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--comment21654fab96d71411fab33e55b79057bcbf94eef8a2654fab96d71411fab33e55b79057bcbf94eef8a2master654fab96d71411fab33e55b79057bcbf94eef8a2654fab96d71411fab33e55b79057bcbf94eef8a2master654fab96d71411fab33e55b79057bcbf94eef8a2654fab96d71411fab33e55b79057bcbf94eef8a2masterhttps://github.com/ome/jenkins-library-recursivemerge.git2145627b5ed61cb6f2ab7407b95263122f0667460945627b5ed61cb6f2ab7407b95263122f06674609refs/remotes/origin/master45627b5ed61cb6f2ab7407b95263122f0667460945627b5ed61cb6f2ab7407b95263122f06674609refs/remotes/origin/master45627b5ed61cb6f2ab7407b95263122f0667460945627b5ed61cb6f2ab7407b95263122f06674609refs/remotes/origin/masterhttps://github.com/ome/omero-zarr-pixel-buffer.gitversion.tsvversion.tsvbuild/version.tsvfalse#21108302108975OMERO-zarr-pixel-buffer-push #2121false21558SUCCESS1785248143821https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-zarr-pixel-buffer-push/21/src/main/java/com/upplication/s3fs/OmeroS3FilesystemProvider.javasrc/main/java/com/glencoesoftware/omero/zarr/OmeroS3ReadOnlySeekableByteChannel.javasrc/main/java/com/glencoesoftware/omero/zarr/OmeroS3FileSystem.javabuild.gradlesrc/main/java/com/bc/zarr/storage/OmeroFileSystemStore.javasrc/main/java/com/glencoesoftware/omero/zarr/OmeroAmazonS3ClientFactory.javasrc/main/java/org/carlspring/cloud/storage/s3fs/OmeroS3FilesystemProvider.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.java337c9e5e9328e6253375048ed3421f3fa2b9b5db1778670710000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukBump dependencies 2026-05-13 12:11:50 +0100337c9e5e9328e6253375048ed3421f3fa2b9b5dbBump dependenciesdeletesrc/main/java/com/upplication/s3fs/OmeroS3FilesystemProvider.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/OmeroS3ReadOnlySeekableByteChannel.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/OmeroAmazonS3ClientFactory.javaeditsrc/main/java/com/bc/zarr/storage/OmeroFileSystemStore.javaeditbuild.gradleeditsrc/main/java/com/glencoesoftware/omero/zarr/OmeroS3FileSystem.javaaddsrc/main/java/org/carlspring/cloud/storage/s3fs/OmeroS3FilesystemProvider.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/main/java/com/glencoesoftware/omero/zarr/OmeroS3ReadOnlySeekableByteChannel.javasrc/main/java/com/glencoesoftware/omero/zarr/OmeroS3FileSystem.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPath.javabuild.gradlesrc/main/java/com/bc/zarr/storage/OmeroFileSystemStore.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javasrc/main/java/org/carlspring/cloud/storage/s3fs/OmeroS3FilesystemProvider.javasrc/main/java/com/glencoesoftware/omero/zarr/OmeroAmazonS3ClientFactory.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.java17caebcaf433bf59ed3b2f8d7b91df1c146c5ac41778670723000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukDrop jzarr, only use zarr-java (v2/v3) 2026-05-13 12:12:03 +010017caebcaf433bf59ed3b2f8d7b91df1c146c5ac4Drop jzarr, only use zarr-java (v2/v3)addsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPath.javadeletesrc/main/java/com/bc/zarr/storage/OmeroFileSystemStore.javadeletesrc/main/java/org/carlspring/cloud/storage/s3fs/OmeroS3FilesystemProvider.javadeletesrc/main/java/com/glencoesoftware/omero/zarr/OmeroAmazonS3ClientFactory.javadeletesrc/main/java/com/glencoesoftware/omero/zarr/OmeroS3ReadOnlySeekableByteChannel.javaaddsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javaeditbuild.gradleeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javadeletesrc/main/java/com/glencoesoftware/omero/zarr/OmeroS3FileSystem.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.java92279a4cbcc1ce5eff9705812b0a2ba36f609d7b1778670748000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukFix formatting 2026-05-13 12:12:28 +010092279a4cbcc1ce5eff9705812b0a2ba36f609d7bFix formattingeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javasrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelsServiceTest.javasrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java57347d74e0f4d5f76fe380f5d859cce57b3433991778670861000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukAdd tests again 2026-05-13 12:14:21 +010057347d74e0f4d5f76fe380f5d859cce57b343399Add tests againeditsrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelsServiceTest.javaeditsrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javacd2cb5f43357d87d09823ae1869768c465ba05bd1778670880000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukCheck for ome key in attributes 2026-05-13 12:14:40 +0100cd2cb5f43357d87d09823ae1869768c465ba05bdCheck for ome key in attributeseditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javasrc/main/java/com/glencoesoftware/omero/zarr/Utils.java146db8a4763e51bb999d384247f6c46a80a9c1591778670930000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukFix unsafe cast warnings 2026-05-13 12:15:30 +0100146db8a4763e51bb999d384247f6c46a80a9c159Fix unsafe cast warningsaddsrc/main/java/com/glencoesoftware/omero/zarr/Utils.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.java76411f81c48606142d3ca90ebf1923679fd35cf51778671512000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukAdd more info logging 2026-05-13 12:25:12 +010076411f81c48606142d3ca90ebf1923679fd35cf5Add more info loggingeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javasrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java813c6fa901295030ecf5130baf3fdd018cd1ac2b1778671660000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukadd tests 2026-05-13 12:27:40 +0100813c6fa901295030ecf5130baf3fdd018cd1ac2badd testseditsrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javaf32b39335f6461e12b50bc73e731e22a855e48ec1778672804000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukUse UrlConnectionHttpClient instead of apache 2026-05-13 12:46:44 +0100f32b39335f6461e12b50bc73e731e22a855e48ecUse UrlConnectionHttpClient instead of apacheeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java619866b2b20298297b946a098f15cd0c118b64541778672883000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukfix/add more tests 2026-05-13 12:48:03 +0100619866b2b20298297b946a098f15cd0c118b6454fix/add more testseditsrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.javasrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java2589080b2df749e02b1cbf94a7a0e13dc0877bf51778672960000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukAdd anon s3 test 2026-05-13 12:49:20 +01002589080b2df749e02b1cbf94a7a0e13dc0877bf5Add anon s3 testeditsrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java2c10fc985f7a5643218d0c1a0dd17efb6b49bf621778673435000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukupdate zarrjava to 0.1.0 2026-05-13 12:57:15 +01002c10fc985f7a5643218d0c1a0dd17efb6b49bf62update zarrjava to 0.1.0editsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.javaconfig/checkstyle/checkstyle.xml05882a7ecfe1a1d34dc7e075899598b091aecd4c1778674297000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukrelax checkstyle.xml a bit 2026-05-13 13:11:37 +010005882a7ecfe1a1d34dc7e075899598b091aecd4crelax checkstyle.xml a biteditconfig/checkstyle/checkstyle.xmlbuild.gradledd86948733e529907eaee771b104f925a5bcf66c1778675564000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukadd deps to build.gradle 2026-05-13 13:32:44 +0100dd86948733e529907eaee771b104f925a5bcf66cadd deps to build.gradleeditbuild.gradle.github/workflows/codeql.yml74f135660a6162847277f04464d56b41845a1f581778676927000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukRemove codeql 2026-05-13 13:55:27 +010074f135660a6162847277f04464d56b41845a1f58Remove codeqldelete.github/workflows/codeql.ymlsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javaee383a347382bbc6428f5faebcc3744383d144ab1778767958000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukfix entityID check 2026-05-14 15:12:38 +0100ee383a347382bbc6428f5faebcc3744383d144abfix entityID checkeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.java03ac9b273cda3563c00a2cc17f154915470f4d3a1778866909000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comDo not create a URI from the zarr path 2026-05-15 13:41:49 -040003ac9b273cda3563c00a2cc17f154915470f4d3aDo not create a URI from the zarr patheditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.java05bbbd57b968c8e89df60c407cb65a40e87f74f01778873407000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comManually get query parameters 2026-05-15 15:30:07 -040005bbbd57b968c8e89df60c407cb65a40e87f74f0Manually get query parameterseditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasettings.gradlea44065df2be46f1173d6339088aed19fdc5742c31779375089000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukadd settings.gradle 2026-05-21 15:51:29 +0100a44065df2be46f1173d6339088aed19fdc5742c3add settings.gradleaddsettings.gradlebuild.gradle7a69fd6818dd08bc35d55b88ca29d044ce0d416d1779458329000https://merge-ci.openmicroscopy.org/jenkins/user/d.lindnerd.lindnerd.lindner@dundee.ac.ukbump version to 0.7.1-SNAPSHOT to distingush from glencoesofware build 2026-05-22 14:58:49 +01007a69fd6818dd08bc35d55b88ca29d044ce0d416dbump version to 0.7.1-SNAPSHOT to distingush from glencoesofware buildeditbuild.gradlesrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelsServiceTest.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javaed145cd88cab1e2f7d90d20d5a43783d51958c561779974452000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comUpdate PixelsService to handle old and new entity IDs 2026-05-28 09:20:52 -0400ed145cd88cab1e2f7d90d20d5a43783d51958c56Update PixelsService to handle old and new entity IDseditsrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelsServiceTest.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javabuild.gradle2246d83c802d511f37539d0a92b2a1e95db65c3e1780596158000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comCleanup build.gradle changes 2026-06-04 14:02:38 -04002246d83c802d511f37539d0a92b2a1e95db65c3eCleanup build.gradle changeseditbuild.gradle.github/workflows/codeql.yml22837b95502d4d1657181ff5bc6cf4bf5aab08431780596260000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comAdd codeql back 2026-06-04 14:04:20 -040022837b95502d4d1657181ff5bc6cf4bf5aab0843Add codeql backadd.github/workflows/codeql.ymlsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javaconfig/checkstyle/checkstyle.xmle01c23c7c5d0279958d38919ca150b43955d5d731780596856000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comRever checkstyle and fix resulting issues 2026-06-04 14:14:16 -0400e01c23c7c5d0279958d38919ca150b43955d5d73Rever checkstyle and fix resulting issueseditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javaeditconfig/checkstyle/checkstyle.xmlsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/main/java/com/glencoesoftware/omero/zarr/Utils.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPath.javaa34a85fb6c801b02c390548e738b93e3a06fdf171780597746000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comAdd copyrights 2026-06-04 14:29:06 -0400a34a85fb6c801b02c390548e738b93e3a06fdf17Add copyrightseditsrc/main/java/com/glencoesoftware/omero/zarr/Utils.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPath.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javabuild.gradle48a25968c5370395038a3f9e820dcf833d5daf261780599414000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comRevert compileJava section of build.gradle 2026-06-04 14:56:54 -040048a25968c5370395038a3f9e820dcf833d5daf26Revert compileJava section of build.gradleeditbuild.gradlebuild.gradle0d874f92565c47a1e1a1c83f38c465de0715ad7f1780663798000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comAdd newline at end of build.gradle 2026-06-05 08:49:58 -04000d874f92565c47a1e1a1c83f38c465de0715ad7fAdd newline at end of build.gradleeditbuild.gradlesrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javabuild.gradleec9971edf041f8f9b18e9c47cf50205c238570491780668222000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comMake small changes as per review 2026-06-05 10:03:42 -0400ec9971edf041f8f9b18e9c47cf50205c23857049Make small changes as per revieweditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javaeditbuild.gradlebuild.gradle8e06bc4dd94f7a0fec839076a9a280f251e71c041780682503000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comUse explicit version numbers 2026-06-05 14:01:43 -04008e06bc4dd94f7a0fec839076a9a280f251e71c04Use explicit version numberseditbuild.gradlesrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javac61f154d77d3ffd85e66466d3c069a9673b334041780685780000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comCreate ZarrStore in try block, add Instance Creds support, remove static cred support 2026-06-05 14:56:20 -0400c61f154d77d3ffd85e66466d3c069a9673b33404Create ZarrStore in try block, add Instance Creds support, remove static cred supporteditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javaeditsrc/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.javaeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrPixelsService.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javafbfa684bb8e3056c1b3172f644801e435a91c9481780686617000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comcheckstyle 2026-06-05 15:10:17 -0400fbfa684bb8e3056c1b3172f644801e435a91c948checkstyleeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.java69a0254e3e5a19c315ccfc832602d490e27664f81781032814000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comUse provider chain to allow for default profile 2026-06-09 15:20:14 -040069a0254e3e5a19c315ccfc832602d490e27664f8Use provider chain to allow for default profileeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javabuild.gradlebab417be0360428a9eeb7bb3afa830daaebe8e441781121355000https://merge-ci.openmicroscopy.org/jenkins/user/sbessonsbessonsbesson@glencoesoftware.comBump version to 0.7.0-rc1 2026-06-10 21:55:55 +0200bab417be0360428a9eeb7bb3afa830daaebe8e44Bump version to 0.7.0-rc1editbuild.gradlebuild.gradlee195bc0db6acf1cf9ed8420b960a80a850f7b1291781121406000https://merge-ci.openmicroscopy.org/jenkins/user/sbessonsbessonsbesson@glencoesoftware.comBump version to 0.7.0-SNAPSHOT 2026-06-10 21:56:46 +0200e195bc0db6acf1cf9ed8420b960a80a850f7b129Bump version to 0.7.0-SNAPSHOTeditbuild.gradlesrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.java8dd8031d7a0a37cbc3cc954ff997570745ef50fa1782762099000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comHandle ? properly 2026-06-29 15:41:39 -04008dd8031d7a0a37cbc3cc954ff997570745ef50faHandle ? properlyeditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.java7ff7d89bf09791e5a0fd043de0fb73adf18c49661783022620000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comRemove query string pattern from final section of path 2026-07-02 16:03:40 -04007ff7d89bf09791e5a0fd043de0fb73adf18c4966Remove query string pattern from final section of patheditsrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/main/java/com/glencoesoftware/omero/zarr/ZarrStore.javasrc/test/java/com/glencoesoftware/omero/zarr/ZarrStoreTest.javaa0b29c0172883eb315060e297339d1b3374d0e431784043959000https://merge-ci.openmicroscopy.org/jenkins/user/kevinkevinkevin@glencoesoftware.comRefactor regex work and add unit tests 2026-07-14 11:45:59 -0400a0b29c0172883eb315060e297339d1b3374d0e43Refactor regex work and add unit 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