Started by upstream project "Trigger" build number 18
originally caused by:
 Started by timer
Running as SYSTEM
Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
[OMERO-training] $ /bin/bash -xe /tmp/jenkins1146169428463221065.sh
+ rm -rf /home/omero/workspace/OMERO-training/.venv3
+ python3 -m venv /home/omero/workspace/OMERO-training/.venv3
+ source /home/omero/workspace/OMERO-training/.venv3/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(.venv3) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
Collecting zeroc-ice==3.6.5
  Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
Installing collected packages: zeroc-ice
Successfully installed zeroc-ice-3.6.5
WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
You should consider upgrading via the '/home/omero/workspace/OMERO-training/.venv3/bin/python3 -m pip install --upgrade pip' command.
+ pip install -U pip future setuptools
Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Collecting future
  Using cached future-1.0.0-py3-none-any.whl (491 kB)
Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0)
Collecting setuptools
  Using cached setuptools-69.2.0-py3-none-any.whl (821 kB)
Installing collected packages: setuptools, pip, future
  Attempting uninstall: setuptools
    Found existing installation: setuptools 53.0.0
    Uninstalling setuptools-53.0.0:
      Successfully uninstalled setuptools-53.0.0
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed future-1.0.0 pip-24.0 setuptools-69.2.0
+ pip install markdown
Collecting markdown
  Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
Collecting importlib-metadata>=4.4 (from markdown)
  Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
  Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
Using cached Markdown-3.6-py3-none-any.whl (105 kB)
Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
Installing collected packages: zipp, importlib-metadata, markdown
Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
+ pip install mox3 pytest 'pytest-xdist<2'
Collecting mox3
  Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pytest
  Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-xdist<2
  Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
  Using cached pbr-6.0.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting fixtures>=3.0.0 (from mox3)
  Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB)
Collecting iniconfig (from pytest)
  Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
Collecting packaging (from pytest)
  Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pluggy<2.0,>=1.4 (from pytest)
  Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
Collecting exceptiongroup>=1.0.0rc8 (from pytest)
  Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB)
Collecting tomli>=1 (from pytest)
  Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
Collecting execnet>=1.1 (from pytest-xdist<2)
  Using cached execnet-2.0.2-py3-none-any.whl.metadata (2.9 kB)
Collecting pytest-forked (from pytest-xdist<2)
  Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
Collecting six (from pytest-xdist<2)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting py (from pytest-forked->pytest-xdist<2)
  Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
Using cached pytest-8.1.1-py3-none-any.whl (337 kB)
Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB)
Using cached execnet-2.0.2-py3-none-any.whl (37 kB)
Using cached fixtures-4.1.0-py3-none-any.whl (64 kB)
Using cached pbr-6.0.0-py2.py3-none-any.whl (107 kB)
Using cached pluggy-1.4.0-py3-none-any.whl (20 kB)
Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Using cached packaging-24.0-py3-none-any.whl (53 kB)
Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
Installing collected packages: tomli, six, py, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-forked, mox3, pytest-xdist
Successfully installed exceptiongroup-1.2.0 execnet-2.0.2 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.0 pbr-6.0.0 pluggy-1.4.0 py-1.11.0 pytest-8.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.16.0 tomli-2.0.1
+ pip install tables
Collecting tables
  Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
Collecting numpy>=1.19.0 (from tables)
  Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
Collecting numexpr>=2.6.2 (from tables)
  Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.0)
Collecting py-cpuinfo (from tables)
  Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
Collecting blosc2>=2.3.0 (from tables)
  Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
  Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
Collecting msgpack (from blosc2>=2.3.0->tables)
  Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB)
Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
Using cached ndindex-1.8-py3-none-any.whl (91 kB)
Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
Installing collected packages: py-cpuinfo, numpy, ndindex, msgpack, numexpr, blosc2, tables
Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 py-cpuinfo-9.0.0 tables-3.9.2
+ pip install jinja2
Collecting jinja2
  Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
Collecting MarkupSafe>=2.0 (from jinja2)
  Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
Installing collected packages: MarkupSafe, jinja2
Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
+ rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-py-5.19.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
Copied 5 artifacts from "OMERO-python-superbuild-build" build number 15
Copied 2 artifacts from "OMERO-build" build number 15
Copied 2 artifacts from "OMERO-build-build" build number 15
[OMERO-training] $ /bin/bash -xe /tmp/jenkins14150084481682913222.sh
+ source /home/settings.env
++ OMERO_DB_HOST=pg
++ OMERO_DB_USER=postgres
++ OMERO_DB_PASS=
++ OMERO_ROOT_PASS=omero
++ OMERO_DATA_DIR=/OMERO
++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
+ export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
+ ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
+ export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
+ VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
+ OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
++ ls openmicroscopy-5.6.3-437-107a04d9e5-ice36.zip
+ ZIP=openmicroscopy-5.6.3-437-107a04d9e5-ice36.zip
+ DIST=openmicroscopy-5.6.3-437-107a04d9e5-ice36
+ unzip -n openmicroscopy-5.6.3-437-107a04d9e5-ice36.zip
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql  
   creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__2/
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql  
   creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__5/
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__4/OMERO3__1.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__5/OMERO3__4.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__6/OMERO3__5.sql  
   creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__7/
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__7/OMERO3__6.sql  
   creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.1__0/
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql  
   creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
   creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
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  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/psql-footer.sql  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/psql-header.sql  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/schema.sql  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/views.sql  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/test.xml  
  inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/update_dependencies.sh  
 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/resources/gitversion.xml  
 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake  
+ rm -f openmicroscopy-5.6.3-437-107a04d9e5-ice36.zip
+ mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-437-107a04d9e5-ice36 /home/omero/workspace/OMERO-training/openmicroscopy
+ export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
+ OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
++ ls OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
+ ZIP=OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
+ DIST=OMERO.server-5.6.3-437-107a04d9e5-ice36
+ unzip -n OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
Archive:  OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
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   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/grid/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/profiles/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/error/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/
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   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/luts/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/luts/janelia/
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   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/analysis_scripts/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/annotation_scripts/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/export_scripts/
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   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/import_scripts/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/util_scripts/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/server/
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   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/share/licenses/
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   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/misc/
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   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/
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   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/
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   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__1/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__2/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__3/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/
   creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/var/
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/LICENSE.txt  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/backup.cfg  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/blitz/mail-senders.example  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/blitz/mail-server.example  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/build.properties  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/env.bat  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/env.sh  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/hibernate.properties  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/ice.config  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/logback-cli.xml  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/logback-indexing-cli.xml  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/logback-indexing.xml  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/logback.xml  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/mime.types  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/node1.cfg  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/node2.cfg  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/omero.properties  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/profiles/psql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/rollover.cfg  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/Windows.cfg  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/error/maintainance.html  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/README  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/default.xml  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/templates.xml  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/windefault.xml  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/ice.config  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/internal.cfg  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/master.cfg  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/robot.template  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/testdropbox.config  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/history.rst  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/OMEZarrReader.jar  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/activation.jar  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/aggdesigner-algorithm.jar  
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  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__4/OMERO3__1.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__5/OMERO3__4.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__6/OMERO3__5.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__7/OMERO3__6.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/psql-footer.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/psql-header.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/schema.sql  
  inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/views.sql  
+ rm -f OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
+ mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-437-107a04d9e5-ice36 /home/omero/workspace/OMERO-training/OMERO.server
+ source /home/omero/workspace/OMERO-training/.venv3/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(.venv3) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ for x in *.gz
+ pip install omero-dropbox-5.6.3.dev0.tar.gz
Processing ./omero-dropbox-5.6.3.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting omero-py (from omero-dropbox==5.6.3.dev0)
  Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB)
Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
  Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
  Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
  Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB)
Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
Using cached requests-2.31.0-py3-none-any.whl (62 kB)
Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached idna-3.6-py3-none-any.whl (61 kB)
Building wheels for collected packages: omero-dropbox
  Building wheel for omero-dropbox (pyproject.toml): started
  Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
  Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=ee2cbc4a541c572b904a0bc30d718ec7bd9a6f1bc2ec405884c4681edf75497a
  Stored in directory: /home/omero/.cache/pip/wheels/70/da/3d/331719007048e84a6ccfa834fcb865d58e6f5e47143b222b43
Successfully built omero-dropbox
Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox
Successfully installed Pillow-10.2.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-dropbox-5.6.3.dev0 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
+ for x in *.gz
+ pip install omero_marshal-0.9.1.dev0.tar.gz
Processing ./omero_marshal-0.9.1.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: omero_marshal
  Building wheel for omero_marshal (pyproject.toml): started
  Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
  Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=dcedfe4aaae4d40b49230f42a40b7826bf34d1409f0fa8f4660e4fd81cebb62e
  Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35
Successfully built omero_marshal
Installing collected packages: omero_marshal
Successfully installed omero_marshal-0.9.1.dev0
+ for x in *.gz
+ pip install omero-py-5.19.2.dev0.tar.gz
Processing ./omero-py-5.19.2.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0)
Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.2.0)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.6)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2)
Building wheels for collected packages: omero-py
  Building wheel for omero-py (pyproject.toml): started
  Building wheel for omero-py (pyproject.toml): finished with status 'done'
  Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2782017 sha256=2257923a2a41bef9c86e1380880cf35da7bd4af3a4933741f5469d6dac5551c1
  Stored in directory: /home/omero/.cache/pip/wheels/9f/8a/96/ff4bfe740f086274aebfc36457d9e011becbee746485593d12
Successfully built omero-py
Installing collected packages: omero-py
  Attempting uninstall: omero-py
    Found existing installation: omero-py 5.19.1
    Uninstalling omero-py-5.19.1:
      Successfully uninstalled omero-py-5.19.1
Successfully installed omero-py-5.19.2.dev0
+ for x in *.gz
+ pip install omero-scripts-5.8.1.dev0.tar.gz
Processing ./omero-scripts-5.8.1.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: omero-scripts
  Building wheel for omero-scripts (pyproject.toml): started
  Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
  Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=18516c6873b7267f6eeb7502d1dbee1558de2a8a4d9e65d6d5ee75ac8f0ee9ff
  Stored in directory: /home/omero/.cache/pip/wheels/bf/20/bf/f0e89c5f6fcd6f4ff1c089bc6b449e017b94b2f6b6c2593196
Successfully built omero-scripts
Installing collected packages: omero-scripts
Successfully installed omero-scripts-5.8.1.dev0
+ for x in *.gz
+ pip install omero-web-5.25.1.dev0.tar.gz
Processing ./omero-web-5.25.1.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0)
Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
  Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
  Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
  Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
  Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
Collecting django-csp (from omero-web==5.25.1.dev0)
  Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
  Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
  Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
Collecting pytz (from omero-web==5.25.1.dev0)
  Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
  Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
  Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
  Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
Using cached django_csp-3.8-py3-none-any.whl (17 kB)
Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
Building wheels for collected packages: omero-web
  Building wheel for omero-web (pyproject.toml): started
  Building wheel for omero-web (pyproject.toml): finished with status 'done'
  Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=b05653aef98fce941e28cbe520eeace2fa7be50a005b71de9448ca5f63052024
  Stored in directory: /home/omero/.cache/pip/wheels/27/e6/a8/3c62891eccbd4759036a66343d82d7ebc8ff45e9a0976cd8c7
Successfully built omero-web
Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
+ cd /home/omero/workspace/OMERO-training/OMERO.server
+ bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
+ HOSTNAME=d6309de3f85a
+ PORT=4064
+ WEBHOST=http://nginx/web
+ SERVER_NAME=omero
+ ROOT_PASSWORD=omero
+ GROUP_NAME=training_group
+ GROUP_NAME_2=training_group-2
+ USER_NAME=training_user
+ USER_NAME_2=training_user-2
+ LIGHTADMIN_USER_NAME=ladmin_user
+ USER_PASSWORD=ome
+ CONFIG_FILENAME=training_ice.config
+ omero login root@d6309de3f85a:4064 -w omero
Created session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
+ omero group add training_group --type read-only --ignore-existing
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
Group exists: training_group (id=3)
+ omero group add training_group-2 --type read-only --ignore-existing
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
Group exists: training_group-2 (id=4)
+ omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
User exists: training_user (id=2)
+ omero user joingroup --name training_user --group-name training_group training_group-2
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
2 is already in group 3
2 is already in group 4
+ omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
User exists: training_user-2 (id=3)
+ omero user joingroup --name training_user-2 --group-name training_group training_group-2
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
3 is already in group 3
3 is already in group 4
+ omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
User exists: ladmin_user (id=4)
+ omero user joingroup --name ladmin_user --group-name training_group training_group-2
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
4 is already in group 3
4 is already in group 4
++ omero user info ladmin_user --style plain
++ cut -d, -f1
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
+ id=4
+ omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
Experimenter:4
+ omero logout
+ touch test.fake
+ omero login training_user@d6309de3f85a:4064 -w ome -g training_group
Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
+ nProjects=1
+ nDatasets=2
+ echo 'Creating projects and datasets'
Creating projects and datasets
+ (( i=1 ))
+ (( i<=1 ))
++ omero obj new Project 'name=Project 1'
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
+ project=Project:601
+ (( j=1 ))
+ (( j<=2 ))
++ omero obj new Dataset 'name=Dataset 1-1'
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
+ dataset=Dataset:651
+ omero obj new ProjectDatasetLink parent=Project:601 child=Dataset:651
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
ProjectDatasetLink:601
+ echo 'Importing image into dataset'
Importing image into dataset
+ omero import -d Dataset:651 test.fake --debug ERROR
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
2024-03-28 00:59:46,691 248        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-03-28 00:59:46,706 263        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 557e9664b3df8ff628453442d6ed95dc89332a56 date: 28 March 2024
Image:2851
Other imported objects:
Fileset:2201

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.006
+ (( j++  ))
+ (( j<=2 ))
++ omero obj new Dataset 'name=Dataset 1-2'
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
+ dataset=Dataset:652
+ omero obj new ProjectDatasetLink parent=Project:601 child=Dataset:652
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
ProjectDatasetLink:602
+ echo 'Importing image into dataset'
Importing image into dataset
+ omero import -d Dataset:652 test.fake --debug ERROR
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
2024-03-28 00:59:53,364 259        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-03-28 00:59:53,381 276        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 557e9664b3df8ff628453442d6ed95dc89332a56 date: 28 March 2024
Image:2852
Other imported objects:
Fileset:2202

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.197
+ (( j++  ))
+ (( j<=2 ))
+ (( i++  ))
+ (( i<=1 ))
+ (( j=1 ))
+ (( j<=2 ))
+ omero obj new Dataset 'name=Orphaned dataset 1'
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
Dataset:653
+ (( j++  ))
+ (( j<=2 ))
+ omero obj new Dataset 'name=Orphaned dataset 2'
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
Dataset:654
+ (( j++  ))
+ (( j<=2 ))
+ echo 'Importing image file'
Importing image file
+ touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
+ omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
++ sed -n -e 's/^Image://p' image_import.log
+ imageid=2853
++ omero obj new MapAnnotation
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
+ MAP=MapAnnotation:1901
+ omero obj map-set MapAnnotation:1901 mapValue testkey testvalue
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
MapAnnotation:1901
+ omero obj new ImageAnnotationLink parent=Image:2853 child=MapAnnotation:1901
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
ImageAnnotationLink:901
++ omero obj new Screen name=Screen
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
+ screen=Screen:501
++ omero obj new Plate name=Plate
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
+ plate=Plate:601
+ omero obj new ScreenPlateLink parent=Screen:501 child=Plate:601
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
ScreenPlateLink:501
+ echo 'Importing SPW file'
Importing SPW file
+ touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
+ omero import -r Screen:501 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
++ sed -n -e 's/^Plate://p' plate_import.log
+ plateid=602
+ omero logout
+ omero login training_user-2@d6309de3f85a:4064 -w ome -g training_group
Created session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
+ omero obj new Project 'name=Project 0'
Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
Project:602
+ omero obj new Dataset 'name=Dataset 0'
Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
Dataset:655
+ omero import test.fake --debug ERROR
Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
2024-03-28 01:00:18,939 247        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-03-28 01:00:18,954 262        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 557e9664b3df8ff628453442d6ed95dc89332a56 date: 28 March 2024
Image:2857
Other imported objects:
Fileset:2205

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.774
+ omero obj new Screen name=Screen
Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
Screen:502
+ omero obj new Plate name=Plate
Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
Plate:603
+ omero login training_user@d6309de3f85a:4064 -w ome -g training_group-2
Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
+ omero obj new Project 'name=Project 0'
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
Project:603
+ omero obj new Dataset 'name=Dataset 0'
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
Dataset:656
+ omero import test.fake --debug ERROR
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
2024-03-28 01:00:26,721 257        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-03-28 01:00:26,736 272        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 557e9664b3df8ff628453442d6ed95dc89332a56 date: 28 March 2024
Image:2858
Other imported objects:
Fileset:2206

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.803
+ omero obj new Screen name=Screen
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
Screen:503
+ omero obj new Plate name=Plate
Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
Plate:604
+ omero logout
+ echo omero.host=d6309de3f85a
+ echo omero.port=4064
+ echo omero.webhost=http://nginx/web
+ echo omero.servername=omero
+ echo omero.user=training_user
+ echo omero.pass=ome
+ echo omero.group=training_group
+ echo omero.projectid=601
+ echo omero.datasetid=652
+ echo omero.imageid=2853
+ echo omero.plateid=602
+ echo omero.screenid=501
+ echo omero.group2=training_group-2
+ echo omero.ladmin=ladmin_user
+ rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
+ mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
+ omero sessions clear
1 session(s) cleared
!! 03/28/24 01:00:32.370 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
+ ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
+ pip install --upgrade requests
Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0)
Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.6)
Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18)
Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2)
+ python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
Running training suite
created 20 shapes
retrieved 20 shapes in 4 batches
Current user:
   ID: 2
   Username: training_user
   Full Name: training_user training_user
   Is Admin: False
[]
Member of:
   ID: 3  Name: training_group
   ID: 4  Name: training_group-2
Current group:  training_group
   Group owners:
   Group members:
     ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
     ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
     ID: 2 UserName: training_user Name: training_user training_user
Owner of:
Admins:
   ID: 0 UserName: root Name: root root
   ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
   ID: 107 UserName: <hidden> Name: <hidden> <hidden>
   ID: 119 UserName: <hidden> Name: <hidden> <hidden>
   ID: 113 UserName: <hidden> Name: <hidden> <hidden>
Created new Image:2859 Name:"numpy image"
newPlane for z,t: 0 0 uint8 0 127
newPlane for z,t: 0 1 uint8 0 127
newPlane for z,t: 0 2 uint8 0 127
newPlane for z,t: 0 3 uint8 0 127
newPlane for z,t: 0 4 uint8 0 127
newPlane for z,t: 0 5 uint8 0 127
newPlane for z,t: 0 6 uint8 0 127
newPlane for z,t: 0 7 uint8 0 127
newPlane for z,t: 0 8 uint8 0 127
newPlane for z,t: 0 9 uint8 0 127
newPlane for z,t: 1 0 uint8 0 127
newPlane for z,t: 1 1 uint8 0 127
newPlane for z,t: 1 2 uint8 0 127
newPlane for z,t: 1 3 uint8 0 127
newPlane for z,t: 1 4 uint8 0 127
newPlane for z,t: 1 5 uint8 0 127
newPlane for z,t: 1 6 uint8 0 127
newPlane for z,t: 1 7 uint8 0 127
newPlane for z,t: 1 8 uint8 0 127
newPlane for z,t: 1 9 uint8 0 127
newPlane for z,t: 2 0 uint8 0 127
newPlane for z,t: 2 1 uint8 0 127
newPlane for z,t: 2 2 uint8 0 127
newPlane for z,t: 2 3 uint8 0 127
newPlane for z,t: 2 4 uint8 0 127
newPlane for z,t: 2 5 uint8 0 127
newPlane for z,t: 2 6 uint8 0 127
newPlane for z,t: 2 7 uint8 0 127
newPlane for z,t: 2 8 uint8 0 127
newPlane for z,t: 2 9 uint8 0 127
newPlane for z,t: 3 0 uint8 0 127
newPlane for z,t: 3 1 uint8 0 127
newPlane for z,t: 3 2 uint8 0 127
newPlane for z,t: 3 3 uint8 0 127
newPlane for z,t: 3 4 uint8 0 127
newPlane for z,t: 3 5 uint8 0 127
newPlane for z,t: 3 6 uint8 0 127
newPlane for z,t: 3 7 uint8 0 127
newPlane for z,t: 3 8 uint8 0 127
newPlane for z,t: 3 9 uint8 0 127
newPlane for z,t: 4 0 uint8 0 127
newPlane for z,t: 4 1 uint8 0 127
newPlane for z,t: 4 2 uint8 0 127
newPlane for z,t: 4 3 uint8 0 127
newPlane for z,t: 4 4 uint8 0 127
newPlane for z,t: 4 5 uint8 0 127
newPlane for z,t: 4 6 uint8 0 127
newPlane for z,t: 4 7 uint8 0 127
newPlane for z,t: 4 8 uint8 0 127
newPlane for z,t: 4 9 uint8 0 127
Deleting, please wait.
Error? False
2853 test&sizeT=10&sizeZ=5&sizeC=3.fake
training_user_2/Blitz-0-Ice.ThreadPool.Server-9/2024-03/28/01-00-00.297/ test&sizeT=10&sizeZ=5&sizeC=3.fake
1
training_user_2/Blitz-0-Ice.ThreadPool.Server-9/2024-03/28/01-00-00.297/ test&sizeT=10&sizeZ=5&sizeC=3.fake
Current group:  training_group
Permissions: READ-ONLY (rwr---)
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Image:  <_ImageWrapper id=2853>
Image:  <_ImageWrapper id=2853> Group:  training_group 3
Image:  <_ImageWrapper id=2853> Channel:  0
Channel:  1
Channel:  2


original_metadata
global_metadata
series_metadata

Plane at zct:  0 0 0
[[  0   0   0 ... 253 254 255]
 [  0   0   0 ... 253 254 255]
 [  0   0   0 ... 253 254 255]
 ...
 [  0   1   2 ... 253 254 255]
 [  0   1   2 ... 253 254 255]
 [  0   1   2 ... 253 254 255]]
shape:  (512, 512)
min: 0  max: 255 pixel type: uint8

Z stack of tiles:
Tile: (0, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (1, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (2, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (3, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (4, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450

Hyper stack of planes:
plane zct: (2, 0, 0)  min: 0  max: 255
plane zct: (2, 0, 1)  min: 0  max: 255
plane zct: (2, 0, 2)  min: 0  max: 255
plane zct: (2, 0, 3)  min: 0  max: 255
plane zct: (2, 0, 4)  min: 0  max: 255
plane zct: (2, 0, 5)  min: 0  max: 255
plane zct: (2, 0, 6)  min: 0  max: 255
plane zct: (2, 0, 7)  min: 0  max: 255
plane zct: (2, 0, 8)  min: 0  max: 255
plane zct: (2, 0, 9)  min: 0  max: 255
plane zct: (2, 1, 0)  min: 0  max: 255
plane zct: (2, 1, 1)  min: 0  max: 255
plane zct: (2, 1, 2)  min: 0  max: 255
plane zct: (2, 1, 3)  min: 0  max: 255
plane zct: (2, 1, 4)  min: 0  max: 255
plane zct: (2, 1, 5)  min: 0  max: 255
plane zct: (2, 1, 6)  min: 0  max: 255
plane zct: (2, 1, 7)  min: 0  max: 255
plane zct: (2, 1, 8)  min: 0  max: 255
plane zct: (2, 1, 9)  min: 0  max: 255
plane zct: (2, 2, 0)  min: 0  max: 255
plane zct: (2, 2, 1)  min: 0  max: 255
plane zct: (2, 2, 2)  min: 0  max: 255
plane zct: (2, 2, 3)  min: 0  max: 255
plane zct: (2, 2, 4)  min: 0  max: 255
plane zct: (2, 2, 5)  min: 0  max: 255
plane zct: (2, 2, 6)  min: 0  max: 255
plane zct: (2, 2, 7)  min: 0  max: 255
plane zct: (2, 2, 8)  min: 0  max: 255
plane zct: (2, 2, 9)  min: 0  max: 255
plane zct: (3, 0, 0)  min: 0  max: 255
plane zct: (3, 0, 1)  min: 0  max: 255
plane zct: (3, 0, 2)  min: 0  max: 255
plane zct: (3, 0, 3)  min: 0  max: 255
plane zct: (3, 0, 4)  min: 0  max: 255
plane zct: (3, 0, 5)  min: 0  max: 255
plane zct: (3, 0, 6)  min: 0  max: 255
plane zct: (3, 0, 7)  min: 0  max: 255
plane zct: (3, 0, 8)  min: 0  max: 255
plane zct: (3, 0, 9)  min: 0  max: 255
plane zct: (3, 1, 0)  min: 0  max: 255
plane zct: (3, 1, 1)  min: 0  max: 255
plane zct: (3, 1, 2)  min: 0  max: 255
plane zct: (3, 1, 3)  min: 0  max: 255
plane zct: (3, 1, 4)  min: 0  max: 255
plane zct: (3, 1, 5)  min: 0  max: 255
plane zct: (3, 1, 6)  min: 0  max: 255
plane zct: (3, 1, 7)  min: 0  max: 255
plane zct: (3, 1, 8)  min: 0  max: 255
plane zct: (3, 1, 9)  min: 0  max: 255
plane zct: (3, 2, 0)  min: 0  max: 255
plane zct: (3, 2, 1)  min: 0  max: 255
plane zct: (3, 2, 2)  min: 0  max: 255
plane zct: (3, 2, 3)  min: 0  max: 255
plane zct: (3, 2, 4)  min: 0  max: 255
plane zct: (3, 2, 5)  min: 0  max: 255
plane zct: (3, 2, 6)  min: 0  max: 255
plane zct: (3, 2, 7)  min: 0  max: 255
plane zct: (3, 2, 8)  min: 0  max: 255
plane zct: (3, 2, 9)  min: 0  max: 255
plane zct: (4, 0, 0)  min: 0  max: 255
plane zct: (4, 0, 1)  min: 0  max: 255
plane zct: (4, 0, 2)  min: 0  max: 255
plane zct: (4, 0, 3)  min: 0  max: 255
plane zct: (4, 0, 4)  min: 0  max: 255
plane zct: (4, 0, 5)  min: 0  max: 255
plane zct: (4, 0, 6)  min: 0  max: 255
plane zct: (4, 0, 7)  min: 0  max: 255
plane zct: (4, 0, 8)  min: 0  max: 255
plane zct: (4, 0, 9)  min: 0  max: 255
plane zct: (4, 1, 0)  min: 0  max: 255
plane zct: (4, 1, 1)  min: 0  max: 255
plane zct: (4, 1, 2)  min: 0  max: 255
plane zct: (4, 1, 3)  min: 0  max: 255
plane zct: (4, 1, 4)  min: 0  max: 255
plane zct: (4, 1, 5)  min: 0  max: 255
plane zct: (4, 1, 6)  min: 0  max: 255
plane zct: (4, 1, 7)  min: 0  max: 255
plane zct: (4, 1, 8)  min: 0  max: 255
plane zct: (4, 1, 9)  min: 0  max: 255
plane zct: (4, 2, 0)  min: 0  max: 255
plane zct: (4, 2, 1)  min: 0  max: 255
plane zct: (4, 2, 2)  min: 0  max: 255
plane zct: (4, 2, 3)  min: 0  max: 255
plane zct: (4, 2, 4)  min: 0  max: 255
plane zct: (4, 2, 5)  min: 0  max: 255
plane zct: (4, 2, 6)  min: 0  max: 255
plane zct: (4, 2, 7)  min: 0  max: 255
plane zct: (4, 2, 8)  min: 0  max: 255
plane zct: (4, 2, 9)  min: 0  max: 255
{0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}

List Projects:
==================================================
Project:1  Name:"Project 1" (owner=training_user)
  Dataset:1  Name:"Dataset 1-1" (owner=training_user)
    Image:1  Name:"test.fake" (owner=training_user)
  Dataset:2  Name:"Dataset 1-2" (owner=training_user)
    Image:12  Name:"New Image" (owner=training_user)
    Image:13  Name:"newImageFrom3" (owner=training_user)
    Image:2  Name:"test.fake" (owner=training_user)
  Dataset:7  Name:"New Dataset" (owner=training_user)
  Dataset:17  Name:"new Name 1" (owner=training_user)
  Dataset:18  Name:"new Name 2" (owner=training_user)
Project:51  Name:"Project 1" (owner=training_user)
  Dataset:51  Name:"Dataset 1-1" (owner=training_user)
    Image:51  Name:"test.fake" (owner=training_user)
  Dataset:52  Name:"Dataset 1-2" (owner=training_user)
    Image:62  Name:"New Image" (owner=training_user)
    Image:63  Name:"newImageFrom53" (owner=training_user)
    Image:52  Name:"test.fake" (owner=training_user)
  Dataset:57  Name:"New Dataset" (owner=training_user)
  Dataset:67  Name:"new Name 1" (owner=training_user)
  Dataset:68  Name:"new Name 2" (owner=training_user)
Project:101  Name:"Project 1" (owner=training_user)
  Dataset:101  Name:"Dataset 1-1" (owner=training_user)
    Image:101  Name:"test.fake" (owner=training_user)
  Dataset:102  Name:"Dataset 1-2" (owner=training_user)
    Image:112  Name:"New Image" (owner=training_user)
    Image:113  Name:"newImageFrom103" (owner=training_user)
    Image:102  Name:"test.fake" (owner=training_user)
  Dataset:107  Name:"New Dataset" (owner=training_user)
  Dataset:117  Name:"new Name 1" (owner=training_user)
  Dataset:118  Name:"new Name 2" (owner=training_user)
Project:151  Name:"Project 1" (owner=training_user)
  Dataset:151  Name:"Dataset 1-1" (owner=training_user)
    Image:151  Name:"test.fake" (owner=training_user)
  Dataset:152  Name:"Dataset 1-2" (owner=training_user)
    Image:162  Name:"New Image" (owner=training_user)
    Image:163  Name:"newImageFrom153" (owner=training_user)
    Image:152  Name:"test.fake" (owner=training_user)
  Dataset:157  Name:"New Dataset" (owner=training_user)
  Dataset:167  Name:"new Name 1" (owner=training_user)
  Dataset:168  Name:"new Name 2" (owner=training_user)
Project:301  Name:"Project 1" (owner=training_user)
  Dataset:351  Name:"Dataset 1-1" (owner=training_user)
    Image:2551  Name:"test.fake" (owner=training_user)
  Dataset:352  Name:"Dataset 1-2" (owner=training_user)
    Image:2562  Name:"New Image" (owner=training_user)
    Image:2563  Name:"newImageFrom2553" (owner=training_user)
    Image:2552  Name:"test.fake" (owner=training_user)
  Dataset:357  Name:"New Dataset" (owner=training_user)
  Dataset:367  Name:"new Name 1" (owner=training_user)
  Dataset:368  Name:"new Name 2" (owner=training_user)

List orphaned Datasets: 
 ==================================================
Dataset:3  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:4  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:5  Name:"Dataset 0" (owner=training_user-2)
Dataset:8  Name:"MyDataset" (owner=training_user)
Dataset:9  Name:"MyDataset" (owner=training_user)
Dataset:10  Name:"MyDataset" (owner=training_user)
Dataset:11  Name:"New Dataset" (owner=training_user)
Dataset:12  Name:"New Dataset2" (owner=training_user)
Dataset:13  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:14  Name:"MyDataset" (owner=training_user)
Dataset:15  Name:"MyDataset" (owner=training_user)
Dataset:16  Name:"MyDataset" (owner=training_user)
Dataset:53  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:54  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:55  Name:"Dataset 0" (owner=training_user-2)
Dataset:58  Name:"MyDataset" (owner=training_user)
Dataset:59  Name:"MyDataset" (owner=training_user)
Dataset:60  Name:"MyDataset" (owner=training_user)
Dataset:61  Name:"New Dataset" (owner=training_user)
Dataset:62  Name:"New Dataset2" (owner=training_user)
Dataset:63  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:64  Name:"MyDataset" (owner=training_user)
Dataset:65  Name:"MyDataset" (owner=training_user)
Dataset:66  Name:"MyDataset" (owner=training_user)
Dataset:103  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:104  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:105  Name:"Dataset 0" (owner=training_user-2)
Dataset:108  Name:"MyDataset" (owner=training_user)
Dataset:109  Name:"MyDataset" (owner=training_user)
Dataset:110  Name:"MyDataset" (owner=training_user)
Dataset:111  Name:"New Dataset" (owner=training_user)
Dataset:112  Name:"New Dataset2" (owner=training_user)
Dataset:113  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:114  Name:"MyDataset" (owner=training_user)
Dataset:115  Name:"MyDataset" (owner=training_user)
Dataset:116  Name:"MyDataset" (owner=training_user)
Dataset:153  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:154  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:155  Name:"Dataset 0" (owner=training_user-2)
Dataset:158  Name:"MyDataset" (owner=training_user)
Dataset:159  Name:"MyDataset" (owner=training_user)
Dataset:160  Name:"MyDataset" (owner=training_user)
Dataset:161  Name:"New Dataset" (owner=training_user)
Dataset:162  Name:"New Dataset2" (owner=training_user)
Dataset:163  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:164  Name:"MyDataset" (owner=training_user)
Dataset:165  Name:"MyDataset" (owner=training_user)
Dataset:166  Name:"MyDataset" (owner=training_user)
Dataset:353  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:354  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:355  Name:"Dataset 0" (owner=training_user-2)
Dataset:358  Name:"MyDataset" (owner=training_user)
Dataset:359  Name:"MyDataset" (owner=training_user)
Dataset:360  Name:"MyDataset" (owner=training_user)
Dataset:361  Name:"New Dataset" (owner=training_user)
Dataset:362  Name:"New Dataset2" (owner=training_user)
Dataset:363  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:364  Name:"MyDataset" (owner=training_user)
Dataset:365  Name:"MyDataset" (owner=training_user)
Dataset:366  Name:"MyDataset" (owner=training_user)
Dataset:403  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:404  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:405  Name:"Dataset 0" (owner=training_user-2)
Dataset:408  Name:"MyDataset" (owner=training_user)
Dataset:409  Name:"MyDataset" (owner=training_user)
Dataset:410  Name:"MyDataset" (owner=training_user)
<string>:150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
Dataset:411  Name:"New Dataset" (owner=training_user)
Dataset:412  Name:"New Dataset2" (owner=training_user)
Dataset:413  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:414  Name:"MyDataset" (owner=training_user)
Dataset:415  Name:"MyDataset" (owner=training_user)
Dataset:416  Name:"MyDataset" (owner=training_user)
Dataset:453  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:454  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:455  Name:"Dataset 0" (owner=training_user-2)
Dataset:458  Name:"MyDataset" (owner=training_user)
Dataset:459  Name:"MyDataset" (owner=training_user)
Dataset:460  Name:"MyDataset" (owner=training_user)
Dataset:461  Name:"New Dataset" (owner=training_user)
Dataset:462  Name:"New Dataset2" (owner=training_user)
Dataset:463  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:464  Name:"MyDataset" (owner=training_user)
Dataset:465  Name:"MyDataset" (owner=training_user)
Dataset:466  Name:"MyDataset" (owner=training_user)
Dataset:503  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:504  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:505  Name:"Dataset 0" (owner=training_user-2)
Dataset:508  Name:"MyDataset" (owner=training_user)
Dataset:509  Name:"MyDataset" (owner=training_user)
Dataset:510  Name:"MyDataset" (owner=training_user)
Dataset:511  Name:"New Dataset" (owner=training_user)
Dataset:512  Name:"New Dataset2" (owner=training_user)
Dataset:513  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:514  Name:"MyDataset" (owner=training_user)
Dataset:515  Name:"MyDataset" (owner=training_user)
Dataset:516  Name:"MyDataset" (owner=training_user)
Dataset:553  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:554  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:555  Name:"Dataset 0" (owner=training_user-2)
Dataset:558  Name:"MyDataset" (owner=training_user)
Dataset:559  Name:"MyDataset" (owner=training_user)
Dataset:560  Name:"MyDataset" (owner=training_user)
Dataset:561  Name:"New Dataset" (owner=training_user)
Dataset:562  Name:"New Dataset2" (owner=training_user)
Dataset:563  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:564  Name:"MyDataset" (owner=training_user)
Dataset:565  Name:"MyDataset" (owner=training_user)
Dataset:566  Name:"MyDataset" (owner=training_user)
Dataset:603  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:604  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:605  Name:"Dataset 0" (owner=training_user-2)
Dataset:608  Name:"MyDataset" (owner=training_user)
Dataset:609  Name:"MyDataset" (owner=training_user)
Dataset:610  Name:"MyDataset" (owner=training_user)
Dataset:611  Name:"New Dataset" (owner=training_user)
Dataset:612  Name:"New Dataset2" (owner=training_user)
Dataset:613  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:614  Name:"MyDataset" (owner=training_user)
Dataset:615  Name:"MyDataset" (owner=training_user)
Dataset:616  Name:"MyDataset" (owner=training_user)
Dataset:653  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:654  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:655  Name:"Dataset 0" (owner=training_user-2)

Images in Dataset: 652 
 ==================================================
Image:2852  Name:"test.fake" (owner=training_user)

Image:2853
==================================================
test&sizeT=10&sizeZ=5&sizeC=3.fake 
 X: 512
 Y: 512
 Z: 5
 C: 3
 T: 10
Channel: 0 Color: (255, 0, 0)
Lookup table: None
Is reverse intensity? False
Channel: 1 Color: (0, 255, 0)
Lookup table: None
Is reverse intensity? False
Channel: 2 Color: (0, 0, 255)
Lookup table: None
Is reverse intensity? False
 Pixel Size X: None

List Screens:
==================================================
Screen:501  Name:"Screen" (owner=training_user)
  Plate:601  Name:"Plate" (owner=training_user)
  Plate:602  Name:"Plate Name 0" (owner=training_user)
Screen:451  Name:"Screen" (owner=training_user)
  Plate:551  Name:"Plate" (owner=training_user)
  Plate:552  Name:"Plate Name 0" (owner=training_user)
Screen:401  Name:"Screen" (owner=training_user)
  Plate:501  Name:"Plate" (owner=training_user)
  Plate:502  Name:"Plate Name 0" (owner=training_user)
Screen:351  Name:"Screen" (owner=training_user)
  Plate:451  Name:"Plate" (owner=training_user)
  Plate:452  Name:"Plate Name 0" (owner=training_user)
Screen:301  Name:"Screen" (owner=training_user)
  Plate:401  Name:"Plate" (owner=training_user)
  Plate:402  Name:"Plate Name 0" (owner=training_user)
Screen:251  Name:"Screen" (owner=training_user)
  Plate:351  Name:"Plate" (owner=training_user)
  Plate:352  Name:"Plate Name 0" (owner=training_user)
Screen:201  Name:"Screen" (owner=training_user)
  Plate:301  Name:"Plate" (owner=training_user)
  Plate:302  Name:"Plate Name 0" (owner=training_user)
Screen:151  Name:"Screen" (owner=training_user)
  Plate:151  Name:"Plate" (owner=training_user)
  Plate:152  Name:"Plate Name 0" (owner=training_user)
Screen:101  Name:"Screen" (owner=training_user)
  Plate:101  Name:"Plate" (owner=training_user)
  Plate:102  Name:"Plate Name 0" (owner=training_user)
Screen:51  Name:"Screen" (owner=training_user)
  Plate:51  Name:"Plate" (owner=training_user)
  Plate:52  Name:"Plate Name 0" (owner=training_user)
Screen:1  Name:"Screen" (owner=training_user)
  Plate:1  Name:"Plate" (owner=training_user)
  Plate:2  Name:"Plate Name 0" (owner=training_user)
Screen:502  Name:"Screen" (owner=training_user-2)
Screen:452  Name:"Screen" (owner=training_user-2)
Screen:402  Name:"Screen" (owner=training_user-2)
Screen:352  Name:"Screen" (owner=training_user-2)
Screen:302  Name:"Screen" (owner=training_user-2)
Screen:252  Name:"Screen" (owner=training_user-2)
Screen:202  Name:"Screen" (owner=training_user-2)
Screen:152  Name:"Screen" (owner=training_user-2)
Screen:102  Name:"Screen" (owner=training_user-2)
Screen:52  Name:"Screen" (owner=training_user-2)
Screen:2  Name:"Screen" (owner=training_user-2)

Plate:602
==================================================

Number of fields: (0, 0)

Grid size: {'rows': 1, 'columns': 3}

Wells in Plate: Plate Name 0
  Well:  0 0  Fields: 1
    Image:  SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 2854
  Well:  0 1  Fields: 1
    Image:  SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 2855
  Well:  0 2  Fields: 1
    Image:  SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 2856
1901 <class 'omero.model.MapAnnotationI'>
 added by  training_user
Image ID: 2853
Annotation ID: 1901
2853
Channel rendering settings:
Name:  0
  Color: FF0000
  Active: True
  Levels: 0.0 - 255.0
Name:  1
  Color: 00FF00
  Active: True
  Levels: 0.0 - 255.0
Name:  2
  Color: 0000FF
  Active: True
  Levels: 0.0 - 255.0
isGreyscaleRenderingModel: False
Default Z/T positions:
    Z = 2, T = 0
Rendering Defs on Image:
   ID: 2803 (owner: training_user training_user)
Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
ROI:  ID: 502
   Shape:    id 521    theT 0    theZ 2    textValue test-Rectangle    type Rectangle    x 50.0    y 200.0    width 100.0    height 50.0 
   Shape:    id 522    theT 0    theZ 2    textValue test-Ellipse    type Ellipse    x 200.0    y 50.0    radiusX 100.0    radiusY 50.0 
ROI:  ID: 503
   Shape:    id 523    theT 0    theZ 2    textValue test-Line    type Line    x1 50.0    x2 150.0    y1 200.0    y2 250.0 
ROI:  ID: 504
   Shape:    id 524    theT 0    theZ 0    textValue test-Mask    type Mask    x 50.0    y 50.0    width 100.0    height 100.0 
ROI:  ID: 505
   Shape:    id 525    theT 0    theZ 2    textValue test-Point    type Point    x 50.0    y 200.0 
ROI:  ID: 506
<class 'omero.model.PolygonI'>  Not supported by this code
   Shape:    id 526    theT 0    theZ 2    textValue test-Polygon 
Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
Removing Shape from ROI...
Deleting ROI: 507
Table Columns:
    Uid
    MyStringColumnInit
Row count: 10

Get All Data for rows:  [3, 5, 7]
Data for Column:  Uid
    1
    2
    3
    4
    5
    6
    7
    8
    9
    10
Data for Column:  MyStringColumnInit
    one
    two
    three
    four
    five
    six
    seven
    eight
    nine
    ten

Get All Data for rows with slice:  [3, 5, 7]
Data for Column:  Uid
    4
    6
    8
Data for Column:  MyStringColumnInit
    four
    six
    eight

Get Data for cols:  [1]  and between rows:  3 - 7
Data for Column:  MyStringColumnInit
    four
    five
    six
    seven

Get Data for cols:  [1]  and between rows:  3 - 7  with slice
Data for Column:  MyStringColumnInit
    four
    five
    six
    seven
Query Results for Column:  Uid
    3
    4
    5
    6
    7
    8
Query Results for Column:  MyStringColumnInit
    three
    four
    five
    six
    seven
    eight
Opened table with row-count: 10
New dataset, Id: 657
{'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
1905 <class 'omero.model.TagAnnotationI'>  added by  training_user
Tag value: New Tag
1906 <class 'omero.model.MapAnnotationI'>  added by  training_user

Creating an OriginalFile and FileAnnotation
Attaching FileAnnotation to Dataset:  File ID: 1907 , README.txt Size: 15

Annotations on Dataset: New Dataset
File ID: 8997 README.txt Size: 15

Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
File downloaded!
1507 README.txt
57 README.txt
1557 README.txt
1607 README.txt
7 README.txt
107 README.txt
157 README.txt
1407 README.txt
1457 README.txt
1907 README.txt
1657 README.txt
Found Annotation with namespace:  imperial.training.demo
Plane:  0 0 0
Applying channel Names: ['0', '1', '2']  Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
[(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]

List Datasets:
ID: 8 Name: MyDataset
ID: 9 Name: MyDataset
ID: 10 Name: MyDataset
ID: 14 Name: MyDataset
ID: 15 Name: MyDataset
ID: 16 Name: MyDataset
ID: 58 Name: MyDataset
ID: 59 Name: MyDataset
ID: 60 Name: MyDataset
ID: 64 Name: MyDataset
ID: 65 Name: MyDataset
ID: 66 Name: MyDataset
ID: 108 Name: MyDataset
ID: 109 Name: MyDataset
ID: 110 Name: MyDataset
ID: 114 Name: MyDataset
ID: 115 Name: MyDataset
ID: 116 Name: MyDataset
ID: 158 Name: MyDataset
ID: 159 Name: MyDataset
ID: 160 Name: MyDataset
ID: 164 Name: MyDataset
ID: 165 Name: MyDataset
ID: 166 Name: MyDataset
ID: 358 Name: MyDataset
ID: 359 Name: MyDataset
ID: 360 Name: MyDataset
ID: 364 Name: MyDataset
ID: 365 Name: MyDataset
ID: 366 Name: MyDataset
ID: 408 Name: MyDataset
ID: 409 Name: MyDataset
ID: 410 Name: MyDataset
ID: 414 Name: MyDataset
ID: 415 Name: MyDataset
ID: 416 Name: MyDataset
ID: 458 Name: MyDataset
ID: 459 Name: MyDataset
ID: 460 Name: MyDataset
ID: 464 Name: MyDataset
ID: 465 Name: MyDataset
ID: 466 Name: MyDataset
ID: 508 Name: MyDataset
ID: 509 Name: MyDataset
ID: 510 Name: MyDataset
ID: 514 Name: MyDataset
ID: 515 Name: MyDataset
ID: 516 Name: MyDataset
ID: 558 Name: MyDataset
ID: 559 Name: MyDataset
ID: 560 Name: MyDataset
ID: 564 Name: MyDataset
ID: 565 Name: MyDataset
ID: 566 Name: MyDataset
ID: 608 Name: MyDataset
ID: 609 Name: MyDataset
ID: 610 Name: MyDataset
ID: 614 Name: MyDataset
ID: 615 Name: MyDataset
ID: 616 Name: MyDataset
ID: 658 Name: MyDataset
ID: 659 Name: MyDataset
ID: 660 Name: MyDataset

List Tags:
ID: 8 Text: MyTag Desc: MyTag 0
ID: 9 Text: MyTag Desc: MyTag 1
ID: 10 Text: MyTag Desc: MyTag 2
ID: 16 Text: MyTag Desc: MyTag 0
ID: 17 Text: MyTag Desc: MyTag 1
ID: 18 Text: MyTag Desc: MyTag 2
ID: 58 Text: MyTag Desc: MyTag 0
ID: 59 Text: MyTag Desc: MyTag 1
ID: 60 Text: MyTag Desc: MyTag 2
ID: 66 Text: MyTag Desc: MyTag 0
ID: 67 Text: MyTag Desc: MyTag 1
ID: 68 Text: MyTag Desc: MyTag 2
ID: 108 Text: MyTag Desc: MyTag 0
ID: 109 Text: MyTag Desc: MyTag 1
ID: 110 Text: MyTag Desc: MyTag 2
ID: 116 Text: MyTag Desc: MyTag 0
ID: 117 Text: MyTag Desc: MyTag 1
ID: 118 Text: MyTag Desc: MyTag 2
ID: 158 Text: MyTag Desc: MyTag 0
ID: 159 Text: MyTag Desc: MyTag 1
ID: 160 Text: MyTag Desc: MyTag 2
ID: 166 Text: MyTag Desc: MyTag 0
ID: 167 Text: MyTag Desc: MyTag 1
ID: 168 Text: MyTag Desc: MyTag 2
ID: 1408 Text: MyTag Desc: MyTag 0
ID: 1409 Text: MyTag Desc: MyTag 1
ID: 1410 Text: MyTag Desc: MyTag 2
ID: 1416 Text: MyTag Desc: MyTag 0
ID: 1417 Text: MyTag Desc: MyTag 1
ID: 1418 Text: MyTag Desc: MyTag 2
ID: 1458 Text: MyTag Desc: MyTag 0
ID: 1459 Text: MyTag Desc: MyTag 1
ID: 1460 Text: MyTag Desc: MyTag 2
ID: 1466 Text: MyTag Desc: MyTag 0
ID: 1467 Text: MyTag Desc: MyTag 1
ID: 1468 Text: MyTag Desc: MyTag 2
ID: 1508 Text: MyTag Desc: MyTag 0
ID: 1509 Text: MyTag Desc: MyTag 1
ID: 1510 Text: MyTag Desc: MyTag 2
ID: 1516 Text: MyTag Desc: MyTag 0
ID: 1517 Text: MyTag Desc: MyTag 1
ID: 1518 Text: MyTag Desc: MyTag 2
ID: 1558 Text: MyTag Desc: MyTag 0
ID: 1559 Text: MyTag Desc: MyTag 1
ID: 1560 Text: MyTag Desc: MyTag 2
ID: 1566 Text: MyTag Desc: MyTag 0
ID: 1567 Text: MyTag Desc: MyTag 1
ID: 1568 Text: MyTag Desc: MyTag 2
ID: 1608 Text: MyTag Desc: MyTag 0
ID: 1609 Text: MyTag Desc: MyTag 1
ID: 1610 Text: MyTag Desc: MyTag 2
ID: 1616 Text: MyTag Desc: MyTag 0
ID: 1617 Text: MyTag Desc: MyTag 1
ID: 1618 Text: MyTag Desc: MyTag 2
ID: 1658 Text: MyTag Desc: MyTag 0
ID: 1659 Text: MyTag Desc: MyTag 1
ID: 1660 Text: MyTag Desc: MyTag 2
ID: 1666 Text: MyTag Desc: MyTag 0
ID: 1667 Text: MyTag Desc: MyTag 1
ID: 1668 Text: MyTag Desc: MyTag 2
ID: 1908 Text: MyTag Desc: MyTag 0
ID: 1909 Text: MyTag Desc: MyTag 1
ID: 1910 Text: MyTag Desc: MyTag 2
New dataset, Id: 661
New dataset 2, Id: 662
test&sizeT=10&sizeZ=5&sizeC=3.fake
Tile at zct tile:  2.5 0 0 (5, 5, 100, 100)
[[  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 ...
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]]
shape:  (100, 100)
min: 0  max: 104 pixel type: uint8
Average : 53.9125
Getting data for T, tile: 0 (256.0, 0, 10, 512)
Getting data for T, tile: 1 (256.0, 0, 10, 512)
Getting data for T, tile: 2 (256.0, 0, 10, 512)
Getting data for T, tile: 3 (256.0, 0, 10, 512)
Getting data for T, tile: 4 (256.0, 0, 10, 512)
Getting data for T, tile: 5 (256.0, 0, 10, 512)
Getting data for T, tile: 6 (256.0, 0, 10, 512)
Getting data for T, tile: 7 (256.0, 0, 10, 512)
Getting data for T, tile: 8 (256.0, 0, 10, 512)
Getting data for T, tile: 9 (256.0, 0, 10, 512)
kymograph_data (512, 100)
Attaching kymograph.png to image
test&sizeT=10&sizeZ=5&sizeC=3.fake
Tile at zct tile:  2.5 0 0 (5, 5, 100, 100)
[[  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 ...
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]]
shape:  (100, 100)
min: 0  max: 104 pixel type: uint8
Average : 53.9125
Getting data for T, tile: 0 (256.0, 0, 10, 512)
Getting data for T, tile: 1 (256.0, 0, 10, 512)
Getting data for T, tile: 2 (256.0, 0, 10, 512)
Getting data for T, tile: 3 (256.0, 0, 10, 512)
Getting data for T, tile: 4 (256.0, 0, 10, 512)
Getting data for T, tile: 5 (256.0, 0, 10, 512)
Getting data for T, tile: 6 (256.0, 0, 10, 512)
Getting data for T, tile: 7 (256.0, 0, 10, 512)
Getting data for T, tile: 8 (256.0, 0, 10, 512)
Getting data for T, tile: 9 (256.0, 0, 10, 512)
kymograph_data (512, 100)
Attaching kymograph.png to image
No file downloaded. Project not rated.
New image, Id: 2862
Starting at: http://nginx/web/api/
CSRF token j0ssuAgEdCAk9EkHIkW6qcJqmiqXOu5tOiJLBIrMU8jMvuALmq9RNk7QxdrILYCl
Servers:
-id: 1
 name: omero
 host: omero
 port: 4064
-id: 2
 name: testintegration
 host: testintegration
 port: 14064
eventContext {'sessionId': 2661, 'sessionUuid': '50f29ab8-c32e-4b77-bc0b-91b23df60cdc', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
Projects:
   2 Project 0
   3 Project 0
Created Project: 606 API TEST foo
{'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 606, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/606/datasets/'}}
!! 03/28/24 01:00:48.610 error: communicator not destroyed during global destruction.+ deactivate
+ '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
+ PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+ export PATH
+ unset _OLD_VIRTUAL_PATH
+ '[' -n '' ']'
+ '[' -n /bin/bash -o -n '' ']'
+ hash -r
+ '[' -n '' ']'
+ unset VIRTUAL_ENV
+ '[' '!' '' = nondestructive ']'
+ unset -f deactivate
+ cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
+ javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
+ java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
omero.cmd.Delete2Response@4275c20c
omero.cmd.Delete2Response@186978a6
one [class java.lang.String]	1.0 [class java.lang.Double]	
two [class java.lang.String]	2.0 [class java.lang.Double]	
three [class java.lang.String]	3.0 [class java.lang.Double]	
-1.0
0
1
2
   0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
   1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
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Project:102 Project 0
Project:601 Project 1
dataset:657 New Dataset
dataset:651 Dataset 1-1
dataset:652 Dataset 1-2
Project:451 Project 1
dataset:517 new Name 1
dataset:507 New Dataset
dataset:502 Dataset 1-2
dataset:501 Dataset 1-1
dataset:518 new Name 2
Project:2 Project 0
Project:101 Project 1
dataset:107 New Dataset
dataset:117 new Name 1
dataset:102 Dataset 1-2
dataset:101 Dataset 1-1
dataset:118 new Name 2
Project:602 Project 0
Project:502 Project 0
Project:352 Project 0
Project:351 Project 1
dataset:417 new Name 1
dataset:418 new Name 2
dataset:401 Dataset 1-1
dataset:407 New Dataset
dataset:402 Dataset 1-2
Project:401 Project 1
dataset:457 New Dataset
dataset:451 Dataset 1-1
dataset:467 new Name 1
dataset:468 new Name 2
dataset:452 Dataset 1-2
Project:551 Project 1
dataset:618 new Name 2
dataset:607 New Dataset
dataset:602 Dataset 1-2
dataset:617 new Name 1
dataset:601 Dataset 1-1
Project:51 Project 1
dataset:52 Dataset 1-2
dataset:57 New Dataset
dataset:68 new Name 2
dataset:67 new Name 1
dataset:51 Dataset 1-1
Project:302 Project 0
Project:402 Project 0
Project:151 Project 1
dataset:167 new Name 1
dataset:151 Dataset 1-1
dataset:152 Dataset 1-2
dataset:168 new Name 2
dataset:157 New Dataset
Project:1 Project 1
dataset:1 Dataset 1-1
dataset:2 Dataset 1-2
dataset:7 New Dataset
dataset:18 new Name 2
dataset:17 new Name 1
Project:301 Project 1
dataset:367 new Name 1
dataset:357 New Dataset
dataset:368 new Name 2
dataset:351 Dataset 1-1
dataset:352 Dataset 1-2
Project:501 Project 1
dataset:557 New Dataset
dataset:568 new Name 2
dataset:567 new Name 1
dataset:551 Dataset 1-1
dataset:552 Dataset 1-2
Project:52 Project 0
Project:152 Project 0
Project:452 Project 0
Project:552 Project 0
image:2862 New Image
image:2863 newImageFrom2853
image:2852 test.fake
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3
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screen:102 Screen
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plate:401 Plate
plate:402 Plate Name 0
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plate:502 Plate Name 0
plate:501 Plate
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plate:51 Plate
plate:52 Plate Name 0
screen:201 Screen
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screen:101 Screen
plate:102 Plate Name 0
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List Datasets:
ID: 8 Name: MyDataset
ID: 9 Name: MyDataset
ID: 10 Name: MyDataset
ID: 14 Name: MyDataset
ID: 15 Name: MyDataset
ID: 16 Name: MyDataset
ID: 58 Name: MyDataset
ID: 59 Name: MyDataset
ID: 60 Name: MyDataset
ID: 64 Name: MyDataset

List Tags:
ID: 16 NS: omero.training.demo
ID: 17 NS: omero.training.demo
ID: 18 NS: omero.training.demo
ID: 66 NS: omero.training.demo
ID: 67 NS: omero.training.demo
ID: 68 NS: omero.training.demo
ID: 116 NS: omero.training.demo
ID: 117 NS: omero.training.demo
ID: 118 NS: omero.training.demo
ID: 166 NS: omero.training.demo
Dataset:554 Orphaned dataset 2
Dataset:358 MyDataset
Dataset:162 New Dataset2
Project:501 Project 1
Dataset:61 New Dataset
Dataset:604 Orphaned dataset 2
Project:51 Project 1
Dataset:654 Orphaned dataset 2
Project:401 Project 1
Dataset:416 MyDataset
Dataset:361 New Dataset
Dataset:109 MyDataset
Dataset:564 MyDataset
Dataset:159 MyDataset
Dataset:514 MyDataset
Dataset:104 Orphaned dataset 2
Dataset:3 Orphaned dataset 1
Dataset:153 Orphaned dataset 1
Project:301 Project 1
Dataset:511 New Dataset
Dataset:510 MyDataset
Dataset:562 New Dataset2
Dataset:610 MyDataset
Dataset:60 MyDataset
Dataset:4 Orphaned dataset 2
Dataset:12 New Dataset2
Dataset:603 Orphaned dataset 1
Dataset:458 MyDataset
Dataset:114 MyDataset
Dataset:515 MyDataset
Dataset:111 New Dataset
Dataset:653 Orphaned dataset 1
Dataset:160 MyDataset
Dataset:62 New Dataset2
Project:351 Project 1
Dataset:15 MyDataset
Dataset:409 MyDataset
Dataset:354 Orphaned dataset 2
Dataset:110 MyDataset
Dataset:558 MyDataset
Dataset:503 Orphaned dataset 1
Dataset:660 MyDataset
Dataset:404 Orphaned dataset 2
Dataset:612 New Dataset2
Dataset:608 MyDataset
Dataset:360 MyDataset
Dataset:460 MyDataset
Dataset:666 MyDataset
Dataset:513 FileAnnotationDelete
Dataset:614 MyDataset
Dataset:103 Orphaned dataset 1
Dataset:459 MyDataset
Dataset:359 MyDataset
Dataset:464 MyDataset
Dataset:161 New Dataset
Dataset:665 MyDataset
Dataset:403 Orphaned dataset 1
Dataset:59 MyDataset
Dataset:164 MyDataset
Dataset:461 New Dataset
Dataset:560 MyDataset
Project:1 Project 1
Dataset:463 FileAnnotationDelete
Dataset:413 FileAnnotationDelete
Dataset:658 MyDataset
Dataset:565 MyDataset
Dataset:58 MyDataset
Dataset:615 MyDataset
Dataset:158 MyDataset
Project:551 Project 1
Dataset:63 FileAnnotationDelete
Dataset:509 MyDataset
Dataset:453 Orphaned dataset 1
Dataset:54 Orphaned dataset 2
Dataset:566 MyDataset
Dataset:113 FileAnnotationDelete
Dataset:663 FileAnnotationDelete
Project:451 Project 1
Dataset:561 New Dataset
Dataset:466 MyDataset
Dataset:454 Orphaned dataset 2
Dataset:112 New Dataset2
Dataset:411 New Dataset
Dataset:53 Orphaned dataset 1
Dataset:154 Orphaned dataset 2
Dataset:616 MyDataset
Dataset:65 MyDataset
Dataset:611 New Dataset
Dataset:465 MyDataset
Dataset:363 FileAnnotationDelete
Dataset:559 MyDataset
Dataset:563 FileAnnotationDelete
Dataset:512 New Dataset2
Dataset:662 New Dataset2
Dataset:516 MyDataset
Dataset:8 MyDataset
Dataset:115 MyDataset
Project:101 Project 1
Dataset:116 MyDataset
Dataset:11 New Dataset
Project:151 Project 1
Dataset:609 MyDataset
Dataset:410 MyDataset
Dataset:613 FileAnnotationDelete
Dataset:165 MyDataset
Dataset:462 New Dataset2
Dataset:353 Orphaned dataset 1
Dataset:661 New Dataset
Dataset:16 MyDataset
Dataset:66 MyDataset
Dataset:553 Orphaned dataset 1
Dataset:664 MyDataset
Dataset:365 MyDataset
Dataset:366 MyDataset
Dataset:659 MyDataset
Dataset:504 Orphaned dataset 2
Dataset:408 MyDataset
Dataset:362 New Dataset2
Dataset:108 MyDataset
Dataset:412 New Dataset2
Dataset:415 MyDataset
Dataset:14 MyDataset
Dataset:508 MyDataset
Dataset:64 MyDataset
Dataset:414 MyDataset
Dataset:163 FileAnnotationDelete
Dataset:166 MyDataset
Dataset:13 FileAnnotationDelete
Dataset:364 MyDataset
Dataset:9 MyDataset
Dataset:10 MyDataset
Project:601 Project 1
Size:0
512 512
9
9
1
Logged in as ladmin_user
Added 'training_user's tag' to dataset MyDataset on behalf of training_user
Added 'ladmin_user's tag' to dataset MyDataset as admin.
Finished: SUCCESS