Started by upstream project "Trigger" build number 44
originally caused by:
 Started by user devspace
Running as SYSTEM
Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
[OMERO-training] $ /bin/bash -xe /tmp/jenkins886573549343470969.sh
+ rm -rf /home/omero/workspace/OMERO-training/.venv3
+ python3 -m venv /home/omero/workspace/OMERO-training/.venv3
+ source /home/omero/workspace/OMERO-training/.venv3/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(.venv3) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
Collecting zeroc-ice==3.6.5
  Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
Installing collected packages: zeroc-ice
Successfully installed zeroc-ice-3.6.5
+ pip install -U pip future setuptools
Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Collecting future
  Using cached future-1.0.0-py3-none-any.whl (491 kB)
Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0)
Collecting setuptools
  Using cached setuptools-69.5.1-py3-none-any.whl (894 kB)
Installing collected packages: setuptools, pip, future
  Attempting uninstall: setuptools
    Found existing installation: setuptools 53.0.0
    Uninstalling setuptools-53.0.0:
      Successfully uninstalled setuptools-53.0.0
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed future-1.0.0 pip-24.0 setuptools-69.5.1
+ pip install markdown
Collecting markdown
  Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
Collecting importlib-metadata>=4.4 (from markdown)
  Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
  Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
Using cached Markdown-3.6-py3-none-any.whl (105 kB)
Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
Installing collected packages: zipp, importlib-metadata, markdown
Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
+ pip install mox3 pytest 'pytest-xdist<2'
Collecting mox3
  Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pytest
  Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-xdist<2
  Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
  Using cached pbr-6.0.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting fixtures>=3.0.0 (from mox3)
  Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB)
Collecting iniconfig (from pytest)
  Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
Collecting packaging (from pytest)
  Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pluggy<2.0,>=1.4 (from pytest)
  Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
Collecting exceptiongroup>=1.0.0rc8 (from pytest)
  Downloading exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB)
Collecting tomli>=1 (from pytest)
  Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
Collecting execnet>=1.1 (from pytest-xdist<2)
  Using cached execnet-2.1.1-py3-none-any.whl.metadata (2.9 kB)
Collecting pytest-forked (from pytest-xdist<2)
  Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
Collecting six (from pytest-xdist<2)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting py (from pytest-forked->pytest-xdist<2)
  Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
Using cached pytest-8.1.1-py3-none-any.whl (337 kB)
Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
Downloading exceptiongroup-1.2.1-py3-none-any.whl (16 kB)
Using cached execnet-2.1.1-py3-none-any.whl (40 kB)
Using cached fixtures-4.1.0-py3-none-any.whl (64 kB)
Using cached pbr-6.0.0-py2.py3-none-any.whl (107 kB)
Using cached pluggy-1.4.0-py3-none-any.whl (20 kB)
Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Using cached packaging-24.0-py3-none-any.whl (53 kB)
Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
Installing collected packages: tomli, six, py, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-forked, mox3, pytest-xdist
Successfully installed exceptiongroup-1.2.1 execnet-2.1.1 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.0 pbr-6.0.0 pluggy-1.4.0 py-1.11.0 pytest-8.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.16.0 tomli-2.0.1
+ pip install tables
Collecting tables
  Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
Collecting numpy>=1.19.0 (from tables)
  Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
Collecting numexpr>=2.6.2 (from tables)
  Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.0)
Collecting py-cpuinfo (from tables)
  Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
Collecting blosc2>=2.3.0 (from tables)
  Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
  Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
Collecting msgpack (from blosc2>=2.3.0->tables)
  Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB)
Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
Using cached ndindex-1.8-py3-none-any.whl (91 kB)
Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
Installing collected packages: py-cpuinfo, numpy, ndindex, msgpack, numexpr, blosc2, tables
Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 py-cpuinfo-9.0.0 tables-3.9.2
+ pip install jinja2
Collecting jinja2
  Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
Collecting MarkupSafe>=2.0 (from jinja2)
  Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
Installing collected packages: MarkupSafe, jinja2
Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
+ rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero_dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_py-5.19.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero_web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
Copied 5 artifacts from "OMERO-python-superbuild-build" build number 37
Copied 2 artifacts from "OMERO-build" build number 37
Copied 2 artifacts from "OMERO-build-build" build number 38
[OMERO-training] $ /bin/bash -xe /tmp/jenkins15930948255058641864.sh
+ source /home/settings.env
++ OMERO_DB_HOST=pg
++ OMERO_DB_USER=postgres
++ OMERO_DB_PASS=
++ OMERO_ROOT_PASS=omero
++ OMERO_DATA_DIR=/OMERO
++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
+ export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
+ ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
+ export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
+ VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
+ OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
++ ls openmicroscopy-5.6.3-454-801f831fde-ice36.zip
+ ZIP=openmicroscopy-5.6.3-454-801f831fde-ice36.zip
+ DIST=openmicroscopy-5.6.3-454-801f831fde-ice36
+ unzip -n openmicroscopy-5.6.3-454-801f831fde-ice36.zip
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  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO3__6/OMERO3__5.sql  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO3__7/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO3__7/OMERO3__6.sql  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.1__0/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.2__0/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.2__0/t/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.3__0/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
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  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
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  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.0__0/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql  
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  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql  
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  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
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  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
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  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4DEV__1/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4DEV__2/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4DEV__3/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
   creating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/psql-footer.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/psql-header.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/schema.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/views.sql  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/test.xml  
  inflating: openmicroscopy-5.6.3-454-801f831fde-ice36/update_dependencies.sh  
 extracting: openmicroscopy-5.6.3-454-801f831fde-ice36/components/antlib/resources/gitversion.xml  
 extracting: openmicroscopy-5.6.3-454-801f831fde-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake  
+ rm -f openmicroscopy-5.6.3-454-801f831fde-ice36.zip
+ mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-454-801f831fde-ice36 /home/omero/workspace/OMERO-training/openmicroscopy
+ export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
+ OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
++ ls OMERO.server-5.6.3-454-801f831fde-ice36.zip
+ ZIP=OMERO.server-5.6.3-454-801f831fde-ice36.zip
+ DIST=OMERO.server-5.6.3-454-801f831fde-ice36
+ unzip -n OMERO.server-5.6.3-454-801f831fde-ice36.zip
Archive:  OMERO.server-5.6.3-454-801f831fde-ice36.zip
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   creating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/grid/
   creating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/profiles/
   creating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/
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   creating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/grid/
   creating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/
   creating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/
   creating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/scripts/
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   creating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/scripts/omero/annotation_scripts/
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   creating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/server/
   creating: OMERO.server-5.6.3-454-801f831fde-ice36/share/
   creating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/
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   creating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.2__0/t/
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   creating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.1__1/
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   creating: OMERO.server-5.6.3-454-801f831fde-ice36/var/
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/LICENSE.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/backup.cfg  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/blitz/mail-senders.example  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/blitz/mail-server.example  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/build.properties  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/env.bat  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/env.sh  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/hibernate.properties  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/ice.config  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/logback-cli.xml  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/logback-indexing-cli.xml  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/logback-indexing.xml  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/logback.xml  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/mime.types  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/node1.cfg  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/node2.cfg  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/omero.properties  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/profiles/psql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/rollover.cfg  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/Windows.cfg  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/error/maintainance.html  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/grid/README  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/grid/default.xml  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/grid/templates.xml  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/ice.config  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/internal.cfg  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/master.cfg  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/templates/robot.template  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/etc/testdropbox.config  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/history.rst  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/OMEZarrReader.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/activation.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/aggdesigner-algorithm.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/aircompressor.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/annotations.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/antlr.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/aopalliance.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/avatica-core.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/avatica-metrics.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/aws-java-sdk-core.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/aws-java-sdk-kms.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/aws-java-sdk-s3.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/base.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-all.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-anim.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-awt-util.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-bridge.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-codec.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-constants.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-css.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-dom.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-ext.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-extension.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-gui-util.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-gvt.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-i18n.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-parser.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-rasterizer-ext.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-rasterizer.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-script.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-slideshow.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-squiggle-ext.jar  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-squiggle.jar  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/lib/client/batik-svgbrowser.jar  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/crystalclear.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/django.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/dom4j.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/epl-v1.0.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/fbsd.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/freemarker.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/gpl-v2.0.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/gpl.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/gtest.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/iconsweets_license.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/jamon.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/jmock.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/jquery.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/jtidy.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/lgpl-3.0.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/lgpl-v2.0.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/lgpl-v2.1.txt  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/lgpl.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/matplotlib.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/mit.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/mpl-v1_0.htm  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/npl-1_1.txt  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/share/licenses/postgresql.txt  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/README.txt  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/misc/Makefile  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/misc/current.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/misc/enums.py  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/psql-footer.sql  
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  inflating: OMERO.server-5.6.3-454-801f831fde-ice36/sql/psql/OMERO5.4__0/views.sql  
+ rm -f OMERO.server-5.6.3-454-801f831fde-ice36.zip
+ mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-454-801f831fde-ice36 /home/omero/workspace/OMERO-training/OMERO.server
+ source /home/omero/workspace/OMERO-training/.venv3/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(.venv3) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ for x in *.gz
+ pip install omero_dropbox-5.6.3.dev0.tar.gz
Processing ./omero_dropbox-5.6.3.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting omero-py (from omero-dropbox==5.6.3.dev0)
  Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB)
Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
  Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
  Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
  Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB)
Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
Using cached requests-2.31.0-py3-none-any.whl (62 kB)
Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached idna-3.7-py3-none-any.whl (66 kB)
Building wheels for collected packages: omero-dropbox
  Building wheel for omero-dropbox (pyproject.toml): started
  Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
  Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=5b8146863e91c21d18b8654e802c0f610b78b30a141c6b8387945c56a73f8767
  Stored in directory: /home/omero/.cache/pip/wheels/7d/f3/1d/d9623374834e4f7592eeb10b35f8027ca50e665a78492ce5bc
Successfully built omero-dropbox
Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox
Successfully installed Pillow-10.3.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.7 omero-dropbox-5.6.3.dev0 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
+ for x in *.gz
+ pip install omero_marshal-0.9.1.dev0.tar.gz
Processing ./omero_marshal-0.9.1.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: omero_marshal
  Building wheel for omero_marshal (pyproject.toml): started
  Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
  Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=2d4a7d5edb899036f5bf0bdbca84846f9853a5ce1250b855d79355aa6038bbd3
  Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35
Successfully built omero_marshal
Installing collected packages: omero_marshal
Successfully installed omero_marshal-0.9.1.dev0
+ for x in *.gz
+ pip install omero_py-5.19.2.dev0.tar.gz
Processing ./omero_py-5.19.2.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0)
Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.3.0)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.7)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2)
Building wheels for collected packages: omero-py
  Building wheel for omero-py (pyproject.toml): started
  Building wheel for omero-py (pyproject.toml): finished with status 'done'
  Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2782056 sha256=c2320a88ca2d987bebf3b1783d1eda332ce83f3805d6c1f6aa15625774c605bd
  Stored in directory: /home/omero/.cache/pip/wheels/3d/76/be/fed064780218b4afe6ce5ab6990d58d6805fecc4fe4e63bf5d
Successfully built omero-py
Installing collected packages: omero-py
  Attempting uninstall: omero-py
    Found existing installation: omero-py 5.19.1
    Uninstalling omero-py-5.19.1:
      Successfully uninstalled omero-py-5.19.1
Successfully installed omero-py-5.19.2.dev0
+ for x in *.gz
+ pip install omero_scripts-5.8.3.dev0.tar.gz
Processing ./omero_scripts-5.8.3.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: omero-scripts
  Building wheel for omero-scripts (pyproject.toml): started
  Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
  Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116568 sha256=c89e8b4c20df6d3645e22b59124233c788aa2e0fbda7eb3c541035d8548fddcf
  Stored in directory: /home/omero/.cache/pip/wheels/56/c5/d9/bdc503f9ed03713a17b751129922ab527619a765fecd94c691
Successfully built omero-scripts
Installing collected packages: omero-scripts
Successfully installed omero-scripts-5.8.3.dev0
+ for x in *.gz
+ pip install omero_web-5.25.1.dev0.tar.gz
Processing ./omero_web-5.25.1.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0)
Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
  Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
  Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
  Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
  Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
Collecting django-csp (from omero-web==5.25.1.dev0)
  Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
  Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
  Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.3.0)
Collecting pytz (from omero-web==5.25.1.dev0)
  Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
  Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
  Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB)
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
  Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.7)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
Using cached django_csp-3.8-py3-none-any.whl (17 kB)
Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB)
Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
Building wheels for collected packages: omero-web
  Building wheel for omero-web (pyproject.toml): started
  Building wheel for omero-web (pyproject.toml): finished with status 'done'
  Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2772197 sha256=af158c6a806b8bca52952c273910ac1264bf1dee2c1c5698fb75df682fa8f1c4
  Stored in directory: /home/omero/.cache/pip/wheels/b3/35/ed/e60f5e0a12f15f0fb9d625b282f376fe7aacc7841afe283046
Successfully built omero-web
Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.5.0 typing-extensions-4.11.0 whitenoise-6.6.0
+ cd /home/omero/workspace/OMERO-training/OMERO.server
+ bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
+ HOSTNAME=0af814a76df9
+ PORT=4064
+ WEBHOST=http://nginx/web
+ SERVER_NAME=omero
+ ROOT_PASSWORD=omero
+ GROUP_NAME=training_group
+ GROUP_NAME_2=training_group-2
+ USER_NAME=training_user
+ USER_NAME_2=training_user-2
+ LIGHTADMIN_USER_NAME=ladmin_user
+ USER_PASSWORD=ome
+ CONFIG_FILENAME=training_ice.config
+ omero login root@0af814a76df9:4064 -w omero
Created session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
+ omero group add training_group --type read-only --ignore-existing
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
Group exists: training_group (id=3)
+ omero group add training_group-2 --type read-only --ignore-existing
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
Group exists: training_group-2 (id=4)
+ omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
User exists: training_user (id=2)
+ omero user joingroup --name training_user --group-name training_group training_group-2
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
2 is already in group 3
2 is already in group 4
+ omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
User exists: training_user-2 (id=3)
+ omero user joingroup --name training_user-2 --group-name training_group training_group-2
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
3 is already in group 3
3 is already in group 4
+ omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
User exists: ladmin_user (id=4)
+ omero user joingroup --name ladmin_user --group-name training_group training_group-2
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
4 is already in group 3
4 is already in group 4
++ omero user info ladmin_user --style plain
++ cut -d, -f1
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
+ id=4
+ omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
Experimenter:4
+ omero logout
+ touch test.fake
+ omero login training_user@0af814a76df9:4064 -w ome -g training_group
Created session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
+ nProjects=1
+ nDatasets=2
+ echo 'Creating projects and datasets'
Creating projects and datasets
+ (( i=1 ))
+ (( i<=1 ))
++ omero obj new Project 'name=Project 1'
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
+ project=Project:1701
+ (( j=1 ))
+ (( j<=2 ))
++ omero obj new Dataset 'name=Dataset 1-1'
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
+ dataset=Dataset:1751
+ omero obj new ProjectDatasetLink parent=Project:1701 child=Dataset:1751
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
ProjectDatasetLink:1701
+ echo 'Importing image into dataset'
Importing image into dataset
+ omero import -d Dataset:1751 test.fake --debug ERROR
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
2024-04-19 08:52:42,018 543        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-04-19 08:52:42,053 578        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: fc54b0141760fc727b19b6f2ccb04bc9745d5bec date: 19 April 2024
Image:4501
Other imported objects:
Fileset:3301

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:07.931
+ (( j++  ))
+ (( j<=2 ))
++ omero obj new Dataset 'name=Dataset 1-2'
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
+ dataset=Dataset:1752
+ omero obj new ProjectDatasetLink parent=Project:1701 child=Dataset:1752
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
ProjectDatasetLink:1702
+ echo 'Importing image into dataset'
Importing image into dataset
+ omero import -d Dataset:1752 test.fake --debug ERROR
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
2024-04-19 08:52:57,257 351        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-04-19 08:52:57,276 370        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: fc54b0141760fc727b19b6f2ccb04bc9745d5bec date: 19 April 2024
Image:4502
Other imported objects:
Fileset:3302

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.224
+ (( j++  ))
+ (( j<=2 ))
+ (( i++  ))
+ (( i<=1 ))
+ (( j=1 ))
+ (( j<=2 ))
+ omero obj new Dataset 'name=Orphaned dataset 1'
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
Dataset:1753
+ (( j++  ))
+ (( j<=2 ))
+ omero obj new Dataset 'name=Orphaned dataset 2'
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
Dataset:1754
+ (( j++  ))
+ (( j<=2 ))
+ echo 'Importing image file'
Importing image file
+ touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
+ omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
++ sed -n -e 's/^Image://p' image_import.log
+ imageid=4503
++ omero obj new MapAnnotation
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
+ MAP=MapAnnotation:3251
+ omero obj map-set MapAnnotation:3251 mapValue testkey testvalue
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
MapAnnotation:3251
+ omero obj new ImageAnnotationLink parent=Image:4503 child=MapAnnotation:3251
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
ImageAnnotationLink:2251
++ omero obj new Screen name=Screen
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
+ screen=Screen:1601
++ omero obj new Plate name=Plate
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
+ plate=Plate:1701
+ omero obj new ScreenPlateLink parent=Screen:1601 child=Plate:1701
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
ScreenPlateLink:1601
+ echo 'Importing SPW file'
Importing SPW file
+ touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
+ omero import -r Screen:1601 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
++ sed -n -e 's/^Plate://p' plate_import.log
+ plateid=1702
+ omero logout
+ omero login training_user-2@0af814a76df9:4064 -w ome -g training_group
Created session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
+ omero obj new Project 'name=Project 0'
Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
Project:1702
+ omero obj new Dataset 'name=Dataset 0'
Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
Dataset:1755
+ omero import test.fake --debug ERROR
Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
2024-04-19 08:53:39,037 451        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-04-19 08:53:39,069 483        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: fc54b0141760fc727b19b6f2ccb04bc9745d5bec date: 19 April 2024
Image:4507
Other imported objects:
Fileset:3305

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.809
+ omero obj new Screen name=Screen
Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
Screen:1602
+ omero obj new Plate name=Plate
Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
Plate:1703
+ omero login training_user@0af814a76df9:4064 -w ome -g training_group-2
Created session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
+ omero obj new Project 'name=Project 0'
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
Project:1703
+ omero obj new Dataset 'name=Dataset 0'
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
Dataset:1756
+ omero import test.fake --debug ERROR
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
2024-04-19 08:53:52,500 360        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-04-19 08:53:52,532 392        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: fc54b0141760fc727b19b6f2ccb04bc9745d5bec date: 19 April 2024
Image:4508
Other imported objects:
Fileset:3306

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.238
+ omero obj new Screen name=Screen
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
Screen:1603
+ omero obj new Plate name=Plate
Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
Plate:1704
+ omero logout
+ echo omero.host=0af814a76df9
+ echo omero.port=4064
+ echo omero.webhost=http://nginx/web
+ echo omero.servername=omero
+ echo omero.user=training_user
+ echo omero.pass=ome
+ echo omero.group=training_group
+ echo omero.projectid=1701
+ echo omero.datasetid=1752
+ echo omero.imageid=4503
+ echo omero.plateid=1702
+ echo omero.screenid=1601
+ echo omero.group2=training_group-2
+ echo omero.ladmin=ladmin_user
+ rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
+ mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
+ omero sessions clear
1 session(s) cleared
!! 04/19/24 08:54:01.139 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
+ ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
+ pip install --upgrade requests
Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0)
Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.7)
Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18)
Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2)
+ python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
Running training suite
created 20 shapes
retrieved 20 shapes in 4 batches
Current user:
   ID: 2
   Username: training_user
   Full Name: training_user training_user
   Is Admin: False
[]
Member of:
   ID: 3  Name: training_group
   ID: 4  Name: training_group-2
Current group:  training_group
   Group owners:
   Group members:
     ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
     ID: 2 UserName: training_user Name: training_user training_user
     ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
Owner of:
Admins:
   ID: 113 UserName: <hidden> Name: <hidden> <hidden>
   ID: 0 UserName: root Name: root root
   ID: 107 UserName: <hidden> Name: <hidden> <hidden>
   ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
   ID: 119 UserName: <hidden> Name: <hidden> <hidden>
Created new Image:4509 Name:"numpy image"
newPlane for z,t: 0 0 uint8 0 127
newPlane for z,t: 0 1 uint8 0 127
newPlane for z,t: 0 2 uint8 0 127
newPlane for z,t: 0 3 uint8 0 127
newPlane for z,t: 0 4 uint8 0 127
newPlane for z,t: 0 5 uint8 0 127
newPlane for z,t: 0 6 uint8 0 127
newPlane for z,t: 0 7 uint8 0 127
newPlane for z,t: 0 8 uint8 0 127
newPlane for z,t: 0 9 uint8 0 127
newPlane for z,t: 1 0 uint8 0 127
newPlane for z,t: 1 1 uint8 0 127
newPlane for z,t: 1 2 uint8 0 127
newPlane for z,t: 1 3 uint8 0 127
newPlane for z,t: 1 4 uint8 0 127
newPlane for z,t: 1 5 uint8 0 127
newPlane for z,t: 1 6 uint8 0 127
newPlane for z,t: 1 7 uint8 0 127
newPlane for z,t: 1 8 uint8 0 127
newPlane for z,t: 1 9 uint8 0 127
newPlane for z,t: 2 0 uint8 0 127
newPlane for z,t: 2 1 uint8 0 127
newPlane for z,t: 2 2 uint8 0 127
newPlane for z,t: 2 3 uint8 0 127
newPlane for z,t: 2 4 uint8 0 127
newPlane for z,t: 2 5 uint8 0 127
newPlane for z,t: 2 6 uint8 0 127
newPlane for z,t: 2 7 uint8 0 127
newPlane for z,t: 2 8 uint8 0 127
newPlane for z,t: 2 9 uint8 0 127
newPlane for z,t: 3 0 uint8 0 127
newPlane for z,t: 3 1 uint8 0 127
newPlane for z,t: 3 2 uint8 0 127
newPlane for z,t: 3 3 uint8 0 127
newPlane for z,t: 3 4 uint8 0 127
newPlane for z,t: 3 5 uint8 0 127
newPlane for z,t: 3 6 uint8 0 127
newPlane for z,t: 3 7 uint8 0 127
newPlane for z,t: 3 8 uint8 0 127
newPlane for z,t: 3 9 uint8 0 127
newPlane for z,t: 4 0 uint8 0 127
newPlane for z,t: 4 1 uint8 0 127
newPlane for z,t: 4 2 uint8 0 127
newPlane for z,t: 4 3 uint8 0 127
newPlane for z,t: 4 4 uint8 0 127
newPlane for z,t: 4 5 uint8 0 127
newPlane for z,t: 4 6 uint8 0 127
newPlane for z,t: 4 7 uint8 0 127
newPlane for z,t: 4 8 uint8 0 127
newPlane for z,t: 4 9 uint8 0 127
Deleting, please wait.
Error? False
4503 test&sizeT=10&sizeZ=5&sizeC=3.fake
training_user_2/Blitz-0-Ice.ThreadPool.Server-6/2024-04/19/08-53-07.828/ test&sizeT=10&sizeZ=5&sizeC=3.fake
1
training_user_2/Blitz-0-Ice.ThreadPool.Server-6/2024-04/19/08-53-07.828/ test&sizeT=10&sizeZ=5&sizeC=3.fake
Current group:  training_group
Permissions: READ-ONLY (rwr---)
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Image:  <_ImageWrapper id=4503>
Image:  <_ImageWrapper id=4503> Group:  training_group 3
Image:  <_ImageWrapper id=4503> Channel:  0
Channel:  1
Channel:  2


original_metadata
global_metadata
series_metadata

Plane at zct:  0 0 0
[[  0   0   0 ... 253 254 255]
 [  0   0   0 ... 253 254 255]
 [  0   0   0 ... 253 254 255]
 ...
 [  0   1   2 ... 253 254 255]
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 [  0   1   2 ... 253 254 255]]
shape:  (512, 512)
min: 0  max: 255 pixel type: uint8

Z stack of tiles:
Tile: (0, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (1, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (2, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (3, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (4, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450

Hyper stack of planes:
plane zct: (2, 0, 0)  min: 0  max: 255
plane zct: (2, 0, 1)  min: 0  max: 255
plane zct: (2, 0, 2)  min: 0  max: 255
plane zct: (2, 0, 3)  min: 0  max: 255
plane zct: (2, 0, 4)  min: 0  max: 255
plane zct: (2, 0, 5)  min: 0  max: 255
plane zct: (2, 0, 6)  min: 0  max: 255
plane zct: (2, 0, 7)  min: 0  max: 255
plane zct: (2, 0, 8)  min: 0  max: 255
plane zct: (2, 0, 9)  min: 0  max: 255
plane zct: (2, 1, 0)  min: 0  max: 255
plane zct: (2, 1, 1)  min: 0  max: 255
plane zct: (2, 1, 2)  min: 0  max: 255
plane zct: (2, 1, 3)  min: 0  max: 255
plane zct: (2, 1, 4)  min: 0  max: 255
plane zct: (2, 1, 5)  min: 0  max: 255
plane zct: (2, 1, 6)  min: 0  max: 255
plane zct: (2, 1, 7)  min: 0  max: 255
plane zct: (2, 1, 8)  min: 0  max: 255
plane zct: (2, 1, 9)  min: 0  max: 255
plane zct: (2, 2, 0)  min: 0  max: 255
plane zct: (2, 2, 1)  min: 0  max: 255
plane zct: (2, 2, 2)  min: 0  max: 255
plane zct: (2, 2, 3)  min: 0  max: 255
plane zct: (2, 2, 4)  min: 0  max: 255
plane zct: (2, 2, 5)  min: 0  max: 255
plane zct: (2, 2, 6)  min: 0  max: 255
plane zct: (2, 2, 7)  min: 0  max: 255
plane zct: (2, 2, 8)  min: 0  max: 255
plane zct: (2, 2, 9)  min: 0  max: 255
plane zct: (3, 0, 0)  min: 0  max: 255
plane zct: (3, 0, 1)  min: 0  max: 255
plane zct: (3, 0, 2)  min: 0  max: 255
plane zct: (3, 0, 3)  min: 0  max: 255
plane zct: (3, 0, 4)  min: 0  max: 255
plane zct: (3, 0, 5)  min: 0  max: 255
plane zct: (3, 0, 6)  min: 0  max: 255
plane zct: (3, 0, 7)  min: 0  max: 255
plane zct: (3, 0, 8)  min: 0  max: 255
plane zct: (3, 0, 9)  min: 0  max: 255
plane zct: (3, 1, 0)  min: 0  max: 255
plane zct: (3, 1, 1)  min: 0  max: 255
plane zct: (3, 1, 2)  min: 0  max: 255
plane zct: (3, 1, 3)  min: 0  max: 255
plane zct: (3, 1, 4)  min: 0  max: 255
plane zct: (3, 1, 5)  min: 0  max: 255
plane zct: (3, 1, 6)  min: 0  max: 255
plane zct: (3, 1, 7)  min: 0  max: 255
plane zct: (3, 1, 8)  min: 0  max: 255
plane zct: (3, 1, 9)  min: 0  max: 255
plane zct: (3, 2, 0)  min: 0  max: 255
plane zct: (3, 2, 1)  min: 0  max: 255
plane zct: (3, 2, 2)  min: 0  max: 255
plane zct: (3, 2, 3)  min: 0  max: 255
plane zct: (3, 2, 4)  min: 0  max: 255
plane zct: (3, 2, 5)  min: 0  max: 255
plane zct: (3, 2, 6)  min: 0  max: 255
plane zct: (3, 2, 7)  min: 0  max: 255
plane zct: (3, 2, 8)  min: 0  max: 255
plane zct: (3, 2, 9)  min: 0  max: 255
plane zct: (4, 0, 0)  min: 0  max: 255
plane zct: (4, 0, 1)  min: 0  max: 255
plane zct: (4, 0, 2)  min: 0  max: 255
plane zct: (4, 0, 3)  min: 0  max: 255
plane zct: (4, 0, 4)  min: 0  max: 255
plane zct: (4, 0, 5)  min: 0  max: 255
plane zct: (4, 0, 6)  min: 0  max: 255
plane zct: (4, 0, 7)  min: 0  max: 255
plane zct: (4, 0, 8)  min: 0  max: 255
plane zct: (4, 0, 9)  min: 0  max: 255
plane zct: (4, 1, 0)  min: 0  max: 255
plane zct: (4, 1, 1)  min: 0  max: 255
plane zct: (4, 1, 2)  min: 0  max: 255
plane zct: (4, 1, 3)  min: 0  max: 255
plane zct: (4, 1, 4)  min: 0  max: 255
plane zct: (4, 1, 5)  min: 0  max: 255
plane zct: (4, 1, 6)  min: 0  max: 255
plane zct: (4, 1, 7)  min: 0  max: 255
plane zct: (4, 1, 8)  min: 0  max: 255
plane zct: (4, 1, 9)  min: 0  max: 255
plane zct: (4, 2, 0)  min: 0  max: 255
plane zct: (4, 2, 1)  min: 0  max: 255
plane zct: (4, 2, 2)  min: 0  max: 255
plane zct: (4, 2, 3)  min: 0  max: 255
plane zct: (4, 2, 4)  min: 0  max: 255
plane zct: (4, 2, 5)  min: 0  max: 255
plane zct: (4, 2, 6)  min: 0  max: 255
plane zct: (4, 2, 7)  min: 0  max: 255
plane zct: (4, 2, 8)  min: 0  max: 255
plane zct: (4, 2, 9)  min: 0  max: 255
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List Projects:
==================================================
Project:1  Name:"Project 1" (owner=training_user)
  Dataset:1  Name:"Dataset 1-1" (owner=training_user)
    Image:1  Name:"test.fake" (owner=training_user)
  Dataset:2  Name:"Dataset 1-2" (owner=training_user)
    Image:12  Name:"New Image" (owner=training_user)
    Image:13  Name:"newImageFrom3" (owner=training_user)
    Image:2  Name:"test.fake" (owner=training_user)
  Dataset:7  Name:"New Dataset" (owner=training_user)
  Dataset:17  Name:"new Name 1" (owner=training_user)
  Dataset:18  Name:"new Name 2" (owner=training_user)
Project:51  Name:"Project 1" (owner=training_user)
  Dataset:51  Name:"Dataset 1-1" (owner=training_user)
    Image:51  Name:"test.fake" (owner=training_user)
  Dataset:52  Name:"Dataset 1-2" (owner=training_user)
    Image:62  Name:"New Image" (owner=training_user)
    Image:63  Name:"newImageFrom53" (owner=training_user)
    Image:52  Name:"test.fake" (owner=training_user)
  Dataset:57  Name:"New Dataset" (owner=training_user)
  Dataset:67  Name:"new Name 1" (owner=training_user)
  Dataset:68  Name:"new Name 2" (owner=training_user)
Project:101  Name:"Project 1" (owner=training_user)
  Dataset:101  Name:"Dataset 1-1" (owner=training_user)
    Image:101  Name:"test.fake" (owner=training_user)
  Dataset:102  Name:"Dataset 1-2" (owner=training_user)
    Image:112  Name:"New Image" (owner=training_user)
    Image:113  Name:"newImageFrom103" (owner=training_user)
    Image:102  Name:"test.fake" (owner=training_user)
  Dataset:107  Name:"New Dataset" (owner=training_user)
  Dataset:117  Name:"new Name 1" (owner=training_user)
  Dataset:118  Name:"new Name 2" (owner=training_user)
Project:151  Name:"Project 1" (owner=training_user)
  Dataset:151  Name:"Dataset 1-1" (owner=training_user)
    Image:151  Name:"test.fake" (owner=training_user)
  Dataset:152  Name:"Dataset 1-2" (owner=training_user)
    Image:162  Name:"New Image" (owner=training_user)
    Image:163  Name:"newImageFrom153" (owner=training_user)
    Image:152  Name:"test.fake" (owner=training_user)
  Dataset:157  Name:"New Dataset" (owner=training_user)
  Dataset:167  Name:"new Name 1" (owner=training_user)
  Dataset:168  Name:"new Name 2" (owner=training_user)
Project:301  Name:"Project 1" (owner=training_user)
  Dataset:351  Name:"Dataset 1-1" (owner=training_user)
    Image:2551  Name:"test.fake" (owner=training_user)
  Dataset:352  Name:"Dataset 1-2" (owner=training_user)
    Image:2562  Name:"New Image" (owner=training_user)
    Image:2563  Name:"newImageFrom2553" (owner=training_user)
    Image:2552  Name:"test.fake" (owner=training_user)
  Dataset:357  Name:"New Dataset" (owner=training_user)
  Dataset:367  Name:"new Name 1" (owner=training_user)
  Dataset:368  Name:"new Name 2" (owner=training_user)

List orphaned Datasets: 
 ==================================================
Dataset:3  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:4  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:5  Name:"Dataset 0" (owner=training_user-2)
Dataset:8  Name:"MyDataset" (owner=training_user)
Dataset:9  Name:"MyDataset" (owner=training_user)
Dataset:10  Name:"MyDataset" (owner=training_user)
Dataset:11  Name:"New Dataset" (owner=training_user)
Dataset:12  Name:"New Dataset2" (owner=training_user)
Dataset:13  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:14  Name:"MyDataset" (owner=training_user)
Dataset:15  Name:"MyDataset" (owner=training_user)
Dataset:16  Name:"MyDataset" (owner=training_user)
Dataset:53  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:54  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:55  Name:"Dataset 0" (owner=training_user-2)
Dataset:58  Name:"MyDataset" (owner=training_user)
Dataset:59  Name:"MyDataset" (owner=training_user)
Dataset:60  Name:"MyDataset" (owner=training_user)
Dataset:61  Name:"New Dataset" (owner=training_user)
Dataset:62  Name:"New Dataset2" (owner=training_user)
Dataset:63  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:64  Name:"MyDataset" (owner=training_user)
Dataset:65  Name:"MyDataset" (owner=training_user)
Dataset:66  Name:"MyDataset" (owner=training_user)
Dataset:103  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:104  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:105  Name:"Dataset 0" (owner=training_user-2)
Dataset:108  Name:"MyDataset" (owner=training_user)
Dataset:109  Name:"MyDataset" (owner=training_user)
Dataset:110  Name:"MyDataset" (owner=training_user)
Dataset:111  Name:"New Dataset" (owner=training_user)
Dataset:112  Name:"New Dataset2" (owner=training_user)
Dataset:113  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:114  Name:"MyDataset" (owner=training_user)
Dataset:115  Name:"MyDataset" (owner=training_user)
Dataset:116  Name:"MyDataset" (owner=training_user)
Dataset:153  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:154  Name:"Orphaned dataset 2" (owner=training_user)
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Dataset:1658  Name:"MyDataset" (owner=training_user)
Dataset:1659  Name:"MyDataset" (owner=training_user)
Dataset:1660  Name:"MyDataset" (owner=training_user)
Dataset:1661  Name:"New Dataset" (owner=training_user)
Dataset:1662  Name:"New Dataset2" (owner=training_user)
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Dataset:1665  Name:"MyDataset" (owner=training_user)
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Dataset:1703  Name:"Orphaned dataset 1" (owner=training_user)
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Dataset:1708  Name:"MyDataset" (owner=training_user)
Dataset:1709  Name:"MyDataset" (owner=training_user)
Dataset:1710  Name:"MyDataset" (owner=training_user)
Dataset:1711  Name:"New Dataset" (owner=training_user)
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Dataset:1713  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:1714  Name:"MyDataset" (owner=training_user)
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Dataset:1716  Name:"MyDataset" (owner=training_user)
Dataset:1753  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:1754  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:1755  Name:"Dataset 0" (owner=training_user-2)

Images in Dataset: 1752 
 ==================================================
Image:4502  Name:"test.fake" (owner=training_user)

Image:4503
==================================================
test&sizeT=10&sizeZ=5&sizeC=3.fake 
 X: 512
 Y: 512
 Z: 5
 C: 3
 T: 10
Channel: 0 Color: (255, 0, 0)
Lookup table: None
Is reverse intensity? False
Channel: 1 Color: (0, 255, 0)
Lookup table: None
Is reverse intensity? False
Channel: 2 Color: (0, 0, 255)
Lookup table: None
Is reverse intensity? False
 Pixel Size X: None

List Screens:
==================================================
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<string>:150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
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Screen:1452  Name:"Screen" (owner=training_user-2)
Screen:1501  Name:"Screen" (owner=training_user)
  Plate:1601  Name:"Plate" (owner=training_user)
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Screen:1502  Name:"Screen" (owner=training_user-2)
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Screen:1552  Name:"Screen" (owner=training_user-2)
Screen:1601  Name:"Screen" (owner=training_user)
  Plate:1701  Name:"Plate" (owner=training_user)
  Plate:1702  Name:"Plate Name 0" (owner=training_user)
Screen:1602  Name:"Screen" (owner=training_user-2)

Plate:1702
==================================================

Number of fields: (0, 0)

Grid size: {'rows': 1, 'columns': 3}

Wells in Plate: Plate Name 0
  Well:  0 1  Fields: 1
    Image:  SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 4505
  Well:  0 2  Fields: 1
    Image:  SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 4506
  Well:  0 0  Fields: 1
    Image:  SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 4504
3251 <class 'omero.model.MapAnnotationI'>
 added by  training_user
Image ID: 4503
Annotation ID: 3251
4503
Channel rendering settings:
Name:  0
  Color: FF0000
  Active: True
  Levels: 0.0 - 255.0
Name:  1
  Color: 00FF00
  Active: True
  Levels: 0.0 - 255.0
Name:  2
  Color: 0000FF
  Active: True
  Levels: 0.0 - 255.0
isGreyscaleRenderingModel: False
Default Z/T positions:
    Z = 2, T = 0
Rendering Defs on Image:
   ID: 4403 (owner: training_user training_user)
Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
ROI:  ID: 1652
   Shape:    id 1721    theT 0    theZ 2    textValue test-Rectangle    type Rectangle    x 50.0    y 200.0    width 100.0    height 50.0 
   Shape:    id 1722    theT 0    theZ 2    textValue test-Ellipse    type Ellipse    x 200.0    y 50.0    radiusX 100.0    radiusY 50.0 
ROI:  ID: 1653
   Shape:    id 1723    theT 0    theZ 2    textValue test-Line    type Line    x1 50.0    x2 150.0    y1 200.0    y2 250.0 
ROI:  ID: 1654
   Shape:    id 1724    theT 0    theZ 0    textValue test-Mask    type Mask    x 50.0    y 50.0    width 100.0    height 100.0 
ROI:  ID: 1655
   Shape:    id 1725    theT 0    theZ 2    textValue test-Point    type Point    x 50.0    y 200.0 
ROI:  ID: 1656
<class 'omero.model.PolygonI'>  Not supported by this code
   Shape:    id 1726    theT 0    theZ 2    textValue test-Polygon 
Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
Removing Shape from ROI...
Deleting ROI: 1657
Table Columns:
    Uid
    MyStringColumnInit
Row count: 10

Get All Data for rows:  [3, 5, 7]
Data for Column:  Uid
    1
    2
    3
    4
    5
    6
    7
    8
    9
    10
Data for Column:  MyStringColumnInit
    one
    two
    three
    four
    five
    six
    seven
    eight
    nine
    ten

Get All Data for rows with slice:  [3, 5, 7]
Data for Column:  Uid
    4
    6
    8
Data for Column:  MyStringColumnInit
    four
    six
    eight

Get Data for cols:  [1]  and between rows:  3 - 7
Data for Column:  MyStringColumnInit
    four
    five
    six
    seven

Get Data for cols:  [1]  and between rows:  3 - 7  with slice
Data for Column:  MyStringColumnInit
    four
    five
    six
    seven
Query Results for Column:  Uid
    3
    4
    5
    6
    7
    8
Query Results for Column:  MyStringColumnInit
    three
    four
    five
    six
    seven
    eight
Opened table with row-count: 10
New dataset, Id: 1757
{'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
3255 <class 'omero.model.TagAnnotationI'>  added by  training_user
Tag value: New Tag
3256 <class 'omero.model.MapAnnotationI'>  added by  training_user

Creating an OriginalFile and FileAnnotation
Attaching FileAnnotation to Dataset:  File ID: 3257 , README.txt Size: 15

Annotations on Dataset: New Dataset
File ID: 13897 README.txt Size: 15

Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
File downloaded!
3107 README.txt
57 README.txt
3257 README.txt
2957 README.txt
2857 README.txt
2357 README.txt
1907 README.txt
2707 README.txt
3207 README.txt
1507 README.txt
2207 README.txt
2507 README.txt
157 README.txt
1607 README.txt
1557 README.txt
2757 README.txt
107 README.txt
2807 README.txt
1407 README.txt
2407 README.txt
7 README.txt
1457 README.txt
2607 README.txt
3057 README.txt
2657 README.txt
3007 README.txt
2457 README.txt
2157 README.txt
2257 README.txt
2307 README.txt
2907 README.txt
2557 README.txt
1657 README.txt
Found Annotation with namespace:  imperial.training.demo
Plane:  0 0 0
Applying channel Names: ['0', '1', '2']  Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
[(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]

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ID: 2767 Text: MyTag Desc: MyTag 1
ID: 2768 Text: MyTag Desc: MyTag 2
ID: 2816 Text: MyTag Desc: MyTag 0
ID: 2817 Text: MyTag Desc: MyTag 1
ID: 2818 Text: MyTag Desc: MyTag 2
ID: 2366 Text: MyTag Desc: MyTag 0
ID: 2367 Text: MyTag Desc: MyTag 1
ID: 2368 Text: MyTag Desc: MyTag 2
ID: 2408 Text: MyTag Desc: MyTag 0
ID: 2409 Text: MyTag Desc: MyTag 1
ID: 2410 Text: MyTag Desc: MyTag 2
ID: 2416 Text: MyTag Desc: MyTag 0
ID: 2417 Text: MyTag Desc: MyTag 1
ID: 2418 Text: MyTag Desc: MyTag 2
ID: 2458 Text: MyTag Desc: MyTag 0
ID: 2459 Text: MyTag Desc: MyTag 1
ID: 2460 Text: MyTag Desc: MyTag 2
ID: 2466 Text: MyTag Desc: MyTag 0
ID: 2467 Text: MyTag Desc: MyTag 1
ID: 2468 Text: MyTag Desc: MyTag 2
ID: 2558 Text: MyTag Desc: MyTag 0
ID: 2559 Text: MyTag Desc: MyTag 1
ID: 2560 Text: MyTag Desc: MyTag 2
ID: 1908 Text: MyTag Desc: MyTag 0
ID: 1909 Text: MyTag Desc: MyTag 1
ID: 1910 Text: MyTag Desc: MyTag 2
ID: 1916 Text: MyTag Desc: MyTag 0
ID: 1917 Text: MyTag Desc: MyTag 1
ID: 1918 Text: MyTag Desc: MyTag 2
ID: 2916 Text: MyTag Desc: MyTag 0
ID: 2917 Text: MyTag Desc: MyTag 1
ID: 2918 Text: MyTag Desc: MyTag 2
ID: 2958 Text: MyTag Desc: MyTag 0
ID: 2959 Text: MyTag Desc: MyTag 1
ID: 2960 Text: MyTag Desc: MyTag 2
ID: 2966 Text: MyTag Desc: MyTag 0
ID: 2967 Text: MyTag Desc: MyTag 1
ID: 2968 Text: MyTag Desc: MyTag 2
ID: 3008 Text: MyTag Desc: MyTag 0
ID: 3009 Text: MyTag Desc: MyTag 1
ID: 3010 Text: MyTag Desc: MyTag 2
ID: 3016 Text: MyTag Desc: MyTag 0
ID: 3017 Text: MyTag Desc: MyTag 1
ID: 3018 Text: MyTag Desc: MyTag 2
ID: 3058 Text: MyTag Desc: MyTag 0
ID: 3059 Text: MyTag Desc: MyTag 1
ID: 3060 Text: MyTag Desc: MyTag 2
ID: 3066 Text: MyTag Desc: MyTag 0
ID: 3067 Text: MyTag Desc: MyTag 1
ID: 3068 Text: MyTag Desc: MyTag 2
ID: 3108 Text: MyTag Desc: MyTag 0
ID: 3109 Text: MyTag Desc: MyTag 1
ID: 3110 Text: MyTag Desc: MyTag 2
ID: 3116 Text: MyTag Desc: MyTag 0
ID: 3117 Text: MyTag Desc: MyTag 1
ID: 3118 Text: MyTag Desc: MyTag 2
ID: 3208 Text: MyTag Desc: MyTag 0
ID: 3209 Text: MyTag Desc: MyTag 1
ID: 3210 Text: MyTag Desc: MyTag 2
ID: 3216 Text: MyTag Desc: MyTag 0
ID: 3217 Text: MyTag Desc: MyTag 1
ID: 3218 Text: MyTag Desc: MyTag 2
ID: 3258 Text: MyTag Desc: MyTag 0
ID: 3259 Text: MyTag Desc: MyTag 1
ID: 3260 Text: MyTag Desc: MyTag 2
New dataset, Id: 1761
New dataset 2, Id: 1762
test&sizeT=10&sizeZ=5&sizeC=3.fake
Tile at zct tile:  2.5 0 0 (5, 5, 100, 100)
[[  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 ...
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]]
shape:  (100, 100)
min: 0  max: 104 pixel type: uint8
Average : 53.9125
Getting data for T, tile: 0 (256.0, 0, 10, 512)
Getting data for T, tile: 1 (256.0, 0, 10, 512)
Getting data for T, tile: 2 (256.0, 0, 10, 512)
Getting data for T, tile: 3 (256.0, 0, 10, 512)
Getting data for T, tile: 4 (256.0, 0, 10, 512)
Getting data for T, tile: 5 (256.0, 0, 10, 512)
Getting data for T, tile: 6 (256.0, 0, 10, 512)
Getting data for T, tile: 7 (256.0, 0, 10, 512)
Getting data for T, tile: 8 (256.0, 0, 10, 512)
Getting data for T, tile: 9 (256.0, 0, 10, 512)
kymograph_data (512, 100)
Attaching kymograph.png to image
test&sizeT=10&sizeZ=5&sizeC=3.fake
Tile at zct tile:  2.5 0 0 (5, 5, 100, 100)
[[  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 ...
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]]
shape:  (100, 100)
min: 0  max: 104 pixel type: uint8
Average : 53.9125
Getting data for T, tile: 0 (256.0, 0, 10, 512)
Getting data for T, tile: 1 (256.0, 0, 10, 512)
Getting data for T, tile: 2 (256.0, 0, 10, 512)
Getting data for T, tile: 3 (256.0, 0, 10, 512)
Getting data for T, tile: 4 (256.0, 0, 10, 512)
Getting data for T, tile: 5 (256.0, 0, 10, 512)
Getting data for T, tile: 6 (256.0, 0, 10, 512)
Getting data for T, tile: 7 (256.0, 0, 10, 512)
Getting data for T, tile: 8 (256.0, 0, 10, 512)
Getting data for T, tile: 9 (256.0, 0, 10, 512)
kymograph_data (512, 100)
Attaching kymograph.png to image
No file downloaded. Project not rated.
New image, Id: 4512
Starting at: http://nginx/web/api/
CSRF token UleUnN2jpZhTpsHzv1139rJgb3Op8MgKDE9brjH6VTyVyf4hBsZPbcbx3rmAURHz
Servers:
-id: 1
 name: omero
 host: omero
 port: 4064
-id: 2
 name: testintegration
 host: testintegration
 port: 14064
eventContext {'sessionId': 6330, 'sessionUuid': '06c198ec-375d-43a4-a4d2-7e96198565ab', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
Projects:
   2 Project 0
   3 Project 0
Created Project: 1706 API TEST foo
{'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 1706, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/1706/datasets/'}}
!! 04/19/24 08:54:31.609 error: communicator not destroyed during global destruction.+ deactivate
+ '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
+ PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+ export PATH
+ unset _OLD_VIRTUAL_PATH
+ '[' -n '' ']'
+ '[' -n /bin/bash -o -n '' ']'
+ hash -r
+ '[' -n '' ']'
+ unset VIRTUAL_ENV
+ '[' '!' '' = nondestructive ']'
+ unset -f deactivate
+ cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
+ javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
+ java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
omero.cmd.Delete2Response@15c25153
omero.cmd.Delete2Response@44e3760b
one [class java.lang.String]	1.0 [class java.lang.Double]	
two [class java.lang.String]	2.0 [class java.lang.Double]	
three [class java.lang.String]	3.0 [class java.lang.Double]	
-1.0
0
1
2
   0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
   1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   4 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   5 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   6 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   7 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   8 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   9 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  10 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  11 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  12 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  13 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  14 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  15 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  16 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  17 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  18 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  19 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  20 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  21 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  22 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  23 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  24 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
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  26 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  27 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  28 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
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  31 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  32 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
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  39 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
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  45 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  46 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  47 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  48 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  49 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  50 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
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  56 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
  57 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
  58 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
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List Datasets:
ID: 8 Name: MyDataset
ID: 9 Name: MyDataset
ID: 10 Name: MyDataset
ID: 14 Name: MyDataset
ID: 15 Name: MyDataset
ID: 16 Name: MyDataset
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Project:101 Project 1
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Dataset:610 MyDataset
Dataset:665 MyDataset
Dataset:1211 New Dataset
Size:0
512 512
9
9
1
Logged in as ladmin_user
Added 'training_user's tag' to dataset Orphaned dataset 1 on behalf of training_user
Added 'ladmin_user's tag' to dataset Orphaned dataset 1 as admin.
Finished: SUCCESS