Started by upstream project "Trigger" build number 17 originally caused by: Started by user devspace Restarted from build #16, stage OMERO Jars Running as SYSTEM Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training [OMERO-training] $ /bin/bash -xe /tmp/jenkins17989031501097584268.sh + rm -rf /home/omero/workspace/OMERO-training/.venv3 + python3 -m venv /home/omero/workspace/OMERO-training/.venv3 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) Installing collected packages: zeroc-ice Successfully installed zeroc-ice-3.6.5 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. You should consider upgrading via the '/home/omero/workspace/OMERO-training/.venv3/bin/python3 -m pip install --upgrade pip' command. + pip install -U pip future setuptools Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) Collecting pip Using cached pip-24.0-py3-none-any.whl (2.1 MB) Collecting future Using cached future-1.0.0-py3-none-any.whl (491 kB) Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0) Collecting setuptools Using cached setuptools-69.2.0-py3-none-any.whl (821 kB) Installing collected packages: setuptools, pip, future Attempting uninstall: setuptools Found existing installation: setuptools 53.0.0 Uninstalling setuptools-53.0.0: Successfully uninstalled setuptools-53.0.0 Attempting uninstall: pip Found existing installation: pip 21.2.3 Uninstalling pip-21.2.3: Successfully uninstalled pip-21.2.3 Successfully installed future-1.0.0 pip-24.0 setuptools-69.2.0 + pip install markdown Collecting markdown Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) Collecting importlib-metadata>=4.4 (from markdown) Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB) Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) Using cached Markdown-3.6-py3-none-any.whl (105 kB) Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB) Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) Installing collected packages: zipp, importlib-metadata, markdown Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1 + pip install mox3 pytest 'pytest-xdist<2' Collecting mox3 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB) Collecting pytest Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB) Collecting pytest-xdist<2 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB) Collecting pbr!=2.1.0,>=2.0.0 (from mox3) Using cached pbr-6.0.0-py2.py3-none-any.whl.metadata (1.3 kB) Collecting fixtures>=3.0.0 (from mox3) Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB) Collecting iniconfig (from pytest) Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB) Collecting packaging (from pytest) Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) Collecting pluggy<2.0,>=1.4 (from pytest) Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB) Collecting exceptiongroup>=1.0.0rc8 (from pytest) Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB) Collecting tomli>=1 (from pytest) Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB) Collecting execnet>=1.1 (from pytest-xdist<2) Using cached execnet-2.0.2-py3-none-any.whl.metadata (2.9 kB) Collecting pytest-forked (from pytest-xdist<2) Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB) Collecting six (from pytest-xdist<2) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting py 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pytest-xdist Successfully installed exceptiongroup-1.2.0 execnet-2.0.2 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.0 pbr-6.0.0 pluggy-1.4.0 py-1.11.0 pytest-8.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.16.0 tomli-2.0.1 + pip install tables Collecting tables Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) Collecting numpy>=1.19.0 (from tables) Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Collecting numexpr>=2.6.2 (from tables) Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.0) Collecting py-cpuinfo (from tables) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting blosc2>=2.3.0 (from tables) Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 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numexpr-2.9.0 numpy-1.26.4 py-cpuinfo-9.0.0 tables-3.9.2 + pip install jinja2 Collecting jinja2 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) Collecting MarkupSafe>=2.0 (from jinja2) Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Installing collected packages: MarkupSafe, jinja2 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-py-5.19.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties Copied 5 artifacts from "OMERO-python-superbuild-build" build number 14 Copied 2 artifacts from "OMERO-build" build number 14 Copied 2 artifacts from "OMERO-build-build" build number 14 [OMERO-training] $ /bin/bash -xe /tmp/jenkins2469489845420881834.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties + 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inflating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql creating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/ inflating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql creating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/ inflating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: openmicroscopy-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql creating: 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openmicroscopy-5.6.3-437-54c08a8db8-ice36.zip + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-437-54c08a8db8-ice36 /home/omero/workspace/OMERO-training/openmicroscopy + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server ++ ls OMERO.server-5.6.3-437-54c08a8db8-ice36.zip + ZIP=OMERO.server-5.6.3-437-54c08a8db8-ice36.zip + DIST=OMERO.server-5.6.3-437-54c08a8db8-ice36 + unzip -n OMERO.server-5.6.3-437-54c08a8db8-ice36.zip Archive: OMERO.server-5.6.3-437-54c08a8db8-ice36.zip creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/blitz/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/grid/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/profiles/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/error/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/grid/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/luts/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/luts/janelia/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/luts/ncsa_paledit/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/luts/wcif/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/analysis_scripts/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/annotation_scripts/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/export_scripts/ creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/figure_scripts/ creating: 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OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/server/xercesImpl.jar inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/server/xml-apis-ext.jar inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/server/xml-apis.jar inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/server/xmlgraphics-commons.jar inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/server/xmpcore.jar inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/server/xpp3.jar inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/README inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/agpl.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/antlr.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/apache-v1.1.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/apache-v2.0.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/asm.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/bouncy_castle_license.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/bsd.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/cddl-v1.0.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/cpl-v10.html inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/crystalclear.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/django.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/dom4j.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/epl-v1.0.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/fbsd.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/freemarker.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/gpl-v2.0.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/gpl.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/gtest.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/iconsweets_license.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/jamon.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/jmock.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/jquery.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/jtidy.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/lgpl-3.0.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/lgpl-v2.0.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/lgpl-v2.1.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/lgpl-v3.0.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/lgpl.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/matplotlib.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/mit.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/mpl-v1_0.htm inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/npl-1_1.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/path.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/pil.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/postgresql.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/psf-v2.0.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/psf-v2.5.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/scons.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/slf4j.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/tablelayout.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/which.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/zlib-libpng.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/zpl-v2.1.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/README.txt inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/misc/Makefile inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/misc/current.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/misc/enums.py inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3__4/OMERO3__1.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3__5/OMERO3__4.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3__6/OMERO3__5.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3__7/OMERO3__6.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/psql-footer.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/psql-header.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/schema.sql inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/views.sql + rm -f OMERO.server-5.6.3-437-54c08a8db8-ice36.zip + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-437-54c08a8db8-ice36 /home/omero/workspace/OMERO-training/OMERO.server + source /home/omero/workspace/OMERO-training/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + for x in *.gz + pip install omero-dropbox-5.6.3.dev0.tar.gz Processing ./omero-dropbox-5.6.3.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting omero-py (from omero-dropbox==5.6.3.dev0) Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB) Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0) Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0) Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4) Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0) Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB) Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5) Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0) Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0) Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB) Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0) Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0) Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB) Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Using cached portalocker-2.8.2-py3-none-any.whl (17 kB) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) Using cached requests-2.31.0-py3-none-any.whl (62 kB) Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) Using cached idna-3.6-py3-none-any.whl (61 kB) Building wheels for collected packages: omero-dropbox Building wheel for omero-dropbox (pyproject.toml): started Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=998d9b677299866d9a0ec63e4a7170eb85ea265ef597f2b10aa7200950526843 Stored in directory: /home/omero/.cache/pip/wheels/70/da/3d/331719007048e84a6ccfa834fcb865d58e6f5e47143b222b43 Successfully built omero-dropbox Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox Successfully installed Pillow-10.2.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-dropbox-5.6.3.dev0 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18 + for x in *.gz + pip install omero_marshal-0.9.1.dev0.tar.gz Processing ./omero_marshal-0.9.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero_marshal Building wheel for omero_marshal (pyproject.toml): started Building wheel for omero_marshal (pyproject.toml): finished with status 'done' Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=fecf7b7290c213cbe968f6f126e8050433c7d19604cd8f30882c4bd59fcb9524 Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35 Successfully built omero_marshal Installing collected packages: omero_marshal Successfully installed omero_marshal-0.9.1.dev0 + for x in *.gz + pip install omero-py-5.19.2.dev0.tar.gz Processing ./omero-py-5.19.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18) Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0) Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.2.0) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0) Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.6) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2) Building wheels for collected packages: omero-py Building wheel for omero-py (pyproject.toml): started Building wheel for omero-py (pyproject.toml): finished with status 'done' Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2781847 sha256=4491971d36a4c9d232115401548c17603b9873030ec0711232f42a6af2b43d2e Stored in directory: /home/omero/.cache/pip/wheels/9f/8a/96/ff4bfe740f086274aebfc36457d9e011becbee746485593d12 Successfully built omero-py Installing collected packages: omero-py Attempting uninstall: omero-py Found existing installation: omero-py 5.19.1 Uninstalling omero-py-5.19.1: Successfully uninstalled omero-py-5.19.1 Successfully installed omero-py-5.19.2.dev0 + for x in *.gz + pip install omero-scripts-5.8.1.dev0.tar.gz Processing ./omero-scripts-5.8.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero-scripts Building wheel for omero-scripts (pyproject.toml): started Building wheel for omero-scripts (pyproject.toml): finished with status 'done' Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=5260756d335a6aa34f3a0aab7a97b33e4ac24e490ef22bab371dfc4392a54394 Stored in directory: /home/omero/.cache/pip/wheels/bf/20/bf/f0e89c5f6fcd6f4ff1c089bc6b449e017b94b2f6b6c2593196 Successfully built omero-scripts Installing collected packages: omero-scripts Successfully installed omero-scripts-5.8.1.dev0 + for x in *.gz + pip install omero-web-5.25.1.dev0.tar.gz Processing ./omero-web-5.25.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0) Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0) Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0) Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB) Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0) Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0) Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) Collecting django-csp (from omero-web==5.25.1.dev0) Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0) Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB) Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0) Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0) Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0) Collecting pytz (from omero-web==5.25.1.dev0) Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2) Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0) Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB) Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18) Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0) Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0) Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2) Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) Using cached Django-4.2.11-py3-none-any.whl (8.0 MB) Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB) Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB) Using cached django_csp-3.8-py3-none-any.whl (17 kB) Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB) Building wheels for collected packages: omero-web Building wheel for omero-web (pyproject.toml): started Building wheel for omero-web (pyproject.toml): finished with status 'done' Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=330fd0f6dadc2afb903df6d7be320daa6cd9ba9e50d76d5b62ceb127919dd07a Stored in directory: /home/omero/.cache/pip/wheels/27/e6/a8/3c62891eccbd4759036a66343d82d7ebc8ff45e9a0976cd8c7 Successfully built omero-web Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0 + cd /home/omero/workspace/OMERO-training/OMERO.server + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh + HOSTNAME=d6309de3f85a + PORT=4064 + WEBHOST=http://nginx/web + SERVER_NAME=omero + ROOT_PASSWORD=omero + GROUP_NAME=training_group + GROUP_NAME_2=training_group-2 + USER_NAME=training_user + USER_NAME_2=training_user-2 + LIGHTADMIN_USER_NAME=ladmin_user + USER_PASSWORD=ome + CONFIG_FILENAME=training_ice.config + omero login root@d6309de3f85a:4064 -w omero Created session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system + omero group add training_group --type read-only --ignore-existing Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system Group exists: training_group (id=3) + omero group add training_group-2 --type read-only --ignore-existing Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system Group exists: training_group-2 (id=4) + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system User exists: training_user (id=2) + omero user joingroup --name training_user --group-name training_group training_group-2 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system 2 is already in group 3 2 is already in group 4 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system User exists: training_user-2 (id=3) + omero user joingroup --name training_user-2 --group-name training_group training_group-2 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system 3 is already in group 3 3 is already in group 4 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system User exists: ladmin_user (id=4) + omero user joingroup --name ladmin_user --group-name training_group training_group-2 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system 4 is already in group 3 4 is already in group 4 ++ omero user info ladmin_user --style plain ++ cut -d, -f1 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system + id=4 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system Experimenter:4 + omero logout + touch test.fake + omero login training_user@d6309de3f85a:4064 -w ome -g training_group Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + nProjects=1 + nDatasets=2 + echo 'Creating projects and datasets' Creating projects and datasets + (( i=1 )) + (( i<=1 )) ++ omero obj new Project 'name=Project 1' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + project=Project:551 + (( j=1 )) + (( j<=2 )) ++ omero obj new Dataset 'name=Dataset 1-1' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + dataset=Dataset:601 + omero obj new ProjectDatasetLink parent=Project:551 child=Dataset:601 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group ProjectDatasetLink:551 + echo 'Importing image into dataset' Importing image into dataset + omero import -d Dataset:601 test.fake --debug ERROR Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group 2024-03-27 14:36:38,162 246 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT 2024-03-27 14:36:38,177 261 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 6db045849120ce622ca77e80fca6eb6607aad9f7 date: 27 March 2024 Image:2801 Other imported objects: Fileset:2151 ==> Summary 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.221 + (( j++ )) + (( j<=2 )) ++ omero obj new Dataset 'name=Dataset 1-2' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + dataset=Dataset:602 + omero obj new ProjectDatasetLink parent=Project:551 child=Dataset:602 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group ProjectDatasetLink:552 + echo 'Importing image into dataset' Importing image into dataset + omero import -d Dataset:602 test.fake --debug ERROR Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group 2024-03-27 14:36:45,013 252 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT 2024-03-27 14:36:45,028 267 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 6db045849120ce622ca77e80fca6eb6607aad9f7 date: 27 March 2024 Image:2802 Other imported objects: Fileset:2152 ==> Summary 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.109 + (( j++ )) + (( j<=2 )) + (( i++ )) + (( i<=1 )) + (( j=1 )) + (( j<=2 )) + omero obj new Dataset 'name=Orphaned dataset 1' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Dataset:603 + (( j++ )) + (( j<=2 )) + omero obj new Dataset 'name=Orphaned dataset 2' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Dataset:604 + (( j++ )) + (( j<=2 )) + echo 'Importing image file' Importing image file + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake' + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake' ++ sed -n -e 's/^Image://p' image_import.log + imageid=2803 ++ omero obj new MapAnnotation Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + MAP=MapAnnotation:1651 + omero obj map-set MapAnnotation:1651 mapValue testkey testvalue Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group MapAnnotation:1651 + omero obj new ImageAnnotationLink parent=Image:2803 child=MapAnnotation:1651 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group ImageAnnotationLink:651 ++ omero obj new Screen name=Screen Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + screen=Screen:451 ++ omero obj new Plate name=Plate Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + plate=Plate:551 + omero obj new ScreenPlateLink parent=Screen:451 child=Plate:551 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group ScreenPlateLink:451 + echo 'Importing SPW file' Importing SPW file + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' + omero import -r Screen:451 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' ++ sed -n -e 's/^Plate://p' plate_import.log + plateid=552 + omero logout + omero login training_user-2@d6309de3f85a:4064 -w ome -g training_group Created session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + omero obj new Project 'name=Project 0' Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Project:552 + omero obj new Dataset 'name=Dataset 0' Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Dataset:605 + omero import test.fake --debug ERROR Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group 2024-03-27 14:37:09,445 265 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT 2024-03-27 14:37:09,462 282 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 6db045849120ce622ca77e80fca6eb6607aad9f7 date: 27 March 2024 Image:2807 Other imported objects: Fileset:2155 ==> Summary 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.715 + omero obj new Screen name=Screen Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Screen:452 + omero obj new Plate name=Plate Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Plate:553 + omero login training_user@d6309de3f85a:4064 -w ome -g training_group-2 Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 + omero obj new Project 'name=Project 0' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 Project:553 + omero obj new Dataset 'name=Dataset 0' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 Dataset:606 + omero import test.fake --debug ERROR Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 2024-03-27 14:37:17,393 262 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT 2024-03-27 14:37:17,409 278 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 6db045849120ce622ca77e80fca6eb6607aad9f7 date: 27 March 2024 Image:2808 Other imported objects: Fileset:2156 ==> Summary 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.617 + omero obj new Screen name=Screen Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 Screen:453 + omero obj new Plate name=Plate Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 Plate:554 + omero logout + echo omero.host=d6309de3f85a + echo omero.port=4064 + echo omero.webhost=http://nginx/web + echo omero.servername=omero + echo omero.user=training_user + echo omero.pass=ome + echo omero.group=training_group + echo omero.projectid=551 + echo omero.datasetid=602 + echo omero.imageid=2803 + echo omero.plateid=552 + echo omero.screenid=451 + echo omero.group2=training_group-2 + echo omero.ladmin=ladmin_user + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake' + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training + omero sessions clear 1 session(s) cleared !! 03/27/24 14:37:23.840 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config + pip install --upgrade requests Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0) Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.6) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18) Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2) + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python Running training suite created 20 shapes retrieved 20 shapes in 4 batches Current user: ID: 2 Username: training_user Full Name: training_user training_user Is Admin: False [] Member of: ID: 3 Name: training_group ID: 4 Name: training_group-2 Current group: training_group Group owners: Group members: ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user ID: 2 UserName: training_user Name: training_user training_user Owner of: Admins: ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user ID: 113 UserName: Name: ID: 0 UserName: root Name: root root ID: 107 UserName: Name: ID: 119 UserName: Name: Created new Image:2809 Name:"numpy image" newPlane for z,t: 0 0 uint8 0 127 newPlane for z,t: 0 1 uint8 0 127 newPlane for z,t: 0 2 uint8 0 127 newPlane for z,t: 0 3 uint8 0 127 newPlane for z,t: 0 4 uint8 0 127 newPlane for z,t: 0 5 uint8 0 127 newPlane for z,t: 0 6 uint8 0 127 newPlane for z,t: 0 7 uint8 0 127 newPlane for z,t: 0 8 uint8 0 127 newPlane for z,t: 0 9 uint8 0 127 newPlane for z,t: 1 0 uint8 0 127 newPlane for z,t: 1 1 uint8 0 127 newPlane for z,t: 1 2 uint8 0 127 newPlane for z,t: 1 3 uint8 0 127 newPlane for z,t: 1 4 uint8 0 127 newPlane for z,t: 1 5 uint8 0 127 newPlane for z,t: 1 6 uint8 0 127 newPlane for z,t: 1 7 uint8 0 127 newPlane for z,t: 1 8 uint8 0 127 newPlane for z,t: 1 9 uint8 0 127 newPlane for z,t: 2 0 uint8 0 127 newPlane for z,t: 2 1 uint8 0 127 newPlane for z,t: 2 2 uint8 0 127 newPlane for z,t: 2 3 uint8 0 127 newPlane for z,t: 2 4 uint8 0 127 newPlane for z,t: 2 5 uint8 0 127 newPlane for z,t: 2 6 uint8 0 127 newPlane for z,t: 2 7 uint8 0 127 newPlane for z,t: 2 8 uint8 0 127 newPlane for z,t: 2 9 uint8 0 127 newPlane for z,t: 3 0 uint8 0 127 newPlane for z,t: 3 1 uint8 0 127 newPlane for z,t: 3 2 uint8 0 127 newPlane for z,t: 3 3 uint8 0 127 newPlane for z,t: 3 4 uint8 0 127 newPlane for z,t: 3 5 uint8 0 127 newPlane for z,t: 3 6 uint8 0 127 newPlane for z,t: 3 7 uint8 0 127 newPlane for z,t: 3 8 uint8 0 127 newPlane for z,t: 3 9 uint8 0 127 newPlane for z,t: 4 0 uint8 0 127 newPlane for z,t: 4 1 uint8 0 127 newPlane for z,t: 4 2 uint8 0 127 newPlane for z,t: 4 3 uint8 0 127 newPlane for z,t: 4 4 uint8 0 127 newPlane for z,t: 4 5 uint8 0 127 newPlane for z,t: 4 6 uint8 0 127 newPlane for z,t: 4 7 uint8 0 127 newPlane for z,t: 4 8 uint8 0 127 newPlane for z,t: 4 9 uint8 0 127 Deleting, please wait. Error? False 2803 test&sizeT=10&sizeZ=5&sizeC=3.fake training_user_2/Blitz-0-Ice.ThreadPool.Server-7/2024-03/27/14-36-51.905/ test&sizeT=10&sizeZ=5&sizeC=3.fake 1 training_user_2/Blitz-0-Ice.ThreadPool.Server-7/2024-03/27/14-36-51.905/ test&sizeT=10&sizeZ=5&sizeC=3.fake Current group: training_group Permissions: READ-ONLY (rwr---) Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Image: <_ImageWrapper id=2803> Image: <_ImageWrapper id=2803> Group: training_group 3 Image: <_ImageWrapper id=2803> Channel: 0 Channel: 1 Channel: 2 original_metadata global_metadata series_metadata Plane at zct: 0 0 0 [[ 0 0 0 ... 253 254 255] [ 0 0 0 ... 253 254 255] [ 0 0 0 ... 253 254 255] ... [ 0 1 2 ... 253 254 255] [ 0 1 2 ... 253 254 255] [ 0 1 2 ... 253 254 255]] shape: (512, 512) min: 0 max: 255 pixel type: uint8 Z stack of tiles: Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Hyper stack of planes: plane zct: (2, 0, 0) min: 0 max: 255 plane zct: (2, 0, 1) min: 0 max: 255 plane zct: (2, 0, 2) min: 0 max: 255 plane zct: (2, 0, 3) min: 0 max: 255 plane zct: (2, 0, 4) min: 0 max: 255 plane zct: (2, 0, 5) min: 0 max: 255 plane zct: (2, 0, 6) min: 0 max: 255 plane zct: (2, 0, 7) min: 0 max: 255 plane zct: (2, 0, 8) min: 0 max: 255 plane zct: (2, 0, 9) min: 0 max: 255 plane zct: (2, 1, 0) min: 0 max: 255 plane zct: (2, 1, 1) min: 0 max: 255 plane zct: (2, 1, 2) min: 0 max: 255 plane zct: (2, 1, 3) min: 0 max: 255 plane zct: (2, 1, 4) min: 0 max: 255 plane zct: (2, 1, 5) min: 0 max: 255 plane zct: (2, 1, 6) min: 0 max: 255 plane zct: (2, 1, 7) min: 0 max: 255 plane zct: (2, 1, 8) min: 0 max: 255 plane zct: (2, 1, 9) min: 0 max: 255 plane zct: (2, 2, 0) min: 0 max: 255 plane zct: (2, 2, 1) min: 0 max: 255 plane zct: (2, 2, 2) min: 0 max: 255 plane zct: (2, 2, 3) min: 0 max: 255 plane zct: (2, 2, 4) min: 0 max: 255 plane zct: (2, 2, 5) min: 0 max: 255 plane zct: (2, 2, 6) min: 0 max: 255 plane zct: (2, 2, 7) min: 0 max: 255 plane zct: (2, 2, 8) min: 0 max: 255 plane zct: (2, 2, 9) min: 0 max: 255 plane zct: (3, 0, 0) min: 0 max: 255 plane zct: (3, 0, 1) min: 0 max: 255 plane zct: (3, 0, 2) min: 0 max: 255 plane zct: (3, 0, 3) min: 0 max: 255 plane zct: (3, 0, 4) min: 0 max: 255 plane zct: (3, 0, 5) min: 0 max: 255 plane zct: (3, 0, 6) min: 0 max: 255 plane zct: (3, 0, 7) min: 0 max: 255 plane zct: (3, 0, 8) min: 0 max: 255 plane zct: (3, 0, 9) min: 0 max: 255 plane zct: (3, 1, 0) min: 0 max: 255 plane zct: (3, 1, 1) min: 0 max: 255 plane zct: (3, 1, 2) min: 0 max: 255 plane zct: (3, 1, 3) min: 0 max: 255 plane zct: (3, 1, 4) min: 0 max: 255 plane zct: (3, 1, 5) min: 0 max: 255 plane zct: (3, 1, 6) min: 0 max: 255 plane zct: (3, 1, 7) min: 0 max: 255 plane zct: (3, 1, 8) min: 0 max: 255 plane zct: (3, 1, 9) min: 0 max: 255 plane zct: (3, 2, 0) min: 0 max: 255 plane zct: (3, 2, 1) min: 0 max: 255 plane zct: (3, 2, 2) min: 0 max: 255 plane zct: (3, 2, 3) min: 0 max: 255 plane zct: (3, 2, 4) min: 0 max: 255 plane zct: (3, 2, 5) min: 0 max: 255 plane zct: (3, 2, 6) min: 0 max: 255 plane zct: (3, 2, 7) min: 0 max: 255 plane zct: (3, 2, 8) min: 0 max: 255 plane zct: (3, 2, 9) min: 0 max: 255 plane zct: (4, 0, 0) min: 0 max: 255 plane zct: (4, 0, 1) min: 0 max: 255 plane zct: (4, 0, 2) min: 0 max: 255 plane zct: (4, 0, 3) min: 0 max: 255 plane zct: (4, 0, 4) min: 0 max: 255 plane zct: (4, 0, 5) min: 0 max: 255 plane zct: (4, 0, 6) min: 0 max: 255 plane zct: (4, 0, 7) min: 0 max: 255 plane zct: (4, 0, 8) min: 0 max: 255 plane zct: (4, 0, 9) min: 0 max: 255 plane zct: (4, 1, 0) min: 0 max: 255 plane zct: (4, 1, 1) min: 0 max: 255 plane zct: (4, 1, 2) min: 0 max: 255 plane zct: (4, 1, 3) min: 0 max: 255 plane zct: (4, 1, 4) min: 0 max: 255 plane zct: (4, 1, 5) min: 0 max: 255 plane zct: (4, 1, 6) min: 0 max: 255 plane zct: (4, 1, 7) min: 0 max: 255 plane zct: (4, 1, 8) min: 0 max: 255 plane zct: (4, 1, 9) min: 0 max: 255 plane zct: (4, 2, 0) min: 0 max: 255 plane zct: (4, 2, 1) min: 0 max: 255 plane zct: (4, 2, 2) min: 0 max: 255 plane zct: (4, 2, 3) min: 0 max: 255 plane zct: (4, 2, 4) min: 0 max: 255 plane zct: (4, 2, 5) min: 0 max: 255 plane zct: (4, 2, 6) min: 0 max: 255 plane zct: (4, 2, 7) min: 0 max: 255 plane zct: (4, 2, 8) min: 0 max: 255 plane zct: (4, 2, 9) min: 0 max: 255 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]} List Projects: ================================================== Project:1 Name:"Project 1" (owner=training_user) Dataset:1 Name:"Dataset 1-1" (owner=training_user) Image:1 Name:"test.fake" (owner=training_user) Dataset:2 Name:"Dataset 1-2" (owner=training_user) Image:12 Name:"New Image" (owner=training_user) Image:13 Name:"newImageFrom3" (owner=training_user) Image:2 Name:"test.fake" (owner=training_user) Dataset:7 Name:"New Dataset" (owner=training_user) Dataset:17 Name:"new Name 1" (owner=training_user) Dataset:18 Name:"new Name 2" (owner=training_user) Project:51 Name:"Project 1" (owner=training_user) Dataset:51 Name:"Dataset 1-1" (owner=training_user) Image:51 Name:"test.fake" (owner=training_user) Dataset:52 Name:"Dataset 1-2" (owner=training_user) Image:62 Name:"New Image" (owner=training_user) Image:63 Name:"newImageFrom53" (owner=training_user) Image:52 Name:"test.fake" (owner=training_user) Dataset:57 Name:"New Dataset" (owner=training_user) Dataset:67 Name:"new Name 1" (owner=training_user) Dataset:68 Name:"new Name 2" (owner=training_user) Project:101 Name:"Project 1" (owner=training_user) Dataset:101 Name:"Dataset 1-1" (owner=training_user) Image:101 Name:"test.fake" (owner=training_user) Dataset:102 Name:"Dataset 1-2" (owner=training_user) Image:112 Name:"New Image" (owner=training_user) Image:113 Name:"newImageFrom103" (owner=training_user) Image:102 Name:"test.fake" (owner=training_user) Dataset:107 Name:"New Dataset" (owner=training_user) Dataset:117 Name:"new Name 1" (owner=training_user) Dataset:118 Name:"new Name 2" (owner=training_user) Project:151 Name:"Project 1" (owner=training_user) Dataset:151 Name:"Dataset 1-1" (owner=training_user) Image:151 Name:"test.fake" (owner=training_user) Dataset:152 Name:"Dataset 1-2" (owner=training_user) Image:162 Name:"New Image" (owner=training_user) Image:163 Name:"newImageFrom153" (owner=training_user) Image:152 Name:"test.fake" (owner=training_user) Dataset:157 Name:"New Dataset" (owner=training_user) Dataset:167 Name:"new Name 1" (owner=training_user) Dataset:168 Name:"new Name 2" (owner=training_user) Project:301 Name:"Project 1" (owner=training_user) Dataset:351 Name:"Dataset 1-1" (owner=training_user) Image:2551 Name:"test.fake" (owner=training_user) Dataset:352 Name:"Dataset 1-2" (owner=training_user) Image:2562 Name:"New Image" (owner=training_user) Image:2563 Name:"newImageFrom2553" (owner=training_user) Image:2552 Name:"test.fake" (owner=training_user) Dataset:357 Name:"New Dataset" (owner=training_user) Dataset:367 Name:"new Name 1" (owner=training_user) Dataset:368 Name:"new Name 2" (owner=training_user) List orphaned Datasets: ================================================== Dataset:3 Name:"Orphaned dataset 1" (owner=training_user) Dataset:4 Name:"Orphaned dataset 2" (owner=training_user) Dataset:5 Name:"Dataset 0" (owner=training_user-2) Dataset:8 Name:"MyDataset" (owner=training_user) Dataset:9 Name:"MyDataset" (owner=training_user) Dataset:10 Name:"MyDataset" (owner=training_user) Dataset:11 Name:"New Dataset" (owner=training_user) Dataset:12 Name:"New Dataset2" (owner=training_user) Dataset:13 Name:"FileAnnotationDelete" (owner=training_user) Dataset:14 Name:"MyDataset" (owner=training_user) Dataset:15 Name:"MyDataset" (owner=training_user) Dataset:16 Name:"MyDataset" (owner=training_user) Dataset:53 Name:"Orphaned dataset 1" (owner=training_user) Dataset:54 Name:"Orphaned dataset 2" (owner=training_user) Dataset:55 Name:"Dataset 0" (owner=training_user-2) Dataset:58 Name:"MyDataset" (owner=training_user) Dataset:59 Name:"MyDataset" (owner=training_user) Dataset:60 Name:"MyDataset" (owner=training_user) Dataset:61 Name:"New Dataset" (owner=training_user) Dataset:62 Name:"New Dataset2" (owner=training_user) Dataset:63 Name:"FileAnnotationDelete" (owner=training_user) Dataset:64 Name:"MyDataset" (owner=training_user) Dataset:65 Name:"MyDataset" (owner=training_user) Dataset:66 Name:"MyDataset" (owner=training_user) Dataset:103 Name:"Orphaned dataset 1" (owner=training_user) Dataset:104 Name:"Orphaned dataset 2" (owner=training_user) Dataset:105 Name:"Dataset 0" (owner=training_user-2) Dataset:108 Name:"MyDataset" (owner=training_user) Dataset:109 Name:"MyDataset" (owner=training_user) Dataset:110 Name:"MyDataset" (owner=training_user) Dataset:111 Name:"New Dataset" (owner=training_user) Dataset:112 Name:"New Dataset2" (owner=training_user) Dataset:113 Name:"FileAnnotationDelete" (owner=training_user) Dataset:114 Name:"MyDataset" (owner=training_user) Dataset:115 Name:"MyDataset" (owner=training_user) Dataset:116 Name:"MyDataset" (owner=training_user) Dataset:153 Name:"Orphaned dataset 1" (owner=training_user) Dataset:154 Name:"Orphaned dataset 2" (owner=training_user) Dataset:155 Name:"Dataset 0" (owner=training_user-2) Dataset:158 Name:"MyDataset" (owner=training_user) Dataset:159 Name:"MyDataset" (owner=training_user) Dataset:160 Name:"MyDataset" (owner=training_user) Dataset:161 Name:"New Dataset" (owner=training_user) Dataset:162 Name:"New Dataset2" (owner=training_user) Dataset:163 Name:"FileAnnotationDelete" (owner=training_user) Dataset:164 Name:"MyDataset" (owner=training_user) Dataset:165 Name:"MyDataset" (owner=training_user) Dataset:166 Name:"MyDataset" (owner=training_user) Dataset:353 Name:"Orphaned dataset 1" (owner=training_user) Dataset:354 Name:"Orphaned dataset 2" (owner=training_user) Dataset:355 Name:"Dataset 0" (owner=training_user-2) Dataset:358 Name:"MyDataset" (owner=training_user) Dataset:359 Name:"MyDataset" (owner=training_user) Dataset:360 Name:"MyDataset" (owner=training_user) Dataset:361 Name:"New Dataset" (owner=training_user) Dataset:362 Name:"New Dataset2" (owner=training_user) Dataset:363 Name:"FileAnnotationDelete" (owner=training_user) Dataset:364 Name:"MyDataset" (owner=training_user) Dataset:365 Name:"MyDataset" (owner=training_user) Dataset:366 Name:"MyDataset" (owner=training_user) Dataset:403 Name:"Orphaned dataset 1" (owner=training_user) Dataset:404 Name:"Orphaned dataset 2" (owner=training_user) Dataset:405 Name:"Dataset 0" (owner=training_user-2) Dataset:408 Name:"MyDataset" (owner=training_user) Dataset:409 Name:"MyDataset" (owner=training_user) Dataset:410 Name:"MyDataset" (owner=training_user) Dataset:411 Name:"New Dataset" (owner=training_user) Dataset:412 Name:"New Dataset2" (owner=training_user) :150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. Dataset:413 Name:"FileAnnotationDelete" (owner=training_user) Dataset:414 Name:"MyDataset" (owner=training_user) Dataset:415 Name:"MyDataset" (owner=training_user) Dataset:416 Name:"MyDataset" (owner=training_user) Dataset:453 Name:"Orphaned dataset 1" (owner=training_user) Dataset:454 Name:"Orphaned dataset 2" (owner=training_user) Dataset:455 Name:"Dataset 0" (owner=training_user-2) Dataset:458 Name:"MyDataset" (owner=training_user) Dataset:459 Name:"MyDataset" (owner=training_user) Dataset:460 Name:"MyDataset" (owner=training_user) Dataset:461 Name:"New Dataset" (owner=training_user) Dataset:462 Name:"New Dataset2" (owner=training_user) Dataset:463 Name:"FileAnnotationDelete" (owner=training_user) Dataset:464 Name:"MyDataset" (owner=training_user) Dataset:465 Name:"MyDataset" (owner=training_user) Dataset:466 Name:"MyDataset" (owner=training_user) Dataset:503 Name:"Orphaned dataset 1" (owner=training_user) Dataset:504 Name:"Orphaned dataset 2" (owner=training_user) Dataset:505 Name:"Dataset 0" (owner=training_user-2) Dataset:508 Name:"MyDataset" (owner=training_user) Dataset:509 Name:"MyDataset" (owner=training_user) Dataset:510 Name:"MyDataset" (owner=training_user) Dataset:511 Name:"New Dataset" (owner=training_user) Dataset:512 Name:"New Dataset2" (owner=training_user) Dataset:513 Name:"FileAnnotationDelete" (owner=training_user) Dataset:514 Name:"MyDataset" (owner=training_user) Dataset:515 Name:"MyDataset" (owner=training_user) Dataset:516 Name:"MyDataset" (owner=training_user) Dataset:553 Name:"Orphaned dataset 1" (owner=training_user) Dataset:554 Name:"Orphaned dataset 2" (owner=training_user) Dataset:555 Name:"Dataset 0" (owner=training_user-2) Dataset:558 Name:"MyDataset" (owner=training_user) Dataset:559 Name:"MyDataset" (owner=training_user) Dataset:560 Name:"MyDataset" (owner=training_user) Dataset:561 Name:"New Dataset" (owner=training_user) Dataset:562 Name:"New Dataset2" (owner=training_user) Dataset:563 Name:"FileAnnotationDelete" (owner=training_user) Dataset:564 Name:"MyDataset" (owner=training_user) Dataset:565 Name:"MyDataset" (owner=training_user) Dataset:566 Name:"MyDataset" (owner=training_user) Dataset:603 Name:"Orphaned dataset 1" (owner=training_user) Dataset:604 Name:"Orphaned dataset 2" (owner=training_user) Dataset:605 Name:"Dataset 0" (owner=training_user-2) Images in Dataset: 602 ================================================== Image:2802 Name:"test.fake" (owner=training_user) Image:2803 ================================================== test&sizeT=10&sizeZ=5&sizeC=3.fake X: 512 Y: 512 Z: 5 C: 3 T: 10 Channel: 0 Color: (255, 0, 0) Lookup table: None Is reverse intensity? False Channel: 1 Color: (0, 255, 0) Lookup table: None Is reverse intensity? False Channel: 2 Color: (0, 0, 255) Lookup table: None Is reverse intensity? False Pixel Size X: None List Screens: ================================================== Screen:451 Name:"Screen" (owner=training_user) Plate:551 Name:"Plate" (owner=training_user) Plate:552 Name:"Plate Name 0" (owner=training_user) Screen:401 Name:"Screen" (owner=training_user) Plate:501 Name:"Plate" (owner=training_user) Plate:502 Name:"Plate Name 0" (owner=training_user) Screen:351 Name:"Screen" (owner=training_user) Plate:451 Name:"Plate" (owner=training_user) Plate:452 Name:"Plate Name 0" (owner=training_user) Screen:301 Name:"Screen" (owner=training_user) Plate:401 Name:"Plate" (owner=training_user) Plate:402 Name:"Plate Name 0" (owner=training_user) Screen:251 Name:"Screen" (owner=training_user) Plate:351 Name:"Plate" (owner=training_user) Plate:352 Name:"Plate Name 0" (owner=training_user) Screen:201 Name:"Screen" (owner=training_user) Plate:301 Name:"Plate" (owner=training_user) Plate:302 Name:"Plate Name 0" (owner=training_user) Screen:151 Name:"Screen" (owner=training_user) Plate:151 Name:"Plate" (owner=training_user) Plate:152 Name:"Plate Name 0" (owner=training_user) Screen:101 Name:"Screen" (owner=training_user) Plate:101 Name:"Plate" (owner=training_user) Plate:102 Name:"Plate Name 0" (owner=training_user) Screen:51 Name:"Screen" (owner=training_user) Plate:51 Name:"Plate" (owner=training_user) Plate:52 Name:"Plate Name 0" (owner=training_user) Screen:1 Name:"Screen" (owner=training_user) Plate:1 Name:"Plate" (owner=training_user) Plate:2 Name:"Plate Name 0" (owner=training_user) Screen:452 Name:"Screen" (owner=training_user-2) Screen:402 Name:"Screen" (owner=training_user-2) Screen:352 Name:"Screen" (owner=training_user-2) Screen:302 Name:"Screen" (owner=training_user-2) Screen:252 Name:"Screen" (owner=training_user-2) Screen:202 Name:"Screen" (owner=training_user-2) Screen:152 Name:"Screen" (owner=training_user-2) Screen:102 Name:"Screen" (owner=training_user-2) Screen:52 Name:"Screen" (owner=training_user-2) Screen:2 Name:"Screen" (owner=training_user-2) Plate:552 ================================================== Number of fields: (0, 0) Grid size: {'rows': 1, 'columns': 3} Wells in Plate: Plate Name 0 Well: 0 0 Fields: 1 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 2804 Well: 0 1 Fields: 1 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 2805 Well: 0 2 Fields: 1 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 2806 1651 added by training_user Image ID: 2803 Annotation ID: 1651 2803 Channel rendering settings: Name: 0 Color: FF0000 Active: True Levels: 0.0 - 255.0 Name: 1 Color: 00FF00 Active: True Levels: 0.0 - 255.0 Name: 2 Color: 0000FF Active: True Levels: 0.0 - 255.0 isGreyscaleRenderingModel: False Default Z/T positions: Z = 2, T = 0 Rendering Defs on Image: ID: 2753 (owner: training_user training_user) Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50 ROI: ID: 452 Shape: id 471 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0 Shape: id 472 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0 ROI: ID: 453 Shape: id 473 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0 ROI: ID: 454 Shape: id 474 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0 ROI: ID: 455 Shape: id 475 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0 ROI: ID: 456 Not supported by this code Shape: id 476 theT 0 theZ 2 textValue test-Polygon Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0 Removing Shape from ROI... Deleting ROI: 457 Table Columns: Uid MyStringColumnInit Row count: 10 Get All Data for rows: [3, 5, 7] Data for Column: Uid 1 2 3 4 5 6 7 8 9 10 Data for Column: MyStringColumnInit one two three four five six seven eight nine ten Get All Data for rows with slice: [3, 5, 7] Data for Column: Uid 4 6 8 Data for Column: MyStringColumnInit four six eight Get Data for cols: [1] and between rows: 3 - 7 Data for Column: MyStringColumnInit four five six seven Get Data for cols: [1] and between rows: 3 - 7 with slice Data for Column: MyStringColumnInit four five six seven Query Results for Column: Uid 3 4 5 6 7 8 Query Results for Column: MyStringColumnInit three four five six seven eight Opened table with row-count: 10 New dataset, Id: 607 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0} 1655 added by training_user Tag value: New Tag 1656 added by training_user Creating an OriginalFile and FileAnnotation Attaching FileAnnotation to Dataset: File ID: 1657 , README.txt Size: 15 Annotations on Dataset: New Dataset File ID: 8903 README.txt Size: 15 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ... File downloaded! 1657 README.txt 57 README.txt 1457 README.txt 1557 README.txt 1607 README.txt 107 README.txt 1407 README.txt 1507 README.txt 157 README.txt 7 README.txt Found Annotation with namespace: imperial.training.demo Plane: 0 0 0 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)] [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)] List Datasets: ID: 8 Name: MyDataset ID: 9 Name: MyDataset ID: 10 Name: MyDataset ID: 14 Name: MyDataset ID: 15 Name: MyDataset ID: 16 Name: MyDataset ID: 58 Name: MyDataset ID: 59 Name: MyDataset ID: 60 Name: MyDataset ID: 64 Name: MyDataset ID: 65 Name: MyDataset ID: 66 Name: MyDataset ID: 108 Name: MyDataset ID: 109 Name: MyDataset ID: 110 Name: MyDataset ID: 114 Name: MyDataset ID: 115 Name: MyDataset ID: 116 Name: MyDataset ID: 158 Name: MyDataset ID: 159 Name: MyDataset ID: 160 Name: MyDataset ID: 164 Name: MyDataset ID: 165 Name: MyDataset ID: 166 Name: MyDataset ID: 358 Name: MyDataset ID: 359 Name: MyDataset ID: 360 Name: MyDataset ID: 364 Name: MyDataset ID: 365 Name: MyDataset ID: 366 Name: MyDataset ID: 408 Name: MyDataset ID: 409 Name: MyDataset ID: 410 Name: MyDataset ID: 414 Name: MyDataset ID: 415 Name: MyDataset ID: 416 Name: MyDataset ID: 458 Name: MyDataset ID: 459 Name: MyDataset ID: 460 Name: MyDataset ID: 464 Name: MyDataset ID: 465 Name: MyDataset ID: 466 Name: MyDataset ID: 508 Name: MyDataset ID: 509 Name: MyDataset ID: 510 Name: MyDataset ID: 514 Name: MyDataset ID: 515 Name: MyDataset ID: 516 Name: MyDataset ID: 558 Name: MyDataset ID: 559 Name: MyDataset ID: 560 Name: MyDataset ID: 564 Name: MyDataset ID: 565 Name: MyDataset ID: 566 Name: MyDataset ID: 608 Name: MyDataset ID: 609 Name: MyDataset ID: 610 Name: MyDataset List Tags: ID: 8 Text: MyTag Desc: MyTag 0 ID: 9 Text: MyTag Desc: MyTag 1 ID: 10 Text: MyTag Desc: MyTag 2 ID: 16 Text: MyTag Desc: MyTag 0 ID: 17 Text: MyTag Desc: MyTag 1 ID: 18 Text: MyTag Desc: MyTag 2 ID: 58 Text: MyTag Desc: MyTag 0 ID: 59 Text: MyTag Desc: MyTag 1 ID: 60 Text: MyTag Desc: MyTag 2 ID: 66 Text: MyTag Desc: MyTag 0 ID: 67 Text: MyTag Desc: MyTag 1 ID: 68 Text: MyTag Desc: MyTag 2 ID: 108 Text: MyTag Desc: MyTag 0 ID: 109 Text: MyTag Desc: MyTag 1 ID: 110 Text: MyTag Desc: MyTag 2 ID: 116 Text: MyTag Desc: MyTag 0 ID: 117 Text: MyTag Desc: MyTag 1 ID: 118 Text: MyTag Desc: MyTag 2 ID: 158 Text: MyTag Desc: MyTag 0 ID: 159 Text: MyTag Desc: MyTag 1 ID: 160 Text: MyTag Desc: MyTag 2 ID: 166 Text: MyTag Desc: MyTag 0 ID: 167 Text: MyTag Desc: MyTag 1 ID: 168 Text: MyTag Desc: MyTag 2 ID: 1408 Text: MyTag Desc: MyTag 0 ID: 1409 Text: MyTag Desc: MyTag 1 ID: 1410 Text: MyTag Desc: MyTag 2 ID: 1416 Text: MyTag Desc: MyTag 0 ID: 1417 Text: MyTag Desc: MyTag 1 ID: 1418 Text: MyTag Desc: MyTag 2 ID: 1458 Text: MyTag Desc: MyTag 0 ID: 1459 Text: MyTag Desc: MyTag 1 ID: 1460 Text: MyTag Desc: MyTag 2 ID: 1466 Text: MyTag Desc: MyTag 0 ID: 1467 Text: MyTag Desc: MyTag 1 ID: 1468 Text: MyTag Desc: MyTag 2 ID: 1508 Text: MyTag Desc: MyTag 0 ID: 1509 Text: MyTag Desc: MyTag 1 ID: 1510 Text: MyTag Desc: MyTag 2 ID: 1516 Text: MyTag Desc: MyTag 0 ID: 1517 Text: MyTag Desc: MyTag 1 ID: 1518 Text: MyTag Desc: MyTag 2 ID: 1558 Text: MyTag Desc: MyTag 0 ID: 1559 Text: MyTag Desc: MyTag 1 ID: 1560 Text: MyTag Desc: MyTag 2 ID: 1566 Text: MyTag Desc: MyTag 0 ID: 1567 Text: MyTag Desc: MyTag 1 ID: 1568 Text: MyTag Desc: MyTag 2 ID: 1608 Text: MyTag Desc: MyTag 0 ID: 1609 Text: MyTag Desc: MyTag 1 ID: 1610 Text: MyTag Desc: MyTag 2 ID: 1616 Text: MyTag Desc: MyTag 0 ID: 1617 Text: MyTag Desc: MyTag 1 ID: 1618 Text: MyTag Desc: MyTag 2 ID: 1658 Text: MyTag Desc: MyTag 0 ID: 1659 Text: MyTag Desc: MyTag 1 ID: 1660 Text: MyTag Desc: MyTag 2 New dataset, Id: 611 New dataset 2, Id: 612 test&sizeT=10&sizeZ=5&sizeC=3.fake Tile at zct tile: 2.5 0 0 (5, 5, 100, 100) [[ 0 0 0 ... 102 103 104] [ 0 0 0 ... 102 103 104] [ 0 0 0 ... 102 103 104] ... [ 5 6 7 ... 102 103 104] [ 5 6 7 ... 102 103 104] [ 5 6 7 ... 102 103 104]] shape: (100, 100) min: 0 max: 104 pixel type: uint8 Average : 53.9125 Getting data for T, tile: 0 (256.0, 0, 10, 512) Getting data for T, tile: 1 (256.0, 0, 10, 512) Getting data for T, tile: 2 (256.0, 0, 10, 512) Getting data for T, tile: 3 (256.0, 0, 10, 512) Getting data for T, tile: 4 (256.0, 0, 10, 512) Getting data for T, tile: 5 (256.0, 0, 10, 512) Getting data for T, tile: 6 (256.0, 0, 10, 512) Getting data for T, tile: 7 (256.0, 0, 10, 512) Getting data for T, tile: 8 (256.0, 0, 10, 512) Getting data for T, tile: 9 (256.0, 0, 10, 512) kymograph_data (512, 100) Attaching kymograph.png to image test&sizeT=10&sizeZ=5&sizeC=3.fake Tile at zct tile: 2.5 0 0 (5, 5, 100, 100) [[ 0 0 0 ... 102 103 104] [ 0 0 0 ... 102 103 104] [ 0 0 0 ... 102 103 104] ... [ 5 6 7 ... 102 103 104] [ 5 6 7 ... 102 103 104] [ 5 6 7 ... 102 103 104]] shape: (100, 100) min: 0 max: 104 pixel type: uint8 Average : 53.9125 Getting data for T, tile: 0 (256.0, 0, 10, 512) Getting data for T, tile: 1 (256.0, 0, 10, 512) Getting data for T, tile: 2 (256.0, 0, 10, 512) Getting data for T, tile: 3 (256.0, 0, 10, 512) Getting data for T, tile: 4 (256.0, 0, 10, 512) Getting data for T, tile: 5 (256.0, 0, 10, 512) Getting data for T, tile: 6 (256.0, 0, 10, 512) Getting data for T, tile: 7 (256.0, 0, 10, 512) Getting data for T, tile: 8 (256.0, 0, 10, 512) Getting data for T, tile: 9 (256.0, 0, 10, 512) kymograph_data (512, 100) Attaching kymograph.png to image No file downloaded. Project not rated. New image, Id: 2812 Starting at: http://nginx/web/api/ CSRF token q9LqVfcNB1Pf6PqrwsJf3LIF7gD6Ha6D9UwOuLn9bUOiMa0PD0qTBIqAJJUjDPNm Servers: -id: 1 name: omero host: omero port: 4064 -id: 2 name: testintegration host: testintegration port: 14064 eventContext {'sessionId': 2462, 'sessionUuid': 'f622b3b2-6896-44df-ba00-5135005e30a2', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []} Projects: 2 Project 0 3 Project 0 Created Project: 556 API TEST foo {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 556, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/556/datasets/'}} !! 03/27/24 14:37:40.045 error: communicator not destroyed during global destruction.+ deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + '[' -n /bin/bash -o -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + '[' '!' '' = nondestructive ']' + unset -f deactivate + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup omero.cmd.Delete2Response@44e3760b omero.cmd.Delete2Response@68d6972f one [class java.lang.String] 1.0 [class java.lang.Double] two [class java.lang.String] 2.0 [class java.lang.Double] three [class java.lang.String] 3.0 [class java.lang.Double] -1.0 0 1 2 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 4 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 5 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 6 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 7 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 8 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 9 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 10 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 11 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 12 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 13 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 14 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 15 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 16 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 17 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 18 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 19 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 20 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 21 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 22 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 23 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 24 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 25 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 26 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 27 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 28 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 29 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 30 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 31 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 32 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 33 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 34 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 35 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 36 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 37 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 38 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 39 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 40 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 41 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 42 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 43 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 44 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 45 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 46 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 47 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 48 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 49 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 50 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 51 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 52 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 53 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 54 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 55 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|]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 248 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 249 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 250 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 251 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 252 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 253 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 254 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 255 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 Project:351 Project 1 dataset:418 new Name 2 dataset:401 Dataset 1-1 dataset:402 Dataset 1-2 dataset:407 New Dataset dataset:417 new Name 1 Project:102 Project 0 Project:501 Project 1 dataset:551 Dataset 1-1 dataset:557 New Dataset dataset:568 new Name 2 dataset:552 Dataset 1-2 dataset:567 new Name 1 Project:352 Project 0 Project:52 Project 0 Project:2 Project 0 Project:502 Project 0 Project:551 Project 1 dataset:607 New Dataset dataset:601 Dataset 1-1 dataset:602 Dataset 1-2 Project:301 Project 1 dataset:351 Dataset 1-1 dataset:368 new Name 2 dataset:357 New Dataset dataset:352 Dataset 1-2 dataset:367 new Name 1 Project:302 Project 0 Project:151 Project 1 dataset:152 Dataset 1-2 dataset:168 new Name 2 dataset:167 new Name 1 dataset:157 New Dataset dataset:151 Dataset 1-1 Project:402 Project 0 Project:51 Project 1 dataset:67 new Name 1 dataset:68 new Name 2 dataset:52 Dataset 1-2 dataset:57 New Dataset dataset:51 Dataset 1-1 Project:101 Project 1 dataset:117 new Name 1 dataset:107 New Dataset dataset:101 Dataset 1-1 dataset:118 new Name 2 dataset:102 Dataset 1-2 Project:401 Project 1 dataset:457 New Dataset dataset:467 new Name 1 dataset:451 Dataset 1-1 dataset:452 Dataset 1-2 dataset:468 new Name 2 Project:1 Project 1 dataset:18 new Name 2 dataset:17 new Name 1 dataset:7 New Dataset dataset:2 Dataset 1-2 dataset:1 Dataset 1-1 Project:552 Project 0 Project:152 Project 0 Project:452 Project 0 Project:451 Project 1 dataset:518 new Name 2 dataset:502 Dataset 1-2 dataset:501 Dataset 1-1 dataset:507 New Dataset dataset:517 new Name 1 image:2813 newImageFrom2803 image:2802 test.fake image:2812 New Image 5 10 3 512 512 screen:152 Screen screen:51 Screen plate:52 Plate Name 0 plate:51 Plate screen:301 Screen plate:402 Plate Name 0 plate:401 Plate screen:302 Screen screen:402 Screen screen:2 Screen screen:451 Screen plate:551 Plate plate:552 Plate Name 0 screen:401 Screen plate:501 Plate plate:502 Plate Name 0 screen:352 Screen screen:202 Screen screen:351 Screen plate:452 Plate Name 0 plate:451 Plate screen:452 Screen screen:52 Screen screen:1 Screen plate:2 Plate Name 0 plate:1 Plate screen:102 Screen screen:251 Screen plate:352 Plate Name 0 plate:351 Plate screen:151 Screen plate:151 Plate plate:152 Plate Name 0 screen:201 Screen plate:302 Plate Name 0 plate:301 Plate screen:252 Screen screen:101 Screen plate:102 Plate Name 0 plate:101 Plate well:651 well:652 well:653 plate:101 plate:102 plate:3 plate:301 plate:351 plate:451 plate:353 plate:552 plate:452 plate:551 plate:403 plate:453 plate:103 plate:303 plate:503 plate:553 plate:153 plate:402 plate:53 plate:151 plate:302 plate:502 plate:401 plate:501 plate:1 plate:2 plate:152 plate:352 plate:51 plate:52 List Datasets: ID: 8 Name: MyDataset ID: 9 Name: MyDataset ID: 10 Name: MyDataset ID: 14 Name: MyDataset ID: 15 Name: MyDataset ID: 16 Name: MyDataset ID: 58 Name: MyDataset ID: 59 Name: MyDataset ID: 60 Name: MyDataset ID: 64 Name: MyDataset List Tags: ID: 16 NS: omero.training.demo ID: 17 NS: omero.training.demo ID: 18 NS: omero.training.demo ID: 66 NS: omero.training.demo ID: 67 NS: omero.training.demo ID: 68 NS: omero.training.demo ID: 116 NS: omero.training.demo ID: 117 NS: omero.training.demo ID: 118 NS: omero.training.demo ID: 166 NS: omero.training.demo Dataset:454 Orphaned dataset 2 Dataset:164 MyDataset Dataset:58 MyDataset Dataset:108 MyDataset Dataset:16 MyDataset Dataset:115 MyDataset Dataset:162 New Dataset2 Dataset:613 FileAnnotationDelete Dataset:64 MyDataset Dataset:510 MyDataset Dataset:60 MyDataset Dataset:465 MyDataset Dataset:11 New Dataset Dataset:158 MyDataset Dataset:361 New Dataset Dataset:503 Orphaned dataset 1 Dataset:113 FileAnnotationDelete Dataset:65 MyDataset Project:301 Project 1 Dataset:458 MyDataset Dataset:462 New Dataset2 Dataset:511 New Dataset Dataset:360 MyDataset Dataset:15 MyDataset Dataset:610 MyDataset Dataset:63 FileAnnotationDelete Dataset:3 Orphaned dataset 1 Dataset:10 MyDataset Dataset:453 Orphaned dataset 1 Dataset:4 Orphaned dataset 2 Dataset:111 New Dataset Dataset:461 New Dataset Dataset:611 New Dataset Dataset:603 Orphaned dataset 1 Dataset:411 New Dataset Dataset:408 MyDataset Dataset:354 Orphaned dataset 2 Dataset:363 FileAnnotationDelete Project:1 Project 1 Project:551 Project 1 Dataset:562 New Dataset2 Dataset:412 New Dataset2 Dataset:554 Orphaned dataset 2 Dataset:566 MyDataset Dataset:514 MyDataset Dataset:103 Orphaned dataset 1 Project:401 Project 1 Dataset:512 New Dataset2 Dataset:413 FileAnnotationDelete Dataset:460 MyDataset Dataset:404 Orphaned dataset 2 Dataset:513 FileAnnotationDelete Dataset:516 MyDataset Dataset:563 FileAnnotationDelete Dataset:366 MyDataset Dataset:53 Orphaned dataset 1 Dataset:104 Orphaned dataset 2 Dataset:508 MyDataset Dataset:608 MyDataset Project:151 Project 1 Dataset:353 Orphaned dataset 1 Project:501 Project 1 Dataset:59 MyDataset Dataset:110 MyDataset Dataset:463 FileAnnotationDelete Dataset:564 MyDataset Dataset:12 New Dataset2 Dataset:614 MyDataset Dataset:414 MyDataset Dataset:112 New Dataset2 Dataset:61 New Dataset Dataset:14 MyDataset Project:101 Project 1 Dataset:403 Orphaned dataset 1 Dataset:165 MyDataset Dataset:160 MyDataset Dataset:362 New Dataset2 Dataset:161 New Dataset Dataset:114 MyDataset Project:451 Project 1 Dataset:8 MyDataset Dataset:559 MyDataset Dataset:410 MyDataset Dataset:364 MyDataset Dataset:560 MyDataset Dataset:365 MyDataset Dataset:163 FileAnnotationDelete Dataset:359 MyDataset Dataset:459 MyDataset Dataset:604 Orphaned dataset 2 Dataset:54 Orphaned dataset 2 Dataset:466 MyDataset Project:51 Project 1 Dataset:116 MyDataset Dataset:553 Orphaned dataset 1 Dataset:416 MyDataset Dataset:9 MyDataset Dataset:66 MyDataset Dataset:609 MyDataset Dataset:504 Orphaned dataset 2 Project:351 Project 1 Dataset:612 New Dataset2 Dataset:464 MyDataset Dataset:153 Orphaned dataset 1 Dataset:415 MyDataset Dataset:62 New Dataset2 Dataset:154 Orphaned dataset 2 Dataset:561 New Dataset Dataset:358 MyDataset Dataset:166 MyDataset Dataset:565 MyDataset Dataset:615 MyDataset Dataset:159 MyDataset Dataset:558 MyDataset Dataset:409 MyDataset Dataset:515 MyDataset Dataset:109 MyDataset Dataset:509 MyDataset Dataset:13 FileAnnotationDelete Dataset:616 MyDataset Size:0 512 512 9 9 1 Logged in as ladmin_user Added 'training_user's tag' to dataset MyDataset on behalf of training_user Added 'ladmin_user's tag' to dataset MyDataset as admin. Finished: SUCCESS