Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2529503611855450536.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_62988_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:31:59,212 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:31:59,213 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:31:59,213 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:59,214 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:59,215 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:31:59,215 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:31:59,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:31:59,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:59,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:59,216 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:31:59,216 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:31:59,216 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:31:59,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:31:59,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:31:59,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:31:59,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:31:59,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:31:59,475 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:31:59,475 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:31:59,475 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:31:59,475 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:31:59,476 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:31:59,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 01:31:59,485] [main] java.version = 1.8.0_342 [testng] 01:31:59,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:31:59,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:59,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_01-31-59.log] [testng] 01:31:59,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 01:31:59,535] [main] testng.directory = /data [testng] [2025-05-19 01:31:59,535] [main] testng.configDirectory = /config [testng] [2025-05-19 01:31:59,547] [main] testng.multiplier = 1.0 [testng] [2025-05-19 01:31:59,547] [main] testng.in-memory = false [testng] [2025-05-19 01:31:59,547] [main] testng.allow-missing = false [testng] [2025-05-19 01:31:59,547] [main] user.language = fr [testng] [2025-05-19 01:31:59,547] [main] user.country = FR [testng] [2025-05-19 01:31:59,547] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 02:21:50,822] [main] ---------------------------------------- [testng] [2025-05-19 02:21:50,822] [main] Total files: 226 [testng] [2025-05-19 02:21:50,822] [main] Scan time: 2991.275 s (13235 ms/file) [testng] [2025-05-19 02:21:50,822] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 03:51:31,253] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 03:51:31,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:51:31,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:31,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_03-51-31.log] [testng] 03:51:31,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36bb22d - End of configuration. [testng] [2025-05-19 03:51:47,171] [pool-1-thread-12] Initializing /data/iplab/16Bit XRay.IPL: [testng] 03:51:47,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:51:47,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:47,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_03-51-47.log] [testng] 03:51:47,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6112e74f - End of configuration. [testng] [2025-05-19 03:51:48,995] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 03:51:48,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:51:48,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:48,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_03-51-48.log] [testng] 03:51:48,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2336b3f6 - End of configuration. [testng] [2025-05-19 03:52:14,909] [pool-1-thread-10] Initializing /data/iplab/Chromosomes.IPL: [testng] 03:52:14,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:52:14,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:14,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_03-52-14.log] [testng] 03:52:14,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47225e39 - End of configuration. [testng] [2025-05-19 03:52:20,211] [pool-1-thread-9] Initializing /data/iplab/Blend_DIC.IPL: [testng] 03:52:20,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:52:20,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:20,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_03-52-20.log] [testng] 03:52:20,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70468862 - End of configuration. [testng] [2025-05-19 03:52:25,755] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 03:52:25,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:52:25,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:25,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_03-52-25.log] [testng] 03:52:25,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d74f88d - End of configuration. [testng] [2025-05-19 03:52:44,624] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 03:52:44,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:52:44,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:44,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_03-52-44.log] [testng] 03:52:44,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@414c1812 - End of configuration. [testng] [2025-05-19 03:53:16,049] [pool-1-thread-6] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] 03:53:16,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:53:16,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:16,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_03-53-16.log] [testng] 03:53:16,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4feef7a8 - End of configuration. [testng] [2025-05-19 03:53:37,483] [pool-1-thread-5] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 03:53:37,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:53:37,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:37,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_03-53-37.log] [testng] 03:53:37,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b7e3d18 - End of configuration. [testng] [2025-05-19 03:53:40,775] [pool-1-thread-4] Initializing /data/iplab/Blend_Dapi.IPL: [testng] 03:53:40,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:53:40,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:40,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_03-53-40.log] [testng] 03:53:40,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@735fc487 - End of configuration. [testng] [2025-05-19 03:53:42,567] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 03:53:42,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:53:42,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:42,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_03-53-42.log] [testng] 03:53:42,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f8c1634 - End of configuration. [testng] [2025-05-19 03:53:57,715] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 03:53:57,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:53:57,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:57,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_03-53-57.log] [testng] 03:53:57,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e398867 - End of configuration. [testng] [2025-05-19 03:54:46,706] [pool-1-thread-4] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2025-05-19 03:54:52,805] [pool-1-thread-12] Initializing /data/iplab/Actin.IPL: [testng] [2025-05-19 03:54:54,795] [pool-1-thread-10] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2025-05-19 03:55:09,672] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2025-05-19 03:55:13,633] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2025-05-19 03:55:57,345] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL: [testng] [2025-05-19 03:56:02,987] [pool-1-thread-9] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2025-05-19 03:56:14,306] [pool-1-thread-4] Initializing /data/iplab/Color Image.IPL: [testng] [2025-05-19 03:56:30,364] [pool-1-thread-2] Initializing /data/iplab/Blend_Final.IPL: [testng] [2025-05-19 03:56:32,112] [pool-1-thread-7] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2025-05-19 03:56:34,926] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2025-05-19 03:56:38,772] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2025-05-19 03:56:54,591] [pool-1-thread-11] Initializing /data/fluoview/Sample_XT.tif: [testng] [2025-05-19 03:57:07,662] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2025-05-19 03:57:19,488] [pool-1-thread-9] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2025-05-19 03:57:29,987] [pool-1-thread-4] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 148 minutes 13 seconds Finished: SUCCESS