10:53:23 Started by user devspace 10:53:23 Running as SYSTEM 10:53:23 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training 10:53:23 [OMERO-training] $ /bin/bash -xe /tmp/jenkins10124685031386181671.sh 10:53:23 + rm -rf /home/omero/workspace/OMERO-training/.venv3 10:53:23 + python3.11 -m venv /home/omero/workspace/OMERO-training/.venv3 10:53:27 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate 10:53:27 ++ deactivate nondestructive 10:53:27 ++ '[' -n '' ']' 10:53:27 ++ '[' -n '' ']' 10:53:27 ++ hash -r 10:53:27 ++ '[' -n '' ']' 10:53:27 ++ unset VIRTUAL_ENV 10:53:27 ++ unset VIRTUAL_ENV_PROMPT 10:53:27 ++ '[' '!' nondestructive = nondestructive ']' 10:53:27 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3 10:53:27 ++ export VIRTUAL_ENV 10:53:27 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:53:27 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:53:27 ++ export PATH 10:53:27 ++ '[' -n '' ']' 10:53:27 ++ '[' -z '' ']' 10:53:27 ++ _OLD_VIRTUAL_PS1= 10:53:27 ++ PS1='(.venv3) ' 10:53:27 ++ export PS1 10:53:27 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 10:53:27 ++ export VIRTUAL_ENV_PROMPT 10:53:27 ++ hash -r 10:53:27 + pip install -U pip setuptools 10:53:27 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 10:53:27 Collecting pip 10:53:27 Using cached pip-25.3-py3-none-any.whl (1.8 MB) 10:53:27 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1) 10:53:27 Collecting setuptools 10:53:27 Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB) 10:53:28 Installing collected packages: setuptools, pip 10:53:28 Attempting uninstall: setuptools 10:53:28 Found existing installation: setuptools 65.5.1 10:53:28 Uninstalling setuptools-65.5.1: 10:53:28 Successfully uninstalled setuptools-65.5.1 10:53:28 Attempting uninstall: pip 10:53:28 Found existing installation: pip 22.3.1 10:53:29 Uninstalling pip-22.3.1: 10:53:29 Successfully uninstalled pip-22.3.1 10:53:29 Successfully installed pip-25.3 setuptools-80.9.0 10:53:30 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 10:53:30 Collecting zeroc-ice==3.6.5 10:53:30 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 10:53:34 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.0 MB/s 0:00:03 10:53:34 Installing collected packages: zeroc-ice 10:53:35 Successfully installed zeroc-ice-3.6.5 10:53:35 + pip install markdown 10:53:35 Collecting markdown 10:53:35 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB) 10:53:35 Using cached markdown-3.10-py3-none-any.whl (107 kB) 10:53:35 Installing collected packages: markdown 10:53:35 Successfully installed markdown-3.10 10:53:35 + pip install mox3 pytest 'pytest-xdist<2' 10:53:36 Collecting mox3 10:53:36 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB) 10:53:36 Collecting pytest 10:53:36 Using cached pytest-9.0.2-py3-none-any.whl.metadata (7.6 kB) 10:53:36 Collecting pytest-xdist<2 10:53:36 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB) 10:53:36 Collecting execnet>=1.1 (from pytest-xdist<2) 10:53:36 Using cached execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB) 10:53:36 Collecting pytest-forked (from pytest-xdist<2) 10:53:36 Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB) 10:53:36 Collecting six (from pytest-xdist<2) 10:53:36 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 10:53:36 Collecting pbr!=2.1.0,>=2.0.0 (from mox3) 10:53:36 Using cached pbr-7.0.3-py2.py3-none-any.whl.metadata (3.8 kB) 10:53:36 Collecting fixtures>=3.0.0 (from mox3) 10:53:36 Using cached fixtures-4.2.8-py3-none-any.whl.metadata (22 kB) 10:53:36 Collecting iniconfig>=1.0.1 (from pytest) 10:53:36 Using cached iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB) 10:53:36 Collecting packaging>=22 (from pytest) 10:53:36 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB) 10:53:36 Collecting pluggy<2,>=1.5 (from pytest) 10:53:36 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB) 10:53:36 Collecting pygments>=2.7.2 (from pytest) 10:53:36 Using cached pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB) 10:53:36 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (80.9.0) 10:53:36 Collecting py (from pytest-forked->pytest-xdist<2) 10:53:36 Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB) 10:53:36 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB) 10:53:36 Using cached mox3-1.1.0-py3-none-any.whl (43 kB) 10:53:36 Using cached pytest-9.0.2-py3-none-any.whl (374 kB) 10:53:36 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB) 10:53:36 Using cached execnet-2.1.2-py3-none-any.whl (40 kB) 10:53:36 Using cached fixtures-4.2.8-py3-none-any.whl (40 kB) 10:53:36 Using cached iniconfig-2.3.0-py3-none-any.whl (7.5 kB) 10:53:36 Using cached packaging-25.0-py3-none-any.whl (66 kB) 10:53:36 Using cached pbr-7.0.3-py2.py3-none-any.whl (131 kB) 10:53:36 Using cached pygments-2.19.2-py3-none-any.whl (1.2 MB) 10:53:36 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB) 10:53:36 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB) 10:53:36 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 10:53:36 Installing collected packages: six, pygments, py, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-forked, pytest-xdist 10:53:38 10:53:38 Successfully installed execnet-2.1.2 fixtures-4.2.8 iniconfig-2.3.0 mox3-1.1.0 packaging-25.0 pbr-7.0.3 pluggy-1.6.0 py-1.11.0 pygments-2.19.2 pytest-9.0.2 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.17.0 10:53:38 + pip install tables 10:53:38 Collecting tables 10:53:38 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) 10:53:38 Collecting numpy>=1.20.0 (from tables) 10:53:38 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 10:53:38 Collecting numexpr>=2.6.2 (from tables) 10:53:38 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 10:53:38 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (25.0) 10:53:38 Collecting py-cpuinfo (from tables) 10:53:38 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 10:53:38 Collecting blosc2>=2.3.0 (from tables) 10:53:38 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB) 10:53:39 Collecting typing-extensions>=4.4.0 (from tables) 10:53:39 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) 10:53:39 Collecting ndindex (from blosc2>=2.3.0->tables) 10:53:39 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 10:53:39 Collecting msgpack (from blosc2>=2.3.0->tables) 10:53:39 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 10:53:39 Collecting platformdirs (from blosc2>=2.3.0->tables) 10:53:39 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB) 10:53:39 Collecting requests (from blosc2>=2.3.0->tables) 10:53:39 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) 10:53:39 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables) 10:53:39 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) 10:53:39 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 10:53:39 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) 10:53:39 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) 10:53:39 Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB) 10:53:39 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) 10:53:39 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB) 10:53:39 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 10:53:39 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB) 10:53:39 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB) 10:53:39 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB) 10:53:39 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) 10:53:39 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB) 10:53:39 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 10:53:39 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB) 10:53:39 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 10:53:39 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 10:53:39 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 10:53:39 Using cached idna-3.11-py3-none-any.whl (71 kB) 10:53:39 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB) 10:53:39 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) 10:53:39 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, numpy, ndindex, msgpack, idna, charset_normalizer, certifi, requests, numexpr, blosc2, tables 10:53:42 10:53:42 Successfully installed blosc2-3.12.2 certifi-2026.1.4 charset_normalizer-3.4.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2 10:53:42 + pip install jinja2 10:53:43 Collecting jinja2 10:53:43 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 10:53:43 Collecting MarkupSafe>=2.0 (from jinja2) 10:53:43 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 10:53:43 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 10:53:43 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 10:53:43 Installing collected packages: MarkupSafe, jinja2 10:53:43 10:53:43 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 10:53:43 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero_web-5.30.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties 10:53:43 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 8 10:53:45 Copied 2 artifacts from "OMERO-build" build number 8 10:53:45 Copied 2 artifacts from "OMERO-build-build" build number 11 10:53:45 [OMERO-training] $ /bin/bash -xe /tmp/jenkins11096658806957913681.sh 10:53:45 + source /home/settings.env 10:53:45 ++ OMERO_DB_HOST=pg 10:53:45 ++ OMERO_DB_USER=postgres 10:53:45 ++ OMERO_DB_PASS= 10:53:45 ++ OMERO_ROOT_PASS=omero 10:53:45 ++ OMERO_DATA_DIR=/OMERO 10:53:45 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:53:45 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip 10:53:45 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip 10:53:45 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties 10:53:45 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties 10:53:45 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy 10:53:45 ++ ls openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:45 + ZIP=openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:45 + DIST=openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8 10:53:45 + unzip -n openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:45 Archive: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:45 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/ 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.classpath-template 10:53:45 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/ 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/Pull_Request_Template.md 10:53:45 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/ 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/docker_build.yml 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/release.yml 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/source_build.yml 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/update.yaml 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.mailmap 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.project 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/CMakeLists.txt 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/CONTRIBUTING.md 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/Dockerfile 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/LICENSE.txt 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/README.md 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/SUPPORT.md 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/build.bat 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/build.py 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/build.xml 10:53:45 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/ 10:53:45 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/ 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/.classpath 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/.project 10:53:45 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/ 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/excludebugs.xml 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/global.xml 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/hibernate.xml 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/lifecycle.xml 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/version.xml 10:53:45 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/scripts/ 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/scripts/parse_version 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/scripts/source-archive.py 10:53:45 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ 10:53:45 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/build.xml 10:53:45 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/ 10:53:45 inflating: 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creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/janelia/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/janelia/pup_br.lut 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/janelia/pup_nr.lut 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/matplotlib/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/matplotlib/inferno.lut 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/matplotlib/magma.lut 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/matplotlib/plasma.lut 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/matplotlib/viridis.lut 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/ncsa_paledit/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/ncsa_paledit/16_colors.lut 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/luts/ncsa_paledit/5_ramps.lut 10:53:46 inflating: 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10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/OMERO4__0.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/OMERO3A__11.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/ 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-footer.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-header.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/schema.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/views.sql 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/test.xml 10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/update_dependencies.sh 10:53:46 extracting: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/gitversion.xml 10:53:46 extracting: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tools/OmeroCpp/cmake/GitVersion.cmake 10:53:46 + rm -f openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:46 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8 /home/omero/workspace/OMERO-training/openmicroscopy 10:53:46 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server 10:53:46 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server 10:53:46 ++ ls OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:46 + ZIP=OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:46 + DIST=OMERO.server-5.6.3-578-e0eabcc200-ice36-b8 10:53:46 + unzip -n OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:46 Archive: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/blitz/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/grid/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/profiles/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/error/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/janelia/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/matplotlib/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/ncsa_paledit/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/seaborn/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/wcif/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/analysis_scripts/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/annotation_scripts/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/export_scripts/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/figure_scripts/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/import_scripts/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/util_scripts/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/server/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/share/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/share/licenses/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/misc/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__1/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__10/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__11/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__2/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__3/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__5/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__6/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__7/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__8/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__9/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__4/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__5/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__6/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__7/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/var/ 10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/var/tmp/ 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/LICENSE.txt 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/backup.cfg 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/blitz/mail-senders.example 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/blitz/mail-server.example 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/build.properties 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/env.bat 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/env.sh 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/hibernate.properties 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/ice.config 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback-cli.xml 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback-indexing-cli.xml 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback-indexing.xml 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback.xml 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/mime.types 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/node1.cfg 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/node2.cfg 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/omero.properties 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/profiles/psql 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/rollover.cfg 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/Windows.cfg 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/error/maintainance.html 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/README 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/default.xml 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/templates.xml 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/windefault.xml 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/ice.config 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/internal.cfg 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/master.cfg 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/robot.template 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/testdropbox.config 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/history.rst 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/OMEZarrReader.jar 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/accessors-smart.jar 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/activation.jar 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/aggdesigner-algorithm.jar 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/aircompressor.jar 10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/antlr.jar 10:53:46 inflating: 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OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/share/licenses/zlib-libpng.txt 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/share/licenses/zpl-v2.1.txt 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/README.txt 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/misc/Makefile 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/misc/current.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/misc/enums.py 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__1/OMERO3__7.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__10/OMERO3A__9.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__11/OMERO3A__10.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__11/OMERO3A__5.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__2/OMERO3A__1.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__3/OMERO3A__2.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__3/OMERO3__5.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/OMERO3A__3.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/OMERO3__5.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__5/OMERO3A__4.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__6/OMERO3A__5.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__7/OMERO3A__6.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__8/OMERO3A__6.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__9/OMERO3A__8.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__4/OMERO3__1.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__5/OMERO3__4.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__6/OMERO3__5.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__7/OMERO3__6.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/OMERO4__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/OMERO3A__11.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-footer.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-header.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/schema.sql 10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/views.sql 10:53:48 + rm -f OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip 10:53:48 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-578-e0eabcc200-ice36-b8 /home/omero/workspace/OMERO-training/OMERO.server 10:53:48 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate 10:53:48 ++ deactivate nondestructive 10:53:48 ++ '[' -n '' ']' 10:53:48 ++ '[' -n '' ']' 10:53:48 ++ hash -r 10:53:48 ++ '[' -n '' ']' 10:53:48 ++ unset VIRTUAL_ENV 10:53:48 ++ unset VIRTUAL_ENV_PROMPT 10:53:48 ++ '[' '!' nondestructive = nondestructive ']' 10:53:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3 10:53:48 ++ export VIRTUAL_ENV 10:53:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:53:48 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:53:48 ++ export PATH 10:53:48 ++ '[' -n '' ']' 10:53:48 ++ '[' -z '' ']' 10:53:48 ++ _OLD_VIRTUAL_PS1= 10:53:48 ++ PS1='(.venv3) ' 10:53:48 ++ export PS1 10:53:48 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 10:53:48 ++ export VIRTUAL_ENV_PROMPT 10:53:48 ++ hash -r 10:53:48 + for x in *.gz 10:53:48 + pip install omero_dropbox-5.7.1.dev0.tar.gz 10:53:48 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 10:53:48 Installing build dependencies: started 10:53:49 Installing build dependencies: finished with status 'done' 10:53:49 Getting requirements to build wheel: started 10:53:49 Getting requirements to build wheel: finished with status 'done' 10:53:49 Preparing metadata (pyproject.toml): started 10:53:49 Preparing metadata (pyproject.toml): finished with status 'done' 10:53:50 Collecting omero-py (from omero-dropbox==5.7.1.dev0) 10:53:50 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB) 10:53:50 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0) 10:53:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 10:53:50 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0) 10:53:50 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 10:53:50 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0) 10:53:50 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0) 10:53:50 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB) 10:53:50 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0) 10:53:50 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 10:53:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 10:53:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5) 10:53:50 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0) 10:53:50 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 10:53:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4) 10:53:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11) 10:53:50 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2) 10:53:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4) 10:53:50 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) 10:53:50 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 10:53:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 10:53:50 Using cached future-1.0.0-py3-none-any.whl (491 kB) 10:53:50 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 10:53:50 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 10:53:50 Building wheels for collected packages: omero-dropbox 10:53:50 Building wheel for omero-dropbox (pyproject.toml): started 10:53:50 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 10:53:50 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=3949de15149800926d81d246b88b594da40e8683604cca22d12557bfec3f31e4 10:53:50 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559 10:53:50 Successfully built omero-dropbox 10:53:50 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox 10:53:53 10:53:53 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.21.3 portalocker-3.2.0 10:53:53 + for x in *.gz 10:53:53 + pip install omero_marshal-0.9.2.dev0.tar.gz 10:53:53 Processing ./omero_marshal-0.9.2.dev0.tar.gz 10:53:53 Installing build dependencies: started 10:53:54 Installing build dependencies: finished with status 'done' 10:53:54 Getting requirements to build wheel: started 10:53:54 Getting requirements to build wheel: finished with status 'done' 10:53:54 Preparing metadata (pyproject.toml): started 10:53:55 Preparing metadata (pyproject.toml): finished with status 'done' 10:53:55 Building wheels for collected packages: omero_marshal 10:53:55 Building wheel for omero_marshal (pyproject.toml): started 10:53:55 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 10:53:55 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=bb53e3f6838c16ad46c1f7a7cbdc5fd878d165e2413763a1f7fedbdd23beae16 10:53:55 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a 10:53:55 Successfully built omero_marshal 10:53:55 Installing collected packages: omero_marshal 10:53:55 Successfully installed omero_marshal-0.9.2.dev0 10:53:55 + for x in *.gz 10:53:55 + pip install omero_py-5.22.0.dev0.tar.gz 10:53:55 Processing ./omero_py-5.22.0.dev0.tar.gz 10:53:56 Installing build dependencies: started 10:53:57 Installing build dependencies: finished with status 'done' 10:53:57 Getting requirements to build wheel: started 10:53:57 Getting requirements to build wheel: finished with status 'done' 10:53:57 Preparing metadata (pyproject.toml): started 10:53:57 Preparing metadata (pyproject.toml): finished with status 'done' 10:53:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4) 10:53:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0) 10:53:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0) 10:53:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0) 10:53:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3) 10:53:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5) 10:53:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5) 10:53:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0) 10:53:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4) 10:53:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11) 10:53:57 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2) 10:53:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4) 10:53:57 Building wheels for collected packages: omero-py 10:53:57 Building wheel for omero-py (pyproject.toml): started 10:53:58 Building wheel for omero-py (pyproject.toml): finished with status 'done' 10:53:58 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=38c58703400c90cbf3cc0210bafeac01bd862ff9d60478e33cd36ea946cd4cee 10:53:58 Stored in directory: /home/omero/.cache/pip/wheels/49/1e/74/58987fa60a9f6faa550bb72f45a160140f621644781946afb3 10:53:58 Successfully built omero-py 10:53:58 Installing collected packages: omero-py 10:53:58 Attempting uninstall: omero-py 10:53:58 Found existing installation: omero-py 5.21.3 10:53:58 Uninstalling omero-py-5.21.3: 10:53:59 Successfully uninstalled omero-py-5.21.3 10:54:00 Successfully installed omero-py-5.22.0.dev0 10:54:00 + for x in *.gz 10:54:00 + pip install omero_scripts-5.9.2.dev0.tar.gz 10:54:01 Processing ./omero_scripts-5.9.2.dev0.tar.gz 10:54:01 Installing build dependencies: started 10:54:01 Installing build dependencies: finished with status 'done' 10:54:01 Getting requirements to build wheel: started 10:54:02 Getting requirements to build wheel: finished with status 'done' 10:54:02 Preparing metadata (pyproject.toml): started 10:54:02 Preparing metadata (pyproject.toml): finished with status 'done' 10:54:02 Building wheels for collected packages: omero-scripts 10:54:02 Building wheel for omero-scripts (pyproject.toml): started 10:54:02 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 10:54:02 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=0e00776f128d2a5bb6e871f0ecd2704765121b2310470d834c31f22479e124ec 10:54:02 Stored in directory: /home/omero/.cache/pip/wheels/6c/06/35/0bc12bfe51e7f53c18a682ede8f5b472bca001e8bc51e8a022 10:54:02 Successfully built omero-scripts 10:54:02 Installing collected packages: omero-scripts 10:54:02 Successfully installed omero-scripts-5.9.2.dev0 10:54:03 + for x in *.gz 10:54:03 + pip install omero_web-5.30.1.dev0.tar.gz 10:54:03 Processing ./omero_web-5.30.1.dev0.tar.gz 10:54:03 Installing build dependencies: started 10:54:04 Installing build dependencies: finished with status 'done' 10:54:04 Getting requirements to build wheel: started 10:54:04 Getting requirements to build wheel: finished with status 'done' 10:54:04 Preparing metadata (pyproject.toml): started 10:54:04 Preparing metadata (pyproject.toml): finished with status 'done' 10:54:04 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0) 10:54:05 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0) 10:54:05 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) 10:54:05 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0) 10:54:05 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB) 10:54:05 Collecting django-pipeline (from omero-web==5.30.1.dev0) 10:54:05 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 10:54:05 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0) 10:54:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 10:54:05 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0) 10:54:05 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB) 10:54:05 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0) 10:54:05 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 10:54:05 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0) 10:54:05 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.1.0) 10:54:05 Collecting pytz (from omero-web==5.30.1.dev0) 10:54:05 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) 10:54:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0) 10:54:05 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0) 10:54:05 Collecting importlib-resources (from omero-web==5.30.1.dev0) 10:54:05 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 10:54:05 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0) 10:54:05 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB) 10:54:05 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0) 10:54:05 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) 10:54:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4) 10:54:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0) 10:54:05 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.4.0) 10:54:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3) 10:54:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5) 10:54:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5) 10:54:05 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (80.9.0) 10:54:05 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0) 10:54:05 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 10:54:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4) 10:54:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11) 10:54:05 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2) 10:54:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2026.1.4) 10:54:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 10:54:05 Using cached django-5.2.9-py3-none-any.whl (8.3 MB) 10:54:05 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB) 10:54:05 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) 10:54:05 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 10:54:05 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) 10:54:05 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB) 10:54:05 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 10:54:05 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 10:54:05 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) 10:54:05 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 10:54:05 Building wheels for collected packages: omero-web 10:54:05 Building wheel for omero-web (pyproject.toml): started 10:54:06 Building wheel for omero-web (pyproject.toml): finished with status 'done' 10:54:06 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=c0b64d8acc34b41b47b359e17b0565ed9487e8fb7e54834669f061f89c43cce6 10:54:06 Stored in directory: /home/omero/.cache/pip/wheels/25/96/4f/2ec648b1980762e44166954499e5bbc51d7ea44ad9a2fdfbc4 10:54:06 Successfully built omero-web 10:54:06 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 10:54:09 10:54:09 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0 10:54:09 + cd /home/omero/workspace/OMERO-training/OMERO.server 10:54:09 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh 10:54:09 + HOSTNAME=9aa82dd07910 10:54:09 + PORT=4064 10:54:09 + WEBHOST=http://nginx/web 10:54:09 + SERVER_NAME=omero 10:54:09 + ROOT_PASSWORD=omero 10:54:09 + GROUP_NAME=training_group 10:54:09 + GROUP_NAME_2=training_group-2 10:54:09 + USER_NAME=training_user 10:54:09 + USER_NAME_2=training_user-2 10:54:09 + LIGHTADMIN_USER_NAME=ladmin_user 10:54:09 + USER_PASSWORD=ome 10:54:09 + CONFIG_FILENAME=training_ice.config 10:54:09 + omero login root@9aa82dd07910:4064 -w omero 10:54:10 Created session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:10 + omero group add training_group --type read-only --ignore-existing 10:54:11 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:11 Group exists: training_group (id=3) 10:54:11 + omero group add training_group-2 --type read-only --ignore-existing 10:54:12 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:12 Group exists: training_group-2 (id=4) 10:54:12 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome 10:54:13 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:13 User exists: training_user (id=2) 10:54:13 + omero user joingroup --name training_user --group-name training_group training_group-2 10:54:14 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:14 2 is already in group 3 10:54:14 2 is already in group 4 10:54:14 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome 10:54:14 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:14 User exists: training_user-2 (id=3) 10:54:15 + omero user joingroup --name training_user-2 --group-name training_group training_group-2 10:54:15 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:15 3 is already in group 3 10:54:15 3 is already in group 4 10:54:15 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome 10:54:16 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:16 User exists: ladmin_user (id=4) 10:54:16 + omero user joingroup --name ladmin_user --group-name training_group training_group-2 10:54:17 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:17 4 is already in group 3 10:54:17 4 is already in group 4 10:54:17 ++ omero user info ladmin_user --style plain 10:54:17 ++ cut -d, -f1 10:54:18 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:18 + id=4 10:54:18 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true 10:54:19 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system 10:54:19 Experimenter:4 10:54:19 + omero logout 10:54:20 + touch test.fake 10:54:20 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group 10:54:21 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:21 + nProjects=1 10:54:21 + nDatasets=2 10:54:21 + echo 'Creating projects and datasets' 10:54:21 Creating projects and datasets 10:54:21 + (( i=1 )) 10:54:21 + (( i<=1 )) 10:54:21 ++ omero obj new Project 'name=Project 1' 10:54:22 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:22 + project=Project:307 10:54:22 + (( j=1 )) 10:54:22 + (( j<=2 )) 10:54:22 ++ omero obj new Dataset 'name=Dataset 1-1' 10:54:23 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:23 + dataset=Dataset:313 10:54:23 + omero obj new ProjectDatasetLink parent=Project:307 child=Dataset:313 10:54:24 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:24 ProjectDatasetLink:304 10:54:24 + echo 'Importing image into dataset' 10:54:24 Importing image into dataset 10:54:24 + omero import -d Dataset:313 test.fake --debug ERROR 10:54:24 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:25 2026-01-05 10:54:25,468 254 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT 10:54:25 2026-01-05 10:54:25,483 269 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026 10:54:32 Image:813 10:54:32 Other imported objects: 10:54:32 Fileset:307 10:54:32 10:54:32 ==> Summary 10:54:32 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.967 10:54:32 + (( j++ )) 10:54:32 + (( j<=2 )) 10:54:32 ++ omero obj new Dataset 'name=Dataset 1-2' 10:54:33 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:33 + dataset=Dataset:314 10:54:33 + omero obj new ProjectDatasetLink parent=Project:307 child=Dataset:314 10:54:34 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:34 ProjectDatasetLink:305 10:54:34 + echo 'Importing image into dataset' 10:54:34 Importing image into dataset 10:54:34 + omero import -d Dataset:314 test.fake --debug ERROR 10:54:35 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:35 2026-01-05 10:54:35,741 237 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT 10:54:35 2026-01-05 10:54:35,756 252 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026 10:54:36 2026-01-05 10:54:36,836 1332 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc." 10:54:37 Image:814 10:54:37 Other imported objects: 10:54:37 Fileset:308 10:54:37 10:54:37 ==> Summary 10:54:37 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.919 10:54:37 + (( j++ )) 10:54:37 + (( j<=2 )) 10:54:37 + (( i++ )) 10:54:37 + (( i<=1 )) 10:54:37 + (( j=1 )) 10:54:37 + (( j<=2 )) 10:54:37 + omero obj new Dataset 'name=Orphaned dataset 1' 10:54:38 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:38 Dataset:315 10:54:38 + (( j++ )) 10:54:38 + (( j<=2 )) 10:54:38 + omero obj new Dataset 'name=Orphaned dataset 2' 10:54:39 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:39 Dataset:316 10:54:39 + (( j++ )) 10:54:39 + (( j<=2 )) 10:54:39 + echo 'Importing image file' 10:54:39 Importing image file 10:54:39 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake' 10:54:39 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake' 10:54:43 ++ sed -n -e 's/^Image://p' image_import.log 10:54:43 + imageid=815 10:54:43 ++ omero obj new MapAnnotation 10:54:44 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:44 + MAP=MapAnnotation:314 10:54:44 + omero obj map-set MapAnnotation:314 mapValue testkey testvalue 10:54:45 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:45 MapAnnotation:314 10:54:45 + omero obj new ImageAnnotationLink parent=Image:815 child=MapAnnotation:314 10:54:46 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:46 ImageAnnotationLink:304 10:54:46 ++ omero obj new Screen name=Screen 10:54:47 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:47 + screen=Screen:304 10:54:47 ++ omero obj new Plate name=Plate 10:54:48 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:48 + plate=Plate:305 10:54:48 + omero obj new ScreenPlateLink parent=Screen:304 child=Plate:305 10:54:49 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:54:49 ScreenPlateLink:303 10:54:49 + echo 'Importing SPW file' 10:54:49 Importing SPW file 10:54:49 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' 10:54:49 + omero import -r Screen:304 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' 10:54:58 ++ sed -n -e 's/^Plate://p' plate_import.log 10:54:58 + plateid=306 10:54:58 + omero logout 10:54:59 + omero login training_user-2@9aa82dd07910:4064 -w ome -g training_group 10:55:00 Created session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:55:00 + omero obj new Project 'name=Project 0' 10:55:00 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:55:00 Project:308 10:55:01 + omero obj new Dataset 'name=Dataset 0' 10:55:01 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:55:01 Dataset:317 10:55:01 + omero import test.fake --debug ERROR 10:55:02 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:55:03 2026-01-05 10:55:03,264 248 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT 10:55:03 2026-01-05 10:55:03,279 263 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026 10:55:04 2026-01-05 10:55:04,384 1368 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc." 10:55:05 Image:819 10:55:05 Other imported objects: 10:55:05 Fileset:311 10:55:05 10:55:05 ==> Summary 10:55:05 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.622 10:55:05 + omero obj new Screen name=Screen 10:55:05 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:55:05 Screen:305 10:55:06 + omero obj new Plate name=Plate 10:55:06 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group 10:55:06 Plate:307 10:55:06 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group-2 10:55:07 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2 10:55:07 + omero obj new Project 'name=Project 0' 10:55:08 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2 10:55:08 Project:309 10:55:08 + omero obj new Dataset 'name=Dataset 0' 10:55:09 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2 10:55:09 Dataset:318 10:55:09 + omero import test.fake --debug ERROR 10:55:10 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2 10:55:11 2026-01-05 10:55:11,017 241 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT 10:55:11 2026-01-05 10:55:11,032 256 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026 10:55:12 2026-01-05 10:55:12,101 1325 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc." 10:55:12 Image:820 10:55:12 Other imported objects: 10:55:12 Fileset:312 10:55:12 10:55:12 ==> Summary 10:55:12 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.604 10:55:12 + omero obj new Screen name=Screen 10:55:13 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2 10:55:13 Screen:306 10:55:13 + omero obj new Plate name=Plate 10:55:14 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2 10:55:14 Plate:308 10:55:14 + omero logout 10:55:15 + echo omero.host=9aa82dd07910 10:55:15 + echo omero.port=4064 10:55:15 + echo omero.webhost=http://nginx/web 10:55:15 + echo omero.servername=omero 10:55:15 + echo omero.user=training_user 10:55:15 + echo omero.pass=ome 10:55:15 + echo omero.group=training_group 10:55:15 + echo omero.projectid=307 10:55:15 + echo omero.datasetid=314 10:55:15 + echo omero.imageid=815 10:55:15 + echo omero.plateid=306 10:55:15 + echo omero.screenid=304 10:55:15 + echo omero.group2=training_group-2 10:55:15 + echo omero.ladmin=ladmin_user 10:55:15 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake' 10:55:15 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training 10:55:15 + omero sessions clear 10:55:16 1 session(s) cleared 10:55:16 !! 01/05/26 10:55:16.459 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config 10:55:16 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config 10:55:16 + pip install --upgrade requests 10:55:16 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.5) 10:55:16 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.4) 10:55:16 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.11) 10:55:16 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.6.2) 10:55:16 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2026.1.4) 10:55:16 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python 10:55:23 Running training suite 10:55:23 created 20 shapes 10:55:23 retrieved 20 shapes in 4 batches 10:55:23 Current user: 10:55:23 ID: 2 10:55:23 Username: training_user 10:55:23 Full Name: training_user training_user 10:55:23 Is Admin: False 10:55:23 [] 10:55:23 Member of: 10:55:23 ID: 3 Name: training_group 10:55:23 ID: 4 Name: training_group-2 10:55:23 Current group: training_group 10:55:23 Group owners: 10:55:23 Group members: 10:55:23 ID: 2 UserName: training_user Name: training_user training_user 10:55:23 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2 10:55:23 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user 10:55:23 Owner of: 10:55:23 Admins: 10:55:23 ID: 0 UserName: root Name: root root 10:55:23 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user 10:55:23 Created new Image:821 Name:"numpy image" 10:55:23 newPlane for z,t: 0 0 uint8 0 127 10:55:23 newPlane for z,t: 0 1 uint8 0 127 10:55:23 newPlane for z,t: 0 2 uint8 0 127 10:55:23 newPlane for z,t: 0 3 uint8 0 127 10:55:23 newPlane for z,t: 0 4 uint8 0 127 10:55:23 newPlane for z,t: 0 5 uint8 0 127 10:55:23 newPlane for z,t: 0 6 uint8 0 127 10:55:23 newPlane for z,t: 0 7 uint8 0 127 10:55:23 newPlane for z,t: 0 8 uint8 0 127 10:55:23 newPlane for z,t: 0 9 uint8 0 127 10:55:23 newPlane for z,t: 1 0 uint8 0 127 10:55:23 newPlane for z,t: 1 1 uint8 0 127 10:55:23 newPlane for z,t: 1 2 uint8 0 127 10:55:23 newPlane for z,t: 1 3 uint8 0 127 10:55:23 newPlane for z,t: 1 4 uint8 0 127 10:55:23 newPlane for z,t: 1 5 uint8 0 127 10:55:23 newPlane for z,t: 1 6 uint8 0 127 10:55:23 newPlane for z,t: 1 7 uint8 0 127 10:55:23 newPlane for z,t: 1 8 uint8 0 127 10:55:23 newPlane for z,t: 1 9 uint8 0 127 10:55:23 newPlane for z,t: 2 0 uint8 0 127 10:55:23 newPlane for z,t: 2 1 uint8 0 127 10:55:23 newPlane for z,t: 2 2 uint8 0 127 10:55:23 newPlane for z,t: 2 3 uint8 0 127 10:55:23 newPlane for z,t: 2 4 uint8 0 127 10:55:23 newPlane for z,t: 2 5 uint8 0 127 10:55:23 newPlane for z,t: 2 6 uint8 0 127 10:55:23 newPlane for z,t: 2 7 uint8 0 127 10:55:23 newPlane for z,t: 2 8 uint8 0 127 10:55:23 newPlane for z,t: 2 9 uint8 0 127 10:55:23 newPlane for z,t: 3 0 uint8 0 127 10:55:23 newPlane for z,t: 3 1 uint8 0 127 10:55:23 newPlane for z,t: 3 2 uint8 0 127 10:55:23 newPlane for z,t: 3 3 uint8 0 127 10:55:23 newPlane for z,t: 3 4 uint8 0 127 10:55:23 newPlane for z,t: 3 5 uint8 0 127 10:55:23 newPlane for z,t: 3 6 uint8 0 127 10:55:23 newPlane for z,t: 3 7 uint8 0 127 10:55:23 newPlane for z,t: 3 8 uint8 0 127 10:55:23 newPlane for z,t: 3 9 uint8 0 127 10:55:23 newPlane for z,t: 4 0 uint8 0 127 10:55:23 newPlane for z,t: 4 1 uint8 0 127 10:55:23 newPlane for z,t: 4 2 uint8 0 127 10:55:23 newPlane for z,t: 4 3 uint8 0 127 10:55:23 newPlane for z,t: 4 4 uint8 0 127 10:55:23 newPlane for z,t: 4 5 uint8 0 127 10:55:23 newPlane for z,t: 4 6 uint8 0 127 10:55:23 newPlane for z,t: 4 7 uint8 0 127 10:55:23 newPlane for z,t: 4 8 uint8 0 127 10:55:23 newPlane for z,t: 4 9 uint8 0 127 10:55:23 Deleting, please wait. 10:55:23 Error? False 10:55:23 815 test&sizeT=10&sizeZ=5&sizeC=3.fake 10:55:23 training_user_2/Blitz-0-Ice.ThreadPool.Server-448/2026-01/05/10-54-42.114/ test&sizeT=10&sizeZ=5&sizeC=3.fake 10:55:23 1 10:55:23 training_user_2/Blitz-0-Ice.ThreadPool.Server-448/2026-01/05/10-54-42.114/ test&sizeT=10&sizeZ=5&sizeC=3.fake 10:55:23 Current group: training_group 10:55:23 Permissions: READ-ONLY (rwr---) 10:55:23 Project 0 Owner: training_user-2 training_user-2 10:55:23 Project 1 Owner: training_user training_user 10:55:23 Project 0 Owner: training_user-2 training_user-2 10:55:23 Project 1 Owner: training_user training_user 10:55:23 Project 0 Owner: training_user-2 training_user-2 10:55:23 Project 1 Owner: training_user training_user 10:55:23 Project 0 Owner: training_user-2 training_user-2 10:55:23 Project 1 Owner: training_user training_user 10:55:23 Project 0 Owner: training_user-2 training_user-2 10:55:23 Project 1 Owner: training_user training_user 10:55:23 Project 0 Owner: training_user-2 training_user-2 10:55:23 Project 1 Owner: training_user training_user 10:55:23 Project 0 Owner: training_user-2 training_user-2 10:55:23 Project 1 Owner: training_user training_user 10:55:23 Project 0 Owner: training_user-2 training_user-2 10:55:23 Project 1 Owner: training_user training_user 10:55:23 Project 0 Owner: training_user-2 training_user-2 10:55:23 Project 1 Owner: training_user training_user 10:55:23 Image: <_ImageWrapper id=815> 10:55:23 Image: <_ImageWrapper id=815> Group: training_group 3 10:55:23 Image: <_ImageWrapper id=815> Channel: 0 10:55:23 Channel: 1 10:55:23 Channel: 2 10:55:23 10:55:23 10:55:23 original_metadata 10:55:23 global_metadata 10:55:23 series_metadata 10:55:23 10:55:23 Plane at zct: 0 0 0 10:55:23 [[ 0 0 0 ... 253 254 255] 10:55:23 [ 0 0 0 ... 253 254 255] 10:55:23 [ 0 0 0 ... 253 254 255] 10:55:23 ... 10:55:23 [ 0 1 2 ... 253 254 255] 10:55:23 [ 0 1 2 ... 253 254 255] 10:55:23 [ 0 1 2 ... 253 254 255]] 10:55:23 shape: (512, 512) 10:55:23 min: 0 max: 255 pixel type: uint8 10:55:23 10:55:23 Z stack of tiles: 10:55:23 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 10:55:23 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 10:55:23 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 10:55:23 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 10:55:23 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450 10:55:23 10:55:23 Hyper stack of planes: 10:55:23 plane zct: (2, 0, 0) min: 0 max: 255 10:55:23 plane zct: (2, 0, 1) min: 0 max: 255 10:55:23 plane zct: (2, 0, 2) min: 0 max: 255 10:55:23 plane zct: (2, 0, 3) min: 0 max: 255 10:55:23 plane zct: (2, 0, 4) min: 0 max: 255 10:55:23 plane zct: (2, 0, 5) min: 0 max: 255 10:55:23 plane zct: (2, 0, 6) min: 0 max: 255 10:55:23 plane zct: (2, 0, 7) min: 0 max: 255 10:55:23 plane zct: (2, 0, 8) min: 0 max: 255 10:55:23 plane zct: (2, 0, 9) min: 0 max: 255 10:55:23 plane zct: (2, 1, 0) min: 0 max: 255 10:55:23 plane zct: (2, 1, 1) min: 0 max: 255 10:55:23 plane zct: (2, 1, 2) min: 0 max: 255 10:55:23 plane zct: (2, 1, 3) min: 0 max: 255 10:55:23 plane zct: (2, 1, 4) min: 0 max: 255 10:55:23 plane zct: (2, 1, 5) min: 0 max: 255 10:55:23 plane zct: (2, 1, 6) min: 0 max: 255 10:55:23 plane zct: (2, 1, 7) min: 0 max: 255 10:55:23 plane zct: (2, 1, 8) min: 0 max: 255 10:55:23 plane zct: (2, 1, 9) min: 0 max: 255 10:55:23 plane zct: (2, 2, 0) min: 0 max: 255 10:55:23 plane zct: (2, 2, 1) min: 0 max: 255 10:55:23 plane zct: (2, 2, 2) min: 0 max: 255 10:55:23 plane zct: (2, 2, 3) min: 0 max: 255 10:55:23 plane zct: (2, 2, 4) min: 0 max: 255 10:55:23 plane zct: (2, 2, 5) min: 0 max: 255 10:55:23 plane zct: (2, 2, 6) min: 0 max: 255 10:55:23 plane zct: (2, 2, 7) min: 0 max: 255 10:55:23 plane zct: (2, 2, 8) min: 0 max: 255 10:55:23 plane zct: (2, 2, 9) min: 0 max: 255 10:55:23 plane zct: (3, 0, 0) min: 0 max: 255 10:55:23 plane zct: (3, 0, 1) min: 0 max: 255 10:55:23 plane zct: (3, 0, 2) min: 0 max: 255 10:55:23 plane zct: (3, 0, 3) min: 0 max: 255 10:55:23 plane zct: (3, 0, 4) min: 0 max: 255 10:55:23 plane zct: (3, 0, 5) min: 0 max: 255 10:55:23 plane zct: (3, 0, 6) min: 0 max: 255 10:55:23 plane zct: (3, 0, 7) min: 0 max: 255 10:55:23 plane zct: (3, 0, 8) min: 0 max: 255 10:55:23 plane zct: (3, 0, 9) min: 0 max: 255 10:55:23 plane zct: (3, 1, 0) min: 0 max: 255 10:55:23 plane zct: (3, 1, 1) min: 0 max: 255 10:55:23 plane zct: (3, 1, 2) min: 0 max: 255 10:55:23 plane zct: (3, 1, 3) min: 0 max: 255 10:55:23 plane zct: (3, 1, 4) min: 0 max: 255 10:55:23 plane zct: (3, 1, 5) min: 0 max: 255 10:55:23 plane zct: (3, 1, 6) min: 0 max: 255 10:55:23 plane zct: (3, 1, 7) min: 0 max: 255 10:55:23 plane zct: (3, 1, 8) min: 0 max: 255 10:55:23 plane zct: (3, 1, 9) min: 0 max: 255 10:55:23 plane zct: (3, 2, 0) min: 0 max: 255 10:55:23 plane zct: (3, 2, 1) min: 0 max: 255 10:55:23 plane zct: (3, 2, 2) min: 0 max: 255 10:55:23 plane zct: (3, 2, 3) min: 0 max: 255 10:55:23 plane zct: (3, 2, 4) min: 0 max: 255 10:55:23 plane zct: (3, 2, 5) min: 0 max: 255 10:55:23 plane zct: (3, 2, 6) min: 0 max: 255 10:55:23 plane zct: (3, 2, 7) min: 0 max: 255 10:55:23 plane zct: (3, 2, 8) min: 0 max: 255 10:55:23 plane zct: (3, 2, 9) min: 0 max: 255 10:55:23 plane zct: (4, 0, 0) min: 0 max: 255 10:55:23 plane zct: (4, 0, 1) min: 0 max: 255 10:55:23 plane zct: (4, 0, 2) min: 0 max: 255 10:55:23 plane zct: (4, 0, 3) min: 0 max: 255 10:55:23 plane zct: (4, 0, 4) min: 0 max: 255 10:55:23 plane zct: (4, 0, 5) min: 0 max: 255 10:55:23 plane zct: (4, 0, 6) min: 0 max: 255 10:55:23 plane zct: (4, 0, 7) min: 0 max: 255 10:55:23 plane zct: (4, 0, 8) min: 0 max: 255 10:55:23 plane zct: (4, 0, 9) min: 0 max: 255 10:55:23 plane zct: (4, 1, 0) min: 0 max: 255 10:55:23 plane zct: (4, 1, 1) min: 0 max: 255 10:55:23 plane zct: (4, 1, 2) min: 0 max: 255 10:55:23 plane zct: (4, 1, 3) min: 0 max: 255 10:55:23 plane zct: (4, 1, 4) min: 0 max: 255 10:55:23 plane zct: (4, 1, 5) min: 0 max: 255 10:55:23 plane zct: (4, 1, 6) min: 0 max: 255 10:55:23 plane zct: (4, 1, 7) min: 0 max: 255 10:55:23 plane zct: (4, 1, 8) min: 0 max: 255 10:55:23 plane zct: (4, 1, 9) min: 0 max: 255 10:55:23 plane zct: (4, 2, 0) min: 0 max: 255 10:55:23 plane zct: (4, 2, 1) min: 0 max: 255 10:55:23 plane zct: (4, 2, 2) min: 0 max: 255 10:55:23 plane zct: (4, 2, 3) min: 0 max: 255 10:55:23 plane zct: (4, 2, 4) min: 0 max: 255 10:55:23 plane zct: (4, 2, 5) min: 0 max: 255 10:55:23 plane zct: (4, 2, 6) min: 0 max: 255 10:55:23 plane zct: (4, 2, 7) min: 0 max: 255 10:55:23 plane zct: (4, 2, 8) min: 0 max: 255 10:55:23 plane zct: (4, 2, 9) min: 0 max: 255 10:55:23 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 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1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]} 10:55:23 10:55:23 List Projects: 10:55:23 ================================================== 10:55:23 Project:1 Name:"Project 1" (owner=training_user) 10:55:23 Dataset:1 Name:"Dataset 1-1" (owner=training_user) 10:55:23 Image:1 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:2 Name:"Dataset 1-2" (owner=training_user) 10:55:23 Image:12 Name:"New Image" (owner=training_user) 10:55:23 Image:2 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:7 Name:"New Dataset" (owner=training_user) 10:55:23 Project:7 Name:"Project 1" (owner=training_user) 10:55:23 Dataset:13 Name:"Dataset 1-1" (owner=training_user) 10:55:23 Image:13 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:14 Name:"Dataset 1-2" (owner=training_user) 10:55:23 Image:24 Name:"New Image" (owner=training_user) 10:55:23 Image:25 Name:"newImageFrom15" (owner=training_user) 10:55:23 Image:14 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:19 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:29 Name:"new Name 1" (owner=training_user) 10:55:23 Dataset:30 Name:"new Name 2" (owner=training_user) 10:55:23 Project:51 Name:"Project 1" (owner=training_user) 10:55:23 Dataset:51 Name:"Dataset 1-1" (owner=training_user) 10:55:23 Image:551 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:52 Name:"Dataset 1-2" (owner=training_user) 10:55:23 Image:562 Name:"New Image" (owner=training_user) 10:55:23 Image:563 Name:"newImageFrom553" (owner=training_user) 10:55:23 Image:552 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:57 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:67 Name:"new Name 1" (owner=training_user) 10:55:23 Dataset:68 Name:"new Name 2" (owner=training_user) 10:55:23 Project:101 Name:"Project 1" (owner=training_user) 10:55:23 Dataset:101 Name:"Dataset 1-1" (owner=training_user) 10:55:23 Image:601 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:102 Name:"Dataset 1-2" (owner=training_user) 10:55:23 Image:612 Name:"New Image" (owner=training_user) 10:55:23 Image:613 Name:"newImageFrom603" (owner=training_user) 10:55:23 Image:602 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:107 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:117 Name:"new Name 1" (owner=training_user) 10:55:23 Dataset:118 Name:"new Name 2" (owner=training_user) 10:55:23 Project:151 Name:"Project 1" (owner=training_user) 10:55:23 Dataset:151 Name:"Dataset 1-1" (owner=training_user) 10:55:23 Image:651 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:152 Name:"Dataset 1-2" (owner=training_user) 10:55:23 Image:662 Name:"New Image" (owner=training_user) 10:55:23 Image:663 Name:"newImageFrom653" (owner=training_user) 10:55:23 Image:652 Name:"test.fake" (owner=training_user) 10:55:23 Dataset:157 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:167 Name:"new Name 1" (owner=training_user) 10:55:23 Dataset:168 Name:"new Name 2" (owner=training_user) 10:55:23 10:55:23 List orphaned Datasets: 10:55:23 ================================================== 10:55:23 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user) 10:55:23 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user) 10:55:23 Dataset:5 Name:"Dataset 0" (owner=training_user-2) 10:55:23 Dataset:15 Name:"Orphaned dataset 1" (owner=training_user) 10:55:23 Dataset:16 Name:"Orphaned dataset 2" (owner=training_user) 10:55:23 Dataset:10 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:9 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:8 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:11 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:12 Name:"New Dataset2" (owner=training_user) 10:55:23 Dataset:17 Name:"Dataset 0" (owner=training_user-2) 10:55:23 Dataset:25 Name:"FileAnnotationDelete" (owner=training_user) 10:55:23 Dataset:22 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:21 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:20 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:23 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:24 Name:"New Dataset2" (owner=training_user) 10:55:23 Dataset:26 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:27 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:28 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user) 10:55:23 Dataset:64 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:65 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:66 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user) 10:55:23 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user) 10:55:23 Dataset:55 Name:"Dataset 0" (owner=training_user-2) 10:55:23 Dataset:60 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:59 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:58 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:61 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:62 Name:"New Dataset2" (owner=training_user) 10:55:23 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user) 10:55:23 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user) 10:55:23 Dataset:105 Name:"Dataset 0" (owner=training_user-2) 10:55:23 Dataset:110 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:109 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:108 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:111 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:112 Name:"New Dataset2" (owner=training_user) 10:55:23 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user) 10:55:23 Dataset:114 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:115 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:116 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user) 10:55:23 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user) 10:55:23 Dataset:155 Name:"Dataset 0" (owner=training_user-2) 10:55:23 Dataset:160 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:159 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:158 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:161 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:162 Name:"New Dataset2" (owner=training_user) 10:55:23 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user) 10:55:23 Dataset:164 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:165 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:166 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:203 Name:"Orphaned dataset 1" (owner=training_user) 10:55:23 Dataset:204 Name:"Orphaned dataset 2" (owner=training_user) 10:55:23 Dataset:205 Name:"Dataset 0" (owner=training_user-2) 10:55:23 Dataset:210 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:209 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:208 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:211 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:212 Name:"New Dataset2" (owner=training_user) 10:55:23 Dataset:253 Name:"Orphaned dataset 1" (owner=training_user) 10:55:23 Dataset:254 Name:"Orphaned dataset 2" (owner=training_user) 10:55:23 Dataset:255 Name:"Dataset 0" (owner=training_user-2) 10:55:23 Dataset:260 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:259 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:258 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:261 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:262 Name:"New Dataset2" (owner=training_user) 10:55:23 Dataset:303 Name:"Orphaned dataset 1" (owner=training_user) 10:55:23 Dataset:304 Name:"Orphaned dataset 2" (owner=training_user) 10:55:23 Dataset:305 Name:"Dataset 0" (owner=training_user-2) 10:55:23 Dataset:310 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:309 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:308 Name:"MyDataset" (owner=training_user) 10:55:23 Dataset:311 Name:"New Dataset" (owner=training_user) 10:55:23 Dataset:312 Name:"New Dataset2" (owner=training_user) 10:55:23 Dataset:315 Name:"Orphaned dataset 1" (owner=training_user) 10:55:23 Dataset:316 Name:"Orphaned dataset 2" (owner=training_user) 10:55:23 Dataset:317 Name:"Dataset 0" (owner=training_user-2) 10:55:23 10:55:23 Images in Dataset: 314 10:55:23 ================================================== 10:55:23 Image:814 Name:"test.fake" (owner=training_user) 10:55:23 10:55:23 Image:815 10:55:23 ================================================== 10:55:23 test&sizeT=10&sizeZ=5&sizeC=3.fake 10:55:23 X: 512 10:55:23 Y: 512 10:55:23 Z: 5 10:55:23 C: 3 10:55:23 T: 10 10:55:23 Channel: 0 Color: (255, 0, 0) 10:55:23 Lookup table: None 10:55:23 Is reverse intensity? False 10:55:23 Channel: 1 Color: (0, 255, 0) 10:55:23 Lookup table: None 10:55:23 Is reverse intensity? False 10:55:23 Channel: 2 Color: (0, 0, 255) 10:55:23 Lookup table: None 10:55:23 Is reverse intensity? False 10:55:23 Pixel Size X: None 10:55:23 10:55:23 List Screens: 10:55:23 ================================================== 10:55:23 Screen:1 Name:"Screen" (owner=training_user) 10:55:23 Plate:1 Name:"Plate" (owner=training_user) 10:55:23 Plate:2 Name:"Plate Name 0" (owner=training_user) 10:55:23 Screen:4 Name:"Screen" (owner=training_user) 10:55:23 Plate:5 Name:"Plate" (owner=training_user) 10:55:23 Plate:6 Name:"Plate Name 0" (owner=training_user) 10:55:23 Screen:51 Name:"Screen" (owner=training_user) 10:55:23 Plate:51 Name:"Plate" (owner=training_user) 10:55:26 Plate:52 Name:"Plate Name 0" (owner=training_user) 10:55:26 Screen:101 Name:"Screen" (owner=training_user) 10:55:26 Plate:101 Name:"Plate" (owner=training_user) 10:55:26 Plate:102 Name:"Plate Name 0" (owner=training_user) 10:55:26 Screen:151 Name:"Screen" (owner=training_user) 10:55:26 Plate:151 Name:"Plate" (owner=training_user) 10:55:26 Plate:152 Name:"Plate Name 0" (owner=training_user) 10:55:26 Screen:201 Name:"Screen" (owner=training_user) 10:55:26 Plate:201 Name:"Plate" (owner=training_user) 10:55:26 Plate:202 Name:"Plate Name 0" (owner=training_user) 10:55:26 Screen:251 Name:"Screen" (owner=training_user) 10:55:26 Plate:251 Name:"Plate" (owner=training_user) 10:55:26 Plate:252 Name:"Plate Name 0" (owner=training_user) 10:55:26 Screen:301 Name:"Screen" (owner=training_user) 10:55:26 Plate:301 Name:"Plate" (owner=training_user) 10:55:26 Plate:302 Name:"Plate Name 0" (owner=training_user) 10:55:26 Screen:304 Name:"Screen" (owner=training_user) 10:55:26 Plate:305 Name:"Plate" (owner=training_user) 10:55:26 Plate:306 Name:"Plate Name 0" (owner=training_user) 10:55:26 Screen:2 Name:"Screen" (owner=training_user-2) 10:55:26 Screen:5 Name:"Screen" (owner=training_user-2) 10:55:26 Screen:52 Name:"Screen" (owner=training_user-2) 10:55:26 Screen:102 Name:"Screen" (owner=training_user-2) 10:55:26 Screen:152 Name:"Screen" (owner=training_user-2) 10:55:26 Screen:202 Name:"Screen" (owner=training_user-2) 10:55:26 Screen:252 Name:"Screen" (owner=training_user-2) 10:55:26 Screen:302 Name:"Screen" (owner=training_user-2) 10:55:26 Screen:305 Name:"Screen" (owner=training_user-2) 10:55:26 10:55:26 Plate:306 10:55:26 ================================================== 10:55:26 10:55:26 Number of fields: (0, 0) 10:55:26 10:55:26 Grid size: {'rows': 1, 'columns': 3} 10:55:26 10:55:26 Wells in Plate: Plate Name 0 10:55:26 Well: 0 0 Fields: 1 10:55:26 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 816 10:55:26 Well: 0 1 Fields: 1 10:55:26 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 818 10:55:26 Well: 0 2 Fields: 1 10:55:26 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 817 10:55:26 314 <class 'omero.model.MapAnnotationI'> 10:55:26 added by training_user 10:55:26 Image ID: 815 10:55:26 Annotation ID: 314 10:55:26 815 10:55:26 Channel rendering settings: 10:55:26 Name: 0 10:55:26 Color: FF0000 10:55:26 Active: True 10:55:26 Levels: 0.0 - 255.0 10:55:26 Name: 1 10:55:26 Color: 00FF00 10:55:26 Active: True 10:55:26 Levels: 0.0 - 255.0 10:55:26 Name: 2 10:55:26 Color: 0000FF 10:55:26 Active: True 10:55:26 Levels: 0.0 - 255.0 10:55:26 isGreyscaleRenderingModel: False 10:55:26 Default Z/T positions: 10:55:26 Z = 2, T = 0 10:55:26 Rendering Defs on Image: 10:55:26 ID: 412 (owner: training_user training_user) 10:55:26 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50 10:55:26 ROI: ID: 309 10:55:26 Shape: id 398 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0 10:55:26 Shape: id 399 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0 10:55:26 ROI: ID: 310 10:55:26 Shape: id 400 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0 10:55:26 ROI: ID: 311 10:55:26 Shape: id 401 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0 10:55:26 ROI: ID: 312 10:55:26 Shape: id 402 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0 10:55:26 ROI: ID: 313 10:55:26 <class 'omero.model.PolygonI'> Not supported by this code 10:55:26 Shape: id 403 theT 0 theZ 2 textValue test-Polygon 10:55:26 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287 10:55:26 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0 10:55:26 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767 10:55:26 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224 10:55:26 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012 10:55:26 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771 10:55:26 Removing Shape from ROI... 10:55:26 Deleting ROI: 314 10:55:26 Table Columns: 10:55:26 Uid 10:55:26 MyStringColumnInit 10:55:26 Row count: 10 10:55:26 10:55:26 Get All Data for rows: [3, 5, 7] 10:55:26 Data for Column: Uid 10:55:26 1 10:55:26 2 10:55:26 3 10:55:26 4 10:55:26 5 10:55:26 6 10:55:26 7 10:55:26 8 10:55:26 9 10:55:26 10 10:55:26 Data for Column: MyStringColumnInit 10:55:26 one 10:55:26 two 10:55:26 three 10:55:26 four 10:55:26 five 10:55:26 six 10:55:26 seven 10:55:26 eight 10:55:26 nine 10:55:26 ten 10:55:26 10:55:26 Get All Data for rows with slice: [3, 5, 7] 10:55:26 Data for Column: Uid 10:55:26 4 10:55:26 6 10:55:26 8 10:55:26 Data for Column: MyStringColumnInit 10:55:26 four 10:55:26 six 10:55:26 eight 10:55:26 10:55:26 Get Data for cols: [1] and between rows: 3 - 7 10:55:26 Data for Column: MyStringColumnInit 10:55:26 four 10:55:26 five 10:55:26 six 10:55:26 seven 10:55:26 10:55:26 Get Data for cols: [1] and between rows: 3 - 7 with slice 10:55:26 Data for Column: MyStringColumnInit 10:55:26 four 10:55:26 five 10:55:26 six 10:55:26 seven 10:55:26 Query Results for Column: Uid 10:55:26 3 10:55:26 4 10:55:26 5 10:55:26 6 10:55:26 7 10:55:26 8 10:55:26 Query Results for Column: MyStringColumnInit 10:55:26 three 10:55:26 four 10:55:26 five 10:55:26 six 10:55:26 seven 10:55:26 eight 10:55:26 Opened table with row-count: 10 10:55:26 New dataset, Id: 319 10:55:26 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0} 10:55:26 318 <class 'omero.model.TagAnnotationI'> added by training_user 10:55:26 Tag value: New Tag 10:55:26 319 <class 'omero.model.MapAnnotationI'> added by training_user 10:55:26 10:55:26 Creating an OriginalFile and FileAnnotation 10:55:26 Attaching FileAnnotation to Dataset: File ID: 320 , README.txt Size: 15 10:55:26 10:55:26 Annotations on Dataset: New Dataset 10:55:26 File ID: 939 README.txt Size: 15 10:55:26 10:55:26 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ... 10:55:26 File downloaded! 10:55:26 207 README.txt 10:55:26 320 README.txt 10:55:26 157 README.txt 10:55:26 107 README.txt 10:55:26 257 README.txt 10:55:26 7 README.txt 10:55:26 307 README.txt 10:55:26 57 README.txt 10:55:26 20 README.txt 10:55:26 Found Annotation with namespace: imperial.training.demo 10:55:26 Plane: 0 0 0 10:55:26 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)] 10:55:26 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)] 10:55:26 10:55:26 List Datasets: 10:55:26 ID: 322 Name: MyDataset 10:55:26 ID: 321 Name: MyDataset 10:55:26 ID: 320 Name: MyDataset 10:55:26 ID: 310 Name: MyDataset 10:55:26 ID: 309 Name: MyDataset 10:55:26 ID: 308 Name: MyDataset 10:55:26 ID: 260 Name: MyDataset 10:55:26 ID: 259 Name: MyDataset 10:55:26 ID: 258 Name: MyDataset 10:55:26 ID: 210 Name: MyDataset 10:55:26 ID: 209 Name: MyDataset 10:55:26 ID: 208 Name: MyDataset 10:55:26 ID: 166 Name: MyDataset 10:55:26 ID: 165 Name: MyDataset 10:55:26 ID: 164 Name: MyDataset 10:55:26 ID: 160 Name: MyDataset 10:55:26 ID: 159 Name: MyDataset 10:55:26 ID: 158 Name: MyDataset 10:55:26 ID: 116 Name: MyDataset 10:55:26 ID: 115 Name: MyDataset 10:55:26 ID: 114 Name: MyDataset 10:55:26 ID: 110 Name: MyDataset 10:55:26 ID: 109 Name: MyDataset 10:55:26 ID: 108 Name: MyDataset 10:55:26 ID: 66 Name: MyDataset 10:55:26 ID: 65 Name: MyDataset 10:55:26 ID: 64 Name: MyDataset 10:55:26 ID: 60 Name: MyDataset 10:55:26 ID: 59 Name: MyDataset 10:55:26 ID: 58 Name: MyDataset 10:55:26 ID: 28 Name: MyDataset 10:55:26 ID: 27 Name: MyDataset 10:55:26 ID: 26 Name: MyDataset 10:55:26 ID: 22 Name: MyDataset 10:55:26 ID: 21 Name: MyDataset 10:55:26 ID: 20 Name: MyDataset 10:55:26 ID: 10 Name: MyDataset 10:55:26 ID: 9 Name: MyDataset 10:55:26 ID: 8 Name: MyDataset 10:55:26 10:55:26 List Tags: 10:55:26 ID: 8 Text: MyTag Desc: MyTag 0 10:55:26 ID: 9 Text: MyTag Desc: MyTag 1 10:55:26 ID: 10 Text: MyTag Desc: MyTag 2 10:55:26 ID: 21 Text: MyTag Desc: MyTag 0 10:55:26 ID: 22 Text: MyTag Desc: MyTag 1 10:55:26 ID: 23 Text: MyTag Desc: MyTag 2 10:55:26 ID: 29 Text: MyTag Desc: MyTag 0 10:55:26 ID: 30 Text: MyTag Desc: MyTag 1 10:55:26 ID: 31 Text: MyTag Desc: MyTag 2 10:55:26 ID: 58 Text: MyTag Desc: MyTag 0 10:55:26 ID: 59 Text: MyTag Desc: MyTag 1 10:55:26 ID: 60 Text: MyTag Desc: MyTag 2 10:55:26 ID: 66 Text: MyTag Desc: MyTag 0 10:55:26 ID: 67 Text: MyTag Desc: MyTag 1 10:55:26 ID: 68 Text: MyTag Desc: MyTag 2 10:55:26 ID: 108 Text: MyTag Desc: MyTag 0 10:55:26 ID: 109 Text: MyTag Desc: MyTag 1 10:55:26 ID: 110 Text: MyTag Desc: MyTag 2 10:55:26 ID: 116 Text: MyTag Desc: MyTag 0 10:55:26 ID: 117 Text: MyTag Desc: MyTag 1 10:55:26 ID: 118 Text: MyTag Desc: MyTag 2 10:55:26 ID: 158 Text: MyTag Desc: MyTag 0 10:55:26 ID: 159 Text: MyTag Desc: MyTag 1 10:55:26 ID: 160 Text: MyTag Desc: MyTag 2 10:55:26 ID: 166 Text: MyTag Desc: MyTag 0 10:55:26 ID: 167 Text: MyTag Desc: MyTag 1 10:55:26 ID: 168 Text: MyTag Desc: MyTag 2 10:55:26 ID: 208 Text: MyTag Desc: MyTag 0 10:55:26 ID: 209 Text: MyTag Desc: MyTag 1 10:55:26 ID: 210 Text: MyTag Desc: MyTag 2 10:55:26 ID: 258 Text: MyTag Desc: MyTag 0 10:55:26 ID: 259 Text: MyTag Desc: MyTag 1 10:55:26 ID: 260 Text: MyTag Desc: MyTag 2 10:55:26 ID: 308 Text: MyTag Desc: MyTag 0 10:55:26 ID: 309 Text: MyTag Desc: MyTag 1 10:55:26 ID: 310 Text: MyTag Desc: MyTag 2 10:55:26 ID: 321 Text: MyTag Desc: MyTag 0 10:55:26 ID: 322 Text: MyTag Desc: MyTag 1 10:55:26 ID: 323 Text: MyTag Desc: MyTag 2 10:55:26 New dataset, Id: 323 10:55:26 New dataset 2, Id: 324 10:55:26 test&sizeT=10&sizeZ=5&sizeC=3.fake 10:55:26 Tile at zct tile: 2 0 0 (5, 5, 100, 100) 10:55:26 [[ 0 0 0 ... 102 103 104] 10:55:26 [ 0 0 0 ... 102 103 104] 10:55:26 [ 0 0 0 ... 102 103 104] 10:55:26 ... 10:55:26 [ 5 6 7 ... 102 103 104] 10:55:26 [ 5 6 7 ... 102 103 104] 10:55:26 [ 5 6 7 ... 102 103 104]] 10:55:27 shape: (100, 100) 10:55:27 min: 0 max: 104 pixel type: uint8 10:55:27 Average : 53.9125 10:55:27 Getting data for T, tile: 0 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 1 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 2 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 3 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 4 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 5 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 6 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 7 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 8 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 9 (256, 0, 10, 512) 10:55:27 kymograph_data (512, 100) 10:55:27 Attaching kymograph.png to image 10:55:27 test&sizeT=10&sizeZ=5&sizeC=3.fake 10:55:27 Tile at zct tile: 2 0 0 (5, 5, 100, 100) 10:55:27 [[ 0 0 0 ... 102 103 104] 10:55:27 [ 0 0 0 ... 102 103 104] 10:55:27 [ 0 0 0 ... 102 103 104] 10:55:27 ... 10:55:27 [ 5 6 7 ... 102 103 104] 10:55:27 [ 5 6 7 ... 102 103 104] 10:55:27 [ 5 6 7 ... 102 103 104]] 10:55:27 shape: (100, 100) 10:55:27 min: 0 max: 104 pixel type: uint8 10:55:27 Average : 53.9125 10:55:27 Getting data for T, tile: 0 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 1 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 2 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 3 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 4 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 5 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 6 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 7 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 8 (256, 0, 10, 512) 10:55:27 Getting data for T, tile: 9 (256, 0, 10, 512) 10:55:27 kymograph_data (512, 100) 10:55:27 Attaching kymograph.png to image 10:55:27 No file downloaded. Project not rated. 10:55:27 New image, Id: 824 10:55:27 Starting at: http://nginx/web/api/ 10:55:27 CSRF token LTiLSVifRzqhdsw2t07no11X0XtSZuRK 10:55:27 Servers: 10:55:27 -id: 1 10:55:27 name: omero 10:55:27 host: omero 10:55:27 port: 4064 10:55:27 -id: 2 10:55:27 name: testintegration 10:55:27 host: testintegration 10:55:27 port: 14064 10:55:27 eventContext {'sessionId': 851, 'sessionUuid': '0cdb62ac-9c87-4c48-a419-8d84c177d42e', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []} 10:55:27 Projects: 10:55:27 2 Project 0 10:55:27 3 Project 0 10:55:27 Created Project: 312 API TEST foo 10:55:27 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 312, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/312/datasets/'}} 10:55:27 !! 01/05/26 10:55:27.429 error: communicator not destroyed during global destruction.+ deactivate 10:55:27 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 10:55:27 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:55:27 + export PATH 10:55:27 + unset _OLD_VIRTUAL_PATH 10:55:27 + '[' -n '' ']' 10:55:27 + hash -r 10:55:27 + '[' -n '' ']' 10:55:27 + unset VIRTUAL_ENV 10:55:27 + unset VIRTUAL_ENV_PROMPT 10:55:27 + '[' '!' '' = nondestructive ']' 10:55:27 + unset -f deactivate 10:55:27 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src 10:55:27 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java 10:55:28 Note: Some input files use unchecked or unsafe operations. 10:55:28 Note: Recompile with -Xlint:unchecked for details. 10:55:28 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup 10:55:29 Error: LinkageError occurred while loading main class training.Setup 10:55:29 java.lang.UnsupportedClassVersionError: training/Setup has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 55.0 10:55:29 Build step 'Execute shell' marked build as failure 10:55:29 Finished: FAILURE