGetObjectsAnnotationfalseFAILED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject2.9990testGetObjectsByMapAnnotations[Dataset]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject2.4620testGetObjectsByMapAnnotations[Image]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject4.1630testGetObjectsByMapAnnotations[Plate]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject2.410testGetObjectsByMapAnnotations[Project]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject3.0710testGetObjectsByMapAnnotations[Screen]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.0190testGetProjectfalsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.0050testListColleaguesfalsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject2.8210testListExperimentersAndGroups[False]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject3.1260testListExperimentersAndGroups[True]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.6680testListOrphans[False0-False]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject1.0880testListOrphans[False0-True]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.570testListOrphans[False1-False]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.5510testListOrphans[False1-True]falsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.0180testListProjectsfalsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.4010testOrderByIdfalsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.010testPaginationfalsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject3.7150testSearchObjectsfalsePASSED0OmeroPy.test.integration.gatewaytest.test_get_objects.TestGetObject0.0760testTraversalfalsePASSED3TestGetObject280