13:04:16 Started by user devspace 13:04:16 Running as SYSTEM 13:04:16 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 13:04:16 The recommended git tool is: NONE 13:04:16 No credentials specified 13:04:16 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 13:04:17 Fetching changes from the remote Git repository 13:04:17 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 13:04:17 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 13:04:17 > git --version # timeout=10 13:04:17 > git --version # 'git version 2.39.3' 13:04:17 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 13:04:20 > git rev-parse origin/merge_ci^{commit} # timeout=10 13:04:20 Checking out Revision 85dade3b4a6eff1bd46d6232c55283b48374bced (origin/merge_ci) 13:04:20 > git config core.sparsecheckout # timeout=10 13:04:20 > git checkout -f 85dade3b4a6eff1bd46d6232c55283b48374bced # timeout=10 13:04:20 Commit message: "Add version.properties to etc/omero.properties" 13:04:20 > git rev-list --no-walk f03a779e14f97d4a0f97b714c01f71369552fa2e # timeout=10 13:04:20 Cleaning workspace 13:04:20 > git rev-parse --verify HEAD # timeout=10 13:04:20 Resetting working tree 13:04:20 > git reset --hard # timeout=10 13:04:20 > git clean -fdx # timeout=10 13:04:20 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 56 13:04:20 [OMERO-build] $ /bin/bash -xe /tmp/jenkins13407929657452904900.sh 13:04:20 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 13:04:20 + cd src 13:04:20 + export OMERO_BRANCH=merge_ci 13:04:20 + OMERO_BRANCH=merge_ci 13:04:20 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 13:04:20 + source /home/omero/settings.env 13:04:20 ++ OMERO_DB_HOST=pg 13:04:20 ++ OMERO_DB_USER=postgres 13:04:20 ++ OMERO_DB_PASS= 13:04:20 ++ OMERO_ROOT_PASS=omero 13:04:20 ++ OMERO_DATA_DIR=/OMERO 13:04:20 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:04:20 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 13:04:23 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 13:04:26 Collecting zeroc-ice==3.6.5 13:04:27 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 13:04:31 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 13:04:31 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 13:04:31 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 13:04:32 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1) 13:04:32 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2) 13:04:32 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 13:04:32 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 13:04:33 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 13:04:33 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 13:04:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 13:04:33 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 13:04:33 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 13:04:33 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 13:04:33 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 13:04:33 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 13:04:33 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 13:04:33 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 13:04:33 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 13:04:33 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 13:04:33 + source docs/hudson/OMERO.sh 13:04:33 ++ set -e 13:04:33 ++ set -u 13:04:33 ++ set -x 13:04:33 ++ source docs/hudson/functions.sh 13:04:33 ++ echo Building merge_ci 13:04:33 Building merge_ci 13:04:33 ++ python3 ./build.py build-dev release-all 13:04:33 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 13:04:34 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 13:04:34 13:04:34 check-ivy: 13:04:34 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 13:04:34 Created dir: /home/omero/workspace/OMERO-build/src/target 13:04:35 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:04:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:04:35 13:04:35 build-scons: 13:04:35 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 13:04:37 No sub-builds to iterate on 13:04:37 Entering /home/omero/workspace/OMERO-build/src/components/tools... 13:04:37 13:04:37 buildlist: 13:04:37 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:04:37 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:04:37 13:04:37 clean: 13:04:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:04:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:04:39 13:04:39 python-clean: 13:04:39 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 13:04:39 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-85dade3b4a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 13:04:39 warnings.warn( 13:04:39 running clean 13:04:39 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 13:04:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 13:04:40 13:04:40 python-clean: 13:04:40 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 13:04:40 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-85dade3b4a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 13:04:40 warnings.warn( 13:04:40 running clean 13:04:40 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 13:04:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:04:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:04:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:04:40 13:04:40 python-clean: 13:04:40 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 13:04:40 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-85dade3b4a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 13:04:40 warnings.warn( 13:04:40 running clean 13:04:40 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 13:04:40 Deleting directory /home/omero/workspace/OMERO-build/src/target 13:04:40 13:04:40 build-scons: 13:04:40 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 13:04:40 13:04:40 build: 13:04:40 No sub-builds to iterate on 13:04:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:04:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:04:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 13:04:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:04:40 13:04:40 tools-init: 13:04:40 no-op 13:04:40 13:04:40 retrieve: 13:04:40 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:04:41 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:03 13:05:03 prepare: 13:05:03 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 13:05:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 13:05:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 13:05:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 13:05:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 13:05:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:04 13:05:04 pre-compile: 13:05:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:04 13:05:04 compile: 13:05:04 no-op 13:05:04 13:05:04 package: 13:05:04 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 13:05:04 13:05:04 install: 13:05:04 :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-467-85dade3b4a-ice36 :: integration :: Thu May 09 13:04:40 UTC 2024 13:05:04 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 13:05:04 :: publishing :: omero#omero_client 13:05:04 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-85dade3b4a-ice36/omero_client-5.6.3-467-85dade3b4a-ice36.jar 13:05:04 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-85dade3b4a-ice36/omero_client-5.6.3-467-85dade3b4a-ice36.xml 13:05:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:05 13:05:05 retrieve: 13:05:05 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:05:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:05 Entering /home/omero/workspace/OMERO-build/src/components/tools... 13:05:05 13:05:05 dist: 13:05:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 13:05:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 13:05:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 13:05:05 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 13:05:05 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 13:05:05 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 13:05:05 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 13:05:05 Entering /home/omero/workspace/OMERO-build/src/components/tests... 13:05:05 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 13:05:05 13:05:05 copy-licenses: 13:05:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 13:05:06 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 13:05:06 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 13:05:06 13:05:06 copy-history: 13:05:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 13:05:06 13:05:06 copy-etc: 13:05:06 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 13:05:07 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 13:05:07 13:05:07 copy-sql: 13:05:07 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 13:05:22 13:05:22 copy-server: 13:05:22 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 13:05:22 13:05:22 copy-client: 13:05:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 13:05:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 13:05:23 13:05:23 update-version: 13:05:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 13:05:23 13:05:23 create-workdirs: 13:05:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 13:05:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 13:05:23 13:05:23 copy-luts: 13:05:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 13:05:23 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 13:05:24 13:05:24 test-compile: 13:05:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 13:05:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:05:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:05:24 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 13:05:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:05:24 13:05:24 testng-init: 13:05:24 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:05:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:27 13:05:27,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 13:05:27 13:05:27,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - No custom configurators were discovered as a service. 13:05:27 13:05:27,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 13:05:27 13:05:27,394 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 13:05:27 13:05:27,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 13:05:27 13:05:27,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 13:05:27 13:05:27,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 13:05:27 13:05:27,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 13:05:27 13:05:27,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 13:05:27 13:05:27,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 13:05:27 13:05:27,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 13:05:27 13:05:27,398 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@476bf67d - Resource [logback.xml] occurs multiple times on the classpath. 13:05:27 13:05:27,398 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@476bf67d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 13:05:27 13:05:27,398 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@476bf67d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 13:05:27 13:05:27,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 13:05:27 13:05:27,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 13:05:27 13:05:27,625 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 13:05:27 13:05:27,627 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@15db58c9 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 13:05:27 13:05:27,627 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@15db58c9 - Please move "immediateFlush" property into the enclosing appender. 13:05:27 13:05:27,688 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@15db58c9 - Setting the "immediateFlush" property of the enclosing appender to true 13:05:27 13:05:27,688 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 13:05:27 13:05:27,688 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 13:05:27 13:05:27,688 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 13:05:27 13:05:27,688 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 13:05:27 13:05:27,689 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 13:05:27 13:05:27,689 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 13:05:27 13:05:27,690 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@449c3c94 - End of configuration. 13:05:27 13:05:27,692 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6e39ac84 - Registering current configuration as safe fallback point 13:05:27 13:05:27,692 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 295 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 13:05:27 13:05:27 lifecycle.test-compile: 13:05:27 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 13:05:27 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 13:05:28 warning: [options] bootstrap class path not set in conjunction with -source 8 13:05:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:31 import omero.grid.RawAccessRequest; 13:05:31 ^ 13:05:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:31 import omero.grid.RawAccessRequest; 13:05:31 ^ 13:05:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:31 import omero.grid.RawAccessRequest; 13:05:31 ^ 13:05:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:31 import omero.model.ImportJob; 13:05:31 ^ 13:05:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 13:05:31 import omero.model.ImportJobI; 13:05:31 ^ 13:05:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 13:05:32 IObject link = (IObject) linkClass.newInstance(); 13:05:32 ^ 13:05:32 where T is a type-variable: 13:05:32 T extends Object declared in class Class 13:05:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 13:05:32 T copy = (T) obj.getClass().newInstance(); 13:05:32 ^ 13:05:32 where T is a type-variable: 13:05:32 T extends Object declared in class Class 13:05:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:32 RawAccessRequest raw = new RawAccessRequest(); 13:05:32 ^ 13:05:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:32 RawAccessRequest raw = new RawAccessRequest(); 13:05:32 ^ 13:05:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 13:05:32 raw.repoUuid = legacy.root().getHash().getValue(); 13:05:32 ^ 13:05:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 13:05:32 raw.command = "rm"; 13:05:32 ^ 13:05:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 13:05:32 raw.args = Arrays.asList(path); 13:05:32 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 13:05:33 final IObject link = linkClass.newInstance(); 13:05:33 ^ 13:05:33 where T is a type-variable: 13:05:33 T extends Object declared in class Class 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 13:05:33 originalLink.setChild(annotationClass.newInstance()); 13:05:33 ^ 13:05:33 where T is a type-variable: 13:05:33 T extends Object declared in class Class 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 13:05:33 RoiResult r = svc.findByImage(id, new RoiOptions()); 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:33 final RawAccessRequest request = new RawAccessRequest(); 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:33 final RawAccessRequest request = new RawAccessRequest(); 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 13:05:33 request.repoUuid = repo.root().getHash().getValue(); 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 13:05:33 request.command = "exists"; 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 13:05:33 request.args = Collections.singletonList(dirPath); 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:33 final RawAccessRequest request = new RawAccessRequest(); 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:33 final RawAccessRequest request = new RawAccessRequest(); 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 13:05:33 request.repoUuid = repo.root().getHash().getValue(); 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 13:05:33 request.command = "exists"; 13:05:33 ^ 13:05:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 13:05:33 request.args = Collections.singletonList(dirName); 13:05:33 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:34 final ImportJob importJob = new ImportJobI(); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 13:05:34 final ImportJob importJob = new ImportJobI(); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 13:05:34 importJob.setImageName(omero.rtypes.rstring(name)); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 13:05:34 importJob.setImageDescription(omero.rtypes.rstring(desc)); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 13:05:34 final String savedName = sent.getImageName().getValue().toString(); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 13:05:34 final String savedDesc = sent.getImageDescription().getValue().toString(); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 13:05:34 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 13:05:34 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 RoiResult r = svc.findByImage(image.getId().getValue(), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 13:05:34 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 13:05:34 table = svc.getTable(f.getId().getValue()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 RoiResult r = svc.findByImage(image.getId().getValue(), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 13:05:34 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 13:05:34 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 13:05:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 13:05:34 svc.getShapeStatsRestricted( 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 13:05:34 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:05:34 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:05:34 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:05:34 request.typesToIgnore = Collections.singletonList("Annotation"); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:05:34 request.typesToIgnore = Collections.singletonList("Annotation"); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:34 p2.setRelatedTo(p1); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:34 pixels1.setRelatedTo(pixels2); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:34 Pixels pixels = pixels1.getRelatedTo(); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:34 Assert.assertNull(pixels1.getRelatedTo()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:34 pixels1.setRelatedTo(pixels2); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:34 Pixels pixels = pixels1.getRelatedTo(); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:34 Assert.assertNull(pixels1.getRelatedTo()); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:34 ^ 13:05:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:05:34 ^ 13:05:35 Note: Some input files use unchecked or unsafe operations. 13:05:35 Note: Recompile with -Xlint:unchecked for details. 13:05:35 88 warnings 13:05:35 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_490908658.tmp 13:05:35 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 13:05:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:35 :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-467-85dade3b4a-ice36 :: integration :: Thu May 09 13:05:24 UTC 2024 13:05:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 13:05:35 :: publishing :: omero#OmeroJava-test 13:05:35 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-85dade3b4a-ice36.jar 13:05:35 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-85dade3b4a-ice36.xml 13:05:35 13:05:35 build-eclipse: 13:05:35 No sub-builds to iterate on 13:05:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:05:35 13:05:35 retrieve: 13:05:35 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:05:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:37 13:05:37 prepare: 13:05:37 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 13:05:39 13:05:39 release-clients: 13:05:39 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-467-85dade3b4a-ice36.zip 13:05:45 13:05:45 release-zip: 13:05:45 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-467-85dade3b4a-ice36.zip 13:05:57 13:05:57 BUILD SUCCESSFUL 13:05:57 Total time: 1 minute 23 seconds 13:05:57 ++ '[' -d .git ']' 13:05:57 ++ python3 ./build.py release-src 13:05:57 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 13:05:57 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 13:05:57 13:05:57 release-src-git: 13:05:57 Releasing openmicroscopy-5.6.3-467-85dade3b4a-ice36 13:05:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-85dade3b4a-ice36.zip 13:05:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-85dade3b4a-ice36-base.zip 13:06:01 13:06:01 BUILD SUCCESSFUL 13:06:01 Total time: 3 seconds 13:06:01 ++ echo BUILD_NUMBER=57 13:06:01 ++ echo OMERO_BRANCH=merge_ci 13:06:01 ++ git_info 13:06:01 +++ git rev-parse HEAD 13:06:01 ++ HEAD=85dade3b4a6eff1bd46d6232c55283b48374bced 13:06:01 ++ git log --max-count=1 85dade3b4a6eff1bd46d6232c55283b48374bced 13:06:01 ++ env 13:06:01 ++ sort 13:06:01 Archiving artifacts 13:06:29 Finished: SUCCESS