14:12:23 Started by upstream project "Trigger" build number 17 14:12:23 originally caused by: 14:12:23 Started by user devspace 14:12:23 Restarted from build #16, stage OMERO Jars 14:12:23 Running as SYSTEM 14:12:23 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 14:12:23 The recommended git tool is: NONE 14:12:23 No credentials specified 14:12:23 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 14:12:23 Fetching changes from the remote Git repository 14:12:23 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 14:12:23 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 14:12:23 > git --version # timeout=10 14:12:23 > git --version # 'git version 2.39.3' 14:12:23 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 14:12:23 > git rev-parse origin/merge_ci^{commit} # timeout=10 14:12:23 Checking out Revision 54c08a8db8f2530bc217ffc119c1bfaeb17e3415 (origin/merge_ci) 14:12:23 > git config core.sparsecheckout # timeout=10 14:12:23 > git checkout -f 54c08a8db8f2530bc217ffc119c1bfaeb17e3415 # timeout=10 14:12:23 Commit message: "Add version.properties to etc/omero.properties" 14:12:23 > git rev-list --no-walk 4eeebf6f54501b7148e1f9f93ec8439870a6e007 # timeout=10 14:12:23 Cleaning workspace 14:12:23 > git rev-parse --verify HEAD # timeout=10 14:12:23 Resetting working tree 14:12:23 > git reset --hard # timeout=10 14:12:23 > git clean -fdx # timeout=10 14:12:24 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 14 14:12:24 [OMERO-build] $ /bin/bash -xe /tmp/jenkins13604102583520540125.sh 14:12:24 + mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz . 14:12:24 + cd src 14:12:24 + export OMERO_BRANCH=merge_ci 14:12:24 + OMERO_BRANCH=merge_ci 14:12:24 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 14:12:24 + source /home/omero/settings.env 14:12:24 ++ OMERO_DB_HOST=pg 14:12:24 ++ OMERO_DB_USER=postgres 14:12:24 ++ OMERO_DB_PASS= 14:12:24 ++ OMERO_ROOT_PASS=omero 14:12:24 ++ OMERO_DATA_DIR=/OMERO 14:12:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 14:12:24 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 14:12:25 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 14:12:26 Collecting zeroc-ice==3.6.5 14:12:26 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 14:12:28 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 14:12:28 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 14:12:28 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 14:12:29 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0) 14:12:29 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1) 14:12:29 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 14:12:29 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 14:12:29 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 14:12:29 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 14:12:29 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 14:12:29 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 14:12:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 14:12:29 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 14:12:29 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 14:12:29 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 14:12:29 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 14:12:29 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 14:12:30 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 14:12:30 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 14:12:30 + source docs/hudson/OMERO.sh 14:12:30 ++ set -e 14:12:30 ++ set -u 14:12:30 ++ set -x 14:12:30 ++ source docs/hudson/functions.sh 14:12:30 ++ echo Building merge_ci 14:12:30 Building merge_ci 14:12:30 ++ python3 ./build.py build-dev release-all 14:12:30 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 14:12:30 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 14:12:30 14:12:30 check-ivy: 14:12:30 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 14:12:30 Created dir: /home/omero/workspace/OMERO-build/src/target 14:12:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:12:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:12:31 14:12:31 build-scons: 14:12:31 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 14:12:31 No sub-builds to iterate on 14:12:31 Entering /home/omero/workspace/OMERO-build/src/components/tools... 14:12:31 14:12:31 buildlist: 14:12:31 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:12:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:12:31 14:12:31 clean: 14:12:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:12:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:12:31 14:12:31 python-clean: 14:12:31 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 14:12:31 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-54c08a8db8-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 14:12:31 warnings.warn( 14:12:31 running clean 14:12:32 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 14:12:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 14:12:32 14:12:32 python-clean: 14:12:32 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 14:12:32 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-54c08a8db8-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 14:12:32 warnings.warn( 14:12:32 running clean 14:12:32 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 14:12:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:12:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:12:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:12:32 14:12:32 python-clean: 14:12:32 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 14:12:32 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-54c08a8db8-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 14:12:32 warnings.warn( 14:12:32 running clean 14:12:32 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 14:12:32 Deleting directory /home/omero/workspace/OMERO-build/src/target 14:12:32 14:12:32 build-scons: 14:12:32 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 14:12:32 14:12:32 build: 14:12:32 No sub-builds to iterate on 14:12:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:12:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:12:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 14:12:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:12:32 14:12:32 tools-init: 14:12:32 no-op 14:12:32 14:12:32 retrieve: 14:12:32 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:12:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:12:33 WARNING: An illegal reflective access operation has occurred 14:12:33 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 14:12:33 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 14:12:33 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 14:12:33 WARNING: All illegal access operations will be denied in a future release 14:13:24 14:13:24 prepare: 14:13:24 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 14:13:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 14:13:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 14:13:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:13:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:13:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 14:13:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 14:13:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:13:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:13:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:13:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:13:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:13:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:13:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:13:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:13:24 14:13:24 pre-compile: 14:13:24 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:13:24 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:13:25 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:13:25 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:13:25 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:13:25 14:13:25 compile: 14:13:25 no-op 14:13:25 14:13:25 package: 14:13:25 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 14:13:25 14:13:25 install: 14:13:25 :: delivering :: omero#omero_client;working@10aac2d9aa47 :: 5.6.3-437-54c08a8db8-ice36 :: integration :: Wed Mar 27 14:12:32 UTC 2024 14:13:25 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 14:13:25 :: publishing :: omero#omero_client 14:13:25 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-54c08a8db8-ice36/omero_client-5.6.3-437-54c08a8db8-ice36.jar 14:13:25 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-54c08a8db8-ice36/omero_client-5.6.3-437-54c08a8db8-ice36.xml 14:13:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:13:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:13:26 14:13:26 retrieve: 14:13:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:13:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:13:26 Entering /home/omero/workspace/OMERO-build/src/components/tools... 14:13:26 14:13:26 dist: 14:13:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 14:13:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 14:13:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 14:13:26 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 14:13:26 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 14:13:26 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 14:13:26 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 14:13:26 Entering /home/omero/workspace/OMERO-build/src/components/tests... 14:13:26 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 14:13:26 14:13:26 copy-licenses: 14:13:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 14:13:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 14:13:26 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 14:13:26 14:13:26 copy-history: 14:13:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 14:13:26 14:13:26 copy-etc: 14:13:26 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 14:13:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 14:13:26 14:13:26 copy-sql: 14:13:26 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 14:13:42 14:13:42 copy-server: 14:13:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 14:13:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.17.100 won 14:13:42 14:13:42 copy-client: 14:13:42 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 14:13:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 14:13:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.17.100 won 14:13:44 14:13:44 update-version: 14:13:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 14:13:44 14:13:44 create-workdirs: 14:13:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 14:13:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 14:13:44 14:13:44 copy-luts: 14:13:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 14:13:44 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 14:13:44 14:13:44 test-compile: 14:13:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:13:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 14:13:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:13:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:13:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:13:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:13:44 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 14:13:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:13:44 14:13:44 testng-init: 14:13:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:13:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:13:47 14:13:47,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 14:13:47 14:13:47,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - No custom configurators were discovered as a service. 14:13:47 14:13:47,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 14:13:47 14:13:47,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 14:13:47 14:13:47,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 14:13:47 14:13:47,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 14:13:47 14:13:47,092 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 14:13:47 14:13:47,092 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 14:13:47 14:13:47,093 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 14:13:47 14:13:47,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 14:13:47 14:13:47,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 14:13:47 14:13:47,095 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4977e352 - Resource [logback.xml] occurs multiple times on the classpath. 14:13:47 14:13:47,095 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4977e352 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 14:13:47 14:13:47,095 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4977e352 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 14:13:47 14:13:47,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 14:13:47 14:13:47,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 14:13:47 14:13:47,318 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 14:13:47 14:13:47,320 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@17c3a3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 14:13:47 14:13:47,320 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@17c3a3 - Please move "immediateFlush" property into the enclosing appender. 14:13:47 14:13:47,385 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@17c3a3 - Setting the "immediateFlush" property of the enclosing appender to true 14:13:47 14:13:47,385 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 14:13:47 14:13:47,386 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 14:13:47 14:13:47,386 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 14:13:47 14:13:47,386 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 14:13:47 14:13:47,386 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 14:13:47 14:13:47,386 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 14:13:47 14:13:47,387 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1d2fd73c - End of configuration. 14:13:47 14:13:47,389 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@24602d7a - Registering current configuration as safe fallback point 14:13:47 14:13:47,389 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 296 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 14:13:47 14:13:47 lifecycle.test-compile: 14:13:47 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 14:13:47 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 14:13:47 warning: [options] bootstrap class path not set in conjunction with -source 8 14:13:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:13:48 import omero.grid.RawAccessRequest; 14:13:48 ^ 14:13:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:13:49 import omero.grid.RawAccessRequest; 14:13:49 ^ 14:13:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:13:49 import omero.grid.RawAccessRequest; 14:13:49 ^ 14:13:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 14:13:49 import omero.model.ImportJob; 14:13:49 ^ 14:13:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 14:13:49 import omero.model.ImportJobI; 14:13:49 ^ 14:13:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 14:13:49 IObject link = (IObject) linkClass.newInstance(); 14:13:49 ^ 14:13:49 where T is a type-variable: 14:13:49 T extends Object declared in class Class 14:13:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 14:13:50 T copy = (T) obj.getClass().newInstance(); 14:13:50 ^ 14:13:50 where T is a type-variable: 14:13:50 T extends Object declared in class Class 14:13:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:13:50 RawAccessRequest raw = new RawAccessRequest(); 14:13:50 ^ 14:13:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:13:50 RawAccessRequest raw = new RawAccessRequest(); 14:13:50 ^ 14:13:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 14:13:50 raw.repoUuid = legacy.root().getHash().getValue(); 14:13:50 ^ 14:13:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 14:13:50 raw.command = "rm"; 14:13:50 ^ 14:13:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 14:13:50 raw.args = Arrays.asList(path); 14:13:50 ^ 14:13:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 14:13:50 final IObject link = linkClass.newInstance(); 14:13:50 ^ 14:13:50 where T is a type-variable: 14:13:50 T extends Object declared in class Class 14:13:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 14:13:50 originalLink.setChild(annotationClass.newInstance()); 14:13:50 ^ 14:13:50 where T is a type-variable: 14:13:50 T extends Object declared in class Class 14:13:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 14:13:50 RoiResult r = svc.findByImage(id, new RoiOptions()); 14:13:50 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:13:51 final RawAccessRequest request = new RawAccessRequest(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:13:51 final RawAccessRequest request = new RawAccessRequest(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 14:13:51 request.repoUuid = repo.root().getHash().getValue(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 14:13:51 request.command = "exists"; 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 14:13:51 request.args = Collections.singletonList(dirPath); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:13:51 final RawAccessRequest request = new RawAccessRequest(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:13:51 final RawAccessRequest request = new RawAccessRequest(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 14:13:51 request.repoUuid = repo.root().getHash().getValue(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 14:13:51 request.command = "exists"; 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 14:13:51 request.args = Collections.singletonList(dirName); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 14:13:51 final ImportJob importJob = new ImportJobI(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 14:13:51 final ImportJob importJob = new ImportJobI(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 14:13:51 importJob.setImageName(omero.rtypes.rstring(name)); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 14:13:51 importJob.setImageDescription(omero.rtypes.rstring(desc)); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 14:13:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 14:13:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 14:13:51 final String savedName = sent.getImageName().getValue().toString(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 14:13:51 final String savedDesc = sent.getImageDescription().getValue().toString(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 14:13:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 14:13:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 14:13:51 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 14:13:51 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 14:13:51 RoiResult r = svc.findByImage(image.getId().getValue(), 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:13:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:13:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:13:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:13:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 14:13:51 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:13:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 14:13:51 table = svc.getTable(f.getId().getValue()); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 14:13:51 RoiResult r = svc.findByImage(image.getId().getValue(), 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 14:13:51 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 14:13:51 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 14:13:51 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 14:13:51 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 14:13:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 14:13:51 svc.getShapeStatsRestricted( 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 14:13:51 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:13:51 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 14:13:51 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 14:13:51 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 14:13:51 request.typesToIgnore = Collections.singletonList("Annotation"); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 14:13:51 request.typesToIgnore = Collections.singletonList("Annotation"); 14:13:51 ^ 14:13:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:13:51 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 14:13:51 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:13:52 p2.setRelatedTo(p1); 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:13:52 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:13:52 pixels1.setRelatedTo(pixels2); 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:13:52 Pixels pixels = pixels1.getRelatedTo(); 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:13:52 Assert.assertNull(pixels1.getRelatedTo()); 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:13:52 pixels1.setRelatedTo(pixels2); 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:13:52 Pixels pixels = pixels1.getRelatedTo(); 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:13:52 Assert.assertNull(pixels1.getRelatedTo()); 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:13:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:13:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:13:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:13:52 ^ 14:13:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:13:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 14:13:52 ^ 14:13:52 Note: Some input files use unchecked or unsafe operations. 14:13:52 Note: Recompile with -Xlint:unchecked for details. 14:13:52 88 warnings 14:13:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_752390038.tmp 14:13:52 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 14:13:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:13:52 :: delivering :: omero#OmeroJava-test;working@10aac2d9aa47 :: 5.6.3-437-54c08a8db8-ice36 :: integration :: Wed Mar 27 14:13:44 UTC 2024 14:13:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 14:13:52 :: publishing :: omero#OmeroJava-test 14:13:52 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-54c08a8db8-ice36.jar 14:13:52 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-54c08a8db8-ice36.xml 14:13:52 14:13:52 build-eclipse: 14:13:52 No sub-builds to iterate on 14:13:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:13:52 14:13:52 retrieve: 14:13:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:13:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:13:55 14:13:55 prepare: 14:13:55 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 14:13:58 14:13:58 release-clients: 14:13:58 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-437-54c08a8db8-ice36.zip 14:14:04 14:14:04 release-zip: 14:14:04 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-437-54c08a8db8-ice36.zip 14:14:16 14:14:16 BUILD SUCCESSFUL 14:14:16 Total time: 1 minute 45 seconds 14:14:16 ++ '[' -d .git ']' 14:14:16 ++ python3 ./build.py release-src 14:14:16 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 14:14:16 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 14:14:16 14:14:16 release-src-git: 14:14:16 Releasing openmicroscopy-5.6.3-437-54c08a8db8-ice36 14:14:17 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-54c08a8db8-ice36.zip 14:14:17 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-54c08a8db8-ice36-base.zip 14:14:19 14:14:19 BUILD SUCCESSFUL 14:14:19 Total time: 3 seconds 14:14:19 ++ echo BUILD_NUMBER=14 14:14:19 ++ echo OMERO_BRANCH=merge_ci 14:14:19 ++ git_info 14:14:19 +++ git rev-parse HEAD 14:14:19 ++ HEAD=54c08a8db8f2530bc217ffc119c1bfaeb17e3415 14:14:19 ++ git log --max-count=1 54c08a8db8f2530bc217ffc119c1bfaeb17e3415 14:14:19 ++ env 14:14:19 ++ sort 14:14:19 Archiving artifacts 14:14:47 Finished: SUCCESS