Started by upstream project "Trigger" build number 20 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-zarr-pixel-buffer-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-zarr-pixel-buffer-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 3e9b9dafce22abae92d59ecc1cdb81161c16c2a7 (refs/remotes/origin/master) > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-zarr-pixel-buffer-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-zarr-pixel-buffer.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-zarr-pixel-buffer.git > git --version # timeout=10 > git --version # 'git version 2.52.0' > git fetch --tags --force --progress -- https://github.com/ome/omero-zarr-pixel-buffer.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 3e9b9dafce22abae92d59ecc1cdb81161c16c2a7 # timeout=10 Commit message: "Merge remote-tracking branch 'glencoe/master'" > git rev-list --no-walk 3e9b9dafce22abae92d59ecc1cdb81161c16c2a7 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 [Pipeline] pwd [Pipeline] sh + mkdir -p build + echo build [Pipeline] sh + pushd build ~/workspace/OMERO-zarr-pixel-buffer-push/build ~/workspace/OMERO-zarr-pixel-buffer-push + tar -zxf - + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + popd ~/workspace/OMERO-zarr-pixel-buffer-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.1.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.1.2 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.9.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.13.0-py3-none-any.whl.metadata (3.4 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-49.0.0-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.3 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.1.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB) Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.9.1-py3-none-any.whl (449 kB) Using cached pyjwt-2.13.0-py3-none-any.whl (31 kB) Using cached cryptography-49.0.0-cp311-abi3-manylinux_2_34_x86_64.whl (4.7 MB) Using cached cffi-2.1.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) Using cached idna-3.18-py3-none-any.whl (65 kB) Using cached certifi-2026.6.17-py3-none-any.whl (133 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.0-py3-none-any.whl (48 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.9.1 PyYAML-6.0.3 certifi-2026.6.17 cffi-2.1.0 charset_normalizer-3.4.9 cryptography-49.0.0 future-1.0.0 idna-3.18 pycparser-3.0 pyjwt-2.13.0 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-zarr-pixel-buffer.git + BASE_REPO=omero-zarr-pixel-buffer.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-07-18 01:09:55,052 [ scc.config] DEBUG Found github.token 2026-07-18 01:09:55,053 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-07-18 01:09:55,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-07-18 01:09:55,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-07-18 01:09:56,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-07-18 01:09:56,174 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 02:07 2026-07-18 01:09:56,175 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-07-18 01:09:56,184 [ scc.git] DEBUG Check current status 2026-07-18 01:09:56,184 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-07-18 01:09:56,203 [ scc.git] DEBUG 3e9b9da Merge remote-tracking branch 'glencoe/master' 2026-07-18 01:09:56,204 [ scc.git] DEBUG Calling 'git submodule status' 2026-07-18 01:09:56,306 [ scc.config] DEBUG Found remote.origin.url 2026-07-18 01:09:56,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer HTTP/1.1" 200 None 2026-07-18 01:09:57,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-07-18 01:09:57,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-07-18 01:09:58,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-07-18 01:09:58,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-07-18 01:09:58,749 [ scc.git] DEBUG Resetting... 2026-07-18 01:09:58,749 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-07-18 01:09:58,884 [ scc.git] DEBUG HEAD is now at 3e9b9da Merge remote-tracking branch 'glencoe/master' 2026-07-18 01:09:58,885 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-07-18 01:09:58,989 [ scc.git] DEBUG Check current status 2026-07-18 01:09:58,989 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-07-18 01:09:59,006 [ scc.git] DEBUG 3e9b9da Merge remote-tracking branch 'glencoe/master' 2026-07-18 01:09:59,007 [ scc.git] DEBUG Calling 'git submodule status' 2026-07-18 01:09:59,089 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-07-18 01:09:59,089 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-07-18 01:09:59,089 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-07-18 01:09:59,089 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-07-18 01:09:59,089 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-07-18 01:09:59,089 [ scc.repo] DEBUG ## PRs found: 2026-07-18 01:09:59,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/pulls HTTP/1.1" 200 None 2026-07-18 01:09:59,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/16 HTTP/1.1" 200 None 2026-07-18 01:09:59,906 [ scc.repo] DEBUG - PR 16 dominikl 'Zarr v3 support' 2026-07-18 01:09:59,906 [ scc.repo] DEBUG ## Branches found: 2026-07-18 01:09:59,906 [ scc.git] DEBUG Get sha1 of %s 2026-07-18 01:09:59,906 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-07-18 01:09:59,917 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-07-18 01:09:59,934 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-07-18 01:09:59,934 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-07-18 01:09:59,952 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-07-18 01:10:00,002 [ scc.git] DEBUG Already up to date. 2026-07-18 01:10:00,002 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-07-18 01:10:00,437 [ scc.git] DEBUG From https://github.com/ome/omero-zarr-pixel-buffer 2026-07-18 01:10:00,437 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-07-18 01:10:00,458 [ scc.git] DEBUG ## Unique users: [] 2026-07-18 01:10:00,458 [ scc.git] DEBUG Get sha1 of %s 2026-07-18 01:10:00,458 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-07-18 01:10:00,468 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a9aba3e336972d6e4ebb8d916d5eff71a3e7ed4c' 2026-07-18 01:10:00,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-07-18 01:10:00,498 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 16 (Zarr v3 support) a9aba3e336972d6e4ebb8d916d5eff71a3e7ed4c' 2026-07-18 01:10:00,769 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-07-18 01:10:00,847 [ scc.git] DEBUG .github/workflows/codeql.yml | 48 - 2026-07-18 01:10:00,848 [ scc.git] DEBUG build.gradle | 44 +- 2026-07-18 01:10:00,848 [ scc.git] DEBUG config/checkstyle/checkstyle.xml | 9 +- 2026-07-18 01:10:00,848 [ scc.git] DEBUG settings.gradle | 2 + 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../com/bc/zarr/storage/OmeroFileSystemStore.java | 78 -- 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../omero/zarr/OmeroAmazonS3ClientFactory.java | 138 --- 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../omero/zarr/OmeroS3FileSystem.java | 44 - 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../zarr/OmeroS3ReadOnlySeekableByteChannel.java | 194 ---- 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../java/com/glencoesoftware/omero/zarr/Utils.java | 88 ++ 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../com/glencoesoftware/omero/zarr/ZarrPath.java | 64 ++ 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../omero/zarr/ZarrPixelBuffer.java | 464 ++++----- 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../omero/zarr/ZarrPixelsService.java | 266 ++---- 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../com/glencoesoftware/omero/zarr/ZarrStore.java | 393 ++++++++ 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../s3fs/OmeroS3FilesystemProvider.java | 187 ---- 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../omero/zarr/ZarrPixelBufferTest.java | 1001 ++++---------------- 2026-07-18 01:10:00,848 [ scc.git] DEBUG .../omero/zarr/ZarrPixelsServiceTest.java | 45 +- 2026-07-18 01:10:00,848 [ scc.git] DEBUG 16 files changed, 1089 insertions(+), 1976 deletions(-) 2026-07-18 01:10:00,848 [ scc.git] DEBUG delete mode 100644 .github/workflows/codeql.yml 2026-07-18 01:10:00,848 [ scc.git] DEBUG create mode 100644 settings.gradle 2026-07-18 01:10:00,848 [ scc.git] DEBUG delete mode 100644 src/main/java/com/bc/zarr/storage/OmeroFileSystemStore.java 2026-07-18 01:10:00,848 [ scc.git] DEBUG delete mode 100644 src/main/java/com/glencoesoftware/omero/zarr/OmeroAmazonS3ClientFactory.java 2026-07-18 01:10:00,848 [ scc.git] DEBUG delete mode 100644 src/main/java/com/glencoesoftware/omero/zarr/OmeroS3FileSystem.java 2026-07-18 01:10:00,848 [ scc.git] DEBUG delete mode 100644 src/main/java/com/glencoesoftware/omero/zarr/OmeroS3ReadOnlySeekableByteChannel.java 2026-07-18 01:10:00,848 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/Utils.java 2026-07-18 01:10:00,848 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/ZarrPath.java 2026-07-18 01:10:00,848 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/ZarrStore.java 2026-07-18 01:10:00,848 [ scc.git] DEBUG delete mode 100644 src/main/java/com/upplication/s3fs/OmeroS3FilesystemProvider.java 2026-07-18 01:10:01,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-07-18 01:10:01,049 [ scc.git] DEBUG Calling 'git submodule update' 2026-07-18 01:10:01,144 [ scc.git] DEBUG Get sha1 of %s 2026-07-18 01:10:01,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-07-18 01:10:01,154 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-07-18 01:10:01,223 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faced035390> has no local changes 2026-07-18 01:10:01,223 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-zarr-pixel-buffer Already up to date. Merged PRs: - PR 16 dominikl 'Zarr v3 support' Generated by OMERO-zarr-pixel-buffer-push#11 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-zarr-pixel-buffer-push/11/)' 2026-07-18 01:10:01,347 [ scc.git] DEBUG [detached HEAD 9d8e641] merge master -Dorg -Snone 2026-07-18 01:10:01,348 [ scc.merge] INFO Repository: ome/omero-zarr-pixel-buffer 2026-07-18 01:10:01,348 [ scc.merge] INFO Already up to date. 2026-07-18 01:10:01,348 [ scc.merge] INFO 2026-07-18 01:10:01,348 [ scc.merge] INFO Merged PRs: 2026-07-18 01:10:01,348 [ scc.merge] INFO - PR 16 dominikl 'Zarr v3 support' 2026-07-18 01:10:01,349 [ scc.merge] INFO 2026-07-18 01:10:01,349 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-07-18 01:10:01,349 [ scc.git] DEBUG Calling 'git remote' Merge all submodules2026-07-18 01:10:02,425 [ scc.config] DEBUG Found github.token 2026-07-18 01:10:02,427 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-07-18 01:10:02,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-07-18 01:10:03,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-07-18 01:10:03,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-07-18 01:10:03,515 [ scc.gh] DEBUG 4999 remaining from 5000 (Reset at 02:07 2026-07-18 01:10:03,516 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-07-18 01:10:03,525 [ scc.git] DEBUG Check current status 2026-07-18 01:10:03,526 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-07-18 01:10:03,547 [ scc.git] DEBUG 9d8e641 merge master -Dorg -Snone 2026-07-18 01:10:03,548 [ scc.git] DEBUG Calling 'git submodule status' 2026-07-18 01:10:03,650 [ scc.config] DEBUG Found remote.origin.url 2026-07-18 01:10:04,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer HTTP/1.1" 200 None 2026-07-18 01:10:04,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-07-18 01:10:05,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-07-18 01:10:05,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-07-18 01:10:06,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-07-18 01:10:06,032 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-07-18 01:10:06,132 [ scc.git] DEBUG Resetting... 2026-07-18 01:10:06,132 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-07-18 01:10:06,242 [ scc.git] DEBUG HEAD is now at 9d8e641 merge master -Dorg -Snone 2026-07-18 01:10:06,244 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-07-18 01:10:06,348 [ scc.git] DEBUG Check current status 2026-07-18 01:10:06,348 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-07-18 01:10:06,368 [ scc.git] DEBUG 9d8e641 merge master -Dorg -Snone 2026-07-18 01:10:06,369 [ scc.git] DEBUG Calling 'git submodule status' 2026-07-18 01:10:06,464 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-07-18 01:10:06,464 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-07-18 01:10:06,464 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-07-18 01:10:06,464 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-07-18 01:10:06,464 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-07-18 01:10:06,464 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-07-18 01:10:06,464 [ scc.repo] DEBUG ## PRs found: 2026-07-18 01:10:06,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/pulls HTTP/1.1" 200 None 2026-07-18 01:10:07,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/16 HTTP/1.1" 200 None 2026-07-18 01:10:07,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/a9aba3e336972d6e4ebb8d916d5eff71a3e7ed4c?page=1 HTTP/1.1" 200 None 2026-07-18 01:10:08,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/a9aba3e336972d6e4ebb8d916d5eff71a3e7ed4c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-07-18 01:10:08,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/a9aba3e336972d6e4ebb8d916d5eff71a3e7ed4c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-07-18 01:10:09,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/a9aba3e336972d6e4ebb8d916d5eff71a3e7ed4c?page=1 HTTP/1.1" 200 None 2026-07-18 01:10:09,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/statuses/a9aba3e336972d6e4ebb8d916d5eff71a3e7ed4c?per_page=1 HTTP/1.1" 200 2 2026-07-18 01:10:09,975 [ scc.repo] DEBUG - PR 16 dominikl 'Zarr v3 support' 2026-07-18 01:10:09,975 [ scc.repo] DEBUG ## Branches found: 2026-07-18 01:10:09,975 [ scc.git] DEBUG Get sha1 of %s 2026-07-18 01:10:09,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-07-18 01:10:09,988 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-07-18 01:10:10,008 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-07-18 01:10:10,008 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-07-18 01:10:10,031 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-07-18 01:10:10,089 [ scc.git] DEBUG Already up to date. 2026-07-18 01:10:10,089 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-07-18 01:10:10,511 [ scc.git] DEBUG From https://github.com/ome/omero-zarr-pixel-buffer 2026-07-18 01:10:10,511 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-07-18 01:10:10,539 [ scc.git] DEBUG ## Unique users: [] 2026-07-18 01:10:10,539 [ scc.git] DEBUG Get sha1 of %s 2026-07-18 01:10:10,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-07-18 01:10:10,557 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a9aba3e336972d6e4ebb8d916d5eff71a3e7ed4c' 2026-07-18 01:10:10,601 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-07-18 01:10:10,609 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Zarr v3 support) a9aba3e336972d6e4ebb8d916d5eff71a3e7ed4c' 2026-07-18 01:10:10,658 [ scc.git] DEBUG Already up to date. 2026-07-18 01:10:10,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-07-18 01:10:10,845 [ scc.git] DEBUG Calling 'git submodule update' 2026-07-18 01:10:10,950 [ scc.git] DEBUG Get sha1 of %s 2026-07-18 01:10:10,950 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-07-18 01:10:10,960 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-07-18 01:10:11,057 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-07-18 01:10:11,111 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe66ff62650> has no local changes 2026-07-18 01:10:11,111 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-zarr-pixel-buffer Already up to date. Merged PRs: - PR 16 dominikl 'Zarr v3 support' Generated by OMERO-zarr-pixel-buffer-push#11 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-zarr-pixel-buffer-push/11/)' 2026-07-18 01:10:11,243 [ scc.git] DEBUG [detached HEAD 7c095f6] merge master -Dorg -Ssuccess-only 2026-07-18 01:10:11,245 [ scc.merge] INFO Repository: ome/omero-zarr-pixel-buffer 2026-07-18 01:10:11,245 [ scc.merge] INFO Already up to date. 2026-07-18 01:10:11,245 [ scc.merge] INFO 2026-07-18 01:10:11,245 [ scc.merge] INFO Merged PRs: 2026-07-18 01:10:11,245 [ scc.merge] INFO - PR 16 dominikl 'Zarr v3 support' 2026-07-18 01:10:11,245 [ scc.merge] INFO 2026-07-18 01:10:11,245 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-07-18 01:10:11,245 [ scc.git] DEBUG Calling 'git remote' Update component versions Commit all component version changes HEAD detached from 3e9b9da nothing to commit, working tree clean 2026-07-18 01:10:19,034 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-zarr-pixel-buffer/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS