Started by upstream project "Trigger" build number 9
originally caused by:
 Started by user devspace
Running as SYSTEM
Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
[OMERO-training] $ /bin/bash -xe /tmp/jenkins2017122680887640238.sh
+ rm -rf /home/omero/workspace/OMERO-training/.venv3
+ python3 -m venv /home/omero/workspace/OMERO-training/.venv3
+ source /home/omero/workspace/OMERO-training/.venv3/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(.venv3) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
Collecting zeroc-ice==3.6.5
  Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
Installing collected packages: zeroc-ice
Successfully installed zeroc-ice-3.6.5
WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
You should consider upgrading via the '/home/omero/workspace/OMERO-training/.venv3/bin/python3 -m pip install --upgrade pip' command.
+ pip install -U pip future setuptools
Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Collecting future
  Using cached future-1.0.0-py3-none-any.whl (491 kB)
Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0)
Collecting setuptools
  Using cached setuptools-69.2.0-py3-none-any.whl (821 kB)
Installing collected packages: setuptools, pip, future
  Attempting uninstall: setuptools
    Found existing installation: setuptools 53.0.0
    Uninstalling setuptools-53.0.0:
      Successfully uninstalled setuptools-53.0.0
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed future-1.0.0 pip-24.0 setuptools-69.2.0
+ pip install markdown
Collecting markdown
  Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
Collecting importlib-metadata>=4.4 (from markdown)
  Using cached importlib_metadata-7.0.2-py3-none-any.whl.metadata (4.6 kB)
Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
  Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
Using cached Markdown-3.6-py3-none-any.whl (105 kB)
Using cached importlib_metadata-7.0.2-py3-none-any.whl (24 kB)
Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
Installing collected packages: zipp, importlib-metadata, markdown
Successfully installed importlib-metadata-7.0.2 markdown-3.6 zipp-3.18.1
+ pip install mox3 pytest 'pytest-xdist<2'
Collecting mox3
  Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pytest
  Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-xdist<2
  Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
  Using cached pbr-6.0.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting fixtures>=3.0.0 (from mox3)
  Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB)
Collecting iniconfig (from pytest)
  Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
Collecting packaging (from pytest)
  Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pluggy<2.0,>=1.4 (from pytest)
  Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
Collecting exceptiongroup>=1.0.0rc8 (from pytest)
  Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB)
Collecting tomli>=1 (from pytest)
  Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
Collecting execnet>=1.1 (from pytest-xdist<2)
  Using cached execnet-2.0.2-py3-none-any.whl.metadata (2.9 kB)
Collecting pytest-forked (from pytest-xdist<2)
  Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
Collecting six (from pytest-xdist<2)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting py (from pytest-forked->pytest-xdist<2)
  Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
Using cached pytest-8.1.1-py3-none-any.whl (337 kB)
Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB)
Using cached execnet-2.0.2-py3-none-any.whl (37 kB)
Using cached fixtures-4.1.0-py3-none-any.whl (64 kB)
Using cached pbr-6.0.0-py2.py3-none-any.whl (107 kB)
Using cached pluggy-1.4.0-py3-none-any.whl (20 kB)
Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Using cached packaging-24.0-py3-none-any.whl (53 kB)
Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
Installing collected packages: tomli, six, py, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-forked, mox3, pytest-xdist
Successfully installed exceptiongroup-1.2.0 execnet-2.0.2 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.0 pbr-6.0.0 pluggy-1.4.0 py-1.11.0 pytest-8.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.16.0 tomli-2.0.1
+ pip install tables
Collecting tables
  Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
Collecting numpy>=1.19.0 (from tables)
  Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
Collecting numexpr>=2.6.2 (from tables)
  Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.0)
Collecting py-cpuinfo (from tables)
  Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
Collecting blosc2>=2.3.0 (from tables)
  Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
  Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
Collecting msgpack (from blosc2>=2.3.0->tables)
  Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB)
Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
Using cached ndindex-1.8-py3-none-any.whl (91 kB)
Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
Installing collected packages: py-cpuinfo, numpy, ndindex, msgpack, numexpr, blosc2, tables
Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 py-cpuinfo-9.0.0 tables-3.9.2
+ pip install jinja2
Collecting jinja2
  Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
Collecting MarkupSafe>=2.0 (from jinja2)
  Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
Installing collected packages: MarkupSafe, jinja2
Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
+ rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-py-5.19.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
Copied 5 artifacts from "OMERO-python-superbuild-build" build number 6
Copied 2 artifacts from "OMERO-build" build number 6
Copied 2 artifacts from "OMERO-build-build" build number 6
[OMERO-training] $ /bin/bash -xe /tmp/jenkins16909565114913770726.sh
+ source /home/settings.env
++ OMERO_DB_HOST=pg
++ OMERO_DB_USER=postgres
++ OMERO_DB_PASS=
++ OMERO_ROOT_PASS=omero
++ OMERO_DATA_DIR=/OMERO
++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
+ export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
+ ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
+ export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
+ VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
+ OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
++ ls openmicroscopy-5.6.3-437-4311821d91-ice36.zip
+ ZIP=openmicroscopy-5.6.3-437-4311821d91-ice36.zip
+ DIST=openmicroscopy-5.6.3-437-4311821d91-ice36
+ unzip -n openmicroscopy-5.6.3-437-4311821d91-ice36.zip
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  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
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  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
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  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
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  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
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  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
   creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__1/
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
   creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__2/
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
   creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__3/
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
   creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/psql-footer.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/psql-header.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/schema.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/views.sql  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/test.xml  
  inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/update_dependencies.sh  
 extracting: openmicroscopy-5.6.3-437-4311821d91-ice36/components/antlib/resources/gitversion.xml  
 extracting: openmicroscopy-5.6.3-437-4311821d91-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake  
+ rm -f openmicroscopy-5.6.3-437-4311821d91-ice36.zip
+ mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-437-4311821d91-ice36 /home/omero/workspace/OMERO-training/openmicroscopy
+ export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
+ OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
++ ls OMERO.server-5.6.3-437-4311821d91-ice36.zip
+ ZIP=OMERO.server-5.6.3-437-4311821d91-ice36.zip
+ DIST=OMERO.server-5.6.3-437-4311821d91-ice36
+ unzip -n OMERO.server-5.6.3-437-4311821d91-ice36.zip
Archive:  OMERO.server-5.6.3-437-4311821d91-ice36.zip
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   creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/grid/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/profiles/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/error/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/
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   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/
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   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/luts/janelia/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/luts/ncsa_paledit/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/luts/wcif/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/
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   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/annotation_scripts/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/export_scripts/
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   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/util_scripts/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/server/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/share/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/
   creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/misc/
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   creating: OMERO.server-5.6.3-437-4311821d91-ice36/var/
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/LICENSE.txt  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/backup.cfg  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/blitz/mail-senders.example  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/blitz/mail-server.example  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/build.properties  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/env.bat  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/env.sh  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/hibernate.properties  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/ice.config  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/logback-cli.xml  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/logback-indexing-cli.xml  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/logback.xml  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/mime.types  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/node1.cfg  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/node2.cfg  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/omero.properties  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/profiles/psql  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/rollover.cfg  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/Windows.cfg  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/error/maintainance.html  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/README  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/default.xml  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/templates.xml  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/windefault.xml  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/internal.cfg  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/master.cfg  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/robot.template  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/testdropbox.config  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/history.rst  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/OMEZarrReader.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/activation.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/aggdesigner-algorithm.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/aircompressor.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/annotations.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/antlr.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/aopalliance.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/apache-client.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/arns.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/auth.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/avatica-core.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/avatica-metrics.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/aws-core.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/aws-query-protocol.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/aws-xml-protocol.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/base.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-all.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-anim.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-awt-util.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-bridge.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-codec.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-constants.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-css.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-dom.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-ext.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-extension.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-gui-util.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-gvt.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-i18n.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-parser.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-rasterizer-ext.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-rasterizer.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-script.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-slideshow.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-squiggle-ext.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-squiggle.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-svg-dom.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-svgbrowser.jar  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-ttf2svg.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-util.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/batik-xml.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/btm.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/bufr.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/c3p0.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/calcite-core.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/calcite-linq4j.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/cdm-core.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/checker-qual.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/commons-beanutils.jar  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/commons-io.jar  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/commons-lang3.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/commons-logging.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/commons-pool2.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/dom4j.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/ehcache.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/error_prone_annotations.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/esri-geometry-api.jar  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/eventstream.jar  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/cpl-v10.html  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/crystalclear.txt  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/fbsd.txt  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/freemarker.txt  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/gtest.txt  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/iconsweets_license.txt  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/jquery.txt  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/lgpl-3.0.txt  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/matplotlib.txt  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/mit.txt  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/README.txt  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
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  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
  inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
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+ rm -f OMERO.server-5.6.3-437-4311821d91-ice36.zip
+ mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-437-4311821d91-ice36 /home/omero/workspace/OMERO-training/OMERO.server
+ source /home/omero/workspace/OMERO-training/.venv3/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(.venv3) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ for x in *.gz
+ pip install omero-dropbox-5.6.3.dev0.tar.gz
Processing ./omero-dropbox-5.6.3.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting omero-py (from omero-dropbox==5.6.3.dev0)
  Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB)
Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0)
  Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
  Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
  Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
  Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB)
Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
Using cached requests-2.31.0-py3-none-any.whl (62 kB)
Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached idna-3.6-py3-none-any.whl (61 kB)
Building wheels for collected packages: omero-dropbox
  Building wheel for omero-dropbox (pyproject.toml): started
  Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
  Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=a94052aad81a230a236bc046cca0a20f2f4c9b1fc0f541a965dbc15385ca30a7
  Stored in directory: /home/omero/.cache/pip/wheels/70/da/3d/331719007048e84a6ccfa834fcb865d58e6f5e47143b222b43
Successfully built omero-dropbox
Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox
Successfully installed Pillow-10.2.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-dropbox-5.6.3.dev0 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
+ for x in *.gz
+ pip install omero_marshal-0.9.1.dev0.tar.gz
Processing ./omero_marshal-0.9.1.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: omero_marshal
  Building wheel for omero_marshal (pyproject.toml): started
  Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
  Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=0825852f315937b52b251822f1fbe1272f530cbabb706d236615fa192c5c6ca6
  Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35
Successfully built omero_marshal
Installing collected packages: omero_marshal
Successfully installed omero_marshal-0.9.1.dev0
+ for x in *.gz
+ pip install omero-py-5.19.1.dev0.tar.gz
Processing ./omero-py-5.19.1.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0)
Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2)
Building wheels for collected packages: omero-py
  Building wheel for omero-py (pyproject.toml): started
  Building wheel for omero-py (pyproject.toml): finished with status 'done'
  Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781680 sha256=c49c544a600d0bdc593a68d96938adb05701a24240a814799382a2b863587a68
  Stored in directory: /home/omero/.cache/pip/wheels/0f/f4/17/8aed7bcc59ee680e04154ad77e9d7c203954875e9f0e1940d5
Successfully built omero-py
Installing collected packages: omero-py
  Attempting uninstall: omero-py
    Found existing installation: omero-py 5.19.0
    Uninstalling omero-py-5.19.0:
      Successfully uninstalled omero-py-5.19.0
Successfully installed omero-py-5.19.1.dev0
+ for x in *.gz
+ pip install omero-scripts-5.8.1.dev0.tar.gz
Processing ./omero-scripts-5.8.1.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: omero-scripts
  Building wheel for omero-scripts (pyproject.toml): started
  Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
  Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=3cd56c551f6647d1e996d644cf768d05f0c7b92b30c7b9bfd538c6c5ef3a87a5
  Stored in directory: /home/omero/.cache/pip/wheels/bf/20/bf/f0e89c5f6fcd6f4ff1c089bc6b449e017b94b2f6b6c2593196
Successfully built omero-scripts
Installing collected packages: omero-scripts
Successfully installed omero-scripts-5.8.1.dev0
+ for x in *.gz
+ pip install omero-web-5.25.1.dev0.tar.gz
Processing ./omero-web-5.25.1.dev0.tar.gz
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0)
Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
  Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
  Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
  Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
  Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
Collecting django-csp (from omero-web==5.25.1.dev0)
  Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
  Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
  Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
Collecting pytz (from omero-web==5.25.1.dev0)
  Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
  Using cached asgiref-3.7.2-py3-none-any.whl.metadata (9.2 kB)
Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
  Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
  Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
Using cached django_csp-3.8-py3-none-any.whl (17 kB)
Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
Using cached asgiref-3.7.2-py3-none-any.whl (24 kB)
Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
Building wheels for collected packages: omero-web
  Building wheel for omero-web (pyproject.toml): started
  Building wheel for omero-web (pyproject.toml): finished with status 'done'
  Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2769903 sha256=63b82c9d8bbd3e4db40bfb1b4f353f063003d0dc23c80007dc31de546f9797cc
  Stored in directory: /home/omero/.cache/pip/wheels/27/e6/a8/3c62891eccbd4759036a66343d82d7ebc8ff45e9a0976cd8c7
Successfully built omero-web
Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
Successfully installed Django-4.2.11 asgiref-3.7.2 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
+ cd /home/omero/workspace/OMERO-training/OMERO.server
+ bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
+ HOSTNAME=7ef93461c40d
+ PORT=4064
+ WEBHOST=http://nginx/web
+ SERVER_NAME=omero
+ ROOT_PASSWORD=omero
+ GROUP_NAME=training_group
+ GROUP_NAME_2=training_group-2
+ USER_NAME=training_user
+ USER_NAME_2=training_user-2
+ LIGHTADMIN_USER_NAME=ladmin_user
+ USER_PASSWORD=ome
+ CONFIG_FILENAME=training_ice.config
+ omero login root@7ef93461c40d:4064 -w omero
Created session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
+ omero group add training_group --type read-only --ignore-existing
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
Group exists: training_group (id=3)
+ omero group add training_group-2 --type read-only --ignore-existing
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
Group exists: training_group-2 (id=4)
+ omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
User exists: training_user (id=2)
+ omero user joingroup --name training_user --group-name training_group training_group-2
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
2 is already in group 3
2 is already in group 4
+ omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
User exists: training_user-2 (id=3)
+ omero user joingroup --name training_user-2 --group-name training_group training_group-2
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
3 is already in group 3
3 is already in group 4
+ omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
User exists: ladmin_user (id=4)
+ omero user joingroup --name ladmin_user --group-name training_group training_group-2
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
4 is already in group 3
4 is already in group 4
++ omero user info ladmin_user --style plain
++ cut -d, -f1
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
+ id=4
+ omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
Experimenter:4
+ omero logout
+ touch test.fake
+ omero login training_user@7ef93461c40d:4064 -w ome -g training_group
Created session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
+ nProjects=1
+ nDatasets=2
+ echo 'Creating projects and datasets'
Creating projects and datasets
+ (( i=1 ))
+ (( i<=1 ))
++ omero obj new Project 'name=Project 1'
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
+ project=Project:151
+ (( j=1 ))
+ (( j<=2 ))
++ omero obj new Dataset 'name=Dataset 1-1'
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
+ dataset=Dataset:151
+ omero obj new ProjectDatasetLink parent=Project:151 child=Dataset:151
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
ProjectDatasetLink:151
+ echo 'Importing image into dataset'
Importing image into dataset
+ omero import -d Dataset:151 test.fake --debug ERROR
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
2024-03-20 10:24:58,891 439        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-03-20 10:24:58,923 471        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 5d76f93745031c4c579e0858696ff3253aab48bb date: 20 March 2024
Image:151
Other imported objects:
Fileset:151

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:05.161
+ (( j++  ))
+ (( j<=2 ))
++ omero obj new Dataset 'name=Dataset 1-2'
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
+ dataset=Dataset:152
+ omero obj new ProjectDatasetLink parent=Project:151 child=Dataset:152
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
ProjectDatasetLink:152
+ echo 'Importing image into dataset'
Importing image into dataset
+ omero import -d Dataset:152 test.fake --debug ERROR
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
2024-03-20 10:25:10,396 405        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-03-20 10:25:10,418 427        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 5d76f93745031c4c579e0858696ff3253aab48bb date: 20 March 2024
Image:152
Other imported objects:
Fileset:152

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.763
+ (( j++  ))
+ (( j<=2 ))
+ (( i++  ))
+ (( i<=1 ))
+ (( j=1 ))
+ (( j<=2 ))
+ omero obj new Dataset 'name=Orphaned dataset 1'
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
Dataset:153
+ (( j++  ))
+ (( j<=2 ))
+ omero obj new Dataset 'name=Orphaned dataset 2'
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
Dataset:154
+ (( j++  ))
+ (( j<=2 ))
+ echo 'Importing image file'
Importing image file
+ touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
+ omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
++ sed -n -e 's/^Image://p' image_import.log
+ imageid=153
++ omero obj new MapAnnotation
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
+ MAP=MapAnnotation:151
+ omero obj map-set MapAnnotation:151 mapValue testkey testvalue
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
MapAnnotation:151
+ omero obj new ImageAnnotationLink parent=Image:153 child=MapAnnotation:151
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
ImageAnnotationLink:151
++ omero obj new Screen name=Screen
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
+ screen=Screen:151
++ omero obj new Plate name=Plate
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
+ plate=Plate:151
+ omero obj new ScreenPlateLink parent=Screen:151 child=Plate:151
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
ScreenPlateLink:151
+ echo 'Importing SPW file'
Importing SPW file
+ touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
+ omero import -r Screen:151 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
++ sed -n -e 's/^Plate://p' plate_import.log
+ plateid=152
+ omero logout
+ omero login training_user-2@7ef93461c40d:4064 -w ome -g training_group
Created session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
+ omero obj new Project 'name=Project 0'
Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
Project:152
+ omero obj new Dataset 'name=Dataset 0'
Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
Dataset:155
+ omero import test.fake --debug ERROR
Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
2024-03-20 10:25:47,690 314        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-03-20 10:25:47,709 333        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 5d76f93745031c4c579e0858696ff3253aab48bb date: 20 March 2024
Image:157
Other imported objects:
Fileset:155

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.109
+ omero obj new Screen name=Screen
Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
Screen:152
+ omero obj new Plate name=Plate
Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
Plate:153
+ omero login training_user@7ef93461c40d:4064 -w ome -g training_group-2
Created session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
+ omero obj new Project 'name=Project 0'
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
Project:153
+ omero obj new Dataset 'name=Dataset 0'
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
Dataset:156
+ omero import test.fake --debug ERROR
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
2024-03-20 10:25:57,731 320        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
2024-03-20 10:25:57,751 340        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 5d76f93745031c4c579e0858696ff3253aab48bb date: 20 March 2024
Image:158
Other imported objects:
Fileset:156

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.578
+ omero obj new Screen name=Screen
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
Screen:153
+ omero obj new Plate name=Plate
Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
Plate:154
+ omero logout
+ echo omero.host=7ef93461c40d
+ echo omero.port=4064
+ echo omero.webhost=http://nginx/web
+ echo omero.servername=omero
+ echo omero.user=training_user
+ echo omero.pass=ome
+ echo omero.group=training_group
+ echo omero.projectid=151
+ echo omero.datasetid=152
+ echo omero.imageid=153
+ echo omero.plateid=152
+ echo omero.screenid=151
+ echo omero.group2=training_group-2
+ echo omero.ladmin=ladmin_user
+ rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
+ mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
+ omero sessions clear
1 session(s) cleared
!! 03/20/24 10:26:06.768 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
+ ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
+ pip install --upgrade requests
Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0)
Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.6)
Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18)
Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2)
+ python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
Running training suite
created 20 shapes
retrieved 20 shapes in 4 batches
Current user:
   ID: 2
   Username: training_user
   Full Name: training_user training_user
   Is Admin: False
[]
Member of:
   ID: 3  Name: training_group
   ID: 4  Name: training_group-2
Current group:  training_group
   Group owners:
   Group members:
     ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
     ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
     ID: 2 UserName: training_user Name: training_user training_user
Owner of:
Admins:
   ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
   ID: 0 UserName: root Name: root root
Created new Image:159 Name:"numpy image"
newPlane for z,t: 0 0 uint8 0 127
newPlane for z,t: 0 1 uint8 0 127
newPlane for z,t: 0 2 uint8 0 127
newPlane for z,t: 0 3 uint8 0 127
newPlane for z,t: 0 4 uint8 0 127
newPlane for z,t: 0 5 uint8 0 127
newPlane for z,t: 0 6 uint8 0 127
newPlane for z,t: 0 7 uint8 0 127
newPlane for z,t: 0 8 uint8 0 127
newPlane for z,t: 0 9 uint8 0 127
newPlane for z,t: 1 0 uint8 0 127
newPlane for z,t: 1 1 uint8 0 127
newPlane for z,t: 1 2 uint8 0 127
newPlane for z,t: 1 3 uint8 0 127
newPlane for z,t: 1 4 uint8 0 127
newPlane for z,t: 1 5 uint8 0 127
newPlane for z,t: 1 6 uint8 0 127
newPlane for z,t: 1 7 uint8 0 127
newPlane for z,t: 1 8 uint8 0 127
newPlane for z,t: 1 9 uint8 0 127
newPlane for z,t: 2 0 uint8 0 127
newPlane for z,t: 2 1 uint8 0 127
newPlane for z,t: 2 2 uint8 0 127
newPlane for z,t: 2 3 uint8 0 127
newPlane for z,t: 2 4 uint8 0 127
newPlane for z,t: 2 5 uint8 0 127
newPlane for z,t: 2 6 uint8 0 127
newPlane for z,t: 2 7 uint8 0 127
newPlane for z,t: 2 8 uint8 0 127
newPlane for z,t: 2 9 uint8 0 127
newPlane for z,t: 3 0 uint8 0 127
newPlane for z,t: 3 1 uint8 0 127
newPlane for z,t: 3 2 uint8 0 127
newPlane for z,t: 3 3 uint8 0 127
newPlane for z,t: 3 4 uint8 0 127
newPlane for z,t: 3 5 uint8 0 127
newPlane for z,t: 3 6 uint8 0 127
newPlane for z,t: 3 7 uint8 0 127
newPlane for z,t: 3 8 uint8 0 127
newPlane for z,t: 3 9 uint8 0 127
newPlane for z,t: 4 0 uint8 0 127
newPlane for z,t: 4 1 uint8 0 127
newPlane for z,t: 4 2 uint8 0 127
newPlane for z,t: 4 3 uint8 0 127
newPlane for z,t: 4 4 uint8 0 127
newPlane for z,t: 4 5 uint8 0 127
newPlane for z,t: 4 6 uint8 0 127
newPlane for z,t: 4 7 uint8 0 127
newPlane for z,t: 4 8 uint8 0 127
newPlane for z,t: 4 9 uint8 0 127
Deleting, please wait.
Error? False
153 test&sizeT=10&sizeZ=5&sizeC=3.fake
training_user_2/Blitz-0-Ice.ThreadPool.Server-3/2024-03/20/10-25-20.782/ test&sizeT=10&sizeZ=5&sizeC=3.fake
1
training_user_2/Blitz-0-Ice.ThreadPool.Server-3/2024-03/20/10-25-20.782/ test&sizeT=10&sizeZ=5&sizeC=3.fake
Current group:  training_group
Permissions: READ-ONLY (rwr---)
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 1 Owner:  training_user training_user
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Project 0 Owner:  training_user-2 training_user-2
Image:  <_ImageWrapper id=153>
Image:  <_ImageWrapper id=153> Group:  training_group 3
Image:  <_ImageWrapper id=153> Channel:  0
Channel:  1
Channel:  2


original_metadata
global_metadata
series_metadata

Plane at zct:  0 0 0
[[  0   0   0 ... 253 254 255]
 [  0   0   0 ... 253 254 255]
 [  0   0   0 ... 253 254 255]
 ...
 [  0   1   2 ... 253 254 255]
 [  0   1   2 ... 253 254 255]
 [  0   1   2 ... 253 254 255]]
shape:  (512, 512)
min: 0  max: 255 pixel type: uint8

Z stack of tiles:
Tile: (0, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (1, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (2, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (3, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450
Tile: (4, 0, 0, (50, 50, 10, 10))  min: 50  max: 59  sum: 5450

Hyper stack of planes:
plane zct: (2, 0, 0)  min: 0  max: 255
plane zct: (2, 0, 1)  min: 0  max: 255
plane zct: (2, 0, 2)  min: 0  max: 255
plane zct: (2, 0, 3)  min: 0  max: 255
plane zct: (2, 0, 4)  min: 0  max: 255
plane zct: (2, 0, 5)  min: 0  max: 255
plane zct: (2, 0, 6)  min: 0  max: 255
plane zct: (2, 0, 7)  min: 0  max: 255
plane zct: (2, 0, 8)  min: 0  max: 255
plane zct: (2, 0, 9)  min: 0  max: 255
plane zct: (2, 1, 0)  min: 0  max: 255
plane zct: (2, 1, 1)  min: 0  max: 255
plane zct: (2, 1, 2)  min: 0  max: 255
plane zct: (2, 1, 3)  min: 0  max: 255
plane zct: (2, 1, 4)  min: 0  max: 255
plane zct: (2, 1, 5)  min: 0  max: 255
plane zct: (2, 1, 6)  min: 0  max: 255
plane zct: (2, 1, 7)  min: 0  max: 255
plane zct: (2, 1, 8)  min: 0  max: 255
plane zct: (2, 1, 9)  min: 0  max: 255
plane zct: (2, 2, 0)  min: 0  max: 255
plane zct: (2, 2, 1)  min: 0  max: 255
plane zct: (2, 2, 2)  min: 0  max: 255
plane zct: (2, 2, 3)  min: 0  max: 255
plane zct: (2, 2, 4)  min: 0  max: 255
plane zct: (2, 2, 5)  min: 0  max: 255
plane zct: (2, 2, 6)  min: 0  max: 255
plane zct: (2, 2, 7)  min: 0  max: 255
plane zct: (2, 2, 8)  min: 0  max: 255
plane zct: (2, 2, 9)  min: 0  max: 255
plane zct: (3, 0, 0)  min: 0  max: 255
plane zct: (3, 0, 1)  min: 0  max: 255
plane zct: (3, 0, 2)  min: 0  max: 255
plane zct: (3, 0, 3)  min: 0  max: 255
plane zct: (3, 0, 4)  min: 0  max: 255
plane zct: (3, 0, 5)  min: 0  max: 255
plane zct: (3, 0, 6)  min: 0  max: 255
plane zct: (3, 0, 7)  min: 0  max: 255
plane zct: (3, 0, 8)  min: 0  max: 255
plane zct: (3, 0, 9)  min: 0  max: 255
plane zct: (3, 1, 0)  min: 0  max: 255
plane zct: (3, 1, 1)  min: 0  max: 255
plane zct: (3, 1, 2)  min: 0  max: 255
plane zct: (3, 1, 3)  min: 0  max: 255
plane zct: (3, 1, 4)  min: 0  max: 255
plane zct: (3, 1, 5)  min: 0  max: 255
plane zct: (3, 1, 6)  min: 0  max: 255
plane zct: (3, 1, 7)  min: 0  max: 255
plane zct: (3, 1, 8)  min: 0  max: 255
plane zct: (3, 1, 9)  min: 0  max: 255
plane zct: (3, 2, 0)  min: 0  max: 255
plane zct: (3, 2, 1)  min: 0  max: 255
plane zct: (3, 2, 2)  min: 0  max: 255
plane zct: (3, 2, 3)  min: 0  max: 255
plane zct: (3, 2, 4)  min: 0  max: 255
plane zct: (3, 2, 5)  min: 0  max: 255
plane zct: (3, 2, 6)  min: 0  max: 255
plane zct: (3, 2, 7)  min: 0  max: 255
plane zct: (3, 2, 8)  min: 0  max: 255
plane zct: (3, 2, 9)  min: 0  max: 255
plane zct: (4, 0, 0)  min: 0  max: 255
plane zct: (4, 0, 1)  min: 0  max: 255
plane zct: (4, 0, 2)  min: 0  max: 255
plane zct: (4, 0, 3)  min: 0  max: 255
plane zct: (4, 0, 4)  min: 0  max: 255
plane zct: (4, 0, 5)  min: 0  max: 255
plane zct: (4, 0, 6)  min: 0  max: 255
plane zct: (4, 0, 7)  min: 0  max: 255
plane zct: (4, 0, 8)  min: 0  max: 255
plane zct: (4, 0, 9)  min: 0  max: 255
plane zct: (4, 1, 0)  min: 0  max: 255
plane zct: (4, 1, 1)  min: 0  max: 255
plane zct: (4, 1, 2)  min: 0  max: 255
plane zct: (4, 1, 3)  min: 0  max: 255
plane zct: (4, 1, 4)  min: 0  max: 255
plane zct: (4, 1, 5)  min: 0  max: 255
plane zct: (4, 1, 6)  min: 0  max: 255
plane zct: (4, 1, 7)  min: 0  max: 255
plane zct: (4, 1, 8)  min: 0  max: 255
plane zct: (4, 1, 9)  min: 0  max: 255
plane zct: (4, 2, 0)  min: 0  max: 255
plane zct: (4, 2, 1)  min: 0  max: 255
plane zct: (4, 2, 2)  min: 0  max: 255
plane zct: (4, 2, 3)  min: 0  max: 255
plane zct: (4, 2, 4)  min: 0  max: 255
plane zct: (4, 2, 5)  min: 0  max: 255
plane zct: (4, 2, 6)  min: 0  max: 255
plane zct: (4, 2, 7)  min: 0  max: 255
plane zct: (4, 2, 8)  min: 0  max: 255
plane zct: (4, 2, 9)  min: 0  max: 255
<string>:150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
{0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}

List Projects:
==================================================
Project:1  Name:"Project 1" (owner=training_user)
  Dataset:1  Name:"Dataset 1-1" (owner=training_user)
    Image:1  Name:"test.fake" (owner=training_user)
  Dataset:2  Name:"Dataset 1-2" (owner=training_user)
    Image:12  Name:"New Image" (owner=training_user)
    Image:13  Name:"newImageFrom3" (owner=training_user)
    Image:2  Name:"test.fake" (owner=training_user)
  Dataset:7  Name:"New Dataset" (owner=training_user)
  Dataset:17  Name:"new Name 1" (owner=training_user)
  Dataset:18  Name:"new Name 2" (owner=training_user)
Project:51  Name:"Project 1" (owner=training_user)
  Dataset:51  Name:"Dataset 1-1" (owner=training_user)
    Image:51  Name:"test.fake" (owner=training_user)
  Dataset:52  Name:"Dataset 1-2" (owner=training_user)
    Image:62  Name:"New Image" (owner=training_user)
    Image:63  Name:"newImageFrom53" (owner=training_user)
    Image:52  Name:"test.fake" (owner=training_user)
  Dataset:57  Name:"New Dataset" (owner=training_user)
  Dataset:67  Name:"new Name 1" (owner=training_user)
  Dataset:68  Name:"new Name 2" (owner=training_user)
Project:101  Name:"Project 1" (owner=training_user)
  Dataset:101  Name:"Dataset 1-1" (owner=training_user)
    Image:101  Name:"test.fake" (owner=training_user)
  Dataset:102  Name:"Dataset 1-2" (owner=training_user)
    Image:112  Name:"New Image" (owner=training_user)
    Image:113  Name:"newImageFrom103" (owner=training_user)
    Image:102  Name:"test.fake" (owner=training_user)
  Dataset:107  Name:"New Dataset" (owner=training_user)
  Dataset:117  Name:"new Name 1" (owner=training_user)
  Dataset:118  Name:"new Name 2" (owner=training_user)
Project:151  Name:"Project 1" (owner=training_user)
  Dataset:151  Name:"Dataset 1-1" (owner=training_user)
    Image:151  Name:"test.fake" (owner=training_user)
  Dataset:152  Name:"Dataset 1-2" (owner=training_user)
    Image:152  Name:"test.fake" (owner=training_user)

List orphaned Datasets: 
 ==================================================
Dataset:3  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:4  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:5  Name:"Dataset 0" (owner=training_user-2)
Dataset:53  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:54  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:55  Name:"Dataset 0" (owner=training_user-2)
Dataset:10  Name:"MyDataset" (owner=training_user)
Dataset:9  Name:"MyDataset" (owner=training_user)
Dataset:8  Name:"MyDataset" (owner=training_user)
Dataset:11  Name:"New Dataset" (owner=training_user)
Dataset:12  Name:"New Dataset2" (owner=training_user)
Dataset:13  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:14  Name:"MyDataset" (owner=training_user)
Dataset:15  Name:"MyDataset" (owner=training_user)
Dataset:16  Name:"MyDataset" (owner=training_user)
Dataset:60  Name:"MyDataset" (owner=training_user)
Dataset:59  Name:"MyDataset" (owner=training_user)
Dataset:58  Name:"MyDataset" (owner=training_user)
Dataset:61  Name:"New Dataset" (owner=training_user)
Dataset:62  Name:"New Dataset2" (owner=training_user)
Dataset:63  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:64  Name:"MyDataset" (owner=training_user)
Dataset:65  Name:"MyDataset" (owner=training_user)
Dataset:66  Name:"MyDataset" (owner=training_user)
Dataset:103  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:104  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:105  Name:"Dataset 0" (owner=training_user-2)
Dataset:110  Name:"MyDataset" (owner=training_user)
Dataset:109  Name:"MyDataset" (owner=training_user)
Dataset:108  Name:"MyDataset" (owner=training_user)
Dataset:111  Name:"New Dataset" (owner=training_user)
Dataset:112  Name:"New Dataset2" (owner=training_user)
Dataset:113  Name:"FileAnnotationDelete" (owner=training_user)
Dataset:114  Name:"MyDataset" (owner=training_user)
Dataset:115  Name:"MyDataset" (owner=training_user)
Dataset:116  Name:"MyDataset" (owner=training_user)
Dataset:153  Name:"Orphaned dataset 1" (owner=training_user)
Dataset:154  Name:"Orphaned dataset 2" (owner=training_user)
Dataset:155  Name:"Dataset 0" (owner=training_user-2)

Images in Dataset: 152 
 ==================================================
Image:152  Name:"test.fake" (owner=training_user)

Image:153
==================================================
test&sizeT=10&sizeZ=5&sizeC=3.fake 
 X: 512
 Y: 512
 Z: 5
 C: 3
 T: 10
Channel: 0 Color: (255, 0, 0)
Lookup table: None
Is reverse intensity? False
Channel: 1 Color: (0, 255, 0)
Lookup table: None
Is reverse intensity? False
Channel: 2 Color: (0, 0, 255)
Lookup table: None
Is reverse intensity? False
 Pixel Size X: None

List Screens:
==================================================
Screen:151  Name:"Screen" (owner=training_user)
  Plate:151  Name:"Plate" (owner=training_user)
  Plate:152  Name:"Plate Name 0" (owner=training_user)
Screen:101  Name:"Screen" (owner=training_user)
  Plate:101  Name:"Plate" (owner=training_user)
  Plate:102  Name:"Plate Name 0" (owner=training_user)
Screen:51  Name:"Screen" (owner=training_user)
  Plate:51  Name:"Plate" (owner=training_user)
  Plate:52  Name:"Plate Name 0" (owner=training_user)
Screen:1  Name:"Screen" (owner=training_user)
  Plate:1  Name:"Plate" (owner=training_user)
  Plate:2  Name:"Plate Name 0" (owner=training_user)
Screen:152  Name:"Screen" (owner=training_user-2)
Screen:102  Name:"Screen" (owner=training_user-2)
Screen:52  Name:"Screen" (owner=training_user-2)
Screen:2  Name:"Screen" (owner=training_user-2)

Plate:152
==================================================

Number of fields: (0, 0)

Grid size: {'rows': 1, 'columns': 3}

Wells in Plate: Plate Name 0
  Well:  0 0  Fields: 1
    Image:  SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 154
  Well:  0 1  Fields: 1
    Image:  SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 156
  Well:  0 2  Fields: 1
    Image:  SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 155
151 <class 'omero.model.MapAnnotationI'>
 added by  training_user
Image ID: 153
Annotation ID: 151
153
Channel rendering settings:
Name:  0
  Color: FF0000
  Active: True
  Levels: 0.0 - 255.0
Name:  1
  Color: 00FF00
  Active: True
  Levels: 0.0 - 255.0
Name:  2
  Color: 0000FF
  Active: True
  Levels: 0.0 - 255.0
isGreyscaleRenderingModel: False
Default Z/T positions:
    Z = 2, T = 0
Rendering Defs on Image:
   ID: 153 (owner: training_user training_user)
Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
ROI:  ID: 152
   Shape:    id 171    theT 0    theZ 2    textValue test-Rectangle    type Rectangle    x 50.0    y 200.0    width 100.0    height 50.0 
   Shape:    id 172    theT 0    theZ 2    textValue test-Ellipse    type Ellipse    x 200.0    y 50.0    radiusX 100.0    radiusY 50.0 
ROI:  ID: 153
   Shape:    id 173    theT 0    theZ 2    textValue test-Line    type Line    x1 50.0    x2 150.0    y1 200.0    y2 250.0 
ROI:  ID: 154
   Shape:    id 174    theT 0    theZ 0    textValue test-Mask    type Mask    x 50.0    y 50.0    width 100.0    height 100.0 
ROI:  ID: 155
   Shape:    id 175    theT 0    theZ 2    textValue test-Point    type Point    x 50.0    y 200.0 
ROI:  ID: 156
<class 'omero.model.PolygonI'>  Not supported by this code
   Shape:    id 176    theT 0    theZ 2    textValue test-Polygon 
Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
Removing Shape from ROI...
Deleting ROI: 157
Table Columns:
    Uid
    MyStringColumnInit
Row count: 10

Get All Data for rows:  [3, 5, 7]
Data for Column:  Uid
    1
    2
    3
    4
    5
    6
    7
    8
    9
    10
Data for Column:  MyStringColumnInit
    one
    two
    three
    four
    five
    six
    seven
    eight
    nine
    ten

Get All Data for rows with slice:  [3, 5, 7]
Data for Column:  Uid
    4
    6
    8
Data for Column:  MyStringColumnInit
    four
    six
    eight

Get Data for cols:  [1]  and between rows:  3 - 7
Data for Column:  MyStringColumnInit
    four
    five
    six
    seven

Get Data for cols:  [1]  and between rows:  3 - 7  with slice
Data for Column:  MyStringColumnInit
    four
    five
    six
    seven
Query Results for Column:  Uid
    3
    4
    5
    6
    7
    8
Query Results for Column:  MyStringColumnInit
    three
    four
    five
    six
    seven
    eight
Opened table with row-count: 10
New dataset, Id: 157
{'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
155 <class 'omero.model.TagAnnotationI'>  added by  training_user
Tag value: New Tag
156 <class 'omero.model.MapAnnotationI'>  added by  training_user

Creating an OriginalFile and FileAnnotation
Attaching FileAnnotation to Dataset:  File ID: 157 , README.txt Size: 15

Annotations on Dataset: New Dataset
File ID: 449 README.txt Size: 15

Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
File downloaded!
7 README.txt
57 README.txt
107 README.txt
157 README.txt
Found Annotation with namespace:  imperial.training.demo
Plane:  0 0 0
Applying channel Names: ['0', '1', '2']  Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
[(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]

List Datasets:
ID: 10 Name: MyDataset
ID: 9 Name: MyDataset
ID: 8 Name: MyDataset
ID: 14 Name: MyDataset
ID: 15 Name: MyDataset
ID: 16 Name: MyDataset
ID: 60 Name: MyDataset
ID: 59 Name: MyDataset
ID: 58 Name: MyDataset
ID: 64 Name: MyDataset
ID: 65 Name: MyDataset
ID: 66 Name: MyDataset
ID: 110 Name: MyDataset
ID: 109 Name: MyDataset
ID: 108 Name: MyDataset
ID: 114 Name: MyDataset
ID: 115 Name: MyDataset
ID: 116 Name: MyDataset
ID: 160 Name: MyDataset
ID: 159 Name: MyDataset
ID: 158 Name: MyDataset

List Tags:
ID: 8 Text: MyTag Desc: MyTag 0
ID: 9 Text: MyTag Desc: MyTag 1
ID: 10 Text: MyTag Desc: MyTag 2
ID: 16 Text: MyTag Desc: MyTag 0
ID: 17 Text: MyTag Desc: MyTag 1
ID: 18 Text: MyTag Desc: MyTag 2
ID: 58 Text: MyTag Desc: MyTag 0
ID: 59 Text: MyTag Desc: MyTag 1
ID: 60 Text: MyTag Desc: MyTag 2
ID: 66 Text: MyTag Desc: MyTag 0
ID: 67 Text: MyTag Desc: MyTag 1
ID: 68 Text: MyTag Desc: MyTag 2
ID: 108 Text: MyTag Desc: MyTag 0
ID: 109 Text: MyTag Desc: MyTag 1
ID: 110 Text: MyTag Desc: MyTag 2
ID: 116 Text: MyTag Desc: MyTag 0
ID: 117 Text: MyTag Desc: MyTag 1
ID: 118 Text: MyTag Desc: MyTag 2
ID: 158 Text: MyTag Desc: MyTag 0
ID: 159 Text: MyTag Desc: MyTag 1
ID: 160 Text: MyTag Desc: MyTag 2
New dataset, Id: 161
New dataset 2, Id: 162
test&sizeT=10&sizeZ=5&sizeC=3.fake
Tile at zct tile:  2.5 0 0 (5, 5, 100, 100)
[[  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 ...
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]]
shape:  (100, 100)
min: 0  max: 104 pixel type: uint8
Average : 53.9125
Getting data for T, tile: 0 (256.0, 0, 10, 512)
Getting data for T, tile: 1 (256.0, 0, 10, 512)
Getting data for T, tile: 2 (256.0, 0, 10, 512)
Getting data for T, tile: 3 (256.0, 0, 10, 512)
Getting data for T, tile: 4 (256.0, 0, 10, 512)
Getting data for T, tile: 5 (256.0, 0, 10, 512)
Getting data for T, tile: 6 (256.0, 0, 10, 512)
Getting data for T, tile: 7 (256.0, 0, 10, 512)
Getting data for T, tile: 8 (256.0, 0, 10, 512)
Getting data for T, tile: 9 (256.0, 0, 10, 512)
kymograph_data (512, 100)
Attaching kymograph.png to image
test&sizeT=10&sizeZ=5&sizeC=3.fake
Tile at zct tile:  2.5 0 0 (5, 5, 100, 100)
[[  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 [  0   0   0 ... 102 103 104]
 ...
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]
 [  5   6   7 ... 102 103 104]]
shape:  (100, 100)
min: 0  max: 104 pixel type: uint8
Average : 53.9125
Getting data for T, tile: 0 (256.0, 0, 10, 512)
Getting data for T, tile: 1 (256.0, 0, 10, 512)
Getting data for T, tile: 2 (256.0, 0, 10, 512)
Getting data for T, tile: 3 (256.0, 0, 10, 512)
Getting data for T, tile: 4 (256.0, 0, 10, 512)
Getting data for T, tile: 5 (256.0, 0, 10, 512)
Getting data for T, tile: 6 (256.0, 0, 10, 512)
Getting data for T, tile: 7 (256.0, 0, 10, 512)
Getting data for T, tile: 8 (256.0, 0, 10, 512)
Getting data for T, tile: 9 (256.0, 0, 10, 512)
kymograph_data (512, 100)
Attaching kymograph.png to image
No file downloaded. Project not rated.
New image, Id: 162
Starting at: http://nginx/web/api/
CSRF token hxfps2DexTcglWntjhoi2wihtgkxYe3aw92C2tiDJmGmZL80j1SW9DKqbpxk3Ern
Servers:
-id: 1
 name: omero
 host: omero
 port: 4064
-id: 2
 name: testintegration
 host: testintegration
 port: 14064
eventContext {'sessionId': 668, 'sessionUuid': '3c69e060-0235-4778-b0ea-3bf78cccd8ab', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
Projects:
   2 Project 0
   3 Project 0
Created Project: 156 API TEST foo
{'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 156, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/156/datasets/'}}
!! 03/20/24 10:26:36.275 error: communicator not destroyed during global destruction.+ deactivate
+ '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
+ PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+ export PATH
+ unset _OLD_VIRTUAL_PATH
+ '[' -n '' ']'
+ '[' -n /bin/bash -o -n '' ']'
+ hash -r
+ '[' -n '' ']'
+ unset VIRTUAL_ENV
+ '[' '!' '' = nondestructive ']'
+ unset -f deactivate
+ cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
+ javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
+ java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
omero.cmd.Delete2Response@73c60324
omero.cmd.Delete2Response@28276e50
one [class java.lang.String]	1.0 [class java.lang.Double]	
two [class java.lang.String]	2.0 [class java.lang.Double]	
three [class java.lang.String]	3.0 [class java.lang.Double]	
-1.0
0
1
2
   0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
   1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
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   6 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
   7 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
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  37 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  38 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  39 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  40 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  41 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  42 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  43 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  44 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  45 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  46 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  47 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  48 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  49 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                  1014
  50 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
  51 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
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  54 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
  55 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
  56 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
  57 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
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  63 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]                                 1024
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Project:151 Project 1
dataset:152 Dataset 1-2
dataset:157 New Dataset
dataset:151 Dataset 1-1
Project:102 Project 0
Project:1 Project 1
dataset:18 new Name 2
dataset:2 Dataset 1-2
dataset:7 New Dataset
dataset:17 new Name 1
dataset:1 Dataset 1-1
Project:101 Project 1
dataset:107 New Dataset
dataset:102 Dataset 1-2
dataset:101 Dataset 1-1
dataset:117 new Name 1
dataset:118 new Name 2
Project:2 Project 0
Project:51 Project 1
dataset:57 New Dataset
dataset:52 Dataset 1-2
dataset:68 new Name 2
dataset:51 Dataset 1-1
dataset:67 new Name 1
Project:52 Project 0
Project:152 Project 0
image:152 test.fake
image:162 New Image
image:163 newImageFrom153
5
10
3
512
512
screen:52 Screen
screen:152 Screen
screen:2 Screen
screen:102 Screen
screen:151 Screen
plate:151 Plate
plate:152 Plate Name 0
screen:1 Screen
plate:2 Plate Name 0
plate:1 Plate
screen:51 Screen
plate:51 Plate
plate:52 Plate Name 0
screen:101 Screen
plate:102 Plate Name 0
plate:101 Plate
well:153
well:152
well:151
plate:103
plate:3
plate:102
plate:152
plate:1
plate:101
plate:51
plate:151
plate:53
plate:153
plate:52
plate:2

List Datasets:
ID: 8 Name: MyDataset
ID: 9 Name: MyDataset
ID: 10 Name: MyDataset
ID: 14 Name: MyDataset
ID: 15 Name: MyDataset
ID: 16 Name: MyDataset
ID: 58 Name: MyDataset
ID: 59 Name: MyDataset
ID: 60 Name: MyDataset
ID: 64 Name: MyDataset

List Tags:
ID: 16 NS: omero.training.demo
ID: 17 NS: omero.training.demo
ID: 18 NS: omero.training.demo
ID: 66 NS: omero.training.demo
ID: 67 NS: omero.training.demo
ID: 68 NS: omero.training.demo
ID: 116 NS: omero.training.demo
ID: 117 NS: omero.training.demo
ID: 118 NS: omero.training.demo
ID: 166 NS: omero.training.demo
Dataset:3 Orphaned dataset 1
Dataset:53 Orphaned dataset 1
Dataset:64 MyDataset
Dataset:110 MyDataset
Dataset:158 MyDataset
Dataset:111 New Dataset
Dataset:115 MyDataset
Dataset:62 New Dataset2
Dataset:9 MyDataset
Dataset:153 Orphaned dataset 1
Dataset:65 MyDataset
Dataset:103 Orphaned dataset 1
Dataset:63 FileAnnotationDelete
Project:151 Project 1
Dataset:61 New Dataset
Project:51 Project 1
Project:101 Project 1
Dataset:54 Orphaned dataset 2
Dataset:12 New Dataset2
Dataset:58 MyDataset
Dataset:15 MyDataset
Dataset:108 MyDataset
Dataset:165 MyDataset
Dataset:166 MyDataset
Dataset:164 MyDataset
Dataset:160 MyDataset
Dataset:66 MyDataset
Dataset:59 MyDataset
Dataset:163 FileAnnotationDelete
Project:1 Project 1
Dataset:13 FileAnnotationDelete
Dataset:60 MyDataset
Dataset:104 Orphaned dataset 2
Dataset:162 New Dataset2
Dataset:161 New Dataset
Dataset:4 Orphaned dataset 2
Dataset:14 MyDataset
Dataset:112 New Dataset2
Dataset:159 MyDataset
Dataset:116 MyDataset
Dataset:10 MyDataset
Dataset:16 MyDataset
Dataset:154 Orphaned dataset 2
Dataset:113 FileAnnotationDelete
Dataset:109 MyDataset
Dataset:114 MyDataset
Dataset:11 New Dataset
Dataset:8 MyDataset
Size:0
512 512
9
9
1
Logged in as ladmin_user
Added 'training_user's tag' to dataset New Dataset on behalf of training_user
Added 'ladmin_user's tag' to dataset New Dataset as admin.
Finished: SUCCESS