Started by upstream project "Trigger" build number 15 originally caused by: Started by timer Running as SYSTEM Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training [OMERO-training] $ /bin/bash -xe /tmp/jenkins15417835521637872706.sh + rm -rf /home/omero/workspace/OMERO-training/.venv3 + python3 -m venv /home/omero/workspace/OMERO-training/.venv3 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) Installing collected packages: zeroc-ice Successfully installed zeroc-ice-3.6.5 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. You should consider upgrading via the '/home/omero/workspace/OMERO-training/.venv3/bin/python3 -m pip install --upgrade pip' command. + pip install -U pip future setuptools Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) Collecting pip Using cached pip-24.0-py3-none-any.whl (2.1 MB) Collecting future Using cached future-1.0.0-py3-none-any.whl (491 kB) Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0) Collecting setuptools Using cached setuptools-69.2.0-py3-none-any.whl (821 kB) Installing collected packages: setuptools, pip, future Attempting uninstall: setuptools Found existing installation: setuptools 53.0.0 Uninstalling setuptools-53.0.0: Successfully uninstalled setuptools-53.0.0 Attempting uninstall: pip Found existing installation: pip 21.2.3 Uninstalling pip-21.2.3: Successfully uninstalled pip-21.2.3 Successfully installed future-1.0.0 pip-24.0 setuptools-69.2.0 + pip install markdown Collecting markdown Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) Collecting importlib-metadata>=4.4 (from markdown) Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB) Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) Using cached Markdown-3.6-py3-none-any.whl (105 kB) Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB) Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) Installing collected packages: zipp, importlib-metadata, markdown Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1 + pip install mox3 pytest 'pytest-xdist<2' Collecting mox3 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB) Collecting pytest Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB) Collecting pytest-xdist<2 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB) Collecting pbr!=2.1.0,>=2.0.0 (from mox3) Using cached pbr-6.0.0-py2.py3-none-any.whl.metadata (1.3 kB) Collecting fixtures>=3.0.0 (from mox3) Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB) Collecting iniconfig (from pytest) Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB) Collecting packaging (from pytest) Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) Collecting pluggy<2.0,>=1.4 (from pytest) Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB) Collecting exceptiongroup>=1.0.0rc8 (from pytest) Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB) Collecting tomli>=1 (from pytest) Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB) Collecting execnet>=1.1 (from pytest-xdist<2) Using cached execnet-2.0.2-py3-none-any.whl.metadata (2.9 kB) Collecting pytest-forked (from pytest-xdist<2) Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB) Collecting six (from pytest-xdist<2) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting py (from pytest-forked->pytest-xdist<2) Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB) Using cached mox3-1.1.0-py3-none-any.whl (43 kB) Using cached pytest-8.1.1-py3-none-any.whl (337 kB) Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB) Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB) Using cached execnet-2.0.2-py3-none-any.whl (37 kB) Using cached fixtures-4.1.0-py3-none-any.whl (64 kB) Using cached pbr-6.0.0-py2.py3-none-any.whl (107 kB) Using cached pluggy-1.4.0-py3-none-any.whl (20 kB) Using cached tomli-2.0.1-py3-none-any.whl (12 kB) Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB) Using cached packaging-24.0-py3-none-any.whl (53 kB) Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Using cached py-1.11.0-py2.py3-none-any.whl (98 kB) Installing collected packages: tomli, six, py, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-forked, mox3, pytest-xdist Successfully installed exceptiongroup-1.2.0 execnet-2.0.2 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.0 pbr-6.0.0 pluggy-1.4.0 py-1.11.0 pytest-8.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.16.0 tomli-2.0.1 + pip install tables Collecting tables Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) Collecting numpy>=1.19.0 (from tables) Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Collecting numexpr>=2.6.2 (from tables) Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.0) Collecting py-cpuinfo (from tables) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting blosc2>=2.3.0 (from tables) Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 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numexpr-2.9.0 numpy-1.26.4 py-cpuinfo-9.0.0 tables-3.9.2 + pip install jinja2 Collecting jinja2 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) Collecting MarkupSafe>=2.0 (from jinja2) Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Installing collected packages: MarkupSafe, jinja2 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-py-5.19.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties Copied 5 artifacts from "OMERO-python-superbuild-build" build number 12 Copied 2 artifacts from "OMERO-build" build number 12 Copied 2 artifacts from "OMERO-build-build" build number 12 [OMERO-training] $ /bin/bash -xe /tmp/jenkins3909714029125955138.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties + 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inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql creating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.0__0/ inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql creating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.1__1/ inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql creating: 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openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/psql-footer.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/psql-header.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/schema.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/views.sql inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/test.xml inflating: openmicroscopy-5.6.3-437-ef9fea1806-ice36/update_dependencies.sh extracting: openmicroscopy-5.6.3-437-ef9fea1806-ice36/components/antlib/resources/gitversion.xml extracting: openmicroscopy-5.6.3-437-ef9fea1806-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake + rm -f openmicroscopy-5.6.3-437-ef9fea1806-ice36.zip + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-437-ef9fea1806-ice36 /home/omero/workspace/OMERO-training/openmicroscopy + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server ++ ls OMERO.server-5.6.3-437-ef9fea1806-ice36.zip + ZIP=OMERO.server-5.6.3-437-ef9fea1806-ice36.zip + DIST=OMERO.server-5.6.3-437-ef9fea1806-ice36 + unzip -n OMERO.server-5.6.3-437-ef9fea1806-ice36.zip Archive: OMERO.server-5.6.3-437-ef9fea1806-ice36.zip creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/blitz/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/grid/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/profiles/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/templates/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/templates/error/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/templates/grid/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/client/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/luts/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/luts/janelia/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/luts/ncsa_paledit/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/luts/wcif/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/omero/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/omero/analysis_scripts/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/omero/annotation_scripts/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/omero/export_scripts/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/omero/figure_scripts/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/omero/import_scripts/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/scripts/omero/util_scripts/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/lib/server/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/share/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/share/licenses/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/misc/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO3A__1/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO3A__10/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO3A__11/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO3A__2/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO3A__3/ creating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO3A__4/ creating: 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inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/build.properties inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/env.bat inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/env.sh inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/hibernate.properties inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/ice.config inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/logback-cli.xml inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/logback-indexing-cli.xml inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/logback-indexing.xml inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/logback.xml inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/mime.types inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/node1.cfg inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/node2.cfg inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/omero.properties inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/etc/profiles/psql inflating: 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OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/psql-footer.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/psql-header.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/schema.sql inflating: OMERO.server-5.6.3-437-ef9fea1806-ice36/sql/psql/OMERO5.4__0/views.sql + rm -f OMERO.server-5.6.3-437-ef9fea1806-ice36.zip + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-437-ef9fea1806-ice36 /home/omero/workspace/OMERO-training/OMERO.server + source /home/omero/workspace/OMERO-training/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + for x in *.gz + pip install omero-dropbox-5.6.3.dev0.tar.gz Processing ./omero-dropbox-5.6.3.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting omero-py (from omero-dropbox==5.6.3.dev0) Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB) Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0) Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0) Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4) Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0) Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB) Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5) Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0) Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0) Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB) Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0) Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0) Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB) Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Using cached portalocker-2.8.2-py3-none-any.whl (17 kB) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) Using cached requests-2.31.0-py3-none-any.whl (62 kB) Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) Using cached idna-3.6-py3-none-any.whl (61 kB) Building wheels for collected packages: omero-dropbox Building wheel for omero-dropbox (pyproject.toml): started Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=3c856fc944a72ffd3eac3ad337088dfbf873f694b7892e24991b4ec69b359b35 Stored in directory: /home/omero/.cache/pip/wheels/70/da/3d/331719007048e84a6ccfa834fcb865d58e6f5e47143b222b43 Successfully built omero-dropbox Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox Successfully installed Pillow-10.2.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-dropbox-5.6.3.dev0 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18 + for x in *.gz + pip install omero_marshal-0.9.1.dev0.tar.gz Processing ./omero_marshal-0.9.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero_marshal Building wheel for omero_marshal (pyproject.toml): started Building wheel for omero_marshal (pyproject.toml): finished with status 'done' Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=6792ed7010958ddade0890aafe30a91c1ddf98b6558f6d2620d41600369b221e Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35 Successfully built omero_marshal Installing collected packages: omero_marshal Successfully installed omero_marshal-0.9.1.dev0 + for x in *.gz + pip install omero-py-5.19.2.dev0.tar.gz Processing ./omero-py-5.19.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18) Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0) Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.2.0) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0) Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.6) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2) Building wheels for collected packages: omero-py Building wheel for omero-py (pyproject.toml): started Building wheel for omero-py (pyproject.toml): finished with status 'done' Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2781853 sha256=1f03c8a49c2b5e5d74ae2895746173b4b53b93ae1b30c20b9be9288d6575c77e Stored in directory: /home/omero/.cache/pip/wheels/9f/8a/96/ff4bfe740f086274aebfc36457d9e011becbee746485593d12 Successfully built omero-py Installing collected packages: omero-py Attempting uninstall: omero-py Found existing installation: omero-py 5.19.1 Uninstalling omero-py-5.19.1: Successfully uninstalled omero-py-5.19.1 Successfully installed omero-py-5.19.2.dev0 + for x in *.gz + pip install omero-scripts-5.8.1.dev0.tar.gz Processing ./omero-scripts-5.8.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero-scripts Building wheel for omero-scripts (pyproject.toml): started Building wheel for omero-scripts (pyproject.toml): finished with status 'done' Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=c8b8ffcb1198b19a53f56266258c64b97ea1e9fc3174d5673ba3461c76f96f10 Stored in directory: /home/omero/.cache/pip/wheels/bf/20/bf/f0e89c5f6fcd6f4ff1c089bc6b449e017b94b2f6b6c2593196 Successfully built omero-scripts Installing collected packages: omero-scripts Successfully installed omero-scripts-5.8.1.dev0 + for x in *.gz + pip install omero-web-5.25.1.dev0.tar.gz Processing ./omero-web-5.25.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0) Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0) Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0) Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB) Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0) Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0) Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) Collecting django-csp (from omero-web==5.25.1.dev0) Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0) Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB) Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0) Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0) Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0) Collecting pytz (from omero-web==5.25.1.dev0) Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2) Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0) Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB) Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18) Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0) Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0) Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB) Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2) Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) Using cached Django-4.2.11-py3-none-any.whl (8.0 MB) Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB) Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB) Using cached django_csp-3.8-py3-none-any.whl (17 kB) Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB) Building wheels for collected packages: omero-web Building wheel for omero-web (pyproject.toml): started Building wheel for omero-web (pyproject.toml): finished with status 'done' Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=9956fe45c404afd867db898569ec8464edadd36e7ec9a9bdb24972e65658c8b8 Stored in directory: /home/omero/.cache/pip/wheels/27/e6/a8/3c62891eccbd4759036a66343d82d7ebc8ff45e9a0976cd8c7 Successfully built omero-web Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0 + cd /home/omero/workspace/OMERO-training/OMERO.server + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh + HOSTNAME=d6309de3f85a + PORT=4064 + WEBHOST=http://nginx/web + SERVER_NAME=omero + ROOT_PASSWORD=omero + GROUP_NAME=training_group + GROUP_NAME_2=training_group-2 + USER_NAME=training_user + USER_NAME_2=training_user-2 + LIGHTADMIN_USER_NAME=ladmin_user + USER_PASSWORD=ome + CONFIG_FILENAME=training_ice.config + omero login root@d6309de3f85a:4064 -w omero Created session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system + omero group add training_group --type read-only --ignore-existing Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system Group exists: training_group (id=3) + omero group add training_group-2 --type read-only --ignore-existing Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system Group exists: training_group-2 (id=4) + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system User exists: training_user (id=2) + omero user joingroup --name training_user --group-name training_group training_group-2 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system 2 is already in group 3 2 is already in group 4 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system User exists: training_user-2 (id=3) + omero user joingroup --name training_user-2 --group-name training_group training_group-2 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system 3 is already in group 3 3 is already in group 4 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system User exists: ladmin_user (id=4) + omero user joingroup --name ladmin_user --group-name training_group training_group-2 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system 4 is already in group 3 4 is already in group 4 ++ omero user info ladmin_user --style plain ++ cut -d, -f1 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system + id=4 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system Experimenter:4 + omero logout + touch test.fake + omero login training_user@d6309de3f85a:4064 -w ome -g training_group Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + nProjects=1 + nDatasets=2 + echo 'Creating projects and datasets' Creating projects and datasets + (( i=1 )) + (( i<=1 )) ++ omero obj new Project 'name=Project 1' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + project=Project:451 + (( j=1 )) + (( j<=2 )) ++ omero obj new Dataset 'name=Dataset 1-1' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + dataset=Dataset:501 + omero obj new ProjectDatasetLink parent=Project:451 child=Dataset:501 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group ProjectDatasetLink:451 + echo 'Importing image into dataset' Importing image into dataset + omero import -d Dataset:501 test.fake --debug ERROR Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group 2024-03-26 01:10:32,942 691 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT 2024-03-26 01:10:32,984 733 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 07c328269d8581a69c795d970050bbfa0d250837 date: 26 March 2024 Image:2701 Other imported objects: Fileset:2051 ==> Summary 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:05.719 + (( j++ )) + (( j<=2 )) ++ omero obj new Dataset 'name=Dataset 1-2' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + dataset=Dataset:502 + omero obj new ProjectDatasetLink parent=Project:451 child=Dataset:502 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group ProjectDatasetLink:452 + echo 'Importing image into dataset' Importing image into dataset + omero import -d Dataset:502 test.fake --debug ERROR Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group 2024-03-26 01:10:50,113 790 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT 2024-03-26 01:10:50,161 838 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 07c328269d8581a69c795d970050bbfa0d250837 date: 26 March 2024 Image:2702 Other imported objects: Fileset:2052 ==> Summary 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:03.123 + (( j++ )) + (( j<=2 )) + (( i++ )) + (( i<=1 )) + (( j=1 )) + (( j<=2 )) + omero obj new Dataset 'name=Orphaned dataset 1' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Dataset:503 + (( j++ )) + (( j<=2 )) + omero obj new Dataset 'name=Orphaned dataset 2' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Dataset:504 + (( j++ )) + (( j<=2 )) + echo 'Importing image file' Importing image file + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake' + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake' ++ sed -n -e 's/^Image://p' image_import.log + imageid=2703 ++ omero obj new MapAnnotation Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + MAP=MapAnnotation:1551 + omero obj map-set MapAnnotation:1551 mapValue testkey testvalue Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group MapAnnotation:1551 + omero obj new ImageAnnotationLink parent=Image:2703 child=MapAnnotation:1551 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group ImageAnnotationLink:551 ++ omero obj new Screen name=Screen Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + screen=Screen:351 ++ omero obj new Plate name=Plate Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + plate=Plate:451 + omero obj new ScreenPlateLink parent=Screen:351 child=Plate:451 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group ScreenPlateLink:351 + echo 'Importing SPW file' Importing SPW file + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' + omero import -r Screen:351 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' ++ sed -n -e 's/^Plate://p' plate_import.log + plateid=452 + omero logout + omero login training_user-2@d6309de3f85a:4064 -w ome -g training_group Created session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group + omero obj new Project 'name=Project 0' Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Project:452 + omero obj new Dataset 'name=Dataset 0' Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Dataset:505 + omero import test.fake --debug ERROR Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group 2024-03-26 01:11:39,149 304 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT 2024-03-26 01:11:39,167 322 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 07c328269d8581a69c795d970050bbfa0d250837 date: 26 March 2024 Image:2707 Other imported objects: Fileset:2055 ==> Summary 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.311 + omero obj new Screen name=Screen Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Screen:352 + omero obj new Plate name=Plate Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group Plate:453 + omero login training_user@d6309de3f85a:4064 -w ome -g training_group-2 Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 + omero obj new Project 'name=Project 0' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 Project:453 + omero obj new Dataset 'name=Dataset 0' Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 Dataset:506 + omero import test.fake --debug ERROR Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 2024-03-26 01:11:49,765 290 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT 2024-03-26 01:11:49,784 309 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 07c328269d8581a69c795d970050bbfa0d250837 date: 26 March 2024 Image:2708 Other imported objects: Fileset:2056 ==> Summary 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.185 + omero obj new Screen name=Screen Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 Screen:353 + omero obj new Plate name=Plate Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2 Plate:454 + omero logout + echo omero.host=d6309de3f85a + echo omero.port=4064 + echo omero.webhost=http://nginx/web + echo omero.servername=omero + echo omero.user=training_user + echo omero.pass=ome + echo omero.group=training_group + echo omero.projectid=451 + echo omero.datasetid=502 + echo omero.imageid=2703 + echo omero.plateid=452 + echo omero.screenid=351 + echo omero.group2=training_group-2 + echo omero.ladmin=ladmin_user + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake' + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training + omero sessions clear 2 session(s) cleared !! 03/26/24 01:11:59.143 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config + pip install --upgrade requests Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0) Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.6) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18) Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2) + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python Running training suite created 20 shapes retrieved 20 shapes in 4 batches Current user: ID: 2 Username: training_user Full Name: training_user training_user Is Admin: False [] Member of: ID: 3 Name: training_group ID: 4 Name: training_group-2 Current group: training_group Group owners: Group members: ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user ID: 2 UserName: training_user Name: training_user training_user Owner of: Admins: ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user ID: 113 UserName: Name: ID: 0 UserName: root Name: root root ID: 119 UserName: Name: ID: 107 UserName: Name: Created new Image:2709 Name:"numpy image" newPlane for z,t: 0 0 uint8 0 127 newPlane for z,t: 0 1 uint8 0 127 newPlane for z,t: 0 2 uint8 0 127 newPlane for z,t: 0 3 uint8 0 127 newPlane for z,t: 0 4 uint8 0 127 newPlane for z,t: 0 5 uint8 0 127 newPlane for z,t: 0 6 uint8 0 127 newPlane for z,t: 0 7 uint8 0 127 newPlane for z,t: 0 8 uint8 0 127 newPlane for z,t: 0 9 uint8 0 127 newPlane for z,t: 1 0 uint8 0 127 newPlane for z,t: 1 1 uint8 0 127 newPlane for z,t: 1 2 uint8 0 127 newPlane for z,t: 1 3 uint8 0 127 newPlane for z,t: 1 4 uint8 0 127 newPlane for z,t: 1 5 uint8 0 127 newPlane for z,t: 1 6 uint8 0 127 newPlane for z,t: 1 7 uint8 0 127 newPlane for z,t: 1 8 uint8 0 127 newPlane for z,t: 1 9 uint8 0 127 newPlane for z,t: 2 0 uint8 0 127 newPlane for z,t: 2 1 uint8 0 127 newPlane for z,t: 2 2 uint8 0 127 newPlane for z,t: 2 3 uint8 0 127 newPlane for z,t: 2 4 uint8 0 127 newPlane for z,t: 2 5 uint8 0 127 newPlane for z,t: 2 6 uint8 0 127 newPlane for z,t: 2 7 uint8 0 127 newPlane for z,t: 2 8 uint8 0 127 newPlane for z,t: 2 9 uint8 0 127 newPlane for z,t: 3 0 uint8 0 127 newPlane for z,t: 3 1 uint8 0 127 newPlane for z,t: 3 2 uint8 0 127 newPlane for z,t: 3 3 uint8 0 127 newPlane for z,t: 3 4 uint8 0 127 newPlane for z,t: 3 5 uint8 0 127 newPlane for z,t: 3 6 uint8 0 127 newPlane for z,t: 3 7 uint8 0 127 newPlane for z,t: 3 8 uint8 0 127 newPlane for z,t: 3 9 uint8 0 127 newPlane for z,t: 4 0 uint8 0 127 newPlane for z,t: 4 1 uint8 0 127 newPlane for z,t: 4 2 uint8 0 127 newPlane for z,t: 4 3 uint8 0 127 newPlane for z,t: 4 4 uint8 0 127 newPlane for z,t: 4 5 uint8 0 127 newPlane for z,t: 4 6 uint8 0 127 newPlane for z,t: 4 7 uint8 0 127 newPlane for z,t: 4 8 uint8 0 127 newPlane for z,t: 4 9 uint8 0 127 Deleting, please wait. Error? False 2703 test&sizeT=10&sizeZ=5&sizeC=3.fake training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2024-03/26/01-11-03.930/ test&sizeT=10&sizeZ=5&sizeC=3.fake 1 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2024-03/26/01-11-03.930/ test&sizeT=10&sizeZ=5&sizeC=3.fake Current group: training_group Permissions: READ-ONLY (rwr---) Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 1 Owner: training_user training_user Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Project 0 Owner: training_user-2 training_user-2 Image: <_ImageWrapper id=2703> Image: <_ImageWrapper id=2703> Group: training_group 3 Image: <_ImageWrapper id=2703> Channel: 0 Channel: 1 Channel: 2 original_metadata global_metadata series_metadata Plane at zct: 0 0 0 [[ 0 0 0 ... 253 254 255] [ 0 0 0 ... 253 254 255] [ 0 0 0 ... 253 254 255] ... [ 0 1 2 ... 253 254 255] [ 0 1 2 ... 253 254 255] [ 0 1 2 ... 253 254 255]] shape: (512, 512) min: 0 max: 255 pixel type: uint8 Z stack of tiles: Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 Hyper stack of planes: plane zct: (2, 0, 0) min: 0 max: 255 plane zct: (2, 0, 1) min: 0 max: 255 plane zct: (2, 0, 2) min: 0 max: 255 plane zct: (2, 0, 3) min: 0 max: 255 plane zct: (2, 0, 4) min: 0 max: 255 plane zct: (2, 0, 5) min: 0 max: 255 plane zct: (2, 0, 6) min: 0 max: 255 plane zct: (2, 0, 7) min: 0 max: 255 plane zct: (2, 0, 8) min: 0 max: 255 plane zct: (2, 0, 9) min: 0 max: 255 plane zct: (2, 1, 0) min: 0 max: 255 plane zct: (2, 1, 1) min: 0 max: 255 plane zct: (2, 1, 2) min: 0 max: 255 plane zct: (2, 1, 3) min: 0 max: 255 plane zct: (2, 1, 4) min: 0 max: 255 plane zct: (2, 1, 5) min: 0 max: 255 plane zct: (2, 1, 6) min: 0 max: 255 plane zct: (2, 1, 7) min: 0 max: 255 plane zct: (2, 1, 8) min: 0 max: 255 plane zct: (2, 1, 9) min: 0 max: 255 plane zct: (2, 2, 0) min: 0 max: 255 plane zct: (2, 2, 1) min: 0 max: 255 plane zct: (2, 2, 2) min: 0 max: 255 plane zct: (2, 2, 3) min: 0 max: 255 plane zct: (2, 2, 4) min: 0 max: 255 plane zct: (2, 2, 5) min: 0 max: 255 plane zct: (2, 2, 6) min: 0 max: 255 plane zct: (2, 2, 7) min: 0 max: 255 plane zct: (2, 2, 8) min: 0 max: 255 plane zct: (2, 2, 9) min: 0 max: 255 plane zct: (3, 0, 0) min: 0 max: 255 plane zct: (3, 0, 1) min: 0 max: 255 plane zct: (3, 0, 2) min: 0 max: 255 plane zct: (3, 0, 3) min: 0 max: 255 plane zct: (3, 0, 4) min: 0 max: 255 plane zct: (3, 0, 5) min: 0 max: 255 plane zct: (3, 0, 6) min: 0 max: 255 plane zct: (3, 0, 7) min: 0 max: 255 plane zct: (3, 0, 8) min: 0 max: 255 plane zct: (3, 0, 9) min: 0 max: 255 plane zct: (3, 1, 0) min: 0 max: 255 plane zct: (3, 1, 1) min: 0 max: 255 plane zct: (3, 1, 2) min: 0 max: 255 plane zct: (3, 1, 3) min: 0 max: 255 plane zct: (3, 1, 4) min: 0 max: 255 plane zct: (3, 1, 5) min: 0 max: 255 plane zct: (3, 1, 6) min: 0 max: 255 plane zct: (3, 1, 7) min: 0 max: 255 plane zct: (3, 1, 8) min: 0 max: 255 plane zct: (3, 1, 9) min: 0 max: 255 plane zct: (3, 2, 0) min: 0 max: 255 plane zct: (3, 2, 1) min: 0 max: 255 plane zct: (3, 2, 2) min: 0 max: 255 plane zct: (3, 2, 3) min: 0 max: 255 plane zct: (3, 2, 4) min: 0 max: 255 plane zct: (3, 2, 5) min: 0 max: 255 plane zct: (3, 2, 6) min: 0 max: 255 plane zct: (3, 2, 7) min: 0 max: 255 plane zct: (3, 2, 8) min: 0 max: 255 plane zct: (3, 2, 9) min: 0 max: 255 plane zct: (4, 0, 0) min: 0 max: 255 plane zct: (4, 0, 1) min: 0 max: 255 plane zct: (4, 0, 2) min: 0 max: 255 plane zct: (4, 0, 3) min: 0 max: 255 plane zct: (4, 0, 4) min: 0 max: 255 plane zct: (4, 0, 5) min: 0 max: 255 plane zct: (4, 0, 6) min: 0 max: 255 plane zct: (4, 0, 7) min: 0 max: 255 plane zct: (4, 0, 8) min: 0 max: 255 plane zct: (4, 0, 9) min: 0 max: 255 plane zct: (4, 1, 0) min: 0 max: 255 plane zct: (4, 1, 1) min: 0 max: 255 plane zct: (4, 1, 2) min: 0 max: 255 plane zct: (4, 1, 3) min: 0 max: 255 plane zct: (4, 1, 4) min: 0 max: 255 plane zct: (4, 1, 5) min: 0 max: 255 plane zct: (4, 1, 6) min: 0 max: 255 plane zct: (4, 1, 7) min: 0 max: 255 plane zct: (4, 1, 8) min: 0 max: 255 plane zct: (4, 1, 9) min: 0 max: 255 plane zct: (4, 2, 0) min: 0 max: 255 plane zct: (4, 2, 1) min: 0 max: 255 plane zct: (4, 2, 2) min: 0 max: 255 plane zct: (4, 2, 3) min: 0 max: 255 plane zct: (4, 2, 4) min: 0 max: 255 plane zct: (4, 2, 5) min: 0 max: 255 plane zct: (4, 2, 6) min: 0 max: 255 plane zct: (4, 2, 7) min: 0 max: 255 plane zct: (4, 2, 8) min: 0 max: 255 plane zct: (4, 2, 9) min: 0 max: 255 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]} List Projects: ================================================== Project:1 Name:"Project 1" (owner=training_user) Dataset:1 Name:"Dataset 1-1" (owner=training_user) Image:1 Name:"test.fake" (owner=training_user) Dataset:2 Name:"Dataset 1-2" (owner=training_user) Image:12 Name:"New Image" (owner=training_user) Image:13 Name:"newImageFrom3" (owner=training_user) Image:2 Name:"test.fake" (owner=training_user) Dataset:7 Name:"New Dataset" (owner=training_user) Dataset:17 Name:"new Name 1" (owner=training_user) Dataset:18 Name:"new Name 2" (owner=training_user) Project:51 Name:"Project 1" (owner=training_user) Dataset:51 Name:"Dataset 1-1" (owner=training_user) Image:51 Name:"test.fake" (owner=training_user) Dataset:52 Name:"Dataset 1-2" (owner=training_user) Image:62 Name:"New Image" (owner=training_user) Image:63 Name:"newImageFrom53" (owner=training_user) Image:52 Name:"test.fake" (owner=training_user) Dataset:57 Name:"New Dataset" (owner=training_user) Dataset:67 Name:"new Name 1" (owner=training_user) Dataset:68 Name:"new Name 2" (owner=training_user) Project:101 Name:"Project 1" (owner=training_user) Dataset:101 Name:"Dataset 1-1" (owner=training_user) Image:101 Name:"test.fake" (owner=training_user) Dataset:102 Name:"Dataset 1-2" (owner=training_user) Image:112 Name:"New Image" (owner=training_user) Image:113 Name:"newImageFrom103" (owner=training_user) Image:102 Name:"test.fake" (owner=training_user) Dataset:107 Name:"New Dataset" (owner=training_user) Dataset:117 Name:"new Name 1" (owner=training_user) Dataset:118 Name:"new Name 2" (owner=training_user) Project:151 Name:"Project 1" (owner=training_user) Dataset:151 Name:"Dataset 1-1" (owner=training_user) Image:151 Name:"test.fake" (owner=training_user) Dataset:152 Name:"Dataset 1-2" (owner=training_user) Image:162 Name:"New Image" (owner=training_user) Image:163 Name:"newImageFrom153" (owner=training_user) Image:152 Name:"test.fake" (owner=training_user) Dataset:157 Name:"New Dataset" (owner=training_user) Dataset:167 Name:"new Name 1" (owner=training_user) Dataset:168 Name:"new Name 2" (owner=training_user) Project:301 Name:"Project 1" (owner=training_user) Dataset:351 Name:"Dataset 1-1" (owner=training_user) Image:2551 Name:"test.fake" (owner=training_user) Dataset:352 Name:"Dataset 1-2" (owner=training_user) Image:2562 Name:"New Image" (owner=training_user) Image:2563 Name:"newImageFrom2553" (owner=training_user) Image:2552 Name:"test.fake" (owner=training_user) Dataset:357 Name:"New Dataset" (owner=training_user) Dataset:367 Name:"new Name 1" (owner=training_user) Dataset:368 Name:"new Name 2" (owner=training_user) List orphaned Datasets: ================================================== Dataset:3 Name:"Orphaned dataset 1" (owner=training_user) Dataset:4 Name:"Orphaned dataset 2" (owner=training_user) Dataset:5 Name:"Dataset 0" (owner=training_user-2) Dataset:8 Name:"MyDataset" (owner=training_user) Dataset:9 Name:"MyDataset" (owner=training_user) Dataset:10 Name:"MyDataset" (owner=training_user) Dataset:11 Name:"New Dataset" (owner=training_user) Dataset:12 Name:"New Dataset2" (owner=training_user) Dataset:13 Name:"FileAnnotationDelete" (owner=training_user) Dataset:14 Name:"MyDataset" (owner=training_user) Dataset:15 Name:"MyDataset" (owner=training_user) Dataset:16 Name:"MyDataset" (owner=training_user) Dataset:53 Name:"Orphaned dataset 1" (owner=training_user) Dataset:54 Name:"Orphaned dataset 2" (owner=training_user) Dataset:55 Name:"Dataset 0" (owner=training_user-2) Dataset:58 Name:"MyDataset" (owner=training_user) Dataset:59 Name:"MyDataset" (owner=training_user) Dataset:60 Name:"MyDataset" (owner=training_user) Dataset:61 Name:"New Dataset" (owner=training_user) Dataset:62 Name:"New Dataset2" (owner=training_user) Dataset:63 Name:"FileAnnotationDelete" (owner=training_user) Dataset:64 Name:"MyDataset" (owner=training_user) Dataset:65 Name:"MyDataset" (owner=training_user) Dataset:66 Name:"MyDataset" (owner=training_user) Dataset:103 Name:"Orphaned dataset 1" (owner=training_user) Dataset:104 Name:"Orphaned dataset 2" (owner=training_user) Dataset:105 Name:"Dataset 0" (owner=training_user-2) Dataset:108 Name:"MyDataset" (owner=training_user) Dataset:109 Name:"MyDataset" (owner=training_user) Dataset:110 Name:"MyDataset" (owner=training_user) Dataset:111 Name:"New Dataset" (owner=training_user) Dataset:112 Name:"New Dataset2" (owner=training_user) Dataset:113 Name:"FileAnnotationDelete" (owner=training_user) Dataset:114 Name:"MyDataset" (owner=training_user) Dataset:115 Name:"MyDataset" (owner=training_user) Dataset:116 Name:"MyDataset" (owner=training_user) Dataset:153 Name:"Orphaned dataset 1" (owner=training_user) Dataset:154 Name:"Orphaned dataset 2" (owner=training_user) Dataset:155 Name:"Dataset 0" (owner=training_user-2) Dataset:158 Name:"MyDataset" (owner=training_user) Dataset:159 Name:"MyDataset" (owner=training_user) Dataset:160 Name:"MyDataset" (owner=training_user) Dataset:161 Name:"New Dataset" (owner=training_user) Dataset:162 Name:"New Dataset2" (owner=training_user) Dataset:163 Name:"FileAnnotationDelete" (owner=training_user) Dataset:164 Name:"MyDataset" (owner=training_user) Dataset:165 Name:"MyDataset" (owner=training_user) Dataset:166 Name:"MyDataset" (owner=training_user) Dataset:353 Name:"Orphaned dataset 1" (owner=training_user) Dataset:354 Name:"Orphaned dataset 2" (owner=training_user) Dataset:355 Name:"Dataset 0" (owner=training_user-2) Dataset:358 Name:"MyDataset" (owner=training_user) Dataset:359 Name:"MyDataset" (owner=training_user) Dataset:360 Name:"MyDataset" (owner=training_user) Dataset:361 Name:"New Dataset" (owner=training_user) Dataset:362 Name:"New Dataset2" (owner=training_user) Dataset:363 Name:"FileAnnotationDelete" (owner=training_user) Dataset:364 Name:"MyDataset" (owner=training_user) Dataset:365 Name:"MyDataset" (owner=training_user) Dataset:366 Name:"MyDataset" (owner=training_user) Dataset:403 Name:"Orphaned dataset 1" (owner=training_user) Dataset:404 Name:"Orphaned dataset 2" (owner=training_user) Dataset:405 Name:"Dataset 0" (owner=training_user-2) Dataset:408 Name:"MyDataset" (owner=training_user) Dataset:409 Name:"MyDataset" (owner=training_user) Dataset:410 Name:"MyDataset" (owner=training_user) Dataset:411 Name:"New Dataset" (owner=training_user) Dataset:412 Name:"New Dataset2" (owner=training_user) :150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. Dataset:413 Name:"FileAnnotationDelete" (owner=training_user) Dataset:414 Name:"MyDataset" (owner=training_user) Dataset:415 Name:"MyDataset" (owner=training_user) Dataset:416 Name:"MyDataset" (owner=training_user) Dataset:453 Name:"Orphaned dataset 1" (owner=training_user) Dataset:454 Name:"Orphaned dataset 2" (owner=training_user) Dataset:455 Name:"Dataset 0" (owner=training_user-2) Dataset:458 Name:"MyDataset" (owner=training_user) Dataset:459 Name:"MyDataset" (owner=training_user) Dataset:460 Name:"MyDataset" (owner=training_user) Dataset:461 Name:"New Dataset" (owner=training_user) Dataset:462 Name:"New Dataset2" (owner=training_user) Dataset:463 Name:"FileAnnotationDelete" (owner=training_user) Dataset:464 Name:"MyDataset" (owner=training_user) Dataset:465 Name:"MyDataset" (owner=training_user) Dataset:466 Name:"MyDataset" (owner=training_user) Dataset:503 Name:"Orphaned dataset 1" (owner=training_user) Dataset:504 Name:"Orphaned dataset 2" (owner=training_user) Dataset:505 Name:"Dataset 0" (owner=training_user-2) Images in Dataset: 502 ================================================== Image:2702 Name:"test.fake" (owner=training_user) Image:2703 ================================================== test&sizeT=10&sizeZ=5&sizeC=3.fake X: 512 Y: 512 Z: 5 C: 3 T: 10 Channel: 0 Color: (255, 0, 0) Lookup table: None Is reverse intensity? False Channel: 1 Color: (0, 255, 0) Lookup table: None Is reverse intensity? False Channel: 2 Color: (0, 0, 255) Lookup table: None Is reverse intensity? False Pixel Size X: None List Screens: ================================================== Screen:351 Name:"Screen" (owner=training_user) Plate:451 Name:"Plate" (owner=training_user) Plate:452 Name:"Plate Name 0" (owner=training_user) Screen:301 Name:"Screen" (owner=training_user) Plate:401 Name:"Plate" (owner=training_user) Plate:402 Name:"Plate Name 0" (owner=training_user) Screen:251 Name:"Screen" (owner=training_user) Plate:351 Name:"Plate" (owner=training_user) Plate:352 Name:"Plate Name 0" (owner=training_user) Screen:201 Name:"Screen" (owner=training_user) Plate:301 Name:"Plate" (owner=training_user) Plate:302 Name:"Plate Name 0" (owner=training_user) Screen:151 Name:"Screen" (owner=training_user) Plate:151 Name:"Plate" (owner=training_user) Plate:152 Name:"Plate Name 0" (owner=training_user) Screen:101 Name:"Screen" (owner=training_user) Plate:101 Name:"Plate" (owner=training_user) Plate:102 Name:"Plate Name 0" (owner=training_user) Screen:51 Name:"Screen" (owner=training_user) Plate:51 Name:"Plate" (owner=training_user) Plate:52 Name:"Plate Name 0" (owner=training_user) Screen:1 Name:"Screen" (owner=training_user) Plate:1 Name:"Plate" (owner=training_user) Plate:2 Name:"Plate Name 0" (owner=training_user) Screen:352 Name:"Screen" (owner=training_user-2) Screen:302 Name:"Screen" (owner=training_user-2) Screen:252 Name:"Screen" (owner=training_user-2) Screen:202 Name:"Screen" (owner=training_user-2) Screen:152 Name:"Screen" (owner=training_user-2) Screen:102 Name:"Screen" (owner=training_user-2) Screen:52 Name:"Screen" (owner=training_user-2) Screen:2 Name:"Screen" (owner=training_user-2) Plate:452 ================================================== Number of fields: (0, 0) Grid size: {'rows': 1, 'columns': 3} Wells in Plate: Plate Name 0 Well: 0 1 Fields: 1 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 2705 Well: 0 0 Fields: 1 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 2704 Well: 0 2 Fields: 1 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 2706 1551 added by training_user Image ID: 2703 Annotation ID: 1551 2703 Channel rendering settings: Name: 0 Color: FF0000 Active: True Levels: 0.0 - 255.0 Name: 1 Color: 00FF00 Active: True Levels: 0.0 - 255.0 Name: 2 Color: 0000FF Active: True Levels: 0.0 - 255.0 isGreyscaleRenderingModel: False Default Z/T positions: Z = 2, T = 0 Rendering Defs on Image: ID: 2653 (owner: training_user training_user) Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50 ROI: ID: 352 Shape: id 371 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0 Shape: id 372 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0 ROI: ID: 353 Shape: id 373 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0 ROI: ID: 354 Shape: id 374 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0 ROI: ID: 355 Shape: id 375 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0 ROI: ID: 356 Not supported by this code Shape: id 376 theT 0 theZ 2 textValue test-Polygon Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0 Removing Shape from ROI... Deleting ROI: 357 Table Columns: Uid MyStringColumnInit Row count: 10 Get All Data for rows: [3, 5, 7] Data for Column: Uid 1 2 3 4 5 6 7 8 9 10 Data for Column: MyStringColumnInit one two three four five six seven eight nine ten Get All Data for rows with slice: [3, 5, 7] Data for Column: Uid 4 6 8 Data for Column: MyStringColumnInit four six eight Get Data for cols: [1] and between rows: 3 - 7 Data for Column: MyStringColumnInit four five six seven Get Data for cols: [1] and between rows: 3 - 7 with slice Data for Column: MyStringColumnInit four five six seven Query Results for Column: Uid 3 4 5 6 7 8 Query Results for Column: MyStringColumnInit three four five six seven eight Opened table with row-count: 10 New dataset, Id: 507 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0} 1555 added by training_user Tag value: New Tag 1556 added by training_user Creating an OriginalFile and FileAnnotation Attaching FileAnnotation to Dataset: File ID: 1557 , README.txt Size: 15 Annotations on Dataset: New Dataset File ID: 8648 README.txt Size: 15 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ... File downloaded! 1457 README.txt 107 README.txt 1407 README.txt 1557 README.txt 7 README.txt 1507 README.txt 57 README.txt 157 README.txt Found Annotation with namespace: imperial.training.demo Plane: 0 0 0 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)] [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)] List Datasets: ID: 8 Name: MyDataset ID: 9 Name: MyDataset ID: 10 Name: MyDataset ID: 14 Name: MyDataset ID: 15 Name: MyDataset ID: 16 Name: MyDataset ID: 58 Name: MyDataset ID: 59 Name: MyDataset ID: 60 Name: MyDataset ID: 64 Name: MyDataset ID: 65 Name: MyDataset ID: 66 Name: MyDataset ID: 108 Name: MyDataset ID: 109 Name: MyDataset ID: 110 Name: MyDataset ID: 114 Name: MyDataset ID: 115 Name: MyDataset ID: 116 Name: MyDataset ID: 158 Name: MyDataset ID: 159 Name: MyDataset ID: 160 Name: MyDataset ID: 164 Name: MyDataset ID: 165 Name: MyDataset ID: 166 Name: MyDataset ID: 358 Name: MyDataset ID: 359 Name: MyDataset ID: 360 Name: MyDataset ID: 364 Name: MyDataset ID: 365 Name: MyDataset ID: 366 Name: MyDataset ID: 408 Name: MyDataset ID: 409 Name: MyDataset ID: 410 Name: MyDataset ID: 414 Name: MyDataset ID: 415 Name: MyDataset ID: 416 Name: MyDataset ID: 458 Name: MyDataset ID: 459 Name: MyDataset ID: 460 Name: MyDataset ID: 464 Name: MyDataset ID: 465 Name: MyDataset ID: 466 Name: MyDataset ID: 508 Name: MyDataset ID: 509 Name: MyDataset ID: 510 Name: MyDataset List Tags: ID: 8 Text: MyTag Desc: MyTag 0 ID: 9 Text: MyTag Desc: MyTag 1 ID: 10 Text: MyTag Desc: MyTag 2 ID: 16 Text: MyTag Desc: MyTag 0 ID: 17 Text: MyTag Desc: MyTag 1 ID: 18 Text: MyTag Desc: MyTag 2 ID: 58 Text: MyTag Desc: MyTag 0 ID: 59 Text: MyTag Desc: MyTag 1 ID: 60 Text: MyTag Desc: MyTag 2 ID: 66 Text: MyTag Desc: MyTag 0 ID: 67 Text: MyTag Desc: MyTag 1 ID: 68 Text: MyTag Desc: MyTag 2 ID: 108 Text: MyTag Desc: MyTag 0 ID: 109 Text: MyTag Desc: MyTag 1 ID: 110 Text: MyTag Desc: MyTag 2 ID: 116 Text: MyTag Desc: MyTag 0 ID: 117 Text: MyTag Desc: MyTag 1 ID: 118 Text: MyTag Desc: MyTag 2 ID: 158 Text: MyTag Desc: MyTag 0 ID: 159 Text: MyTag Desc: MyTag 1 ID: 160 Text: MyTag Desc: MyTag 2 ID: 166 Text: MyTag Desc: MyTag 0 ID: 167 Text: MyTag Desc: MyTag 1 ID: 168 Text: MyTag Desc: MyTag 2 ID: 1408 Text: MyTag Desc: MyTag 0 ID: 1409 Text: MyTag Desc: MyTag 1 ID: 1410 Text: MyTag Desc: MyTag 2 ID: 1416 Text: MyTag Desc: MyTag 0 ID: 1417 Text: MyTag Desc: MyTag 1 ID: 1418 Text: MyTag Desc: MyTag 2 ID: 1458 Text: MyTag Desc: MyTag 0 ID: 1459 Text: MyTag Desc: MyTag 1 ID: 1460 Text: MyTag Desc: MyTag 2 ID: 1466 Text: MyTag Desc: MyTag 0 ID: 1467 Text: MyTag Desc: MyTag 1 ID: 1468 Text: MyTag Desc: MyTag 2 ID: 1508 Text: MyTag Desc: MyTag 0 ID: 1509 Text: MyTag Desc: MyTag 1 ID: 1510 Text: MyTag Desc: MyTag 2 ID: 1516 Text: MyTag Desc: MyTag 0 ID: 1517 Text: MyTag Desc: MyTag 1 ID: 1518 Text: MyTag Desc: MyTag 2 ID: 1558 Text: MyTag Desc: MyTag 0 ID: 1559 Text: MyTag Desc: MyTag 1 ID: 1560 Text: MyTag Desc: MyTag 2 New dataset, Id: 511 New dataset 2, Id: 512 test&sizeT=10&sizeZ=5&sizeC=3.fake Tile at zct tile: 2.5 0 0 (5, 5, 100, 100) [[ 0 0 0 ... 102 103 104] [ 0 0 0 ... 102 103 104] [ 0 0 0 ... 102 103 104] ... [ 5 6 7 ... 102 103 104] [ 5 6 7 ... 102 103 104] [ 5 6 7 ... 102 103 104]] shape: (100, 100) min: 0 max: 104 pixel type: uint8 Average : 53.9125 Getting data for T, tile: 0 (256.0, 0, 10, 512) Getting data for T, tile: 1 (256.0, 0, 10, 512) Getting data for T, tile: 2 (256.0, 0, 10, 512) Getting data for T, tile: 3 (256.0, 0, 10, 512) Getting data for T, tile: 4 (256.0, 0, 10, 512) Getting data for T, tile: 5 (256.0, 0, 10, 512) Getting data for T, tile: 6 (256.0, 0, 10, 512) Getting data for T, tile: 7 (256.0, 0, 10, 512) Getting data for T, tile: 8 (256.0, 0, 10, 512) Getting data for T, tile: 9 (256.0, 0, 10, 512) kymograph_data (512, 100) Attaching kymograph.png to image test&sizeT=10&sizeZ=5&sizeC=3.fake Tile at zct tile: 2.5 0 0 (5, 5, 100, 100) [[ 0 0 0 ... 102 103 104] [ 0 0 0 ... 102 103 104] [ 0 0 0 ... 102 103 104] ... [ 5 6 7 ... 102 103 104] [ 5 6 7 ... 102 103 104] [ 5 6 7 ... 102 103 104]] shape: (100, 100) min: 0 max: 104 pixel type: uint8 Average : 53.9125 Getting data for T, tile: 0 (256.0, 0, 10, 512) Getting data for T, tile: 1 (256.0, 0, 10, 512) Getting data for T, tile: 2 (256.0, 0, 10, 512) Getting data for T, tile: 3 (256.0, 0, 10, 512) Getting data for T, tile: 4 (256.0, 0, 10, 512) Getting data for T, tile: 5 (256.0, 0, 10, 512) Getting data for T, tile: 6 (256.0, 0, 10, 512) Getting data for T, tile: 7 (256.0, 0, 10, 512) Getting data for T, tile: 8 (256.0, 0, 10, 512) Getting data for T, tile: 9 (256.0, 0, 10, 512) kymograph_data (512, 100) Attaching kymograph.png to image No file downloaded. Project not rated. New image, Id: 2712 Starting at: http://nginx/web/api/ CSRF token rDhKcKoghf7QXhRCADkaDegcUHSZnUhseVP3u4h3sP1KvFUS8s5C5UvWpeLizLfG Servers: -id: 1 name: omero host: omero port: 4064 -id: 2 name: testintegration host: testintegration port: 14064 eventContext {'sessionId': 1999, 'sessionUuid': '3d98c9ea-b482-4919-b143-f1eecad77408', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []} Projects: 2 Project 0 3 Project 0 Created Project: 456 API TEST foo {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 456, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/456/datasets/'}} !! 03/26/24 01:12:36.431 error: communicator not destroyed during global destruction.+ deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + '[' -n /bin/bash -o -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + '[' '!' '' = nondestructive ']' + unset -f deactivate + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup omero.cmd.Delete2Response@6731787b omero.cmd.Delete2Response@297ea53a one [class java.lang.String] 1.0 [class java.lang.Double] two [class java.lang.String] 2.0 [class java.lang.Double] three [class java.lang.String] 3.0 [class java.lang.Double] -1.0 0 1 2 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 4 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 5 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 6 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 7 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 8 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 9 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 10 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 11 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 12 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 13 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 14 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 15 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 16 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 17 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 18 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 19 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 20 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 21 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 22 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 23 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 24 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 25 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 26 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 27 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 28 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 29 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 30 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 31 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 32 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 33 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 34 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 35 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 36 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 37 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 38 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 39 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 40 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 41 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 42 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 43 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 44 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 45 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 46 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 47 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 48 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 49 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014 50 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 51 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 52 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 53 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 54 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 55 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|]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 236 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 237 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 238 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 239 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 240 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 241 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 242 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 243 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 244 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 245 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 246 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 247 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 248 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 249 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 250 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 251 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 252 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 253 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 254 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 255 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024 Project:301 Project 1 dataset:367 new Name 1 dataset:352 Dataset 1-2 dataset:368 new Name 2 dataset:357 New Dataset dataset:351 Dataset 1-1 Project:51 Project 1 dataset:57 New Dataset dataset:67 new Name 1 dataset:68 new Name 2 dataset:52 Dataset 1-2 dataset:51 Dataset 1-1 Project:402 Project 0 Project:451 Project 1 dataset:501 Dataset 1-1 dataset:507 New Dataset dataset:502 Dataset 1-2 Project:151 Project 1 dataset:168 new Name 2 dataset:167 new Name 1 dataset:157 New Dataset dataset:152 Dataset 1-2 dataset:151 Dataset 1-1 Project:101 Project 1 dataset:101 Dataset 1-1 dataset:118 new Name 2 dataset:107 New Dataset dataset:102 Dataset 1-2 dataset:117 new Name 1 Project:102 Project 0 Project:351 Project 1 dataset:402 Dataset 1-2 dataset:418 new Name 2 dataset:401 Dataset 1-1 dataset:407 New Dataset dataset:417 new Name 1 Project:302 Project 0 Project:2 Project 0 Project:452 Project 0 Project:1 Project 1 dataset:1 Dataset 1-1 dataset:7 New Dataset dataset:17 new Name 1 dataset:2 Dataset 1-2 dataset:18 new Name 2 Project:352 Project 0 Project:52 Project 0 Project:152 Project 0 Project:401 Project 1 dataset:467 new Name 1 dataset:451 Dataset 1-1 dataset:468 new Name 2 dataset:452 Dataset 1-2 dataset:457 New Dataset image:2713 newImageFrom2703 image:2712 New Image image:2702 test.fake 5 10 3 512 512 screen:2 Screen screen:201 Screen plate:302 Plate Name 0 plate:301 Plate screen:101 Screen plate:102 Plate Name 0 plate:101 Plate screen:202 Screen screen:302 Screen screen:52 Screen screen:352 Screen screen:102 Screen screen:301 Screen plate:401 Plate plate:402 Plate Name 0 screen:151 Screen plate:152 Plate Name 0 plate:151 Plate screen:152 Screen screen:351 Screen plate:452 Plate Name 0 plate:451 Plate screen:252 Screen screen:1 Screen plate:2 Plate Name 0 plate:1 Plate screen:251 Screen plate:352 Plate Name 0 plate:351 Plate screen:51 Screen plate:52 Plate Name 0 plate:51 Plate well:551 well:552 well:553 plate:151 plate:403 plate:451 plate:3 plate:301 plate:53 plate:302 plate:2 plate:102 plate:453 plate:101 plate:1 plate:303 plate:352 plate:52 plate:103 plate:353 plate:452 plate:51 plate:351 plate:152 plate:402 plate:153 plate:401 List Datasets: ID: 8 Name: MyDataset ID: 9 Name: MyDataset ID: 10 Name: MyDataset ID: 14 Name: MyDataset ID: 15 Name: MyDataset ID: 16 Name: MyDataset ID: 58 Name: MyDataset ID: 59 Name: MyDataset ID: 60 Name: MyDataset ID: 64 Name: MyDataset List Tags: ID: 16 NS: omero.training.demo ID: 17 NS: omero.training.demo ID: 18 NS: omero.training.demo ID: 66 NS: omero.training.demo ID: 67 NS: omero.training.demo ID: 68 NS: omero.training.demo ID: 116 NS: omero.training.demo ID: 117 NS: omero.training.demo ID: 118 NS: omero.training.demo ID: 166 NS: omero.training.demo Dataset:14 MyDataset Dataset:63 FileAnnotationDelete Dataset:10 MyDataset Dataset:508 MyDataset Project:1 Project 1 Dataset:510 MyDataset Dataset:404 Orphaned dataset 2 Dataset:460 MyDataset Dataset:163 FileAnnotationDelete Dataset:354 Orphaned dataset 2 Dataset:4 Orphaned dataset 2 Dataset:411 New Dataset Dataset:113 FileAnnotationDelete Dataset:166 MyDataset Dataset:65 MyDataset Dataset:154 Orphaned dataset 2 Dataset:363 FileAnnotationDelete Dataset:12 New Dataset2 Dataset:415 MyDataset Dataset:116 MyDataset Dataset:114 MyDataset Dataset:360 MyDataset Dataset:511 New Dataset Dataset:109 MyDataset Dataset:466 MyDataset Project:401 Project 1 Dataset:403 Orphaned dataset 1 Dataset:515 MyDataset Dataset:364 MyDataset Dataset:414 MyDataset Dataset:509 MyDataset Dataset:358 MyDataset Dataset:16 MyDataset Dataset:459 MyDataset Dataset:164 MyDataset Dataset:464 MyDataset Project:301 Project 1 Dataset:409 MyDataset Dataset:115 MyDataset Dataset:161 New Dataset Dataset:160 MyDataset Project:351 Project 1 Dataset:461 New Dataset Dataset:54 Orphaned dataset 2 Dataset:159 MyDataset Dataset:8 MyDataset Dataset:408 MyDataset Project:151 Project 1 Dataset:463 FileAnnotationDelete Dataset:66 MyDataset Dataset:465 MyDataset Dataset:111 New Dataset Dataset:59 MyDataset Dataset:104 Orphaned dataset 2 Dataset:413 FileAnnotationDelete Dataset:454 Orphaned dataset 2 Dataset:61 New Dataset Dataset:503 Orphaned dataset 1 Dataset:359 MyDataset Dataset:412 New Dataset2 Dataset:516 MyDataset Dataset:410 MyDataset Dataset:458 MyDataset Dataset:361 New Dataset Dataset:416 MyDataset Project:451 Project 1 Dataset:165 MyDataset Dataset:53 Orphaned dataset 1 Dataset:513 FileAnnotationDelete Dataset:9 MyDataset Dataset:112 New Dataset2 Dataset:158 MyDataset Dataset:3 Orphaned dataset 1 Project:101 Project 1 Dataset:362 New Dataset2 Dataset:62 New Dataset2 Dataset:462 New Dataset2 Dataset:366 MyDataset Dataset:108 MyDataset Dataset:13 FileAnnotationDelete Dataset:365 MyDataset Project:51 Project 1 Dataset:514 MyDataset Dataset:504 Orphaned dataset 2 Dataset:60 MyDataset Dataset:162 New Dataset2 Dataset:64 MyDataset Dataset:58 MyDataset Dataset:153 Orphaned dataset 1 Dataset:103 Orphaned dataset 1 Dataset:11 New Dataset Dataset:110 MyDataset Dataset:453 Orphaned dataset 1 Dataset:512 New Dataset2 Dataset:15 MyDataset Dataset:353 Orphaned dataset 1 Size:0 512 512 9 9 1 Logged in as ladmin_user Added 'training_user's tag' to dataset MyDataset on behalf of training_user Added 'ladmin_user's tag' to dataset MyDataset as admin. Finished: SUCCESS