01:03:09 Started by upstream project "Trigger" build number 5
01:03:09 originally caused by:
01:03:09 Started by timer
01:03:09 Running as SYSTEM
01:03:09 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
01:03:09 [OMERO-training] $ /bin/bash -xe /tmp/jenkins15792339560522805703.sh
01:03:09 + rm -rf /home/omero/workspace/OMERO-training/.venv3
01:03:12 + python3 -m venv /home/omero/workspace/OMERO-training/.venv3
01:03:15 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
01:03:15 ++ deactivate nondestructive
01:03:15 ++ '[' -n '' ']'
01:03:15 ++ '[' -n '' ']'
01:03:15 ++ '[' -n /bin/bash -o -n '' ']'
01:03:15 ++ hash -r
01:03:15 ++ '[' -n '' ']'
01:03:15 ++ unset VIRTUAL_ENV
01:03:15 ++ '[' '!' nondestructive = nondestructive ']'
01:03:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
01:03:15 ++ export VIRTUAL_ENV
01:03:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:15 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:15 ++ export PATH
01:03:15 ++ '[' -n '' ']'
01:03:15 ++ '[' -z '' ']'
01:03:15 ++ _OLD_VIRTUAL_PS1=
01:03:15 ++ PS1='(.venv3) '
01:03:15 ++ export PS1
01:03:15 ++ '[' -n /bin/bash -o -n '' ']'
01:03:15 ++ hash -r
01:03:15 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:03:15 Collecting zeroc-ice==3.6.5
01:03:16 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:03:19 Installing collected packages: zeroc-ice
01:03:20 Successfully installed zeroc-ice-3.6.5
01:03:20 WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
01:03:20 You should consider upgrading via the '/home/omero/workspace/OMERO-training/.venv3/bin/python3 -m pip install --upgrade pip' command.
01:03:20 + pip install -U pip future setuptools
01:03:20 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:03:20 Collecting pip
01:03:20 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
01:03:21 Collecting future
01:03:21 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:03:21 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0)
01:03:21 Collecting setuptools
01:03:21 Using cached setuptools-69.2.0-py3-none-any.whl (821 kB)
01:03:21 Installing collected packages: setuptools, pip, future
01:03:21 Attempting uninstall: setuptools
01:03:21 Found existing installation: setuptools 53.0.0
01:03:21 Uninstalling setuptools-53.0.0:
01:03:21 Successfully uninstalled setuptools-53.0.0
01:03:22 Attempting uninstall: pip
01:03:22 Found existing installation: pip 21.2.3
01:03:23 Uninstalling pip-21.2.3:
01:03:23 Successfully uninstalled pip-21.2.3
01:03:24 Successfully installed future-1.0.0 pip-24.0 setuptools-69.2.0
01:03:24 + pip install markdown
01:03:25 Collecting markdown
01:03:25 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
01:03:25 Collecting importlib-metadata>=4.4 (from markdown)
01:03:25 Using cached importlib_metadata-7.0.2-py3-none-any.whl.metadata (4.6 kB)
01:03:25 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
01:03:25 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
01:03:26 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
01:03:26 Using cached importlib_metadata-7.0.2-py3-none-any.whl (24 kB)
01:03:26 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
01:03:26 Installing collected packages: zipp, importlib-metadata, markdown
01:03:26 Successfully installed importlib-metadata-7.0.2 markdown-3.6 zipp-3.18.1
01:03:26 + pip install mox3 pytest 'pytest-xdist<2'
01:03:26 Collecting mox3
01:03:26 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
01:03:27 Collecting pytest
01:03:27 Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
01:03:27 Collecting pytest-xdist<2
01:03:27 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
01:03:27 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
01:03:27 Using cached pbr-6.0.0-py2.py3-none-any.whl.metadata (1.3 kB)
01:03:27 Collecting fixtures>=3.0.0 (from mox3)
01:03:27 Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB)
01:03:27 Collecting iniconfig (from pytest)
01:03:27 Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
01:03:27 Collecting packaging (from pytest)
01:03:27 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
01:03:27 Collecting pluggy<2.0,>=1.4 (from pytest)
01:03:27 Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
01:03:27 Collecting exceptiongroup>=1.0.0rc8 (from pytest)
01:03:27 Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB)
01:03:27 Collecting tomli>=1 (from pytest)
01:03:27 Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
01:03:27 Collecting execnet>=1.1 (from pytest-xdist<2)
01:03:27 Using cached execnet-2.0.2-py3-none-any.whl.metadata (2.9 kB)
01:03:27 Collecting pytest-forked (from pytest-xdist<2)
01:03:27 Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
01:03:27 Collecting six (from pytest-xdist<2)
01:03:27 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
01:03:27 Collecting py (from pytest-forked->pytest-xdist<2)
01:03:27 Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
01:03:27 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
01:03:27 Using cached pytest-8.1.1-py3-none-any.whl (337 kB)
01:03:27 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
01:03:27 Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB)
01:03:27 Using cached execnet-2.0.2-py3-none-any.whl (37 kB)
01:03:27 Using cached fixtures-4.1.0-py3-none-any.whl (64 kB)
01:03:27 Using cached pbr-6.0.0-py2.py3-none-any.whl (107 kB)
01:03:27 Using cached pluggy-1.4.0-py3-none-any.whl (20 kB)
01:03:27 Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
01:03:27 Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
01:03:27 Using cached packaging-24.0-py3-none-any.whl (53 kB)
01:03:27 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
01:03:27 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
01:03:28 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
01:03:28 Installing collected packages: tomli, six, py, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-forked, mox3, pytest-xdist
01:03:28 Successfully installed exceptiongroup-1.2.0 execnet-2.0.2 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.0 pbr-6.0.0 pluggy-1.4.0 py-1.11.0 pytest-8.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.16.0 tomli-2.0.1
01:03:28 + pip install tables
01:03:29 Collecting tables
01:03:29 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
01:03:29 Collecting numpy>=1.19.0 (from tables)
01:03:29 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:03:29 Collecting numexpr>=2.6.2 (from tables)
01:03:29 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
01:03:29 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.0)
01:03:30 Collecting py-cpuinfo (from tables)
01:03:30 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:03:30 Collecting blosc2>=2.3.0 (from tables)
01:03:30 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
01:03:30 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
01:03:30 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
01:03:30 Collecting msgpack (from blosc2>=2.3.0->tables)
01:03:30 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
01:03:30 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:03:30 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:03:30 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB)
01:03:30 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
01:03:30 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:03:30 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
01:03:30 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
01:03:31 Installing collected packages: py-cpuinfo, numpy, ndindex, msgpack, numexpr, blosc2, tables
01:03:34 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 py-cpuinfo-9.0.0 tables-3.9.2
01:03:34 + pip install jinja2
01:03:35 Collecting jinja2
01:03:35 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
01:03:35 Collecting MarkupSafe>=2.0 (from jinja2)
01:03:35 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
01:03:35 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
01:03:35 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
01:03:35 Installing collected packages: MarkupSafe, jinja2
01:03:35 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
01:03:35 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-py-5.19.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
01:03:36 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 4
01:03:40 Copied 2 artifacts from "OMERO-build" build number 4
01:03:40 Copied 2 artifacts from "OMERO-build-build" build number 4
01:03:40 [OMERO-training] $ /bin/bash -xe /tmp/jenkins4169304796611158351.sh
01:03:40 + source /home/settings.env
01:03:40 ++ OMERO_DB_HOST=pg
01:03:40 ++ OMERO_DB_USER=postgres
01:03:40 ++ OMERO_DB_PASS=
01:03:40 ++ OMERO_ROOT_PASS=omero
01:03:40 ++ OMERO_DATA_DIR=/OMERO
01:03:40 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:03:40 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
01:03:40 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
01:03:40 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
01:03:40 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
01:03:40 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
01:03:40 ++ ls openmicroscopy-5.6.3-435-c696c9b734-ice36.zip
01:03:40 + ZIP=openmicroscopy-5.6.3-435-c696c9b734-ice36.zip
01:03:40 + DIST=openmicroscopy-5.6.3-435-c696c9b734-ice36
01:03:40 + unzip -n openmicroscopy-5.6.3-435-c696c9b734-ice36.zip
01:03:40 Archive: openmicroscopy-5.6.3-435-c696c9b734-ice36.zip
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.classpath-template
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.github/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.github/Pull_Request_Template.md
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.github/workflows/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.github/workflows/docker_build.yml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.github/workflows/release.yml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.github/workflows/source_build.yml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.github/workflows/update.yaml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.mailmap
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/.project
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/CMakeLists.txt
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/CONTRIBUTING.md
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/Dockerfile
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/LICENSE.txt
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/README.md
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/SUPPORT.md
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/build.bat
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/build.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/build.xml
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/.classpath
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/.project
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/resources/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/resources/excludebugs.xml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/resources/global.xml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/resources/hibernate.xml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/resources/lifecycle.xml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/resources/version.xml
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/scripts/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/scripts/parse_version
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/scripts/source-archive.py
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/build.xml
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/README.md
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/build.xml
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/plugins/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/plugins/robot.py
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/resources/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/resources/robot.template
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/resources/web/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/resources/web/annotation.txt
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/resources/web/login.txt
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/resources/web/thumbs.txt
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/resources/web/tree.txt
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/resources/web/webadmin.txt
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/resources/well_sample_posXY.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/robot_setup.sh
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/annotate_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/center_right_panel_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/create_scenario.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/delete_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/download_options_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/filter_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/forms_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/history_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/map_annotations_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/post_copy_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/post_cut_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/post_drag_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/post_manage_test.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/rdef_test.robot
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01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/webadmin_login.robot
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tests/ui/testcases/web/webadmin_user_settings.robot
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/CMakeLists.txt
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/cmake/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/cmake/CompilerChecks.cmake
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/cmake/FindIce.cmake
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/cmake/GTest.cmake
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01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/cmake/Version.cmake
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CHANGES
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01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/README
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/internal_utils.cmake
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-death-test.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-message.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h.pump
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-printers.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-spi.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-test-part.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-typed-test.h
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01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_prod.h
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h.pump
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-string.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h.pump
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h.pump
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/prime_tables.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample10_unittest.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1_unittest.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.cc
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01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2_unittest.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3-inl.h
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01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4.cc
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01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4_unittest.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample5_unittest.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample6_unittest.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample7_unittest.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample8_unittest.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample9_unittest.cc
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gen_gtest_pred_impl.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gtest-config.in
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/pump.py
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-death-test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-filepath.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-internal-inl.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-port.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-printers.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-test-part.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-typed-test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest_main.cc
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-port_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.h
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-unittest-api_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test_.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test_.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_environment_test.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest_.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test_.cc
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest.py
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01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroFS/test/integration/
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01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/fs.testng.xml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/gateway.testng.xml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration.testng.xml
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/AbstractServerImportTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/AbstractServerTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/AbstractTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/AdminServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/AgentTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/BfPixelBufferTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/BlockSizeTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ClientUsageTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/CmdCallbackTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ConfigurationServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/DeleteServicePermissionsTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/DeleteServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/DiskUsageTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/DuplicationTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ExporterTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ExtendedAnnotationTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/FindParentsChildrenTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ImportAsTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ImportLibraryTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ImporterTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/LegalGraphTargetsTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/LightAdminPrivilegesTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/LightAdminRolesTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/MapAnnotationTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/MetadataServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ModelMockFactory.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/PermissionsTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/PermissionsTestAll.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/PixelsServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/PojosServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ProjectionServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/PyramidMinMaxTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/RawFileStoreTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/RawPixelsStoreTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/RenderingEngineTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/RenderingSettingsServicePermissionsTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/RenderingSettingsServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/RepositoryServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ResetPasswordTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/RoiServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/RolesTests.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/ScriptServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/TableTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/UpdateServiceTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/UpgradeCheckTest.java
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/AnnotationMoveTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveAndPermissionsTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveCombinedDataTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveDatasetTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveImageWithAcquisitionDataTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveImageWithRoiFromOtherUserTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveImageWithRoiTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/MultiImageFilesetMoveTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chgrp/RenderingSettingsMoveTest.java
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chmod/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chmod/PermissionsTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chmod/RolesTest.java
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chown/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/chown/PermissionsTest.java
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/delete/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/delete/AdditionalDeleteTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/delete/DeleteProjectedImageTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/delete/MultiImageFilesetDeleteTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/delete/SpwDeleteTest.java
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/AdminFacilityTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/BrowseFacilityTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/DataManagerFacilityTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/GatewayTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/GatewayUsageTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/LoadFacilityTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/MetadataFacilityTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/ROIFacilityTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/RawDataFacilityTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/SearchFacilityTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/gateway/TablesFacilityTest.java
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/thumbnail/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/thumbnail/BatchLoadingTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/thumbnail/SingleFileTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/thumbnail/SkipThumbnailsPermissionsTest.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroJava/test/integration/thumbnail/Utils.java
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/bin/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/bin/omero
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/bin/omero.bat
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/bin/setpythonpath.bat
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/bin/winconfig.bat
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/build.xml
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/examples/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/examples/createSession.py
01:03:40 extracting: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/examples/load.omero
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/examples/projection_1.py
01:03:40 extracting: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/examples/submit.omero
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/examples/upload.omero
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/ice.config
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/ivy.xml
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/manualtests/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/manualtests/README.txt
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/manualtests/populate_roi_test.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/setup.py
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/
01:03:40 extracting: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/__init__.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/conftest.py
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/
01:03:40 extracting: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/__init__.py
01:03:40 extracting: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/client_ctors.cfg
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/
01:03:40 extracting: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/__init__.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/cli.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_admin.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_chgrp.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_chown.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_cleanse.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_db.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_delete.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_download.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_duplicate.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_fs.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_group.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_import.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_import_bulk.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_ldap.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_metadata.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_obj.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_pyramids.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_script.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_search.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_sessions.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_tag.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_upload.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/clitest/test_user.py
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/fstest/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/fstest/test_rename.py
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/gatewaytest/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/gatewaytest/__init__.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_annotation.py
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01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/linux64-native/libnativewindow_jvm.so
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/logback-build.xml
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/patches/
01:03:40 extracting: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/patches/hibernate-3.5-ColumnTransformer.patch.gz
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/JHotDraw-7.0.9.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/TableLayout-bin-jdk1.5-2009-08-26.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/ant-1.8.0.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/ant-contrib-1.0b3.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/ant-junit-1.8.0.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/ant-launcher-1.8.0.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/ant-nodeps-1.8.0.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/ant-trax-1.8.0.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/batik-all-1.8pre-jdk6.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/bufr-1.1.00.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/checkstyle-4.3.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/commons-validator-1.3.1.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/findbugs-ant-1.2.1.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/geronimo-spec-jta-1.0.1B-rc4.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/grib-5.1.03.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/hibernate-core-3.5.6-4510.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/hibernate-jpa-2.0-api-1.0.0.Final.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/hibernate-search-3.1.1.GA.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/hibernate-tools-3.2.0.beta11.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/hibernate-validator-3.1.0.GA.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/ipython-1.2.1.tar.gz
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/ivy-2.4.0.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/omero-icemock-3.5.1.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/omero-icemock-3.6.3.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/omero.java
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/oro-2.0.8.jar
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/lib/repository/scons-local-2.1.0.zip
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/3-3-2_rgb.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/fire.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/glasbey.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/glasbey_inverted.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/glow.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/grays.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ice.lut
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/janelia/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/janelia/pup_br.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/janelia/pup_nr.lut
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/16_colors.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/5_ramps.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/6_shades.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/blue_orange_icb.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/brgbcmyw.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/cool.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/edges.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/gem.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/phase.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/royal.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/sepia.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/smart.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/thal.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/thallium.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/ncsa_paledit/unionjack.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/physics.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/red-green.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/spectrum.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/thermal.lut
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/cyan_hot.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/green_fire_blue.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/hilo.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/ica.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/ica2.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/ica3.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/magenta_hot.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/orange_hot.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/rainbow_rgb.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/red_hot.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/luts/wcif/yellow_hot.lut
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/omero.class
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/setup.cfg
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/README.txt
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/misc/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/misc/Makefile
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/misc/current.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/misc/enums.py
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__1/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__10/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__11/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__2/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__3/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__4/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__5/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__6/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__7/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__8/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__9/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__4/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__5/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__6/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__7/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.1__0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/t/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.3__0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.4__0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4__0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.0__0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__1/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__2/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__3/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:03:40 creating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/schema.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/views.sql
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/test.xml
01:03:40 inflating: openmicroscopy-5.6.3-435-c696c9b734-ice36/update_dependencies.sh
01:03:40 extracting: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/antlib/resources/gitversion.xml
01:03:40 extracting: openmicroscopy-5.6.3-435-c696c9b734-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake
01:03:40 + rm -f openmicroscopy-5.6.3-435-c696c9b734-ice36.zip
01:03:40 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-435-c696c9b734-ice36 /home/omero/workspace/OMERO-training/openmicroscopy
01:03:40 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
01:03:40 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
01:03:40 ++ ls OMERO.server-5.6.3-435-c696c9b734-ice36.zip
01:03:40 + ZIP=OMERO.server-5.6.3-435-c696c9b734-ice36.zip
01:03:40 + DIST=OMERO.server-5.6.3-435-c696c9b734-ice36
01:03:40 + unzip -n OMERO.server-5.6.3-435-c696c9b734-ice36.zip
01:03:40 Archive: OMERO.server-5.6.3-435-c696c9b734-ice36.zip
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/blitz/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/grid/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/profiles/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/error/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/luts/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/luts/janelia/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/luts/ncsa_paledit/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/luts/wcif/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/analysis_scripts/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/annotation_scripts/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/export_scripts/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/figure_scripts/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/import_scripts/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/scripts/omero/util_scripts/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/misc/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__1/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__10/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__11/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__2/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__3/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__4/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__5/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__6/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__7/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__8/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__9/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__4/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__5/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__6/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__7/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.1__0/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/t/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.3__0/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.4__0/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4__0/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.0__0/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__1/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__2/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__3/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/
01:03:40 creating: OMERO.server-5.6.3-435-c696c9b734-ice36/var/
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/LICENSE.txt
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/backup.cfg
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/blitz/mail-senders.example
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/blitz/mail-server.example
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/build.properties
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/env.bat
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/env.sh
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/hibernate.properties
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/ice.config
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/logback-cli.xml
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/logback-indexing-cli.xml
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/logback-indexing.xml
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/logback.xml
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/mime.types
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/node1.cfg
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/node2.cfg
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/omero.properties
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/profiles/psql
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/rollover.cfg
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/Windows.cfg
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/error/maintainance.html
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/README
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/default.xml
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/templates.xml
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/grid/windefault.xml
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/ice.config
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/internal.cfg
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/master.cfg
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/templates/robot.template
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/etc/testdropbox.config
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/history.rst
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/OMEZarrReader.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/activation.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/aggdesigner-algorithm.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/aircompressor.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/annotations.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/antlr.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/aopalliance.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/avatica-core.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/avatica-metrics.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/base.jar
01:03:40 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-all.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-anim.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-awt-util.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-bridge.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-codec.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-constants.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-css.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-dom.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-ext.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-extension.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-gui-util.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-gvt.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-i18n.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-parser.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-rasterizer-ext.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-rasterizer.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-script.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-slideshow.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-squiggle-ext.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-squiggle.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svg-dom.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svgbrowser.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svggen.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svgpp.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-svgrasterizer.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-swing.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-transcoder.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-ttf2svg.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-util.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/batik-xml.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/btm.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/bufr.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/c3p0.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/calcite-core.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/calcite-linq4j.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/cdm-core.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/checker-qual.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-beanutils.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-codec.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-collections.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-collections4.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-compiler.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-dbcp2.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-io.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-lang.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-lang3.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-logging.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/commons-pool2.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/dom4j.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/ehcache.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/error_prone_annotations.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/esri-geometry-api.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/failureaccess.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/filters.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/fontbox.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/formats-api.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/formats-bsd.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/formats-gpl.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/glacier2.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/google-http-client-xml.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/google-http-client.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/guava.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/hamcrest-core.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/hazelcast-all.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/hibernate-commons-annotations.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/hibernate-core.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/hibernate-jpa-2.0-api.jar
01:03:41 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/client/hibernate-search-analyzers.jar
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01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-core.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-expression.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-jdbc.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-jms.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-ldap-core.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-messaging.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-orm.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-security-core.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-security-ldap.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/spring-tx.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/sqlite-jdbc.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/subethasmtp.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/turbojpeg.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/udunits.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/xalan.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/xercesImpl.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/xml-apis-ext.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/xml-apis.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/xmlgraphics-commons.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/xmpcore.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/lib/server/xpp3.jar
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/README
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/agpl.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/antlr.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/apache-v1.1.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/apache-v2.0.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/asm.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/bouncy_castle_license.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/bsd.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/cddl-v1.0.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/cpl-v10.html
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/crystalclear.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/django.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/dom4j.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/epl-v1.0.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/fbsd.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/freemarker.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/gpl-v2.0.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/gpl.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/gtest.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/iconsweets_license.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/jamon.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/jmock.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/jquery.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/jtidy.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/lgpl-3.0.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/lgpl-v2.0.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/lgpl-v2.1.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/lgpl-v3.0.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/lgpl.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/matplotlib.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/mit.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/mpl-v1_0.htm
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/npl-1_1.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/path.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/pil.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/postgresql.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/psf-v2.0.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/psf-v2.5.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/scons.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/slf4j.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/tablelayout.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/which.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/zlib-libpng.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/share/licenses/zpl-v2.1.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/README.txt
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/misc/Makefile
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/misc/current.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/misc/enums.py
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/schema.sql
01:03:43 inflating: OMERO.server-5.6.3-435-c696c9b734-ice36/sql/psql/OMERO5.4__0/views.sql
01:03:43 + rm -f OMERO.server-5.6.3-435-c696c9b734-ice36.zip
01:03:43 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-435-c696c9b734-ice36 /home/omero/workspace/OMERO-training/OMERO.server
01:03:43 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
01:03:43 ++ deactivate nondestructive
01:03:43 ++ '[' -n '' ']'
01:03:43 ++ '[' -n '' ']'
01:03:43 ++ '[' -n /bin/bash -o -n '' ']'
01:03:43 ++ hash -r
01:03:43 ++ '[' -n '' ']'
01:03:43 ++ unset VIRTUAL_ENV
01:03:43 ++ '[' '!' nondestructive = nondestructive ']'
01:03:43 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
01:03:43 ++ export VIRTUAL_ENV
01:03:43 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:43 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:43 ++ export PATH
01:03:43 ++ '[' -n '' ']'
01:03:43 ++ '[' -z '' ']'
01:03:43 ++ _OLD_VIRTUAL_PS1=
01:03:43 ++ PS1='(.venv3) '
01:03:43 ++ export PS1
01:03:43 ++ '[' -n /bin/bash -o -n '' ']'
01:03:43 ++ hash -r
01:03:43 + for x in *.gz
01:03:43 + pip install omero-dropbox-5.6.3.dev0.tar.gz
01:03:44 Processing ./omero-dropbox-5.6.3.dev0.tar.gz
01:03:44 Installing build dependencies: started
01:03:45 Installing build dependencies: finished with status 'done'
01:03:45 Getting requirements to build wheel: started
01:03:46 Getting requirements to build wheel: finished with status 'done'
01:03:46 Installing backend dependencies: started
01:03:47 Installing backend dependencies: finished with status 'done'
01:03:47 Preparing metadata (pyproject.toml): started
01:03:47 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:47 Collecting omero-py (from omero-dropbox==5.6.3.dev0)
01:03:47 Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB)
01:03:47 Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:47 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
01:03:47 Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:47 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:03:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
01:03:47 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
01:03:47 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:47 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
01:03:48 Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:48 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:03:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
01:03:48 Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:48 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
01:03:48 Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:48 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
01:03:48 Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
01:03:48 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
01:03:48 Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
01:03:48 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
01:03:48 Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
01:03:48 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
01:03:48 Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB)
01:03:48 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
01:03:48 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
01:03:48 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:03:48 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
01:03:48 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
01:03:48 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
01:03:48 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
01:03:48 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
01:03:48 Using cached idna-3.6-py3-none-any.whl (61 kB)
01:03:48 Building wheels for collected packages: omero-dropbox
01:03:48 Building wheel for omero-dropbox (pyproject.toml): started
01:03:48 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:03:48 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=dab29b9116218ee7f21682f5380995b1e90d9dbd4dcd98410cbaf06e93afe1f6
01:03:48 Stored in directory: /home/omero/.cache/pip/wheels/70/da/3d/331719007048e84a6ccfa834fcb865d58e6f5e47143b222b43
01:03:48 Successfully built omero-dropbox
01:03:49 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox
01:03:52 Successfully installed Pillow-10.2.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-dropbox-5.6.3.dev0 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
01:03:52 + for x in *.gz
01:03:52 + pip install omero_marshal-0.9.1.dev0.tar.gz
01:03:52 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:03:52 Installing build dependencies: started
01:03:54 Installing build dependencies: finished with status 'done'
01:03:54 Getting requirements to build wheel: started
01:03:55 Getting requirements to build wheel: finished with status 'done'
01:03:55 Installing backend dependencies: started
01:03:57 Installing backend dependencies: finished with status 'done'
01:03:57 Preparing metadata (pyproject.toml): started
01:03:57 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:57 Building wheels for collected packages: omero_marshal
01:03:57 Building wheel for omero_marshal (pyproject.toml): started
01:03:58 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:03:58 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=ee444ae23f90531dfa3854e18b656e2d2ec5c03af15511de9a231f673ce721e7
01:03:58 Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35
01:03:58 Successfully built omero_marshal
01:03:59 Installing collected packages: omero_marshal
01:03:59 Successfully installed omero_marshal-0.9.1.dev0
01:03:59 + for x in *.gz
01:03:59 + pip install omero-py-5.19.1.dev0.tar.gz
01:03:59 Processing ./omero-py-5.19.1.dev0.tar.gz
01:04:00 Installing build dependencies: started
01:04:01 Installing build dependencies: finished with status 'done'
01:04:01 Getting requirements to build wheel: started
01:04:02 Getting requirements to build wheel: finished with status 'done'
01:04:02 Installing backend dependencies: started
01:04:03 Installing backend dependencies: finished with status 'done'
01:04:03 Preparing metadata (pyproject.toml): started
01:04:03 Preparing metadata (pyproject.toml): finished with status 'done'
01:04:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18)
01:04:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4)
01:04:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0)
01:04:03 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4)
01:04:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0)
01:04:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1)
01:04:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5)
01:04:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0)
01:04:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2)
01:04:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2)
01:04:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6)
01:04:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2)
01:04:03 Building wheels for collected packages: omero-py
01:04:03 Building wheel for omero-py (pyproject.toml): started
01:04:04 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:04:04 Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781647 sha256=a63d544cbdabc17a42c356ca598a89c3be9bdfed4be0046900f4431c6a43df66
01:04:04 Stored in directory: /home/omero/.cache/pip/wheels/0f/f4/17/8aed7bcc59ee680e04154ad77e9d7c203954875e9f0e1940d5
01:04:04 Successfully built omero-py
01:04:04 Installing collected packages: omero-py
01:04:04 Attempting uninstall: omero-py
01:04:04 Found existing installation: omero-py 5.19.0
01:04:04 Uninstalling omero-py-5.19.0:
01:04:05 Successfully uninstalled omero-py-5.19.0
01:04:07 Successfully installed omero-py-5.19.1.dev0
01:04:07 + for x in *.gz
01:04:07 + pip install omero-scripts-5.8.1.dev0.tar.gz
01:04:08 Processing ./omero-scripts-5.8.1.dev0.tar.gz
01:04:08 Installing build dependencies: started
01:04:10 Installing build dependencies: finished with status 'done'
01:04:10 Getting requirements to build wheel: started
01:04:10 Getting requirements to build wheel: finished with status 'done'
01:04:10 Installing backend dependencies: started
01:04:11 Installing backend dependencies: finished with status 'done'
01:04:11 Preparing metadata (pyproject.toml): started
01:04:11 Preparing metadata (pyproject.toml): finished with status 'done'
01:04:11 Building wheels for collected packages: omero-scripts
01:04:11 Building wheel for omero-scripts (pyproject.toml): started
01:04:11 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:04:11 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=17f5040dd353511ad64dbb14f0d3f30331022e665c1bd07fcf22406165057272
01:04:11 Stored in directory: /home/omero/.cache/pip/wheels/bf/20/bf/f0e89c5f6fcd6f4ff1c089bc6b449e017b94b2f6b6c2593196
01:04:11 Successfully built omero-scripts
01:04:11 Installing collected packages: omero-scripts
01:04:12 Successfully installed omero-scripts-5.8.1.dev0
01:04:12 + for x in *.gz
01:04:12 + pip install omero-web-5.25.1.dev0.tar.gz
01:04:12 Processing ./omero-web-5.25.1.dev0.tar.gz
01:04:13 Installing build dependencies: started
01:04:14 Installing build dependencies: finished with status 'done'
01:04:14 Getting requirements to build wheel: started
01:04:15 Getting requirements to build wheel: finished with status 'done'
01:04:15 Installing backend dependencies: started
01:04:16 Installing backend dependencies: finished with status 'done'
01:04:16 Preparing metadata (pyproject.toml): started
01:04:16 Preparing metadata (pyproject.toml): finished with status 'done'
01:04:16 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0)
01:04:16 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
01:04:16 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:04:16 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
01:04:16 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
01:04:16 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
01:04:16 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
01:04:17 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
01:04:17 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:04:17 Collecting django-csp (from omero-web==5.25.1.dev0)
01:04:17 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:04:17 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
01:04:17 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
01:04:17 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
01:04:17 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
01:04:17 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
01:04:17 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
01:04:17 Collecting pytz (from omero-web==5.25.1.dev0)
01:04:17 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
01:04:17 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
01:04:17 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
01:04:17 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
01:04:17 Using cached asgiref-3.7.2-py3-none-any.whl.metadata (9.2 kB)
01:04:17 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
01:04:17 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
01:04:17 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
01:04:17 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
01:04:17 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
01:04:17 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
01:04:17 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
01:04:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
01:04:17 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
01:04:17 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
01:04:17 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
01:04:17 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
01:04:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
01:04:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
01:04:17 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:04:17 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
01:04:17 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:04:17 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
01:04:18 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
01:04:18 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
01:04:18 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:04:18 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
01:04:18 Using cached asgiref-3.7.2-py3-none-any.whl (24 kB)
01:04:18 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
01:04:18 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
01:04:18 Building wheels for collected packages: omero-web
01:04:18 Building wheel for omero-web (pyproject.toml): started
01:04:19 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:04:19 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2769827 sha256=ac412a3378793e3abd02ba8e6431e666139c73aa3f8f9aa9cadaf285a7fc4baa
01:04:19 Stored in directory: /home/omero/.cache/pip/wheels/27/e6/a8/3c62891eccbd4759036a66343d82d7ebc8ff45e9a0976cd8c7
01:04:19 Successfully built omero-web
01:04:20 Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
01:04:23 Successfully installed Django-4.2.11 asgiref-3.7.2 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
01:04:23 + cd /home/omero/workspace/OMERO-training/OMERO.server
01:04:23 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
01:04:23 + HOSTNAME=7ef93461c40d
01:04:23 + PORT=4064
01:04:23 + WEBHOST=http://nginx/web
01:04:23 + SERVER_NAME=omero
01:04:23 + ROOT_PASSWORD=omero
01:04:23 + GROUP_NAME=training_group
01:04:23 + GROUP_NAME_2=training_group-2
01:04:23 + USER_NAME=training_user
01:04:23 + USER_NAME_2=training_user-2
01:04:23 + LIGHTADMIN_USER_NAME=ladmin_user
01:04:23 + USER_PASSWORD=ome
01:04:23 + CONFIG_FILENAME=training_ice.config
01:04:23 + omero login root@7ef93461c40d:4064 -w omero
01:04:24 Created session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:25 + omero group add training_group --type read-only --ignore-existing
01:04:26 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:26 Group exists: training_group (id=3)
01:04:26 + omero group add training_group-2 --type read-only --ignore-existing
01:04:27 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:27 Group exists: training_group-2 (id=4)
01:04:27 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
01:04:28 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:28 User exists: training_user (id=2)
01:04:29 + omero user joingroup --name training_user --group-name training_group training_group-2
01:04:29 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:29 2 is already in group 3
01:04:29 2 is already in group 4
01:04:30 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
01:04:31 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:31 User exists: training_user-2 (id=3)
01:04:31 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
01:04:32 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:32 3 is already in group 3
01:04:32 3 is already in group 4
01:04:32 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
01:04:33 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:33 User exists: ladmin_user (id=4)
01:04:34 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
01:04:35 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:35 4 is already in group 3
01:04:35 4 is already in group 4
01:04:35 ++ omero user info ladmin_user --style plain
01:04:35 ++ cut -d, -f1
01:04:36 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:37 + id=4
01:04:37 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
01:04:38 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
01:04:38 Experimenter:4
01:04:38 + omero logout
01:04:39 + touch test.fake
01:04:39 + omero login training_user@7ef93461c40d:4064 -w ome -g training_group
01:04:40 Created session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:04:41 + nProjects=1
01:04:41 + nDatasets=2
01:04:41 + echo 'Creating projects and datasets'
01:04:41 Creating projects and datasets
01:04:41 + (( i=1 ))
01:04:41 + (( i<=1 ))
01:04:41 ++ omero obj new Project 'name=Project 1'
01:04:42 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:04:42 + project=Project:51
01:04:42 + (( j=1 ))
01:04:42 + (( j<=2 ))
01:04:42 ++ omero obj new Dataset 'name=Dataset 1-1'
01:04:43 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:04:44 + dataset=Dataset:51
01:04:44 + omero obj new ProjectDatasetLink parent=Project:51 child=Dataset:51
01:04:45 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:04:45 ProjectDatasetLink:51
01:04:45 + echo 'Importing image into dataset'
01:04:45 Importing image into dataset
01:04:45 + omero import -d Dataset:51 test.fake --debug ERROR
01:04:46 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:04:47 2024-03-17 01:04:47,380 431 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:04:47 2024-03-17 01:04:47,406 457 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 7cac3a884e273a6ba8487f633eee5f5131154ae1 date: 17 March 2024
01:04:55 Image:51
01:04:55 Other imported objects:
01:04:55 Fileset:51
01:04:55
01:04:55 ==> Summary
01:04:55 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:05.141
01:04:55 + (( j++ ))
01:04:55 + (( j<=2 ))
01:04:55 ++ omero obj new Dataset 'name=Dataset 1-2'
01:04:56 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:04:56 + dataset=Dataset:52
01:04:56 + omero obj new ProjectDatasetLink parent=Project:51 child=Dataset:52
01:04:57 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:04:57 ProjectDatasetLink:52
01:04:58 + echo 'Importing image into dataset'
01:04:58 Importing image into dataset
01:04:58 + omero import -d Dataset:52 test.fake --debug ERROR
01:04:59 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:04:59 2024-03-17 01:04:59,731 308 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:04:59 2024-03-17 01:04:59,753 330 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 7cac3a884e273a6ba8487f633eee5f5131154ae1 date: 17 March 2024
01:05:03 Image:52
01:05:03 Other imported objects:
01:05:03 Fileset:52
01:05:03
01:05:03 ==> Summary
01:05:03 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.800
01:05:03 + (( j++ ))
01:05:03 + (( j<=2 ))
01:05:03 + (( i++ ))
01:05:03 + (( i<=1 ))
01:05:03 + (( j=1 ))
01:05:03 + (( j<=2 ))
01:05:03 + omero obj new Dataset 'name=Orphaned dataset 1'
01:05:04 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:04 Dataset:53
01:05:04 + (( j++ ))
01:05:04 + (( j<=2 ))
01:05:04 + omero obj new Dataset 'name=Orphaned dataset 2'
01:05:05 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:05 Dataset:54
01:05:05 + (( j++ ))
01:05:05 + (( j<=2 ))
01:05:05 + echo 'Importing image file'
01:05:05 Importing image file
01:05:05 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:05:05 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:05:12 ++ sed -n -e 's/^Image://p' image_import.log
01:05:12 + imageid=53
01:05:12 ++ omero obj new MapAnnotation
01:05:13 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:13 + MAP=MapAnnotation:51
01:05:13 + omero obj map-set MapAnnotation:51 mapValue testkey testvalue
01:05:14 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:16 MapAnnotation:51
01:05:16 + omero obj new ImageAnnotationLink parent=Image:53 child=MapAnnotation:51
01:05:17 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:17 ImageAnnotationLink:51
01:05:18 ++ omero obj new Screen name=Screen
01:05:19 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:19 + screen=Screen:51
01:05:19 ++ omero obj new Plate name=Plate
01:05:20 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:21 + plate=Plate:51
01:05:21 + omero obj new ScreenPlateLink parent=Screen:51 child=Plate:51
01:05:22 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:22 ScreenPlateLink:51
01:05:22 + echo 'Importing SPW file'
01:05:22 Importing SPW file
01:05:22 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:05:22 + omero import -r Screen:51 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:05:31 ++ sed -n -e 's/^Plate://p' plate_import.log
01:05:31 + plateid=52
01:05:31 + omero logout
01:05:32 + omero login training_user-2@7ef93461c40d:4064 -w ome -g training_group
01:05:33 Created session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:33 + omero obj new Project 'name=Project 0'
01:05:34 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:35 Project:52
01:05:35 + omero obj new Dataset 'name=Dataset 0'
01:05:36 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:36 Dataset:55
01:05:36 + omero import test.fake --debug ERROR
01:05:37 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:38 2024-03-17 01:05:38,712 365 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:05:38 2024-03-17 01:05:38,732 385 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 7cac3a884e273a6ba8487f633eee5f5131154ae1 date: 17 March 2024
01:05:41 Image:57
01:05:41 Other imported objects:
01:05:41 Fileset:55
01:05:41
01:05:41 ==> Summary
01:05:41 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.173
01:05:42 + omero obj new Screen name=Screen
01:05:43 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:43 Screen:52
01:05:43 + omero obj new Plate name=Plate
01:05:44 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
01:05:44 Plate:53
01:05:44 + omero login training_user@7ef93461c40d:4064 -w ome -g training_group-2
01:05:45 Created session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:45 + omero obj new Project 'name=Project 0'
01:05:46 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:46 Project:53
01:05:47 + omero obj new Dataset 'name=Dataset 0'
01:05:48 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:48 Dataset:56
01:05:48 + omero import test.fake --debug ERROR
01:05:49 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:50 2024-03-17 01:05:50,076 337 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:05:50 2024-03-17 01:05:50,097 358 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 7cac3a884e273a6ba8487f633eee5f5131154ae1 date: 17 March 2024
01:05:52 Image:58
01:05:52 Other imported objects:
01:05:52 Fileset:56
01:05:52
01:05:52 ==> Summary
01:05:52 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.030
01:05:52 + omero obj new Screen name=Screen
01:05:54 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:54 Screen:53
01:05:54 + omero obj new Plate name=Plate
01:05:55 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:55 Plate:54
01:05:55 + omero logout
01:05:57 + echo omero.host=7ef93461c40d
01:05:57 + echo omero.port=4064
01:05:57 + echo omero.webhost=http://nginx/web
01:05:57 + echo omero.servername=omero
01:05:57 + echo omero.user=training_user
01:05:57 + echo omero.pass=ome
01:05:57 + echo omero.group=training_group
01:05:57 + echo omero.projectid=51
01:05:57 + echo omero.datasetid=52
01:05:57 + echo omero.imageid=53
01:05:57 + echo omero.plateid=52
01:05:57 + echo omero.screenid=51
01:05:57 + echo omero.group2=training_group-2
01:05:57 + echo omero.ladmin=ladmin_user
01:05:57 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:05:57 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
01:05:57 + omero sessions clear
01:05:58 1 session(s) cleared
01:05:58 !! 03/17/24 01:05:58.767 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:05:58 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:05:58 + pip install --upgrade requests
01:05:59 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0)
01:05:59 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2)
01:05:59 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.6)
01:05:59 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18)
01:05:59 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2)
01:05:59 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
01:06:18 Running training suite
01:06:18 created 20 shapes
01:06:18 retrieved 20 shapes in 4 batches
01:06:18 Current user:
01:06:18 ID: 2
01:06:18 Username: training_user
01:06:18 Full Name: training_user training_user
01:06:18 Is Admin: False
01:06:18 []
01:06:18 Member of:
01:06:18 ID: 3 Name: training_group
01:06:18 ID: 4 Name: training_group-2
01:06:18 Current group: training_group
01:06:18 Group owners:
01:06:18 Group members:
01:06:18 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
01:06:18 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:06:18 ID: 2 UserName: training_user Name: training_user training_user
01:06:18 Owner of:
01:06:18 Admins:
01:06:18 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:06:18 ID: 0 UserName: root Name: root root
01:06:18 Created new Image:59 Name:"numpy image"
01:06:18 newPlane for z,t: 0 0 uint8 0 127
01:06:18 newPlane for z,t: 0 1 uint8 0 127
01:06:18 newPlane for z,t: 0 2 uint8 0 127
01:06:18 newPlane for z,t: 0 3 uint8 0 127
01:06:18 newPlane for z,t: 0 4 uint8 0 127
01:06:18 newPlane for z,t: 0 5 uint8 0 127
01:06:18 newPlane for z,t: 0 6 uint8 0 127
01:06:18 newPlane for z,t: 0 7 uint8 0 127
01:06:18 newPlane for z,t: 0 8 uint8 0 127
01:06:18 newPlane for z,t: 0 9 uint8 0 127
01:06:18 newPlane for z,t: 1 0 uint8 0 127
01:06:18 newPlane for z,t: 1 1 uint8 0 127
01:06:18 newPlane for z,t: 1 2 uint8 0 127
01:06:18 newPlane for z,t: 1 3 uint8 0 127
01:06:18 newPlane for z,t: 1 4 uint8 0 127
01:06:18 newPlane for z,t: 1 5 uint8 0 127
01:06:18 newPlane for z,t: 1 6 uint8 0 127
01:06:18 newPlane for z,t: 1 7 uint8 0 127
01:06:18 newPlane for z,t: 1 8 uint8 0 127
01:06:18 newPlane for z,t: 1 9 uint8 0 127
01:06:18 newPlane for z,t: 2 0 uint8 0 127
01:06:18 newPlane for z,t: 2 1 uint8 0 127
01:06:18 newPlane for z,t: 2 2 uint8 0 127
01:06:18 newPlane for z,t: 2 3 uint8 0 127
01:06:18 newPlane for z,t: 2 4 uint8 0 127
01:06:18 newPlane for z,t: 2 5 uint8 0 127
01:06:18 newPlane for z,t: 2 6 uint8 0 127
01:06:18 newPlane for z,t: 2 7 uint8 0 127
01:06:18 newPlane for z,t: 2 8 uint8 0 127
01:06:18 newPlane for z,t: 2 9 uint8 0 127
01:06:18 newPlane for z,t: 3 0 uint8 0 127
01:06:18 newPlane for z,t: 3 1 uint8 0 127
01:06:18 newPlane for z,t: 3 2 uint8 0 127
01:06:18 newPlane for z,t: 3 3 uint8 0 127
01:06:18 newPlane for z,t: 3 4 uint8 0 127
01:06:18 newPlane for z,t: 3 5 uint8 0 127
01:06:18 newPlane for z,t: 3 6 uint8 0 127
01:06:18 newPlane for z,t: 3 7 uint8 0 127
01:06:18 newPlane for z,t: 3 8 uint8 0 127
01:06:18 newPlane for z,t: 3 9 uint8 0 127
01:06:18 newPlane for z,t: 4 0 uint8 0 127
01:06:18 newPlane for z,t: 4 1 uint8 0 127
01:06:18 newPlane for z,t: 4 2 uint8 0 127
01:06:18 newPlane for z,t: 4 3 uint8 0 127
01:06:18 newPlane for z,t: 4 4 uint8 0 127
01:06:18 newPlane for z,t: 4 5 uint8 0 127
01:06:18 newPlane for z,t: 4 6 uint8 0 127
01:06:18 newPlane for z,t: 4 7 uint8 0 127
01:06:18 newPlane for z,t: 4 8 uint8 0 127
01:06:18 newPlane for z,t: 4 9 uint8 0 127
01:06:18 Deleting, please wait.
01:06:18 Error? False
01:06:18 53 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:06:18 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2024-03/17/01-05-09.698/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:06:18 1
01:06:18 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2024-03/17/01-05-09.698/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:06:18 Current group: training_group
01:06:18 Permissions: READ-ONLY (rwr---)
01:06:18 Project 1 Owner: training_user training_user
01:06:18 Project 1 Owner: training_user training_user
01:06:18 Project 0 Owner: training_user-2 training_user-2
01:06:18 Project 0 Owner: training_user-2 training_user-2
01:06:18 Image: <_ImageWrapper id=53>
01:06:18 Image: <_ImageWrapper id=53> Group: training_group 3
01:06:18 Image: <_ImageWrapper id=53> Channel: 0
01:06:18 Channel: 1
01:06:18 Channel: 2
01:06:18
01:06:18
01:06:18 original_metadata
01:06:18 global_metadata
01:06:18 series_metadata
01:06:18
01:06:18 Plane at zct: 0 0 0
01:06:18 [[ 0 0 0 ... 253 254 255]
01:06:18 [ 0 0 0 ... 253 254 255]
01:06:18 [ 0 0 0 ... 253 254 255]
01:06:18 ...
01:06:18 [ 0 1 2 ... 253 254 255]
01:06:18 [ 0 1 2 ... 253 254 255]
01:06:18 [ 0 1 2 ... 253 254 255]]
01:06:18 shape: (512, 512)
01:06:18 min: 0 max: 255 pixel type: uint8
01:06:18
01:06:18 Z stack of tiles:
01:06:18 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:06:18 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:06:18 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:06:18 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:06:18 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:06:18
01:06:18 Hyper stack of planes:
01:06:18 plane zct: (2, 0, 0) min: 0 max: 255
01:06:18 plane zct: (2, 0, 1) min: 0 max: 255
01:06:18 plane zct: (2, 0, 2) min: 0 max: 255
01:06:18 plane zct: (2, 0, 3) min: 0 max: 255
01:06:18 plane zct: (2, 0, 4) min: 0 max: 255
01:06:18 plane zct: (2, 0, 5) min: 0 max: 255
01:06:18 plane zct: (2, 0, 6) min: 0 max: 255
01:06:18 plane zct: (2, 0, 7) min: 0 max: 255
01:06:18 plane zct: (2, 0, 8) min: 0 max: 255
01:06:18 plane zct: (2, 0, 9) min: 0 max: 255
01:06:18 plane zct: (2, 1, 0) min: 0 max: 255
01:06:18 plane zct: (2, 1, 1) min: 0 max: 255
01:06:18 plane zct: (2, 1, 2) min: 0 max: 255
01:06:18 plane zct: (2, 1, 3) min: 0 max: 255
01:06:18 plane zct: (2, 1, 4) min: 0 max: 255
01:06:18 plane zct: (2, 1, 5) min: 0 max: 255
01:06:18 plane zct: (2, 1, 6) min: 0 max: 255
01:06:18 plane zct: (2, 1, 7) min: 0 max: 255
01:06:18 plane zct: (2, 1, 8) min: 0 max: 255
01:06:18 plane zct: (2, 1, 9) min: 0 max: 255
01:06:18 plane zct: (2, 2, 0) min: 0 max: 255
01:06:18 plane zct: (2, 2, 1) min: 0 max: 255
01:06:18 plane zct: (2, 2, 2) min: 0 max: 255
01:06:18 plane zct: (2, 2, 3) min: 0 max: 255
01:06:18 plane zct: (2, 2, 4) min: 0 max: 255
01:06:18 plane zct: (2, 2, 5) min: 0 max: 255
01:06:18 plane zct: (2, 2, 6) min: 0 max: 255
01:06:18 plane zct: (2, 2, 7) min: 0 max: 255
01:06:18 plane zct: (2, 2, 8) min: 0 max: 255
01:06:18 plane zct: (2, 2, 9) min: 0 max: 255
01:06:18 plane zct: (3, 0, 0) min: 0 max: 255
01:06:18 plane zct: (3, 0, 1) min: 0 max: 255
01:06:18 plane zct: (3, 0, 2) min: 0 max: 255
01:06:18 plane zct: (3, 0, 3) min: 0 max: 255
01:06:18 plane zct: (3, 0, 4) min: 0 max: 255
01:06:18 plane zct: (3, 0, 5) min: 0 max: 255
01:06:18 plane zct: (3, 0, 6) min: 0 max: 255
01:06:18 plane zct: (3, 0, 7) min: 0 max: 255
01:06:18 plane zct: (3, 0, 8) min: 0 max: 255
01:06:18 plane zct: (3, 0, 9) min: 0 max: 255
01:06:18 plane zct: (3, 1, 0) min: 0 max: 255
01:06:18 plane zct: (3, 1, 1) min: 0 max: 255
01:06:18 plane zct: (3, 1, 2) min: 0 max: 255
01:06:18 plane zct: (3, 1, 3) min: 0 max: 255
01:06:18 plane zct: (3, 1, 4) min: 0 max: 255
01:06:18 plane zct: (3, 1, 5) min: 0 max: 255
01:06:18 plane zct: (3, 1, 6) min: 0 max: 255
01:06:18 plane zct: (3, 1, 7) min: 0 max: 255
01:06:18 plane zct: (3, 1, 8) min: 0 max: 255
01:06:18 plane zct: (3, 1, 9) min: 0 max: 255
01:06:18 plane zct: (3, 2, 0) min: 0 max: 255
01:06:18 plane zct: (3, 2, 1) min: 0 max: 255
01:06:18 plane zct: (3, 2, 2) min: 0 max: 255
01:06:18 plane zct: (3, 2, 3) min: 0 max: 255
01:06:18 plane zct: (3, 2, 4) min: 0 max: 255
01:06:18 plane zct: (3, 2, 5) min: 0 max: 255
01:06:18 plane zct: (3, 2, 6) min: 0 max: 255
01:06:18 plane zct: (3, 2, 7) min: 0 max: 255
01:06:18 plane zct: (3, 2, 8) min: 0 max: 255
01:06:18 plane zct: (3, 2, 9) min: 0 max: 255
01:06:18 plane zct: (4, 0, 0) min: 0 max: 255
01:06:18 plane zct: (4, 0, 1) min: 0 max: 255
01:06:18 plane zct: (4, 0, 2) min: 0 max: 255
01:06:18 plane zct: (4, 0, 3) min: 0 max: 255
01:06:18 plane zct: (4, 0, 4) min: 0 max: 255
01:06:18 plane zct: (4, 0, 5) min: 0 max: 255
01:06:18 plane zct: (4, 0, 6) min: 0 max: 255
01:06:18 plane zct: (4, 0, 7) min: 0 max: 255
01:06:18 plane zct: (4, 0, 8) min: 0 max: 255
01:06:18 plane zct: (4, 0, 9) min: 0 max: 255
01:06:18 plane zct: (4, 1, 0) min: 0 max: 255
01:06:18 plane zct: (4, 1, 1) min: 0 max: 255
01:06:18 plane zct: (4, 1, 2) min: 0 max: 255
01:06:18 plane zct: (4, 1, 3) min: 0 max: 255
01:06:18 plane zct: (4, 1, 4) min: 0 max: 255
01:06:18 plane zct: (4, 1, 5) min: 0 max: 255
01:06:18 plane zct: (4, 1, 6) min: 0 max: 255
01:06:18 plane zct: (4, 1, 7) min: 0 max: 255
01:06:18 plane zct: (4, 1, 8) min: 0 max: 255
01:06:18 plane zct: (4, 1, 9) min: 0 max: 255
01:06:18 plane zct: (4, 2, 0) min: 0 max: 255
01:06:18 plane zct: (4, 2, 1) min: 0 max: 255
01:06:18 plane zct: (4, 2, 2) min: 0 max: 255
01:06:18 plane zct: (4, 2, 3) min: 0 max: 255
01:06:18 plane zct: (4, 2, 4) min: 0 max: 255
01:06:18 plane zct: (4, 2, 5) min: 0 max: 255
01:06:18 plane zct: (4, 2, 6) min: 0 max: 255
01:06:18 plane zct: (4, 2, 7) min: 0 max: 255
01:06:18 plane zct: (4, 2, 8) min: 0 max: 255
01:06:18 plane zct: (4, 2, 9) min: 0 max: 255
01:06:20 <string>:150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
01:06:24 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
01:06:24
01:06:24 List Projects:
01:06:24 ==================================================
01:06:24 Project:1 Name:"Project 1" (owner=training_user)
01:06:24 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
01:06:24 Image:1 Name:"test.fake" (owner=training_user)
01:06:24 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
01:06:24 Image:12 Name:"New Image" (owner=training_user)
01:06:24 Image:13 Name:"newImageFrom3" (owner=training_user)
01:06:24 Image:2 Name:"test.fake" (owner=training_user)
01:06:24 Dataset:7 Name:"New Dataset" (owner=training_user)
01:06:24 Dataset:17 Name:"new Name 1" (owner=training_user)
01:06:24 Dataset:18 Name:"new Name 2" (owner=training_user)
01:06:24 Project:51 Name:"Project 1" (owner=training_user)
01:06:24 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
01:06:24 Image:51 Name:"test.fake" (owner=training_user)
01:06:24 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
01:06:24 Image:52 Name:"test.fake" (owner=training_user)
01:06:24
01:06:24 List orphaned Datasets:
01:06:24 ==================================================
01:06:24 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
01:06:24 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
01:06:24 Dataset:16 Name:"MyDataset" (owner=training_user)
01:06:24 Dataset:15 Name:"MyDataset" (owner=training_user)
01:06:24 Dataset:14 Name:"MyDataset" (owner=training_user)
01:06:24 Dataset:13 Name:"FileAnnotationDelete" (owner=training_user)
01:06:24 Dataset:12 Name:"New Dataset2" (owner=training_user)
01:06:24 Dataset:11 Name:"New Dataset" (owner=training_user)
01:06:24 Dataset:10 Name:"MyDataset" (owner=training_user)
01:06:24 Dataset:9 Name:"MyDataset" (owner=training_user)
01:06:24 Dataset:8 Name:"MyDataset" (owner=training_user)
01:06:24 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
01:06:24 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
01:06:24 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
01:06:24 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
01:06:24
01:06:24 Images in Dataset: 52
01:06:24 ==================================================
01:06:24 Image:52 Name:"test.fake" (owner=training_user)
01:06:24
01:06:24 Image:53
01:06:24 ==================================================
01:06:24 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:06:24 X: 512
01:06:24 Y: 512
01:06:24 Z: 5
01:06:24 C: 3
01:06:24 T: 10
01:06:24 Channel: 0 Color: (255, 0, 0)
01:06:24 Lookup table: None
01:06:24 Is reverse intensity? False
01:06:24 Channel: 1 Color: (0, 255, 0)
01:06:24 Lookup table: None
01:06:24 Is reverse intensity? False
01:06:24 Channel: 2 Color: (0, 0, 255)
01:06:24 Lookup table: None
01:06:24 Is reverse intensity? False
01:06:24 Pixel Size X: None
01:06:24
01:06:24 List Screens:
01:06:24 ==================================================
01:06:24 Screen:51 Name:"Screen" (owner=training_user)
01:06:24 Plate:51 Name:"Plate" (owner=training_user)
01:06:24 Plate:52 Name:"Plate Name 0" (owner=training_user)
01:06:24 Screen:1 Name:"Screen" (owner=training_user)
01:06:24 Plate:1 Name:"Plate" (owner=training_user)
01:06:24 Plate:2 Name:"Plate Name 0" (owner=training_user)
01:06:24 Screen:52 Name:"Screen" (owner=training_user-2)
01:06:24 Screen:2 Name:"Screen" (owner=training_user-2)
01:06:24
01:06:24 Plate:52
01:06:24 ==================================================
01:06:24
01:06:24 Number of fields: (0, 0)
01:06:24
01:06:24 Grid size: {'rows': 1, 'columns': 3}
01:06:24
01:06:24 Wells in Plate: Plate Name 0
01:06:24 Well: 0 0 Fields: 1
01:06:24 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 54
01:06:24 Well: 0 1 Fields: 1
01:06:24 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 56
01:06:24 Well: 0 2 Fields: 1
01:06:24 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 55
01:06:24 51 <class 'omero.model.MapAnnotationI'>
01:06:24 added by training_user
01:06:24 Image ID: 53
01:06:24 Annotation ID: 51
01:06:24 53
01:06:24 Channel rendering settings:
01:06:24 Name: 0
01:06:24 Color: FF0000
01:06:24 Active: True
01:06:24 Levels: 0.0 - 255.0
01:06:24 Name: 1
01:06:24 Color: 00FF00
01:06:24 Active: True
01:06:24 Levels: 0.0 - 255.0
01:06:24 Name: 2
01:06:24 Color: 0000FF
01:06:24 Active: True
01:06:24 Levels: 0.0 - 255.0
01:06:24 isGreyscaleRenderingModel: False
01:06:24 Default Z/T positions:
01:06:24 Z = 2, T = 0
01:06:24 Rendering Defs on Image:
01:06:24 ID: 53 (owner: training_user training_user)
01:06:24 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
01:06:24 ROI: ID: 52
01:06:24 Shape: id 71 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
01:06:24 Shape: id 72 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
01:06:24 ROI: ID: 53
01:06:24 Shape: id 73 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
01:06:24 ROI: ID: 54
01:06:24 Shape: id 74 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
01:06:24 ROI: ID: 55
01:06:24 Shape: id 75 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
01:06:24 ROI: ID: 56
01:06:24 <class 'omero.model.PolygonI'> Not supported by this code
01:06:24 Shape: id 76 theT 0 theZ 2 textValue test-Polygon
01:06:24 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
01:06:24 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
01:06:24 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
01:06:24 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
01:06:24 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
01:06:24 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
01:06:24 Removing Shape from ROI...
01:06:24 Deleting ROI: 57
01:06:24 Table Columns:
01:06:24 Uid
01:06:24 MyStringColumnInit
01:06:24 Row count: 10
01:06:24
01:06:24 Get All Data for rows: [3, 5, 7]
01:06:24 Data for Column: Uid
01:06:24 1
01:06:24 2
01:06:24 3
01:06:24 4
01:06:24 5
01:06:24 6
01:06:24 7
01:06:24 8
01:06:24 9
01:06:24 10
01:06:24 Data for Column: MyStringColumnInit
01:06:24 one
01:06:24 two
01:06:24 three
01:06:24 four
01:06:24 five
01:06:24 six
01:06:24 seven
01:06:24 eight
01:06:24 nine
01:06:24 ten
01:06:24
01:06:24 Get All Data for rows with slice: [3, 5, 7]
01:06:24 Data for Column: Uid
01:06:24 4
01:06:24 6
01:06:24 8
01:06:24 Data for Column: MyStringColumnInit
01:06:24 four
01:06:24 six
01:06:24 eight
01:06:24
01:06:24 Get Data for cols: [1] and between rows: 3 - 7
01:06:24 Data for Column: MyStringColumnInit
01:06:24 four
01:06:24 five
01:06:24 six
01:06:24 seven
01:06:24
01:06:24 Get Data for cols: [1] and between rows: 3 - 7 with slice
01:06:24 Data for Column: MyStringColumnInit
01:06:24 four
01:06:24 five
01:06:24 six
01:06:24 seven
01:06:24 Query Results for Column: Uid
01:06:24 3
01:06:24 4
01:06:24 5
01:06:24 6
01:06:24 7
01:06:24 8
01:06:24 Query Results for Column: MyStringColumnInit
01:06:24 three
01:06:24 four
01:06:24 five
01:06:24 six
01:06:24 seven
01:06:24 eight
01:06:24 Opened table with row-count: 10
01:06:24 New dataset, Id: 57
01:06:24 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
01:06:24 55 <class 'omero.model.TagAnnotationI'> added by training_user
01:06:24 Tag value: New Tag
01:06:24 56 <class 'omero.model.MapAnnotationI'> added by training_user
01:06:24
01:06:24 Creating an OriginalFile and FileAnnotation
01:06:24 Attaching FileAnnotation to Dataset: File ID: 57 , README.txt Size: 15
01:06:24
01:06:24 Annotations on Dataset: New Dataset
01:06:24 File ID: 252 README.txt Size: 15
01:06:24
01:06:24 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
01:06:24 File downloaded!
01:06:24 7 README.txt
01:06:24 57 README.txt
01:06:37 Found Annotation with namespace: imperial.training.demo
01:06:37 Plane: 0 0 0
01:06:37 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
01:06:37 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
01:06:37
01:06:37 List Datasets:
01:06:37 ID: 8 Name: MyDataset
01:06:37 ID: 9 Name: MyDataset
01:06:37 ID: 10 Name: MyDataset
01:06:37 ID: 14 Name: MyDataset
01:06:37 ID: 15 Name: MyDataset
01:06:37 ID: 16 Name: MyDataset
01:06:37 ID: 58 Name: MyDataset
01:06:37 ID: 59 Name: MyDataset
01:06:37 ID: 60 Name: MyDataset
01:06:37
01:06:37 List Tags:
01:06:37 ID: 8 Text: MyTag Desc: MyTag 0
01:06:37 ID: 9 Text: MyTag Desc: MyTag 1
01:06:37 ID: 10 Text: MyTag Desc: MyTag 2
01:06:37 ID: 16 Text: MyTag Desc: MyTag 0
01:06:37 ID: 17 Text: MyTag Desc: MyTag 1
01:06:37 ID: 18 Text: MyTag Desc: MyTag 2
01:06:37 ID: 58 Text: MyTag Desc: MyTag 0
01:06:37 ID: 59 Text: MyTag Desc: MyTag 1
01:06:37 ID: 60 Text: MyTag Desc: MyTag 2
01:06:37 New dataset, Id: 61
01:06:37 New dataset 2, Id: 62
01:06:37 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:06:37 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
01:06:37 [[ 0 0 0 ... 102 103 104]
01:06:37 [ 0 0 0 ... 102 103 104]
01:06:37 [ 0 0 0 ... 102 103 104]
01:06:37 ...
01:06:37 [ 5 6 7 ... 102 103 104]
01:06:37 [ 5 6 7 ... 102 103 104]
01:06:37 [ 5 6 7 ... 102 103 104]]
01:06:37 shape: (100, 100)
01:06:37 min: 0 max: 104 pixel type: uint8
01:06:37 Average : 53.9125
01:06:37 Getting data for T, tile: 0 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 1 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 2 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 3 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 4 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 5 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 6 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 7 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 8 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 9 (256.0, 0, 10, 512)
01:06:37 kymograph_data (512, 100)
01:06:37 Attaching kymograph.png to image
01:06:37 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:06:37 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
01:06:37 [[ 0 0 0 ... 102 103 104]
01:06:37 [ 0 0 0 ... 102 103 104]
01:06:37 [ 0 0 0 ... 102 103 104]
01:06:37 ...
01:06:37 [ 5 6 7 ... 102 103 104]
01:06:37 [ 5 6 7 ... 102 103 104]
01:06:37 [ 5 6 7 ... 102 103 104]]
01:06:37 shape: (100, 100)
01:06:37 min: 0 max: 104 pixel type: uint8
01:06:37 Average : 53.9125
01:06:37 Getting data for T, tile: 0 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 1 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 2 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 3 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 4 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 5 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 6 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 7 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 8 (256.0, 0, 10, 512)
01:06:37 Getting data for T, tile: 9 (256.0, 0, 10, 512)
01:06:37 kymograph_data (512, 100)
01:06:37 Attaching kymograph.png to image
01:06:37 No file downloaded. Project not rated.
01:06:37 New image, Id: 62
01:06:37 Starting at: http://nginx/web/api/
01:06:37 CSRF token JVyi9ipujtzazXW4fcja4eICGJU8S9haLX9US9KxQw3XVHCU0rortJJJBJiXmUIJ
01:06:37 Servers:
01:06:37 -id: 1
01:06:37 name: omero
01:06:37 host: omero
01:06:37 port: 4064
01:06:37 -id: 2
01:06:37 name: testintegration
01:06:37 host: testintegration
01:06:37 port: 14064
01:06:37 eventContext {'sessionId': 362, 'sessionUuid': 'f82a9323-8aee-4c12-b94b-a3b3de853b02', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
01:06:37 Projects:
01:06:37 2 Project 0
01:06:37 3 Project 0
01:06:37 Created Project: 56 API TEST foo
01:06:37 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 56, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/56/datasets/'}}
01:06:37 !! 03/17/24 01:06:37.550 error: communicator not destroyed during global destruction.+ deactivate
01:06:37 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:06:37 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:06:37 + export PATH
01:06:37 + unset _OLD_VIRTUAL_PATH
01:06:37 + '[' -n '' ']'
01:06:37 + '[' -n /bin/bash -o -n '' ']'
01:06:37 + hash -r
01:06:37 + '[' -n '' ']'
01:06:37 + unset VIRTUAL_ENV
01:06:37 + '[' '!' '' = nondestructive ']'
01:06:37 + unset -f deactivate
01:06:37 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
01:06:37 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
01:06:41 Note: Some input files use unchecked or unsafe operations.
01:06:41 Note: Recompile with -Xlint:unchecked for details.
01:06:41 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
01:06:48 omero.cmd.Delete2Response@4763c727
01:06:48 omero.cmd.Delete2Response@4ba534b0
01:06:49 one [class java.lang.String] 1.0 [class java.lang.Double]
01:06:49 two [class java.lang.String] 2.0 [class java.lang.Double]
01:06:49 three [class java.lang.String] 3.0 [class java.lang.Double]
01:06:50 -1.0
01:06:50 0
01:06:50 1
01:06:50 2
01:06:56 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
01:06:56 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 4 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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01:06:56 24 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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01:06:56 27 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 28 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 29 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 30 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 31 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 32 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 33 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 34 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 35 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 36 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:56 37 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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01:06:56 Project:51 Project 1
01:06:56 dataset:51 Dataset 1-1
01:06:56 dataset:52 Dataset 1-2
01:06:56 dataset:57 New Dataset
01:06:56 Project:2 Project 0
01:06:56 Project:1 Project 1
01:06:56 dataset:18 new Name 2
01:06:56 dataset:1 Dataset 1-1
01:06:56 dataset:2 Dataset 1-2
01:06:56 dataset:7 New Dataset
01:06:56 dataset:17 new Name 1
01:06:56 Project:52 Project 0
01:06:57 image:52 test.fake
01:06:57 image:63 newImageFrom53
01:06:57 image:62 New Image
01:06:57 5
01:06:57 10
01:06:57 3
01:06:57 512
01:06:57 512
01:06:57 screen:1 Screen
01:06:57 plate:1 Plate
01:06:57 plate:2 Plate Name 0
01:06:57 screen:2 Screen
01:06:57 screen:51 Screen
01:06:57 plate:52 Plate Name 0
01:06:57 plate:51 Plate
01:06:57 screen:52 Screen
01:06:57 well:51
01:06:57 well:53
01:06:57 well:52
01:06:57 plate:53
01:06:57 plate:1
01:06:57 plate:52
01:06:57 plate:51
01:06:57 plate:2
01:06:57 plate:3
01:06:57
01:06:57 List Datasets:
01:06:57 ID: 8 Name: MyDataset
01:06:57 ID: 9 Name: MyDataset
01:06:57 ID: 10 Name: MyDataset
01:06:57 ID: 14 Name: MyDataset
01:06:57 ID: 15 Name: MyDataset
01:06:57 ID: 16 Name: MyDataset
01:06:57 ID: 58 Name: MyDataset
01:06:57 ID: 59 Name: MyDataset
01:06:57 ID: 60 Name: MyDataset
01:06:57 ID: 64 Name: MyDataset
01:06:57
01:06:57 List Tags:
01:06:57 ID: 16 NS: omero.training.demo
01:06:57 ID: 17 NS: omero.training.demo
01:06:57 ID: 18 NS: omero.training.demo
01:06:57 ID: 66 NS: omero.training.demo
01:06:57 ID: 67 NS: omero.training.demo
01:06:57 ID: 68 NS: omero.training.demo
01:06:57 Dataset:8 MyDataset
01:06:57 Dataset:58 MyDataset
01:06:57 Dataset:3 Orphaned dataset 1
01:06:57 Dataset:54 Orphaned dataset 2
01:06:57 Dataset:66 MyDataset
01:06:57 Dataset:61 New Dataset
01:06:57 Dataset:15 MyDataset
01:06:57 Dataset:53 Orphaned dataset 1
01:06:57 Dataset:63 FileAnnotationDelete
01:06:57 Dataset:13 FileAnnotationDelete
01:06:57 Dataset:11 New Dataset
01:06:57 Dataset:59 MyDataset
01:06:57 Project:1 Project 1
01:06:57 Dataset:10 MyDataset
01:06:57 Dataset:60 MyDataset
01:06:57 Project:51 Project 1
01:06:57 Dataset:12 New Dataset2
01:06:57 Dataset:62 New Dataset2
01:06:57 Dataset:64 MyDataset
01:06:57 Dataset:65 MyDataset
01:06:57 Dataset:14 MyDataset
01:06:57 Dataset:9 MyDataset
01:06:57 Dataset:16 MyDataset
01:06:57 Dataset:4 Orphaned dataset 2
01:06:57 Size:0
01:06:58 512 512
01:06:59 9
01:06:59 9
01:06:59 1
01:07:01 Logged in as ladmin_user
01:07:01 Added 'training_user's tag' to dataset Orphaned dataset 1 on behalf of training_user
01:07:01 Added 'ladmin_user's tag' to dataset Orphaned dataset 1 as admin.
01:07:02 Finished: SUCCESS