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#14 383.1 Downloaded from central: https://repo.maven.apache.org/maven2/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final.jar (64 kB at 308 kB/s)
#14 383.1 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.1/jackson-core-2.3.1.jar
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#14 383.1 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar
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#14 383.1 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jaxrs/jackson-jaxrs-json-provider/2.3.1/jackson-jaxrs-json-provider-2.3.1.jar
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#14 383.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.3.5/httpclient-4.3.5.jar
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#14 383.2 Progress (3): 654/914 kB | 32 kB | 74/591 kB
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#14 383.2 Progress (2): 719/914 kB | 131/591 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar (914 kB at 3.2 MB/s)
#14 383.2 Progress (4): 414/591 kB | 233/282 kB | 17 kB | 74/121 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar
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#14 383.2 Progress (3): 475/591 kB | 279/282 kB | 121 kB
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#14 383.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.8/plexus-utils-3.0.8.jar
#14 383.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar (282 kB at 919 kB/s)
#14 383.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.jar
#14 383.2 Progress (3): 591 kB | 27 kB | 4.1/50 kB
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#14 383.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/aether/aether-api/1.13.1/aether-api-1.13.1.jar
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#14 383.2 Progress (3): 232 kB | 90 kB | 114/428 kB
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#14 383.2 Progress (3): 232 kB | 212/428 kB | 61/271 kB
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#14 383.3 Downloaded from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar (271 kB at 742 kB/s)
#14 383.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.pom
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#14 383.5 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.pom
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#14 383.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.pom
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#14 383.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.pom
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#14 383.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.7/maven-2.0.7.pom
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#14 383.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-parent/5/maven-parent-5.pom
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#14 383.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.pom
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#14 383.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.pom
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#14 383.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.pom
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#14 383.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.pom
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#14 383.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting/2.0.7/maven-reporting-2.0.7.pom
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#14 383.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/1.0-alpha-7/doxia-sink-api-1.0-alpha-7.pom
#14 383.8 Progress (1): 424 B
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#14 385.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.jar
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#14 385.1 [output clipped, log limit 2MiB reached]
#14 480.7 SLF4J: No SLF4J providers were found.
#14 480.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 480.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 491.3s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.4s
#16 [12/13] RUN ant jars tools
#16 0.964 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.583 [echo] isSnapshot = true
#16 1.692
#16 1.692 copy-jars:
#16 1.693
#16 1.693 deps-formats-api:
#16 1.810 [echo] isSnapshot = true
#16 1.865
#16 1.865 install-pom:
#16 2.047 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.084 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.088 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.090
#16 2.090 jar-formats-api:
#16 2.202 [echo] isSnapshot = true
#16 2.383
#16 2.383 init-title:
#16 2.384 [echo] ----------=========== formats-api ===========----------
#16 2.384
#16 2.384 init-timestamp:
#16 2.389
#16 2.389 init:
#16 2.389
#16 2.389 copy-resources:
#16 2.390 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.404 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.417
#16 2.417 compile:
#16 2.722 [resolver:resolve] Resolving artifacts
#16 2.749 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.094 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.795 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.795 [javac] import loci.common.ReflectedUniverse;
#16 3.795 [javac] ^
#16 3.995 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.995 [javac] int currentIndex = r.getCoreIndex();
#16 3.995 [javac] ^
#16 3.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.996 [javac] r.setCoreIndex(coreIndex);
#16 3.996 [javac] ^
#16 3.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.996 [javac] r.setCoreIndex(currentIndex);
#16 3.996 [javac] ^
#16 4.197 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.197 [javac] public void setCoreIndex(int no) {
#16 4.197 [javac] ^
#16 4.197 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.197 [javac] public int getCoreIndex() {
#16 4.197 [javac] ^
#16 4.197 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.197 [javac] public int coreIndexToSeries(int index)
#16 4.197 [javac] ^
#16 4.197 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.197 [javac] public int seriesToCoreIndex(int series)
#16 4.197 [javac] ^
#16 4.197 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.197 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.198 [javac] ^
#16 4.198 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.198 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.198 [javac] ^
#16 4.198 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.198 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.198 [javac] ^
#16 4.198 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.198 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.198 [javac] ^
#16 4.198 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.198 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.198 [javac] ^
#16 4.299 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.299 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.299 [javac] ^
#16 4.299 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.299 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.299 [javac] ^
#16 4.399 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.399 [javac] public void setCoreIndex(int no) {
#16 4.399 [javac] ^
#16 4.399 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.399 [javac] public int getCoreIndex() {
#16 4.399 [javac] ^
#16 4.400 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.400 [javac] public int coreIndexToSeries(int index) {
#16 4.400 [javac] ^
#16 4.400 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.400 [javac] public int seriesToCoreIndex(int series) {
#16 4.400 [javac] ^
#16 4.400 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.400 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.400 [javac] ^
#16 4.400 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.400 [javac] return getReader().getCoreMetadataList();
#16 4.400 [javac] ^
#16 4.400 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.400 [javac] return getReader().getCoreIndex();
#16 4.400 [javac] ^
#16 4.400 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.400 [javac] getReader().setCoreIndex(no);
#16 4.400 [javac] ^
#16 4.400 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.400 [javac] return getReader().seriesToCoreIndex(series);
#16 4.400 [javac] ^
#16 4.401 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.401 [javac] return getReader().coreIndexToSeries(index);
#16 4.401 [javac] ^
#16 4.501 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.501 [javac] public void setCoreIndex(int no) {
#16 4.501 [javac] ^
#16 4.501 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.501 [javac] public int getCoreIndex() {
#16 4.501 [javac] ^
#16 4.501 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.501 [javac] public int coreIndexToSeries(int index) {
#16 4.501 [javac] ^
#16 4.501 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.501 [javac] public int seriesToCoreIndex(int series) {
#16 4.501 [javac] ^
#16 4.501 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.501 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.501 [javac] ^
#16 4.502 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.502 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.502 [javac] ^
#16 4.502 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.502 [javac] return reader.getCoreIndex();
#16 4.502 [javac] ^
#16 4.502 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.502 [javac] reader.setCoreIndex(no);
#16 4.502 [javac] ^
#16 4.502 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.502 [javac] return reader.seriesToCoreIndex(series);
#16 4.502 [javac] ^
#16 4.502 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.502 [javac] return reader.coreIndexToSeries(index);
#16 4.502 [javac] ^
#16 4.688 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.688 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.688 [javac] 36 warnings
#16 4.689
#16 4.689 formats-api.jar:
#16 4.689 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.712 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.743 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 4.746 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 4.758 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 4.759 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.761 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.762
#16 4.762 deps-turbojpeg:
#16 4.762
#16 4.762 jar-turbojpeg:
#16 4.862 [echo] isSnapshot = true
#16 5.028
#16 5.028 init-title:
#16 5.028 [echo] ----------=========== turbojpeg ===========----------
#16 5.028
#16 5.028 init-timestamp:
#16 5.028
#16 5.028 init:
#16 5.029
#16 5.029 copy-resources:
#16 5.029 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.030
#16 5.030 compile:
#16 5.040 [resolver:resolve] Resolving artifacts
#16 5.043 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.246 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.846 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.846 [javac] protected void finalize() throws Throwable {
#16 5.846 [javac] ^
#16 5.846 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.846 [javac] super.finalize();
#16 5.846 [javac] ^
#16 5.846 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.846 [javac] protected void finalize() throws Throwable {
#16 5.846 [javac] ^
#16 5.846 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.846 [javac] super.finalize();
#16 5.846 [javac] ^
#16 5.907 [javac] 5 warnings
#16 5.908
#16 5.908 jar:
#16 5.913 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.097 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.105 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.116 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.118 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.121 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.122
#16 6.122 deps-formats-bsd:
#16 6.122
#16 6.122 jar-formats-bsd:
#16 6.221 [echo] isSnapshot = true
#16 6.371
#16 6.371 init-title:
#16 6.371 [echo] ----------=========== formats-bsd ===========----------
#16 6.371
#16 6.371 init-timestamp:
#16 6.371
#16 6.371 init:
#16 6.371
#16 6.371 copy-resources:
#16 6.372 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.374 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.376
#16 6.376 compile:
#16 6.584 [resolver:resolve] Resolving artifacts
#16 6.611 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.921 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.922 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.922 [javac] import loci.common.ReflectedUniverse;
#16 7.922 [javac] ^
#16 8.222 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.222 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.223 [javac] ^
#16 8.223 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.223 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.223 [javac] ^
#16 8.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.323 [javac] int n = reader.getCoreMetadataList().size();
#16 8.323 [javac] ^
#16 8.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.323 [javac] reader.setCoreIndex(coreIndex);
#16 8.323 [javac] ^
#16 8.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.323 [javac] int n = reader.getCoreMetadataList().size();
#16 8.323 [javac] ^
#16 8.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.323 [javac] int n = reader.getCoreMetadataList().size();
#16 8.323 [javac] ^
#16 8.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.323 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.323 [javac] ^
#16 8.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.323 [javac] int n = reader.getCoreMetadataList().size();
#16 8.323 [javac] ^
#16 8.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.323 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.323 [javac] ^
#16 8.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.323 [javac] int n = reader.getCoreMetadataList().size();
#16 8.323 [javac] ^
#16 8.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.324 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.324 [javac] ^
#16 8.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.324 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.324 [javac] ^
#16 8.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.324 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.324 [javac] ^
#16 8.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.324 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.324 [javac] ^
#16 8.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.324 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.324 [javac] ^
#16 8.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.324 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.324 [javac] ^
#16 8.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.324 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.324 [javac] ^
#16 8.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.324 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.324 [javac] ^
#16 8.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.324 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.324 [javac] ^
#16 8.424 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.424 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.424 [javac] ^
#16 8.625 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.625 [javac] BitWriter out = new BitWriter();
#16 8.625 [javac] ^
#16 8.625 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.625 [javac] BitWriter out = new BitWriter();
#16 8.625 [javac] ^
#16 8.725 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.725 [javac] return new Double(v);
#16 8.725 [javac] ^
#16 9.326 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1872: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.326 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.326 [javac] ^
#16 9.326 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1879: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.326 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.326 [javac] ^
#16 9.326 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1886: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.326 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.326 [javac] ^
#16 9.426 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 9.426 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.426 [javac] ^
#16 9.627 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.627 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.627 [javac] ^
#16 9.727 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.727 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.727 [javac] ^
#16 9.827 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.827 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.827 [javac] ^
#16 9.827 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.827 [javac] protected ReflectedUniverse r;
#16 9.827 [javac] ^
#16 9.827 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.827 [javac] r = new ReflectedUniverse();
#16 9.827 [javac] ^
#16 9.828 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 9.828 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.828 [javac] ^
#16 9.828 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 9.828 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.828 [javac] ^
#16 9.828 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 9.828 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.828 [javac] ^
#16 9.828 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 9.828 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.828 [javac] ^
#16 9.828 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 9.828 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.828 [javac] ^
#16 9.828 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 9.828 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.828 [javac] ^
#16 9.828 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 9.829 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.829 [javac] ^
#16 9.829 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 9.829 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.829 [javac] ^
#16 9.829 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.829 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.829 [javac] ^
#16 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.03 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.03 [javac] ^
#16 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.03 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.03 [javac] ^
#16 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.03 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.03 [javac] ^
#16 10.03 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.03 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.03 [javac] 46 warnings
#16 10.05
#16 10.05 formats-bsd.jar:
#16 10.05 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.17 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.17 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.21 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.21 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.22
#16 10.22 deps-formats-gpl:
#16 10.22
#16 10.22 jar-formats-gpl:
#16 10.32 [echo] isSnapshot = true
#16 10.47
#16 10.47 init-title:
#16 10.47 [echo] ----------=========== formats-gpl ===========----------
#16 10.47
#16 10.47 init-timestamp:
#16 10.47
#16 10.47 init:
#16 10.47
#16 10.47 copy-resources:
#16 10.47 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.47 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.47
#16 10.47 compile:
#16 10.92 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.23 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.28 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.72 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 11.74 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.76 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.78 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.92 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.02 [resolver:resolve] Resolving artifacts
#16 12.04 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.04 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.09 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.09 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.12 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.12 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.54 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.55 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.57 [javac] Compiling 215 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.88 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 13.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.98 [javac] import loci.formats.codec.BitWriter;
#16 13.98 [javac] ^
#16 14.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.08 [javac] import loci.formats.codec.BitWriter;
#16 14.08 [javac] ^
#16 15.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LIFDelegateReader.java:45: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.68 [javac] core = new ArrayList<CoreMetadata>(reader.getCoreMetadataList());
#16 15.68 [javac] ^
#16 16.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.08 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.08 [javac] ^
#16 16.08 [javac] cast to Object for a varargs call
#16 16.08 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 16.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.18 [javac] BitWriter bits = null;
#16 16.18 [javac] ^
#16 16.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.18 [javac] bits = new BitWriter(planes[index].length / 8);
#16 16.18 [javac] ^
#16 16.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.48 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.48 [javac] ^
#16 16.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.78 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.78 [javac] ^
#16 16.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.78 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.78 [javac] ^
#16 17.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.08 [javac] List<Attribute> attributes = variable.getAttributes();
#16 17.08 [javac] ^
#16 17.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.08 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 17.08 [javac] ^
#16 17.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.08 [javac] String groupName = group.getName();
#16 17.08 [javac] ^
#16 17.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.08 [javac] List<Attribute> attributes = group.getAttributes();
#16 17.08 [javac] ^
#16 17.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.08 [javac] String attributeName = attribute.getName();
#16 17.08 [javac] ^
#16 17.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.08 [javac] String variableName = variable.getName();
#16 17.08 [javac] ^
#16 17.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 17.08 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 17.08 [javac] ^
#16 17.08 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.08 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.08 [javac] 17 warnings
#16 17.12
#16 17.12 formats-gpl.jar:
#16 17.13 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.27 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 17.27 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 17.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 17.31 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.31 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.31
#16 17.31 deps-bio-formats-plugins:
#16 17.31
#16 17.31 jar-bio-formats-plugins:
#16 17.40 [echo] isSnapshot = true
#16 17.55
#16 17.55 init-title:
#16 17.55 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.55
#16 17.55 init-timestamp:
#16 17.55
#16 17.55 init:
#16 17.55
#16 17.55 copy-resources:
#16 17.56 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.56 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.56
#16 17.56 compile:
#16 17.80 [resolver:resolve] Resolving artifacts
#16 17.82 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.13 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 18.93 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.93 [javac] import loci.common.ReflectedUniverse;
#16 18.93 [javac] ^
#16 18.93 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.93 [javac] import loci.common.ReflectedUniverse;
#16 18.93 [javac] ^
#16 19.43 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.43 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.43 [javac] ^
#16 19.53 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.53 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.53 [javac] ^
#16 19.53 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.53 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.53 [javac] ^
#16 19.63 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.63 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.63 [javac] ^
#16 19.63 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.63 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.63 [javac] ^
#16 20.03 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.03 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.03 [javac] 8 warnings
#16 20.03
#16 20.03 bio-formats-plugins.jar:
#16 20.04 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.07 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 20.07 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 20.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 20.08 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.08 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.08
#16 20.08 deps-bio-formats-tools:
#16 20.08
#16 20.08 jar-bio-formats-tools:
#16 20.17 [echo] isSnapshot = true
#16 20.31
#16 20.31 init-title:
#16 20.31 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.31
#16 20.31 init-timestamp:
#16 20.31
#16 20.31 init:
#16 20.31
#16 20.31 copy-resources:
#16 20.32 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.32
#16 20.32 compile:
#16 20.56 [resolver:resolve] Resolving artifacts
#16 20.57 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.88 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 21.82 [javac] 1 warning
#16 21.82
#16 21.82 bio-formats-tools.jar:
#16 21.83 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 21.83 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 21.84 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 21.84 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 21.84 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 21.84 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 21.85
#16 21.85 deps-tests:
#16 21.85
#16 21.85 jar-tests:
#16 21.94 [echo] isSnapshot = true
#16 22.09
#16 22.09 init-title:
#16 22.09 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.09
#16 22.09 init-timestamp:
#16 22.09
#16 22.09 init:
#16 22.09
#16 22.09 copy-resources:
#16 22.09 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.09
#16 22.09 compile:
#16 22.39 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.47 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.49 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.90 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.33 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 23.35 [resolver:resolve] Resolving artifacts
#16 23.36 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.40 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.42 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.83 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.21 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.22 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.52 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 25.42 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.42 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.42 [javac] ^
#16 25.42 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.42 [javac] reader.setCoreIndex(index);
#16 25.42 [javac] ^
#16 25.62 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.62 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.62 [javac] ^
#16 25.62 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.62 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.62 [javac] ^
#16 25.92 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.92 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 25.92 [javac] ^
#16 25.92 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.92 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 25.92 [javac] ^
#16 25.92 [javac] Note: Some input files use unchecked or unsafe operations.
#16 25.92 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 25.92 [javac] 7 warnings
#16 25.94
#16 25.94 tests.jar:
#16 25.94 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 25.95 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 25.96 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 25.96 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 25.96 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.96 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 25.96
#16 25.96 jars:
#16 25.96
#16 25.96 copy-jars:
#16 25.96
#16 25.96 deps-formats-api:
#16 26.01 [echo] isSnapshot = true
#16 26.06
#16 26.06 install-pom:
#16 26.20 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 26.20 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.20 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.20
#16 26.20 jar-formats-api:
#16 26.29 [echo] isSnapshot = true
#16 26.47
#16 26.47 init-title:
#16 26.47 [echo] ----------=========== formats-api ===========----------
#16 26.47
#16 26.47 init-timestamp:
#16 26.47
#16 26.47 init:
#16 26.47
#16 26.47 copy-resources:
#16 26.48
#16 26.48 compile:
#16 26.61 [resolver:resolve] Resolving artifacts
#16 26.62
#16 26.62 formats-api.jar:
#16 26.64 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 26.64 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 26.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 26.65 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.65 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 26.65
#16 26.65 deps-turbojpeg:
#16 26.65
#16 26.65 jar-turbojpeg:
#16 26.74 [echo] isSnapshot = true
#16 26.88
#16 26.88 init-title:
#16 26.88 [echo] ----------=========== turbojpeg ===========----------
#16 26.88
#16 26.88 init-timestamp:
#16 26.88
#16 26.88 init:
#16 26.88
#16 26.88 copy-resources:
#16 26.88
#16 26.88 compile:
#16 26.89 [resolver:resolve] Resolving artifacts
#16 26.90
#16 26.90 jar:
#16 26.90 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 26.91 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 26.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 26.91 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.92 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 26.92
#16 26.92 deps-formats-bsd:
#16 26.92
#16 26.92 jar-formats-bsd:
#16 27.01 [echo] isSnapshot = true
#16 27.16
#16 27.16 init-title:
#16 27.16 [echo] ----------=========== formats-bsd ===========----------
#16 27.16
#16 27.16 init-timestamp:
#16 27.16
#16 27.16 init:
#16 27.16
#16 27.16 copy-resources:
#16 27.16
#16 27.16 compile:
#16 27.35 [resolver:resolve] Resolving artifacts
#16 27.37
#16 27.37 formats-bsd.jar:
#16 27.41 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 27.41 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 27.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 27.41 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.41 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.41
#16 27.41 deps-formats-gpl:
#16 27.41
#16 27.41 jar-formats-gpl:
#16 27.50 [echo] isSnapshot = true
#16 27.64
#16 27.64 init-title:
#16 27.64 [echo] ----------=========== formats-gpl ===========----------
#16 27.64
#16 27.64 init-timestamp:
#16 27.65
#16 27.65 init:
#16 27.65
#16 27.65 copy-resources:
#16 27.65
#16 27.65 compile:
#16 27.90 [resolver:resolve] Resolving artifacts
#16 27.92
#16 27.92 formats-gpl.jar:
#16 27.97 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 27.97 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 27.97 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 27.97 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.98 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 27.98
#16 27.98 deps-bio-formats-plugins:
#16 27.98
#16 27.98 jar-bio-formats-plugins:
#16 28.06 [echo] isSnapshot = true
#16 28.21
#16 28.21 init-title:
#16 28.21 [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.21
#16 28.21 init-timestamp:
#16 28.21
#16 28.21 init:
#16 28.21
#16 28.21 copy-resources:
#16 28.21
#16 28.21 compile:
#16 28.45 [resolver:resolve] Resolving artifacts
#16 28.47
#16 28.47 bio-formats-plugins.jar:
#16 28.48 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 28.48 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 28.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 28.48 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.49 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.49
#16 28.49 deps-bio-formats-tools:
#16 28.49
#16 28.49 jar-bio-formats-tools:
#16 28.58 [echo] isSnapshot = true
#16 28.72
#16 28.72 init-title:
#16 28.72 [echo] ----------=========== bio-formats-tools ===========----------
#16 28.72
#16 28.72 init-timestamp:
#16 28.72
#16 28.72 init:
#16 28.72
#16 28.72 copy-resources:
#16 28.73
#16 28.73 compile:
#16 28.96 [resolver:resolve] Resolving artifacts
#16 28.97
#16 28.97 bio-formats-tools.jar:
#16 28.98 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 28.98 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 28.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 28.98 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.98 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 28.98
#16 28.98 deps-tests:
#16 28.98
#16 28.98 jar-tests:
#16 29.07 [echo] isSnapshot = true
#16 29.22
#16 29.22 init-title:
#16 29.22 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.22
#16 29.22 init-timestamp:
#16 29.22
#16 29.22 init:
#16 29.22
#16 29.22 copy-resources:
#16 29.22
#16 29.22 compile:
#16 29.47 [resolver:resolve] Resolving artifacts
#16 29.48
#16 29.48 tests.jar:
#16 29.49 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 29.49 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 29.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 29.49 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.50 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.50
#16 29.50 jars:
#16 29.50
#16 29.50 tools:
#16 29.50 [echo] ----------=========== bioformats_package ===========----------
#16 29.58 [echo] isSnapshot = true
#16 29.73
#16 29.73 init-timestamp:
#16 29.73
#16 29.73 bundle:
#16 29.98 [resolver:resolve] Resolving artifacts
#16 29.99 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.02 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.04 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.07 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.07 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.14 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.16 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.21 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.22 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.45 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.50 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.52 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.58 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.59 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.60 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.60 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.78 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.30 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.38 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.39 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.47 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.57 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.59 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.74 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.76 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.83 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.87 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.88 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.91 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.93 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.42 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.45 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.52 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.62 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.64 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.93 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.00 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.06 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.17 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.18 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.19 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.31 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.32 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.78 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.79 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.92 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.02 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.03 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.04 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.22 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.23 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.24 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.25 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.26 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.29 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.75 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.89 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.25 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 41.02 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.60 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 41.61 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 41.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 41.69 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.69 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.72
#16 41.72 BUILD SUCCESSFUL
#16 41.72 Total time: 40 seconds
#16 DONE 41.9s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.3s
#18 exporting to image
#18 exporting layers
#18 exporting layers 15.2s done
#18 writing image sha256:157c0b32e5c68cb8ac11e5becbec7b0d9801afca4aa56438ffb192d80417041e done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 15.2s
Finished: SUCCESS
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