10:13:41 Started by upstream project "Trigger" build number 27 10:13:41 originally caused by: 10:13:41 Started by user devspace 10:13:41 Running as SYSTEM 10:13:41 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 10:13:41 The recommended git tool is: NONE 10:13:41 No credentials specified 10:13:41 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 10:13:41 Fetching changes from the remote Git repository 10:13:41 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 10:13:41 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 10:13:41 > git --version # timeout=10 10:13:41 > git --version # 'git version 2.39.3' 10:13:41 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 10:13:46 > git rev-parse origin/merge_ci^{commit} # timeout=10 10:13:46 Checking out Revision f92d3a915e0011bf18e8497fe0fceb4a0948be8a (origin/merge_ci) 10:13:46 > git config core.sparsecheckout # timeout=10 10:13:46 > git checkout -f f92d3a915e0011bf18e8497fe0fceb4a0948be8a # timeout=10 10:13:46 Commit message: "Add version.properties to etc/omero.properties" 10:13:46 > git rev-list --no-walk 02d2190d741277aebbf6111ff4a23bf4c9459ef7 # timeout=10 10:13:46 Cleaning workspace 10:13:46 > git rev-parse --verify HEAD # timeout=10 10:13:46 Resetting working tree 10:13:46 > git reset --hard # timeout=10 10:13:47 > git clean -fdx # timeout=10 10:13:50 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 23 10:13:50 [OMERO-build] $ /bin/bash -xe /tmp/jenkins10755210962756551892.sh 10:13:50 + mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz . 10:13:50 + cd src 10:13:50 + export OMERO_BRANCH=merge_ci 10:13:50 + OMERO_BRANCH=merge_ci 10:13:50 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 10:13:50 + source /home/omero/settings.env 10:13:50 ++ OMERO_DB_HOST=pg 10:13:50 ++ OMERO_DB_USER=postgres 10:13:50 ++ OMERO_DB_PASS= 10:13:50 ++ OMERO_ROOT_PASS=omero 10:13:50 ++ OMERO_DATA_DIR=/OMERO 10:13:50 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:13:50 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 10:13:54 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 10:13:57 Collecting zeroc-ice==3.6.5 10:13:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 10:14:00 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 10:14:00 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 10:14:00 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 10:14:00 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0) 10:14:01 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1) 10:14:01 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 10:14:01 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 10:14:01 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 10:14:01 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 10:14:01 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 10:14:01 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 10:14:01 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 10:14:01 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 10:14:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 10:14:01 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 10:14:01 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 10:14:01 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 10:14:01 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 10:14:01 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 10:14:02 + source docs/hudson/OMERO.sh 10:14:02 ++ set -e 10:14:02 ++ set -u 10:14:02 ++ set -x 10:14:02 ++ source docs/hudson/functions.sh 10:14:02 ++ echo Building merge_ci 10:14:02 Building merge_ci 10:14:02 ++ python3 ./build.py build-dev release-all 10:14:02 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 10:14:04 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:14:06 10:14:06 check-ivy: 10:14:06 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 10:14:06 Created dir: /home/omero/workspace/OMERO-build/src/target 10:14:08 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:14:08 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:14:09 10:14:09 build-scons: 10:14:09 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:14:09 No sub-builds to iterate on 10:14:09 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:14:10 10:14:10 buildlist: 10:14:10 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:14:10 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:14:10 10:14:10 clean: 10:14:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:14:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:14:10 10:14:10 python-clean: 10:14:10 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:14:10 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-451-f92d3a915e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:14:10 warnings.warn( 10:14:10 running clean 10:14:10 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 10:14:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:14:11 10:14:11 python-clean: 10:14:11 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:14:11 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-451-f92d3a915e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:14:11 warnings.warn( 10:14:11 running clean 10:14:11 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 10:14:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:14:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:14:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:14:11 10:14:11 python-clean: 10:14:11 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:14:11 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-451-f92d3a915e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:14:11 warnings.warn( 10:14:11 running clean 10:14:11 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 10:14:11 Deleting directory /home/omero/workspace/OMERO-build/src/target 10:14:11 10:14:11 build-scons: 10:14:11 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:14:11 10:14:11 build: 10:14:11 No sub-builds to iterate on 10:14:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:14:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:14:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:14:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:14:11 10:14:11 tools-init: 10:14:11 no-op 10:14:11 10:14:11 retrieve: 10:14:11 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:14:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:14:12 WARNING: An illegal reflective access operation has occurred 10:14:12 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 10:14:12 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 10:14:12 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 10:14:12 WARNING: All illegal access operations will be denied in a future release 10:15:14 10:15:14 prepare: 10:15:14 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:15:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 10:15:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 10:15:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:15:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:15:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:15:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 10:15:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:15:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:15:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:15:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:15:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:15:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:15:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:15:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:15:14 10:15:14 pre-compile: 10:15:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:15:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:15:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:15:15 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:15:15 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:15:15 10:15:15 compile: 10:15:15 no-op 10:15:15 10:15:15 package: 10:15:15 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 10:15:15 10:15:15 install: 10:15:15 :: delivering :: omero#omero_client;working@aa84d84ce982 :: 5.6.3-451-f92d3a915e-ice36 :: integration :: Fri Apr 05 10:14:11 UTC 2024 10:15:15 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 10:15:15 :: publishing :: omero#omero_client 10:15:15 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-451-f92d3a915e-ice36/omero_client-5.6.3-451-f92d3a915e-ice36.jar 10:15:15 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-451-f92d3a915e-ice36/omero_client-5.6.3-451-f92d3a915e-ice36.xml 10:15:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:15:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:15:16 10:15:16 retrieve: 10:15:16 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:15:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:15:16 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:15:16 10:15:16 dist: 10:15:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 10:15:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 10:15:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:15:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:15:16 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 10:15:16 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 10:15:16 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 10:15:16 Entering /home/omero/workspace/OMERO-build/src/components/tests... 10:15:16 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:15:16 10:15:16 copy-licenses: 10:15:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:15:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 10:15:16 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 10:15:17 10:15:17 copy-history: 10:15:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:15:17 10:15:17 copy-etc: 10:15:17 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 10:15:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 10:15:17 10:15:17 copy-sql: 10:15:17 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 10:15:36 10:15:36 copy-server: 10:15:36 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 10:15:36 10:15:36 copy-client: 10:15:36 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 10:15:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 10:15:38 10:15:38 update-version: 10:15:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 10:15:38 10:15:38 create-workdirs: 10:15:38 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 10:15:38 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 10:15:38 10:15:38 copy-luts: 10:15:38 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:15:38 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:15:38 10:15:38 test-compile: 10:15:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:15:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:15:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:15:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:15:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:15:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:15:39 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:15:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:15:39 10:15:39 testng-init: 10:15:39 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:15:39 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:15:44 10:15:43,877 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 10:15:44 10:15:43,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - No custom configurators were discovered as a service. 10:15:44 10:15:43,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 10:15:44 10:15:43,884 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 10:15:44 10:15:43,885 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 10:15:44 10:15:43,885 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 10:15:44 10:15:43,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 10:15:44 10:15:43,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 10:15:44 10:15:43,888 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 10:15:44 10:15:43,888 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 10:15:44 10:15:43,889 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:15:44 10:15:43,890 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs multiple times on the classpath. 10:15:44 10:15:43,890 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:15:44 10:15:43,890 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 10:15:44 10:15:44,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 10:15:44 10:15:44,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 10:15:44 10:15:44,449 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 10:15:44 10:15:44,452 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 10:15:44 10:15:44,452 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Please move "immediateFlush" property into the enclosing appender. 10:15:44 10:15:44,603 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Setting the "immediateFlush" property of the enclosing appender to true 10:15:44 10:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 10:15:44 10:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 10:15:44 10:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 10:15:44 10:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 10:15:44 10:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 10:15:44 10:15:44,604 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 10:15:44 10:15:44,606 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5bd8b901 - End of configuration. 10:15:44 10:15:44,608 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5390bdee - Registering current configuration as safe fallback point 10:15:44 10:15:44,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 720 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 10:15:44 10:15:44 lifecycle.test-compile: 10:15:44 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:15:44 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:15:45 warning: [options] bootstrap class path not set in conjunction with -source 8 10:15:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:15:48 import omero.grid.RawAccessRequest; 10:15:48 ^ 10:15:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:15:49 import omero.grid.RawAccessRequest; 10:15:49 ^ 10:15:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:15:49 import omero.grid.RawAccessRequest; 10:15:49 ^ 10:15:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 10:15:49 import omero.model.ImportJob; 10:15:49 ^ 10:15:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:15:49 import omero.model.ImportJobI; 10:15:49 ^ 10:15:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 10:15:50 IObject link = (IObject) linkClass.newInstance(); 10:15:50 ^ 10:15:50 where T is a type-variable: 10:15:50 T extends Object declared in class Class 10:15:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 10:15:51 T copy = (T) obj.getClass().newInstance(); 10:15:51 ^ 10:15:51 where T is a type-variable: 10:15:51 T extends Object declared in class Class 10:15:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:15:51 RawAccessRequest raw = new RawAccessRequest(); 10:15:51 ^ 10:15:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:15:51 RawAccessRequest raw = new RawAccessRequest(); 10:15:51 ^ 10:15:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:15:51 raw.repoUuid = legacy.root().getHash().getValue(); 10:15:51 ^ 10:15:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 10:15:51 raw.command = "rm"; 10:15:51 ^ 10:15:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 10:15:51 raw.args = Arrays.asList(path); 10:15:51 ^ 10:15:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 10:15:51 final IObject link = linkClass.newInstance(); 10:15:51 ^ 10:15:51 where T is a type-variable: 10:15:51 T extends Object declared in class Class 10:15:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 10:15:51 originalLink.setChild(annotationClass.newInstance()); 10:15:51 ^ 10:15:51 where T is a type-variable: 10:15:51 T extends Object declared in class Class 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:15:52 RoiResult r = svc.findByImage(id, new RoiOptions()); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:15:52 final RawAccessRequest request = new RawAccessRequest(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:15:52 final RawAccessRequest request = new RawAccessRequest(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:15:52 request.repoUuid = repo.root().getHash().getValue(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 10:15:52 request.command = "exists"; 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 10:15:52 request.args = Collections.singletonList(dirPath); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:15:52 final RawAccessRequest request = new RawAccessRequest(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:15:52 final RawAccessRequest request = new RawAccessRequest(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:15:52 request.repoUuid = repo.root().getHash().getValue(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 10:15:52 request.command = "exists"; 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 10:15:52 request.args = Collections.singletonList(dirName); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 10:15:52 final ImportJob importJob = new ImportJobI(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:15:52 final ImportJob importJob = new ImportJobI(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 10:15:52 importJob.setImageName(omero.rtypes.rstring(name)); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 10:15:52 importJob.setImageDescription(omero.rtypes.rstring(desc)); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:15:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:15:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:15:52 final String savedName = sent.getImageName().getValue().toString(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:15:52 final String savedDesc = sent.getImageDescription().getValue().toString(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:15:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:15:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:15:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 10:15:52 ^ 10:15:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:15:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 10:15:52 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 RoiResult r = svc.findByImage(image.getId().getValue(), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 10:15:53 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 10:15:53 table = svc.getTable(f.getId().getValue()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 RoiResult r = svc.findByImage(image.getId().getValue(), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:15:53 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:15:53 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 10:15:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:15:53 svc.getShapeStatsRestricted( 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:15:53 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:15:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:15:53 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:15:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:15:53 request.typesToIgnore = Collections.singletonList("Annotation"); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:15:53 request.typesToIgnore = Collections.singletonList("Annotation"); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:15:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:15:53 p2.setRelatedTo(p1); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:15:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:15:53 pixels1.setRelatedTo(pixels2); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:15:53 Pixels pixels = pixels1.getRelatedTo(); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:15:53 Assert.assertNull(pixels1.getRelatedTo()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:15:53 pixels1.setRelatedTo(pixels2); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:15:53 Pixels pixels = pixels1.getRelatedTo(); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:15:53 Assert.assertNull(pixels1.getRelatedTo()); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:15:53 ^ 10:15:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:15:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:15:53 ^ 10:15:54 Note: Some input files use unchecked or unsafe operations. 10:15:54 Note: Recompile with -Xlint:unchecked for details. 10:15:54 88 warnings 10:15:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_328370346.tmp 10:15:54 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 10:15:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:15:54 :: delivering :: omero#OmeroJava-test;working@aa84d84ce982 :: 5.6.3-451-f92d3a915e-ice36 :: integration :: Fri Apr 05 10:15:39 UTC 2024 10:15:54 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 10:15:54 :: publishing :: omero#OmeroJava-test 10:15:54 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-451-f92d3a915e-ice36.jar 10:15:54 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-451-f92d3a915e-ice36.xml 10:15:54 10:15:54 build-eclipse: 10:15:54 No sub-builds to iterate on 10:15:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:15:54 10:15:54 retrieve: 10:15:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:15:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:15:57 10:15:57 prepare: 10:15:57 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:15:58 10:15:58 release-clients: 10:15:58 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-451-f92d3a915e-ice36.zip 10:16:04 10:16:04 release-zip: 10:16:04 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-451-f92d3a915e-ice36.zip 10:16:18 10:16:18 BUILD SUCCESSFUL 10:16:18 Total time: 2 minutes 13 seconds 10:16:18 ++ '[' -d .git ']' 10:16:18 ++ python3 ./build.py release-src 10:16:19 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 10:16:19 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:16:20 10:16:20 release-src-git: 10:16:20 Releasing openmicroscopy-5.6.3-451-f92d3a915e-ice36 10:16:23 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-451-f92d3a915e-ice36.zip 10:16:23 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-451-f92d3a915e-ice36-base.zip 10:16:24 10:16:24 BUILD SUCCESSFUL 10:16:24 Total time: 5 seconds 10:16:24 ++ echo BUILD_NUMBER=23 10:16:24 ++ echo OMERO_BRANCH=merge_ci 10:16:24 ++ git_info 10:16:24 +++ git rev-parse HEAD 10:16:24 ++ HEAD=f92d3a915e0011bf18e8497fe0fceb4a0948be8a 10:16:24 ++ git log --max-count=1 f92d3a915e0011bf18e8497fe0fceb4a0948be8a 10:16:24 ++ env 10:16:24 ++ sort 10:16:24 Archiving artifacts 10:16:55 Finished: SUCCESS