Started by upstream project "Trigger" build number 310
originally caused by:
Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-plugins-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
> git --version # timeout=10
> git --version # 'git version 2.39.2'
> git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf
The recommended git tool is: NONE
No credentials specified
> git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
> git --version # timeout=10
> git --version # 'git version 2.39.2'
> git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master)
> git config core.sparsecheckout # timeout=10
> git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
Commit message: "Merge pull request #17 from jburel/python3"
> git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
> git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10
> git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-plugins.git
> git --version # timeout=10
> git --version # 'git version 2.43.5'
> git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 42aacf25de17d376508a27f59445c75cb63b7903 (refs/remotes/origin/master)
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f 42aacf25de17d376508a27f59445c75cb63b7903 # timeout=10
Commit message: "Merge pull request #418 from ome/dependabot/submodules/omero-fpbioimage-3b6c05a"
> git rev-list --no-walk 42aacf25de17d376508a27f59445c75cb63b7903 # timeout=10
Cleaning workspace
> git rev-parse --verify HEAD # timeout=10
Resetting working tree
> git reset --hard # timeout=10
> git clean -fdx # timeout=10
> git submodule foreach --recursive git reset --hard # timeout=10
> git submodule foreach --recursive git clean -fdx # timeout=10
> git remote # timeout=10
> git submodule init # timeout=10
> git submodule sync # timeout=10
> git config --get remote.origin.url # timeout=10
> git submodule init # timeout=10
> git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
> git config --get submodule.omero-figure.url # timeout=10
> git config -f .gitmodules --get submodule.omero-figure.path # timeout=10
> git config --get submodule.minimal-omero-client.url # timeout=10
> git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10
> git config --get submodule.scripts.url # timeout=10
> git config -f .gitmodules --get submodule.scripts.path # timeout=10
> git config --get submodule.omero-test-infra.url # timeout=10
> git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10
> git config --get submodule.omero-prometheus-tools.url # timeout=10
> git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10
> git config --get submodule.omero-parade.url # timeout=10
> git config -f .gitmodules --get submodule.omero-parade.path # timeout=10
> git config --get submodule.omero-mapr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10
> git config --get submodule.omero-fpbioimage.url # timeout=10
> git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10
> git config --get submodule.omero-iviewer.url # timeout=10
> git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10
> git config --get submodule.omero-gallery.url # timeout=10
> git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10
> git config --get submodule.rOMERO-gateway.url # timeout=10
> git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10
> git config --get submodule.omero-weberror.url # timeout=10
> git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10
> git config --get submodule.omero-cli-render.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10
> git config --get submodule.omero-cli-duplicate.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10
> git config --get submodule.omero-metadata.url # timeout=10
> git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10
> git config --get submodule.omero-webtest.url # timeout=10
> git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10
> git config --get submodule.omero-upload.url # timeout=10
> git config -f .gitmodules --get submodule.omero-upload.path # timeout=10
> git config --get submodule.omero-virtual-microscope.url # timeout=10
> git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10
> git config --get submodule.omero-rois.url # timeout=10
> git config -f .gitmodules --get submodule.omero-rois.path # timeout=10
> git config --get submodule.omero-signup.url # timeout=10
> git config -f .gitmodules --get submodule.omero-signup.path # timeout=10
> git config --get submodule.omero-web-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10
> git config --get submodule.omero-cli-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10
> git submodule update --init --recursive omero-figure # timeout=10
> git submodule update --init --recursive minimal-omero-client # timeout=10
> git submodule update --init --recursive scripts # timeout=10
> git submodule update --init --recursive omero-test-infra # timeout=10
> git submodule update --init --recursive omero-prometheus-tools # timeout=10
> git submodule update --init --recursive omero-parade # timeout=10
> git submodule update --init --recursive omero-mapr # timeout=10
> git submodule update --init --recursive omero-fpbioimage # timeout=10
> git submodule update --init --recursive omero-iviewer # timeout=10
> git submodule update --init --recursive omero-gallery # timeout=10
> git submodule update --init --recursive rOMERO-gateway # timeout=10
> git submodule update --init --recursive omero-weberror # timeout=10
> git submodule update --init --recursive omero-cli-render # timeout=10
> git submodule update --init --recursive omero-cli-duplicate # timeout=10
> git submodule update --init --recursive omero-metadata # timeout=10
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 273
[Pipeline] sh
> git submodule update --init --recursive omero-webtest # timeout=10
> git submodule update --init --recursive omero-upload # timeout=10
> git submodule update --init --recursive omero-virtual-microscope # timeout=10
> git submodule update --init --recursive omero-rois # timeout=10
> git submodule update --init --recursive omero-signup # timeout=10
> git submodule update --init --recursive omero-web-zarr # timeout=10
> git submodule update --init --recursive omero-cli-zarr # timeout=10
+ pushd build
~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ popd
~/workspace/OMERO-plugins-push
+ python3 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ python3 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3)
Collecting pip
Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 21.2.3
Uninstalling pip-21.2.3:
Successfully uninstalled pip-21.2.3
Successfully installed pip-24.3.1
+ python3 -m pip install scc
Collecting scc
Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
Using cached PyGithub-2.5.0-py3-none-any.whl.metadata (3.9 kB)
Collecting PyYAML>=5.1 (from scc)
Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting future (from scc)
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
Collecting ruamel.yaml.jinja2 (from scc)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting urllib3<2 (from scc)
Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB)
Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Collecting Deprecated (from PyGithub>=1.54->scc)
Using cached Deprecated-1.2.15-py2.py3-none-any.whl.metadata (5.5 kB)
Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cryptography-44.0.0-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.7 kB)
Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached certifi-2024.12.14-py3-none-any.whl.metadata (2.3 kB)
Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
Using cached wrapt-1.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Using cached scc-0.20.0-py3-none-any.whl (48 kB)
Using cached PyGithub-2.5.0-py3-none-any.whl (375 kB)
Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
Using cached requests-2.32.3-py3-none-any.whl (64 kB)
Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (724 kB)
Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Using cached Deprecated-1.2.15-py2.py3-none-any.whl (9.9 kB)
Using cached certifi-2024.12.14-py3-none-any.whl (164 kB)
Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (445 kB)
Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB)
Using cached cryptography-44.0.0-cp39-abi3-manylinux_2_28_x86_64.whl (4.2 MB)
Using cached idna-3.10-py3-none-any.whl (70 kB)
Using cached wrapt-1.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (82 kB)
Using cached pycparser-2.22-py3-none-any.whl (117 kB)
Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
Successfully installed Deprecated-1.2.15 PyGithub-2.5.0 PyYAML-6.0.2 certifi-2024.12.14 cffi-1.17.1 charset-normalizer-3.4.0 cryptography-44.0.0 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.12.2 urllib3-1.26.20 wrapt-1.17.0 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-plugins.git
+ BASE_REPO=omero-plugins.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-12-15 00:41:58,890 [ scc.config] DEBUG Found github.token
2024-12-15 00:41:58,892 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-12-15 00:41:59,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:41:59,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:41:59,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-12-15 00:41:59,849 [ scc.gh] DEBUG 4670 remaining from 5000 (Reset at 01:12
2024-12-15 00:41:59,850 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:41:59,855 [ scc.git] DEBUG Check current status
2024-12-15 00:41:59,855 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:41:59,859 [ scc.git] DEBUG 42aacf2 Merge pull request #418 from ome/dependabot/submodules/omero-fpbioimage-3b6c05a
2024-12-15 00:41:59,859 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:41:59,904 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD)
2024-12-15 00:41:59,912 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2024-12-15 00:41:59,915 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2024-12-15 00:41:59,918 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2024-12-15 00:41:59,923 [ scc.git] DEBUG 1dfb1389e449594defce3d4ac9f72df3fefb6e89 omero-figure (v7.1.0-235-g1dfb1389)
2024-12-15 00:41:59,926 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2024-12-15 00:41:59,929 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2024-12-15 00:41:59,933 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4)
2024-12-15 00:41:59,936 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2024-12-15 00:41:59,938 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2024-12-15 00:42:00,006 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2024-12-15 00:42:00,009 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6)
2024-12-15 00:42:00,012 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5)
2024-12-15 00:42:00,015 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db)
2024-12-15 00:42:00,018 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2024-12-15 00:42:00,021 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2024-12-15 00:42:00,023 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2024-12-15 00:42:00,026 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245)
2024-12-15 00:42:00,059 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2024-12-15 00:42:00,062 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2024-12-15 00:42:00,064 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2024-12-15 00:42:00,068 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2024-12-15 00:42:00,072 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:00,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2024-12-15 00:42:00,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:01,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:01,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:02,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:02,066 [ scc.git] DEBUG Resetting...
2024-12-15 00:42:02,066 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-12-15 00:42:02,075 [ scc.git] DEBUG HEAD is now at 42aacf2 Merge pull request #418 from ome/dependabot/submodules/omero-fpbioimage-3b6c05a
2024-12-15 00:42:02,075 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2024-12-15 00:42:02,176 [ scc.git] DEBUG Check current status
2024-12-15 00:42:02,176 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:02,180 [ scc.git] DEBUG 42aacf2 Merge pull request #418 from ome/dependabot/submodules/omero-fpbioimage-3b6c05a
2024-12-15 00:42:02,180 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:02,225 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD)
2024-12-15 00:42:02,228 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2024-12-15 00:42:02,231 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2024-12-15 00:42:02,234 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2024-12-15 00:42:02,239 [ scc.git] DEBUG 1dfb1389e449594defce3d4ac9f72df3fefb6e89 omero-figure (v7.1.0-235-g1dfb1389)
2024-12-15 00:42:02,242 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2024-12-15 00:42:02,245 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2024-12-15 00:42:02,248 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4)
2024-12-15 00:42:02,251 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2024-12-15 00:42:02,254 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2024-12-15 00:42:02,257 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2024-12-15 00:42:02,260 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6)
2024-12-15 00:42:02,263 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5)
2024-12-15 00:42:02,266 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db)
2024-12-15 00:42:02,269 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2024-12-15 00:42:02,272 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2024-12-15 00:42:02,275 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2024-12-15 00:42:02,277 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245)
2024-12-15 00:42:02,280 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2024-12-15 00:42:02,283 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2024-12-15 00:42:02,285 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2024-12-15 00:42:02,289 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2024-12-15 00:42:02,290 [ scc.merge] INFO Merging Pull Request(s) based on master
2024-12-15 00:42:02,290 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2024-12-15 00:42:02,290 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2024-12-15 00:42:02,290 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2024-12-15 00:42:02,290 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2024-12-15 00:42:02,290 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:42:02,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2024-12-15 00:42:03,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/422 HTTP/1.1" 200 None
2024-12-15 00:42:03,018 [ scc.repo] DEBUG # ... Include label: dependencies
2024-12-15 00:42:03,018 [ scc.repo] DEBUG - PR 422 dependabot[bot] 'Bump omero-figure from `1dfb138` to `d5050d8`'
2024-12-15 00:42:03,018 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:42:03,018 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:42:03,018 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:42:03,023 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:42:03,026 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:42:03,026 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:42:03,031 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:42:03,035 [ scc.git] DEBUG Already up to date.
2024-12-15 00:42:03,035 [ scc.git] DEBUG Calling 'git fetch origin pull/422/head'
2024-12-15 00:42:03,356 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2024-12-15 00:42:03,356 [ scc.git] DEBUG * branch refs/pull/422/head -> FETCH_HEAD
2024-12-15 00:42:03,362 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:42:03,362 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:42:03,362 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:42:03,366 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c6aa3d252793454fa925b76cfdce1ccff781d53f'
2024-12-15 00:42:03,422 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:42:03,426 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 422 (Bump omero-figure from `1dfb138` to `d5050d8`) c6aa3d252793454fa925b76cfdce1ccff781d53f'
2024-12-15 00:42:03,442 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:42:03,444 [ scc.git] DEBUG omero-figure | 2 +-
2024-12-15 00:42:03,444 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2024-12-15 00:42:03,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:42:03,592 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:42:03,778 [ scc.git] DEBUG Submodule path 'omero-figure': checked out 'd5050d8cd199b837ef234d08600cc4199538fb77'
2024-12-15 00:42:03,778 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:42:03,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:42:03,782 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:42:06,247 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1a537b1e20> has no local changes
2024-12-15 00:42:06,247 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 422 dependabot[bot] 'Bump omero-figure from `1dfb138` to `d5050d8`'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:42:06,320 [ scc.git] DEBUG [detached HEAD c1b97eb] merge master -Dorg -Snone
2024-12-15 00:42:06,320 [ scc.merge] INFO Repository: ome/omero-plugins
2024-12-15 00:42:06,321 [ scc.merge] INFO Already up to date.
2024-12-15 00:42:06,321 [ scc.merge] INFO
2024-12-15 00:42:06,321 [ scc.merge] INFO Merged PRs:
2024-12-15 00:42:06,321 [ scc.merge] INFO - PR 422 dependabot[bot] 'Bump omero-figure from `1dfb138` to `d5050d8`'
2024-12-15 00:42:06,321 [ scc.merge] INFO
2024-12-15 00:42:06,321 [ scc.merge] DEBUG Cleaning remote branches created for merging
2024-12-15 00:42:06,321 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'minimal-omero-client'
Synchronizing submodule url for 'omero-cli-duplicate'
Synchronizing submodule url for 'omero-cli-render'
Synchronizing submodule url for 'omero-cli-zarr'
Synchronizing submodule url for 'omero-figure'
Synchronizing submodule url for 'omero-fpbioimage'
Synchronizing submodule url for 'omero-gallery'
Synchronizing submodule url for 'omero-iviewer'
Synchronizing submodule url for 'omero-mapr'
Synchronizing submodule url for 'omero-metadata'
Synchronizing submodule url for 'omero-parade'
Synchronizing submodule url for 'omero-prometheus-tools'
Synchronizing submodule url for 'omero-rois'
Synchronizing submodule url for 'omero-signup'
Synchronizing submodule url for 'omero-test-infra'
Synchronizing submodule url for 'omero-upload'
Synchronizing submodule url for 'omero-virtual-microscope'
Synchronizing submodule url for 'omero-web-zarr'
Synchronizing submodule url for 'omero-weberror'
Synchronizing submodule url for 'omero-webtest'
Synchronizing submodule url for 'rOMERO-gateway'
Synchronizing submodule url for 'scripts'
Submodule path 'omero-figure': checked out 'fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228'
From https://github.com/ome/omero-signup
c8610db..be76813 master -> origin/master
Submodule path 'omero-signup': checked out 'be76813540a02082196cac2ffee151e3f68cb71e'
Merge all submodules using repository configuration:
base-branch: master
submodules:
scripts:
base-branch: develop
omero-web-zarr:
base-branch: main
2024-12-15 00:42:14,614 [ scc.config] DEBUG Found github.token
2024-12-15 00:42:14,616 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-12-15 00:42:14,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:42:15,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:42:15,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-12-15 00:42:15,555 [ scc.gh] DEBUG 4660 remaining from 5000 (Reset at 01:12
2024-12-15 00:42:15,556 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:15,560 [ scc.git] DEBUG Check current status
2024-12-15 00:42:15,560 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:15,564 [ scc.git] DEBUG c1b97eb merge master -Dorg -Snone
2024-12-15 00:42:15,564 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:15,613 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD)
2024-12-15 00:42:15,616 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2024-12-15 00:42:15,620 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2024-12-15 00:42:15,623 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2024-12-15 00:42:15,628 [ scc.git] DEBUG +fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e)
2024-12-15 00:42:15,631 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2024-12-15 00:42:15,634 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2024-12-15 00:42:15,637 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4)
2024-12-15 00:42:15,640 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2024-12-15 00:42:15,644 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2024-12-15 00:42:15,647 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2024-12-15 00:42:15,649 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6)
2024-12-15 00:42:15,653 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5)
2024-12-15 00:42:15,656 [ scc.git] DEBUG +be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2024-12-15 00:42:15,659 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2024-12-15 00:42:15,662 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2024-12-15 00:42:15,665 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2024-12-15 00:42:15,668 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245)
2024-12-15 00:42:15,671 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2024-12-15 00:42:15,674 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2024-12-15 00:42:15,677 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2024-12-15 00:42:15,680 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2024-12-15 00:42:15,685 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:15,685 [ scc.git] DEBUG Reading repository configuration from repositories.yml
2024-12-15 00:42:15,687 [ scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
omero-web-zarr:
base-branch: main
scripts:
base-branch: develop
2024-12-15 00:42:16,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2024-12-15 00:42:16,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:16,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:17,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:17,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:17,673 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:17,748 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2024-12-15 00:42:17,749 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:17,756 [ scc.git] DEBUG Check current status
2024-12-15 00:42:17,757 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:17,762 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0
2024-12-15 00:42:17,762 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:17,807 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:18,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None
2024-12-15 00:42:18,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:19,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:19,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:19,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:19,851 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:19,890 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:19,891 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2024-12-15 00:42:19,891 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:19,895 [ scc.git] DEBUG Check current status
2024-12-15 00:42:19,896 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:19,899 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build
2024-12-15 00:42:19,900 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:19,941 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:20,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None
2024-12-15 00:42:20,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:21,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:21,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:21,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:21,978 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:22,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:22,020 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2024-12-15 00:42:22,020 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:22,024 [ scc.git] DEBUG Check current status
2024-12-15 00:42:22,024 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:22,028 [ scc.git] DEBUG ce6e13c Merge pull request #62 from dominikl/export
2024-12-15 00:42:22,028 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:22,069 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:22,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None
2024-12-15 00:42:22,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:23,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:23,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:24,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:24,114 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:24,156 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:24,157 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2024-12-15 00:42:24,157 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:24,161 [ scc.git] DEBUG Check current status
2024-12-15 00:42:24,162 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:24,166 [ scc.git] DEBUG 11d3587 Merge pull request #165 from jburel/build
2024-12-15 00:42:24,166 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:24,209 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:24,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None
2024-12-15 00:42:25,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:25,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:25,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:26,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:26,320 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:26,361 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:26,362 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2024-12-15 00:42:26,362 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:26,367 [ scc.git] DEBUG Check current status
2024-12-15 00:42:26,367 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:26,424 [ scc.git] DEBUG fb316a7e Bump version: 7.2.0 → 7.2.1.dev0
2024-12-15 00:42:26,424 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:26,471 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:26,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None
2024-12-15 00:42:27,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:27,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:28,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:28,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:28,528 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:28,568 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:28,570 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2024-12-15 00:42:28,570 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:28,575 [ scc.git] DEBUG Check current status
2024-12-15 00:42:28,575 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:28,579 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build
2024-12-15 00:42:28,579 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:28,621 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:29,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None
2024-12-15 00:42:29,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:29,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:30,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:30,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:30,762 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:30,802 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:30,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2024-12-15 00:42:30,803 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:30,808 [ scc.git] DEBUG Check current status
2024-12-15 00:42:30,808 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:30,812 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build
2024-12-15 00:42:30,812 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:30,856 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:31,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None
2024-12-15 00:42:31,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:32,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:32,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:32,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:32,887 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:32,928 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:32,929 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2024-12-15 00:42:32,929 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:32,934 [ scc.git] DEBUG Check current status
2024-12-15 00:42:32,935 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:32,939 [ scc.git] DEBUG b4102d4 add dev
2024-12-15 00:42:32,939 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:32,984 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:33,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None
2024-12-15 00:42:33,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:34,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:34,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:35,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:35,040 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:35,079 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:35,080 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2024-12-15 00:42:35,080 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:35,084 [ scc.git] DEBUG Check current status
2024-12-15 00:42:35,084 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:35,089 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0
2024-12-15 00:42:35,089 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:35,131 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:35,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None
2024-12-15 00:42:35,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:36,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:36,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:37,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:37,170 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:37,210 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:37,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2024-12-15 00:42:37,211 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:37,216 [ scc.git] DEBUG Check current status
2024-12-15 00:42:37,216 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:37,220 [ scc.git] DEBUG 3cd120c Merge pull request #89 from jburel/build
2024-12-15 00:42:37,220 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:37,265 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:37,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None
2024-12-15 00:42:38,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:38,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:38,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:39,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:39,315 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:39,353 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:39,354 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2024-12-15 00:42:39,354 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:39,359 [ scc.git] DEBUG Check current status
2024-12-15 00:42:39,359 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:39,363 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build
2024-12-15 00:42:39,363 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:39,409 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:39,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None
2024-12-15 00:42:40,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:40,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:41,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:41,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:41,521 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:41,558 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:41,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2024-12-15 00:42:41,559 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:41,564 [ scc.git] DEBUG Check current status
2024-12-15 00:42:41,564 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:41,568 [ scc.git] DEBUG 18bccb6 Update actions to v3 and v4
2024-12-15 00:42:41,568 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:41,613 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:42,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None
2024-12-15 00:42:42,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:42,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:43,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:43,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:43,724 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:43,765 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:43,766 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2024-12-15 00:42:43,766 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:43,771 [ scc.git] DEBUG Check current status
2024-12-15 00:42:43,771 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:43,775 [ scc.git] DEBUG 5c752d5 Merge pull request #27 from ome/pre-commit-ci-update-config
2024-12-15 00:42:43,776 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:43,820 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:44,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None
2024-12-15 00:42:44,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:45,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:45,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:45,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:45,875 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:45,913 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:45,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2024-12-15 00:42:45,915 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:45,919 [ scc.git] DEBUG Check current status
2024-12-15 00:42:45,919 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:45,924 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build
2024-12-15 00:42:45,924 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:45,966 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:46,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None
2024-12-15 00:42:46,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:47,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:47,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:48,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:48,027 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:48,068 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:48,069 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2024-12-15 00:42:48,069 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:48,074 [ scc.git] DEBUG Check current status
2024-12-15 00:42:48,074 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:48,079 [ scc.git] DEBUG cda3ec6 Merge pull request #70 from jburel/toml_support
2024-12-15 00:42:48,079 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:48,124 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:48,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2024-12-15 00:42:48,457 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2024-12-15 00:42:48,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None
2024-12-15 00:42:49,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:49,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:49,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:50,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:50,353 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:50,396 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:50,396 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2024-12-15 00:42:50,397 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:50,402 [ scc.git] DEBUG Check current status
2024-12-15 00:42:50,402 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:50,407 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build
2024-12-15 00:42:50,408 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:50,453 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:50,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None
2024-12-15 00:42:51,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:51,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:52,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:52,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:52,515 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:52,557 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:52,558 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2024-12-15 00:42:52,558 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:52,563 [ scc.git] DEBUG Check current status
2024-12-15 00:42:52,563 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:52,568 [ scc.git] DEBUG deab817 update setup-python to v4
2024-12-15 00:42:52,568 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:52,614 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:52,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None
2024-12-15 00:42:53,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:53,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:54,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:54,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:54,716 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:54,757 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:54,759 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2024-12-15 00:42:54,759 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:54,765 [ scc.git] DEBUG Check current status
2024-12-15 00:42:54,765 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:54,771 [ scc.git] DEBUG 67bb245 Bump version: 0.1.1 → 0.1.2.dev0
2024-12-15 00:42:54,771 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:54,817 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:54,818 [ scc.git] DEBUG Repository configuration:
base-branch: main
2024-12-15 00:42:55,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None
2024-12-15 00:42:55,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:56,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:56,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:56,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:56,866 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:56,911 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:56,912 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2024-12-15 00:42:56,912 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:56,918 [ scc.git] DEBUG Check current status
2024-12-15 00:42:56,918 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:56,923 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build
2024-12-15 00:42:56,923 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:56,968 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:57,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2024-12-15 00:42:57,279 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2024-12-15 00:42:57,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None
2024-12-15 00:42:58,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:42:58,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:42:58,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:42:59,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:42:59,216 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:42:59,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:42:59,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2024-12-15 00:42:59,255 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:42:59,259 [ scc.git] DEBUG Check current status
2024-12-15 00:42:59,260 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:42:59,264 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build
2024-12-15 00:42:59,264 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:42:59,306 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:42:59,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2024-12-15 00:42:59,617 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2024-12-15 00:42:59,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None
2024-12-15 00:43:00,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:43:00,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:43:01,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:43:01,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:43:01,563 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:43:01,603 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:43:01,604 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2024-12-15 00:43:01,604 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:43:01,609 [ scc.git] DEBUG Check current status
2024-12-15 00:43:01,609 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:43:01,614 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2024-12-15 00:43:01,614 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:43:01,659 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:43:02,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None
2024-12-15 00:43:02,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:43:02,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:43:03,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:43:03,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:43:03,723 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:43:03,767 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:43:03,769 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2024-12-15 00:43:03,769 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-12-15 00:43:03,776 [ scc.git] DEBUG Check current status
2024-12-15 00:43:03,777 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:43:03,783 [ scc.git] DEBUG 312afbe Bump version: 5.8.3 → 5.8.4.dev0
2024-12-15 00:43:03,783 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:43:03,829 [ scc.config] DEBUG Found remote.origin.url
2024-12-15 00:43:03,830 [ scc.git] DEBUG Repository configuration:
base-branch: develop
2024-12-15 00:43:04,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2024-12-15 00:43:04,147 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2024-12-15 00:43:04,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None
2024-12-15 00:43:04,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-12-15 00:43:05,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-12-15 00:43:05,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-12-15 00:43:06,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-12-15 00:43:06,053 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:43:06,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:43:06,093 [ scc.git] DEBUG Resetting...
2024-12-15 00:43:06,093 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-12-15 00:43:06,103 [ scc.git] DEBUG HEAD is now at c1b97eb merge master -Dorg -Snone
2024-12-15 00:43:06,103 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2024-12-15 00:43:06,163 [ scc.git] DEBUG Submodule path 'omero-figure': checked out 'd5050d8cd199b837ef234d08600cc4199538fb77'
2024-12-15 00:43:06,197 [ scc.git] DEBUG Submodule path 'omero-signup': checked out 'c8610dba25f39870a09fa5401c735fb3be85a319'
2024-12-15 00:43:06,222 [ scc.git] DEBUG Check current status
2024-12-15 00:43:06,223 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-12-15 00:43:06,227 [ scc.git] DEBUG c1b97eb merge master -Dorg -Snone
2024-12-15 00:43:06,228 [ scc.git] DEBUG Calling 'git submodule status'
2024-12-15 00:43:06,274 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD)
2024-12-15 00:43:06,299 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2024-12-15 00:43:06,303 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2024-12-15 00:43:06,306 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2024-12-15 00:43:06,342 [ scc.git] DEBUG d5050d8cd199b837ef234d08600cc4199538fb77 omero-figure (v7.1.0-248-gd5050d8c)
2024-12-15 00:43:06,345 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2024-12-15 00:43:06,349 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2024-12-15 00:43:06,363 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4)
2024-12-15 00:43:06,367 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2024-12-15 00:43:06,370 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2024-12-15 00:43:06,373 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2024-12-15 00:43:06,375 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6)
2024-12-15 00:43:06,379 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5)
2024-12-15 00:43:06,382 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db)
2024-12-15 00:43:06,385 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2024-12-15 00:43:06,388 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2024-12-15 00:43:06,391 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2024-12-15 00:43:06,394 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245)
2024-12-15 00:43:06,397 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2024-12-15 00:43:06,399 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2024-12-15 00:43:06,402 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2024-12-15 00:43:06,406 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2024-12-15 00:43:06,407 [ scc.merge] INFO Merging Pull Request(s) based on master
2024-12-15 00:43:06,407 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2024-12-15 00:43:06,407 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2024-12-15 00:43:06,407 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2024-12-15 00:43:06,407 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2024-12-15 00:43:06,407 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2024-12-15 00:43:06,408 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:43:06,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2024-12-15 00:43:07,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/422 HTTP/1.1" 200 None
2024-12-15 00:43:07,118 [ scc.repo] DEBUG # ... Include label: dependencies
2024-12-15 00:43:07,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/c6aa3d252793454fa925b76cfdce1ccff781d53f HTTP/1.1" 200 None
2024-12-15 00:43:08,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/c6aa3d252793454fa925b76cfdce1ccff781d53f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:08,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/c6aa3d252793454fa925b76cfdce1ccff781d53f HTTP/1.1" 200 None
2024-12-15 00:43:09,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/c6aa3d252793454fa925b76cfdce1ccff781d53f?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:09,150 [ scc.repo] DEBUG - PR 422 dependabot[bot] 'Bump omero-figure from `1dfb138` to `d5050d8`'
2024-12-15 00:43:09,151 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:43:09,151 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:09,151 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:09,157 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:43:09,162 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:43:09,162 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:43:09,167 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:43:09,172 [ scc.git] DEBUG Already up to date.
2024-12-15 00:43:09,172 [ scc.git] DEBUG Calling 'git fetch origin pull/422/head'
2024-12-15 00:43:09,471 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2024-12-15 00:43:09,472 [ scc.git] DEBUG * branch refs/pull/422/head -> FETCH_HEAD
2024-12-15 00:43:09,477 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:43:09,478 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:09,478 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:09,483 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c6aa3d252793454fa925b76cfdce1ccff781d53f'
2024-12-15 00:43:09,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:09,494 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 422 (Bump omero-figure from `1dfb138` to `d5050d8`) c6aa3d252793454fa925b76cfdce1ccff781d53f'
2024-12-15 00:43:09,499 [ scc.git] DEBUG Already up to date.
2024-12-15 00:43:09,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:09,635 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:43:09,687 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:09,687 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:09,693 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:43:10,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2
2024-12-15 00:43:10,051 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:43:10,051 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2024-12-15 00:43:10,052 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:10,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:10,057 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:43:10,062 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:43:10,062 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:43:10,068 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:43:10,075 [ scc.git] DEBUG Already up to date.
2024-12-15 00:43:10,075 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:43:10,075 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:10,075 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:10,081 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:43:10,121 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:10,121 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:10,126 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:43:10,165 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:43:10,171 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff88f61e50> has no local changes
2024-12-15 00:43:10,172 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/minimal-omero-client
Already up to date.
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:43:10,180 [ scc.git] DEBUG [detached HEAD 486ce35] merge master -Dorg -Ssuccess-only
2024-12-15 00:43:10,180 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:43:10,181 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:43:10,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None
2024-12-15 00:43:10,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None
2024-12-15 00:43:11,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None
2024-12-15 00:43:11,455 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:43:11,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2024-12-15 00:43:11,455 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:11,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:11,461 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:43:11,466 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:43:11,466 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:43:11,471 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:43:11,477 [ scc.git] DEBUG Already up to date.
2024-12-15 00:43:11,477 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:43:11,477 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:11,478 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:11,483 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:43:11,525 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:11,525 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:11,531 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:43:11,571 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:43:11,577 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff891d4850> has no local changes
2024-12-15 00:43:11,577 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:43:11,585 [ scc.git] DEBUG [detached HEAD 8a38e76] merge master -Dorg -Ssuccess-only
2024-12-15 00:43:11,585 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:43:11,586 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:43:11,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None
2024-12-15 00:43:12,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None
2024-12-15 00:43:12,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None
2024-12-15 00:43:13,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a HTTP/1.1" 200 None
2024-12-15 00:43:13,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:14,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:43:14,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a HTTP/1.1" 200 None
2024-12-15 00:43:15,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/75fc40970592eca2babd405b65a372f328fb679a?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:15,296 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate'
2024-12-15 00:43:15,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None
2024-12-15 00:43:16,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None
2024-12-15 00:43:16,219 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:43:16,220 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2024-12-15 00:43:16,220 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:16,220 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:16,225 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:43:16,231 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:43:16,231 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:43:16,236 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:43:16,242 [ scc.git] DEBUG Already up to date.
2024-12-15 00:43:16,242 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head'
2024-12-15 00:43:16,681 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render
2024-12-15 00:43:16,681 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD
2024-12-15 00:43:16,686 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:43:16,686 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:16,686 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:16,692 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...75fc40970592eca2babd405b65a372f328fb679a'
2024-12-15 00:43:16,698 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:16,703 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 75fc40970592eca2babd405b65a372f328fb679a'
2024-12-15 00:43:16,720 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:43:16,723 [ scc.git] DEBUG src/omero_cli_render.py | 159 +++++++++++++++++++++++++++---------------------
2024-12-15 00:43:16,723 [ scc.git] DEBUG 1 file changed, 89 insertions(+), 70 deletions(-)
2024-12-15 00:43:16,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:16,873 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:43:16,915 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:16,915 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:16,921 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:43:16,960 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:43:16,966 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff886d4f40> has no local changes
2024-12-15 00:43:16,966 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:43:16,974 [ scc.git] DEBUG [detached HEAD 9537f4f] merge master -Dorg -Ssuccess-only
2024-12-15 00:43:16,975 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:43:16,975 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:43:17,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None
2024-12-15 00:43:17,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None
2024-12-15 00:43:18,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/147 HTTP/1.1" 200 None
2024-12-15 00:43:18,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/147/comments HTTP/1.1" 200 None
2024-12-15 00:43:19,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef HTTP/1.1" 200 None
2024-12-15 00:43:19,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:20,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:43:20,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef HTTP/1.1" 200 None
2024-12-15 00:43:21,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/a14f62a940f4974a305b3f5858049ee493b898ef?per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:21,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef HTTP/1.1" 200 None
2024-12-15 00:43:22,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef/status HTTP/1.1" 200 None
2024-12-15 00:43:22,079 [ scc.repo] DEBUG - PR 147 will-moore 'Name option'
2024-12-15 00:43:22,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None
2024-12-15 00:43:23,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None
2024-12-15 00:43:23,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None
2024-12-15 00:43:24,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/553b35f498764274f8dc882fb54c7e0a30fb6737 HTTP/1.1" 200 None
2024-12-15 00:43:24,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/553b35f498764274f8dc882fb54c7e0a30fb6737/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:25,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/553b35f498764274f8dc882fb54c7e0a30fb6737 HTTP/1.1" 200 None
2024-12-15 00:43:25,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/553b35f498764274f8dc882fb54c7e0a30fb6737?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:25,645 [ scc.repo] DEBUG - PR 123 will-moore 'Support export of Fileset:ID'
2024-12-15 00:43:26,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/102 HTTP/1.1" 200 None
2024-12-15 00:43:26,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/102/comments HTTP/1.1" 200 None
2024-12-15 00:43:27,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f22d4074b7c458ad24320cf5a6f8adb9e686aa44 HTTP/1.1" 200 None
2024-12-15 00:43:27,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f22d4074b7c458ad24320cf5a6f8adb9e686aa44/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:27,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f22d4074b7c458ad24320cf5a6f8adb9e686aa44 HTTP/1.1" 200 None
2024-12-15 00:43:28,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f22d4074b7c458ad24320cf5a6f8adb9e686aa44?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:28,430 [ scc.repo] DEBUG - PR 102 will-moore 'Zarr export tests'
2024-12-15 00:43:28,430 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:43:28,430 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2024-12-15 00:43:28,430 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:28,430 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:28,436 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:43:28,442 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:43:28,442 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:43:28,448 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:43:28,454 [ scc.git] DEBUG Already up to date.
2024-12-15 00:43:28,454 [ scc.git] DEBUG Calling 'git fetch origin pull/102/head'
2024-12-15 00:43:28,834 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2024-12-15 00:43:28,834 [ scc.git] DEBUG * branch refs/pull/102/head -> FETCH_HEAD
2024-12-15 00:43:28,839 [ scc.git] DEBUG Calling 'git fetch origin pull/123/head'
2024-12-15 00:43:29,149 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2024-12-15 00:43:29,150 [ scc.git] DEBUG * branch refs/pull/123/head -> FETCH_HEAD
2024-12-15 00:43:29,154 [ scc.git] DEBUG Calling 'git fetch origin pull/147/head'
2024-12-15 00:43:29,655 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2024-12-15 00:43:29,655 [ scc.git] DEBUG * branch refs/pull/147/head -> FETCH_HEAD
2024-12-15 00:43:29,659 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:43:29,660 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:29,660 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:29,665 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f22d4074b7c458ad24320cf5a6f8adb9e686aa44'
2024-12-15 00:43:29,672 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:29,677 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 102 (Zarr export tests) f22d4074b7c458ad24320cf5a6f8adb9e686aa44'
2024-12-15 00:43:29,770 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py
2024-12-15 00:43:29,771 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py
2024-12-15 00:43:29,771 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py
2024-12-15 00:43:29,771 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:43:29,771 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:43:29,777 [ scc.git] DEBUG Calling 'git reset --hard 11d35873542022d9638ede115d0dfab4652f8e62'
2024-12-15 00:43:29,784 [ scc.git] DEBUG HEAD is now at 11d3587 Merge pull request #165 from jburel/build
2024-12-15 00:43:29,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:29,949 [ scc.git] DEBUG Calling 'git merge-base 11d35873542022d9638ede115d0dfab4652f8e62 f22d4074b7c458ad24320cf5a6f8adb9e686aa44'
2024-12-15 00:43:29,958 [ scc.git] DEBUG Calling 'git diff --name-only 782a1cd0077bcc2871f21e9f0acdc25ae7745243..11d35873542022d9638ede115d0dfab4652f8e62'
2024-12-15 00:43:29,964 [ scc.git] INFO - PR 102 will-moore 'Zarr export tests'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_zarr/raw_pixels.py
--conflicts
2024-12-15 00:43:29,968 [ scc.config] DEBUG Found github.token
2024-12-15 00:43:29,969 [ scc.git] DEBUG Not adding comment to issue #102, already --conflicts.
2024-12-15 00:43:29,969 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...553b35f498764274f8dc882fb54c7e0a30fb6737'
2024-12-15 00:43:29,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:29,980 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 123 (Support export of Fileset:ID) 553b35f498764274f8dc882fb54c7e0a30fb6737'
2024-12-15 00:43:30,013 [ scc.git] DEBUG Auto-merging .isort.cfg
2024-12-15 00:43:30,013 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .isort.cfg
2024-12-15 00:43:30,013 [ scc.git] DEBUG Auto-merging setup.py
2024-12-15 00:43:30,014 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py
2024-12-15 00:43:30,014 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py
2024-12-15 00:43:30,014 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py
2024-12-15 00:43:30,014 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py
2024-12-15 00:43:30,014 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:43:30,014 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:43:30,020 [ scc.git] DEBUG Calling 'git reset --hard 11d35873542022d9638ede115d0dfab4652f8e62'
2024-12-15 00:43:30,026 [ scc.git] DEBUG HEAD is now at 11d3587 Merge pull request #165 from jburel/build
2024-12-15 00:43:30,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:30,335 [ scc.git] DEBUG Calling 'git merge-base 11d35873542022d9638ede115d0dfab4652f8e62 553b35f498764274f8dc882fb54c7e0a30fb6737'
2024-12-15 00:43:30,342 [ scc.git] DEBUG Calling 'git diff --name-only eff38d0408f9d50de13b28dfe09e4382965e203f..11d35873542022d9638ede115d0dfab4652f8e62'
2024-12-15 00:43:30,347 [ scc.git] INFO - PR 123 will-moore 'Support export of Fileset:ID'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- PR #102 will-moore 'Zarr export tests'
- src/omero_zarr/raw_pixels.py
- Upstream changes
- .isort.cfg
- src/omero_zarr/raw_pixels.py
--conflicts
2024-12-15 00:43:30,351 [ scc.config] DEBUG Found github.token
2024-12-15 00:43:30,352 [ scc.git] DEBUG Not adding comment to issue #123, already --conflicts.
2024-12-15 00:43:30,352 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a14f62a940f4974a305b3f5858049ee493b898ef'
2024-12-15 00:43:30,357 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:30,362 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 147 (Name option) a14f62a940f4974a305b3f5858049ee493b898ef'
2024-12-15 00:43:30,374 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py
2024-12-15 00:43:30,374 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py
2024-12-15 00:43:30,375 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:43:30,378 [ scc.git] DEBUG README.rst | 30 ++++++++++++++++++------------
2024-12-15 00:43:30,378 [ scc.git] DEBUG src/omero_zarr/cli.py | 9 +++++++++
2024-12-15 00:43:30,378 [ scc.git] DEBUG src/omero_zarr/masks.py | 4 ++--
2024-12-15 00:43:30,378 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 28 +++++++++++++++++++++++-----
2024-12-15 00:43:30,378 [ scc.git] DEBUG src/omero_zarr/util.py | 2 +-
2024-12-15 00:43:30,378 [ scc.git] DEBUG 5 files changed, 53 insertions(+), 20 deletions(-)
2024-12-15 00:43:30,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:30,717 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:43:30,756 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:30,757 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:30,762 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:43:30,830 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:43:30,842 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff88f61e80> has no local changes
2024-12-15 00:43:30,843 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 147 will-moore 'Name option'
Conflicting PRs (not included):
- PR 102 will-moore 'Zarr export tests'
- PR 123 will-moore 'Support export of Fileset:ID'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:43:30,954 [ scc.git] DEBUG [detached HEAD 27f6435] merge master -Dorg -Ssuccess-only
2024-12-15 00:43:30,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:43:30,955 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:43:31,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None
2024-12-15 00:43:31,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/605 HTTP/1.1" 200 None
2024-12-15 00:43:32,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/600 HTTP/1.1" 200 None
2024-12-15 00:43:32,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/600/comments HTTP/1.1" 200 None
2024-12-15 00:43:32,662 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:43:32,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2024-12-15 00:43:32,662 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:32,662 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:32,668 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:43:32,672 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:43:32,673 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:43:32,678 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:43:32,690 [ scc.git] DEBUG Updating d5050d8c..fb316a7e
2024-12-15 00:43:33,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/602 HTTP/1.1" 200 None
2024-12-15 00:43:33,368 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:43:33,368 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:33,368 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:33,374 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:43:33,413 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:33,413 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:33,418 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:43:33,457 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:43:33,464 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff88682b20> has no local changes
2024-12-15 00:43:33,464 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-figure
Excluded PRs:
- PR 605 Tom-TBT 'Colorbar feature' (user: Tom-TBT)
- PR 600 Rdornier 'Label on rois' (user: Rdornier)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating d5050d8c..fb316a7e
Previously merged:
- PR 602 will-moore 'Changelog 7.2.0'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:43:33,473 [ scc.git] DEBUG [detached HEAD 7258a5f2] merge master -Dorg -Ssuccess-only
2024-12-15 00:43:33,473 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:43:33,473 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:43:33,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None
2024-12-15 00:43:34,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None
2024-12-15 00:43:34,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None
2024-12-15 00:43:35,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None
2024-12-15 00:43:35,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:36,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None
2024-12-15 00:43:36,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:36,723 [ scc.repo] DEBUG - PR 18 jburel 'default size z value'
2024-12-15 00:43:36,723 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:43:36,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2024-12-15 00:43:36,723 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:36,723 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:36,729 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:43:36,735 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:43:36,736 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:43:36,741 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:43:36,748 [ scc.git] DEBUG Already up to date.
2024-12-15 00:43:36,748 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head'
2024-12-15 00:43:37,064 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage
2024-12-15 00:43:37,064 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD
2024-12-15 00:43:37,068 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:43:37,069 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:37,069 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:37,074 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337'
2024-12-15 00:43:37,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:37,085 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337'
2024-12-15 00:43:37,094 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py
2024-12-15 00:43:37,095 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:43:37,097 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++
2024-12-15 00:43:37,097 [ scc.git] DEBUG 1 file changed, 2 insertions(+)
2024-12-15 00:43:37,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:37,247 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:43:37,287 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:37,287 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:37,292 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:43:37,329 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:43:37,335 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff886c7e50> has no local changes
2024-12-15 00:43:37,335 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:43:37,344 [ scc.git] DEBUG [detached HEAD c66bae0] merge master -Dorg -Ssuccess-only
2024-12-15 00:43:37,345 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:43:37,345 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:43:37,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None
2024-12-15 00:43:38,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None
2024-12-15 00:43:38,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None
2024-12-15 00:43:38,695 [ scc.repo] DEBUG # ... Include label: dependencies
2024-12-15 00:43:39,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None
2024-12-15 00:43:39,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:40,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:43:40,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None
2024-12-15 00:43:41,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:41,153 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2024-12-15 00:43:41,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None
2024-12-15 00:43:41,602 [ scc.repo] DEBUG # ... Include label: dependencies
2024-12-15 00:43:42,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None
2024-12-15 00:43:42,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:43,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:43:43,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None
2024-12-15 00:43:44,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:44,068 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2024-12-15 00:43:44,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None
2024-12-15 00:43:44,538 [ scc.repo] DEBUG # ... Include label: dependencies
2024-12-15 00:43:45,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None
2024-12-15 00:43:45,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:46,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:43:46,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None
2024-12-15 00:43:46,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:46,969 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2024-12-15 00:43:47,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None
2024-12-15 00:43:47,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None
2024-12-15 00:43:47,911 [ scc.repo] DEBUG # ... Include label: dependencies
2024-12-15 00:43:48,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None
2024-12-15 00:43:48,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:49,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:43:49,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None
2024-12-15 00:43:50,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:50,335 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2024-12-15 00:43:50,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None
2024-12-15 00:43:50,863 [ scc.repo] DEBUG # ... Include label: dependencies
2024-12-15 00:43:51,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None
2024-12-15 00:43:51,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:52,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:43:52,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None
2024-12-15 00:43:53,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:53,405 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents'
2024-12-15 00:43:53,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None
2024-12-15 00:43:53,860 [ scc.repo] DEBUG # ... Include label: dependencies
2024-12-15 00:43:54,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None
2024-12-15 00:43:54,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:43:55,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:43:55,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None
2024-12-15 00:43:56,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:43:56,264 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2024-12-15 00:43:56,264 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:43:56,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2024-12-15 00:43:56,264 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:56,264 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:56,271 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:43:56,275 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:43:56,276 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:43:56,281 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:43:56,286 [ scc.git] DEBUG Already up to date.
2024-12-15 00:43:56,286 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head'
2024-12-15 00:43:56,604 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2024-12-15 00:43:56,604 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD
2024-12-15 00:43:56,609 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head'
2024-12-15 00:43:56,905 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2024-12-15 00:43:56,905 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD
2024-12-15 00:43:56,909 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head'
2024-12-15 00:43:57,193 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2024-12-15 00:43:57,193 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD
2024-12-15 00:43:57,197 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head'
2024-12-15 00:43:57,480 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2024-12-15 00:43:57,480 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD
2024-12-15 00:43:57,485 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head'
2024-12-15 00:43:57,806 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2024-12-15 00:43:57,806 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD
2024-12-15 00:43:57,811 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head'
2024-12-15 00:43:58,107 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2024-12-15 00:43:58,107 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD
2024-12-15 00:43:58,111 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:43:58,111 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:43:58,111 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:58,117 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2024-12-15 00:43:58,122 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:58,126 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2024-12-15 00:43:58,329 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:43:58,334 [ scc.git] DEBUG package-lock.json | 12 ++++++------
2024-12-15 00:43:58,334 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-)
2024-12-15 00:43:58,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:58,474 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b'
2024-12-15 00:43:58,480 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:58,484 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b'
2024-12-15 00:43:58,565 [ scc.git] DEBUG Auto-merging package-lock.json
2024-12-15 00:43:58,565 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:43:58,571 [ scc.git] DEBUG package-lock.json | 625 +++---------------------------------------------------
2024-12-15 00:43:58,571 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-)
2024-12-15 00:43:58,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:58,858 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2024-12-15 00:43:58,902 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:58,908 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2024-12-15 00:43:59,014 [ scc.git] DEBUG Auto-merging package-lock.json
2024-12-15 00:43:59,014 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2024-12-15 00:43:59,014 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:43:59,015 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:43:59,021 [ scc.git] DEBUG Calling 'git reset --hard cceb78e371a2fdb8025ead7ebf64d60e05cd4a81'
2024-12-15 00:43:59,028 [ scc.git] DEBUG HEAD is now at cceb78e merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents)
2024-12-15 00:43:59,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:59,243 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2024-12-15 00:43:59,249 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2024-12-15 00:43:59,255 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
--conflicts
2024-12-15 00:43:59,261 [ scc.config] DEBUG Found github.token
2024-12-15 00:43:59,261 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts.
2024-12-15 00:43:59,261 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2024-12-15 00:43:59,267 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:59,273 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2024-12-15 00:43:59,406 [ scc.git] DEBUG Auto-merging package-lock.json
2024-12-15 00:43:59,407 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:43:59,412 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++-----
2024-12-15 00:43:59,412 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-)
2024-12-15 00:43:59,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:43:59,626 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c'
2024-12-15 00:43:59,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:43:59,637 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c'
2024-12-15 00:43:59,693 [ scc.git] DEBUG Auto-merging package-lock.json
2024-12-15 00:43:59,693 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:43:59,698 [ scc.git] DEBUG package-lock.json | 6 +++---
2024-12-15 00:43:59,698 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2024-12-15 00:44:00,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:00,012 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2024-12-15 00:44:00,102 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:00,108 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2024-12-15 00:44:00,194 [ scc.git] DEBUG Auto-merging package-lock.json
2024-12-15 00:44:00,195 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2024-12-15 00:44:00,195 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:44:00,195 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:44:00,202 [ scc.git] DEBUG Calling 'git reset --hard f8cad5d2941a29cc75ed5421543b79283fa81c4b'
2024-12-15 00:44:00,209 [ scc.git] DEBUG HEAD is now at f8cad5d merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6)
2024-12-15 00:44:00,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:00,393 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2024-12-15 00:44:00,399 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2024-12-15 00:44:00,404 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
- PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- package-lock.json
- PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- package-lock.json
- PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
- package-lock.json
--conflicts
2024-12-15 00:44:00,409 [ scc.config] DEBUG Found github.token
2024-12-15 00:44:00,409 [ scc.git] DEBUG Adding comment to issue #118.
2024-12-15 00:44:01,203 [urllib3.conn] DEBUG https://api.github.com:443 "POST /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 201 2394
2024-12-15 00:44:01,205 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:44:01,245 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:01,245 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:01,250 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:44:01,289 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:44:01,297 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff886c9f40> has no local changes
2024-12-15 00:44:01,297 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:44:01,307 [ scc.git] DEBUG [detached HEAD 16c0c17] merge master -Dorg -Ssuccess-only
2024-12-15 00:44:01,307 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:44:01,307 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:44:01,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None
2024-12-15 00:44:02,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/499 HTTP/1.1" 200 None
2024-12-15 00:44:02,243 [ scc.repo] DEBUG # ... Include label: dependencies
2024-12-15 00:44:02,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None
2024-12-15 00:44:03,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:03,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:44:04,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None
2024-12-15 00:44:04,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:04,843 [ scc.repo] DEBUG - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2024-12-15 00:44:05,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None
2024-12-15 00:44:05,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None
2024-12-15 00:44:06,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None
2024-12-15 00:44:06,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None
2024-12-15 00:44:07,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None
2024-12-15 00:44:07,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:08,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:44:08,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None
2024-12-15 00:44:09,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:09,166 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip'
2024-12-15 00:44:09,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None
2024-12-15 00:44:10,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None
2024-12-15 00:44:10,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None
2024-12-15 00:44:11,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:11,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:44:11,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None
2024-12-15 00:44:12,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:12,357 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure'
2024-12-15 00:44:12,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None
2024-12-15 00:44:13,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None
2024-12-15 00:44:13,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None
2024-12-15 00:44:14,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:14,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None
2024-12-15 00:44:15,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:15,202 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix'
2024-12-15 00:44:15,203 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:44:15,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2024-12-15 00:44:15,203 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:15,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:15,208 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:44:15,213 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:44:15,213 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:44:15,219 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:44:15,224 [ scc.git] DEBUG Already up to date.
2024-12-15 00:44:15,224 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head'
2024-12-15 00:44:16,490 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2024-12-15 00:44:16,490 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD
2024-12-15 00:44:16,495 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head'
2024-12-15 00:44:17,043 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2024-12-15 00:44:17,043 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD
2024-12-15 00:44:17,048 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head'
2024-12-15 00:44:17,368 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2024-12-15 00:44:17,368 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD
2024-12-15 00:44:17,372 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head'
2024-12-15 00:44:17,660 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2024-12-15 00:44:17,661 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD
2024-12-15 00:44:17,665 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:44:17,665 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:17,665 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:17,670 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30'
2024-12-15 00:44:17,677 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:17,681 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30'
2024-12-15 00:44:17,842 [ scc.git] DEBUG Auto-merging src/model/image_info.js
2024-12-15 00:44:17,844 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:44:17,847 [ scc.git] DEBUG src/model/image_info.js | 7 ++++---
2024-12-15 00:44:17,847 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++-
2024-12-15 00:44:17,847 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-)
2024-12-15 00:44:18,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:18,006 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd'
2024-12-15 00:44:18,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:18,020 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd'
2024-12-15 00:44:18,691 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py
2024-12-15 00:44:18,691 [ scc.git] DEBUG Auto-merging src/app/context.js
2024-12-15 00:44:18,691 [ scc.git] DEBUG Auto-merging src/utils/constants.js
2024-12-15 00:44:18,691 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js
2024-12-15 00:44:18,692 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:44:18,696 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++-
2024-12-15 00:44:18,696 [ scc.git] DEBUG src/app/context.js | 6 +-
2024-12-15 00:44:18,696 [ scc.git] DEBUG src/app/header.html | 5 +
2024-12-15 00:44:18,696 [ scc.git] DEBUG src/app/header.js | 45 ++++++++-
2024-12-15 00:44:18,696 [ scc.git] DEBUG src/utils/constants.js | 6 ++
2024-12-15 00:44:18,696 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++
2024-12-15 00:44:18,696 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-)
2024-12-15 00:44:18,697 [ scc.git] DEBUG create mode 100644 src/utils/figure.js
2024-12-15 00:44:18,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:18,832 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9'
2024-12-15 00:44:18,841 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:18,846 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9'
2024-12-15 00:44:19,114 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js
2024-12-15 00:44:19,115 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:44:19,119 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +-
2024-12-15 00:44:19,119 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++
2024-12-15 00:44:19,119 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-)
2024-12-15 00:44:19,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:19,282 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc'
2024-12-15 00:44:19,291 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:19,296 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc'
2024-12-15 00:44:19,410 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:44:19,420 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++---------------------------
2024-12-15 00:44:19,420 [ scc.git] DEBUG package.json | 2 +-
2024-12-15 00:44:19,420 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-)
2024-12-15 00:44:19,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:19,672 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:44:19,713 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:19,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:19,719 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:44:19,759 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:44:19,769 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff8862b610> has no local changes
2024-12-15 00:44:19,770 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Already up to date.
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:44:19,782 [ scc.git] DEBUG [detached HEAD 25cf5f8] merge master -Dorg -Ssuccess-only
2024-12-15 00:44:19,783 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:44:19,783 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:44:20,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2024-12-15 00:44:20,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2024-12-15 00:44:21,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2024-12-15 00:44:21,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2024-12-15 00:44:22,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:22,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2024-12-15 00:44:23,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:23,134 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2024-12-15 00:44:23,134 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:44:23,134 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2024-12-15 00:44:23,135 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:23,135 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:23,141 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:44:23,145 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:44:23,145 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:44:23,150 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:44:23,156 [ scc.git] DEBUG Already up to date.
2024-12-15 00:44:23,156 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2024-12-15 00:44:23,749 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2024-12-15 00:44:23,749 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2024-12-15 00:44:23,754 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:44:23,754 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:23,754 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:23,759 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2024-12-15 00:44:23,765 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:23,770 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2024-12-15 00:44:23,780 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:44:23,783 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2024-12-15 00:44:23,783 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2024-12-15 00:44:23,783 [ scc.git] DEBUG requirements.txt | 2 +-
2024-12-15 00:44:23,783 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2024-12-15 00:44:23,783 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2024-12-15 00:44:23,783 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2024-12-15 00:44:23,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:23,914 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:44:23,954 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:23,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:23,960 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:44:23,998 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:44:24,005 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff8863dbb0> has no local changes
2024-12-15 00:44:24,005 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:44:24,013 [ scc.git] DEBUG [detached HEAD 7c8016f] merge master -Dorg -Ssuccess-only
2024-12-15 00:44:24,013 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:44:24,013 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:44:24,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2024-12-15 00:44:24,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2024-12-15 00:44:25,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2024-12-15 00:44:25,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2024-12-15 00:44:26,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:26,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2024-12-15 00:44:27,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:27,244 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2024-12-15 00:44:27,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2024-12-15 00:44:28,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2024-12-15 00:44:28,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2024-12-15 00:44:29,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:29,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2024-12-15 00:44:30,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:30,259 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2024-12-15 00:44:30,259 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:44:30,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2024-12-15 00:44:30,260 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:30,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:30,266 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:44:30,270 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:44:30,271 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:44:30,276 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:44:30,281 [ scc.git] DEBUG Already up to date.
2024-12-15 00:44:30,281 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2024-12-15 00:44:30,736 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2024-12-15 00:44:30,736 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2024-12-15 00:44:30,740 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2024-12-15 00:44:31,211 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2024-12-15 00:44:31,211 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2024-12-15 00:44:31,217 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:44:31,217 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:31,217 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:31,223 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2024-12-15 00:44:31,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:31,234 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2024-12-15 00:44:31,340 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2024-12-15 00:44:31,340 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2024-12-15 00:44:31,340 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2024-12-15 00:44:31,340 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2024-12-15 00:44:31,340 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:44:31,341 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:44:31,347 [ scc.git] DEBUG Calling 'git reset --hard 3cd120cf6f10f71421a4db91fa87baba865c7997'
2024-12-15 00:44:31,354 [ scc.git] DEBUG HEAD is now at 3cd120c Merge pull request #89 from jburel/build
2024-12-15 00:44:31,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:31,487 [ scc.git] DEBUG Calling 'git merge-base 3cd120cf6f10f71421a4db91fa87baba865c7997 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2024-12-15 00:44:31,495 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..3cd120cf6f10f71421a4db91fa87baba865c7997'
2024-12-15 00:44:31,530 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2024-12-15 00:44:31,537 [ scc.config] DEBUG Found github.token
2024-12-15 00:44:31,537 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2024-12-15 00:44:31,537 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2024-12-15 00:44:31,545 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:31,550 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2024-12-15 00:44:31,665 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2024-12-15 00:44:31,665 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2024-12-15 00:44:31,665 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2024-12-15 00:44:31,665 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:44:31,665 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:44:31,672 [ scc.git] DEBUG Calling 'git reset --hard 3cd120cf6f10f71421a4db91fa87baba865c7997'
2024-12-15 00:44:31,680 [ scc.git] DEBUG HEAD is now at 3cd120c Merge pull request #89 from jburel/build
2024-12-15 00:44:31,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:31,897 [ scc.git] DEBUG Calling 'git merge-base 3cd120cf6f10f71421a4db91fa87baba865c7997 78e55539b68e351ed5ef202854718b49a37729a7'
2024-12-15 00:44:31,905 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..3cd120cf6f10f71421a4db91fa87baba865c7997'
2024-12-15 00:44:31,910 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2024-12-15 00:44:31,915 [ scc.config] DEBUG Found github.token
2024-12-15 00:44:31,916 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2024-12-15 00:44:31,916 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:44:31,955 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:31,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:31,960 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:44:31,998 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:44:32,007 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff885e5880> has no local changes
2024-12-15 00:44:32,007 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Already up to date.
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:44:32,015 [ scc.git] DEBUG [detached HEAD ea690bf] merge master -Dorg -Ssuccess-only
2024-12-15 00:44:32,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:44:32,016 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:44:32,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2024-12-15 00:44:32,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2024-12-15 00:44:33,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2024-12-15 00:44:33,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2024-12-15 00:44:34,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2024-12-15 00:44:34,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2024-12-15 00:44:35,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2024-12-15 00:44:35,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2024-12-15 00:44:35,791 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:44:35,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2024-12-15 00:44:35,792 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:35,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:35,797 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:44:35,802 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:44:35,802 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:44:35,807 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:44:35,812 [ scc.git] DEBUG Already up to date.
2024-12-15 00:44:35,812 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:44:35,812 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:35,813 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:35,817 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:44:35,853 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:35,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:35,859 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:44:35,895 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:44:35,902 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff885e5670> has no local changes
2024-12-15 00:44:35,902 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:44:35,911 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:44:35,911 [ scc.git] DEBUG [detached HEAD 7429b3f] merge master -Dorg -Ssuccess-only
2024-12-15 00:44:35,911 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:44:36,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2024-12-15 00:44:36,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/15 HTTP/1.1" 200 None
2024-12-15 00:44:37,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/b5d953edc0b64a1bba13e9d5d90f3f9e68b7a332 HTTP/1.1" 200 None
2024-12-15 00:44:37,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/b5d953edc0b64a1bba13e9d5d90f3f9e68b7a332/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:38,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/b5d953edc0b64a1bba13e9d5d90f3f9e68b7a332/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:44:38,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/14 HTTP/1.1" 200 None
2024-12-15 00:44:39,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/fb7700b8eb4b753884260b7921e65b58b29f954e HTTP/1.1" 200 None
2024-12-15 00:44:39,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/fb7700b8eb4b753884260b7921e65b58b29f954e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:40,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/fb7700b8eb4b753884260b7921e65b58b29f954e HTTP/1.1" 200 None
2024-12-15 00:44:40,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/fb7700b8eb4b753884260b7921e65b58b29f954e?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:40,580 [ scc.repo] DEBUG - PR 14 jburel 'use conda-forge channel'
2024-12-15 00:44:40,580 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:44:40,580 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2024-12-15 00:44:40,581 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:40,581 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:40,587 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:44:40,592 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:44:40,592 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:44:40,597 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:44:40,602 [ scc.git] DEBUG Already up to date.
2024-12-15 00:44:40,602 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2024-12-15 00:44:40,904 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2024-12-15 00:44:40,904 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2024-12-15 00:44:40,908 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:44:40,909 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:40,909 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:40,915 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb7700b8eb4b753884260b7921e65b58b29f954e'
2024-12-15 00:44:40,921 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:40,926 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (use conda-forge channel) fb7700b8eb4b753884260b7921e65b58b29f954e'
2024-12-15 00:44:40,935 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:44:41,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:41,067 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:44:41,111 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:41,111 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:41,118 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:44:41,158 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:44:41,165 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff8865bf40> has no local changes
2024-12-15 00:44:41,165 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Excluded PRs:
- PR 15 jburel 'Build' (status: failure)
Already up to date.
Merged PRs:
- PR 14 jburel 'use conda-forge channel'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:44:41,173 [ scc.git] DEBUG [detached HEAD f36a9b9] merge master -Dorg -Ssuccess-only
2024-12-15 00:44:41,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:44:41,173 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:44:41,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2024-12-15 00:44:42,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/29 HTTP/1.1" 200 None
2024-12-15 00:44:42,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/92f4771ebb5da70c8bfef5cf9c24bcef7fe8db24 HTTP/1.1" 200 None
2024-12-15 00:44:43,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/92f4771ebb5da70c8bfef5cf9c24bcef7fe8db24/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:43,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/92f4771ebb5da70c8bfef5cf9c24bcef7fe8db24 HTTP/1.1" 200 None
2024-12-15 00:44:43,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/92f4771ebb5da70c8bfef5cf9c24bcef7fe8db24?per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:44,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/92f4771ebb5da70c8bfef5cf9c24bcef7fe8db24 HTTP/1.1" 200 None
2024-12-15 00:44:44,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/92f4771ebb5da70c8bfef5cf9c24bcef7fe8db24/status HTTP/1.1" 200 None
2024-12-15 00:44:44,926 [ scc.repo] DEBUG - PR 29 jburel 'Build'
2024-12-15 00:44:45,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/28 HTTP/1.1" 200 None
2024-12-15 00:44:45,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/6 HTTP/1.1" 200 None
2024-12-15 00:44:46,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/6/comments HTTP/1.1" 200 None
2024-12-15 00:44:46,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/20757563a49aa42b99a0c43176f6ef747e965b61 HTTP/1.1" 200 None
2024-12-15 00:44:47,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/20757563a49aa42b99a0c43176f6ef747e965b61/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:47,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/20757563a49aa42b99a0c43176f6ef747e965b61 HTTP/1.1" 200 None
2024-12-15 00:44:48,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/20757563a49aa42b99a0c43176f6ef747e965b61?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:48,064 [ scc.repo] DEBUG - PR 6 dominikl 'Add method to create masks grouped by label id'
2024-12-15 00:44:48,064 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:44:48,064 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2024-12-15 00:44:48,065 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:48,065 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:48,071 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:44:48,076 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:44:48,076 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:44:48,081 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:44:48,087 [ scc.git] DEBUG Already up to date.
2024-12-15 00:44:48,087 [ scc.git] DEBUG Calling 'git fetch origin pull/6/head'
2024-12-15 00:44:48,426 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2024-12-15 00:44:48,426 [ scc.git] DEBUG * branch refs/pull/6/head -> FETCH_HEAD
2024-12-15 00:44:48,431 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head'
2024-12-15 00:44:49,122 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2024-12-15 00:44:49,122 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD
2024-12-15 00:44:49,126 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:44:49,127 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:49,127 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:49,132 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...20757563a49aa42b99a0c43176f6ef747e965b61'
2024-12-15 00:44:49,138 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:49,143 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 6 (Add method to create masks grouped by label id) 20757563a49aa42b99a0c43176f6ef747e965b61'
2024-12-15 00:44:49,165 [ scc.git] DEBUG Auto-merging src/omero_rois/library.py
2024-12-15 00:44:49,165 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:44:49,168 [ scc.git] DEBUG src/omero_rois/library.py | 33 +++++++++++++++++++++++++++++++++
2024-12-15 00:44:49,168 [ scc.git] DEBUG 1 file changed, 33 insertions(+)
2024-12-15 00:44:49,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:49,298 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...92f4771ebb5da70c8bfef5cf9c24bcef7fe8db24'
2024-12-15 00:44:49,305 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:49,311 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Build) 92f4771ebb5da70c8bfef5cf9c24bcef7fe8db24'
2024-12-15 00:44:49,420 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:44:49,423 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 +-
2024-12-15 00:44:49,423 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 12 +++++++-----
2024-12-15 00:44:49,423 [ scc.git] DEBUG 2 files changed, 8 insertions(+), 6 deletions(-)
2024-12-15 00:44:49,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:49,686 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:44:49,727 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:49,727 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:49,732 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:44:49,771 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:44:49,778 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff8860e730> has no local changes
2024-12-15 00:44:49,778 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 28 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 6 dominikl 'Add method to create masks grouped by label id'
- PR 29 jburel 'Build'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:44:49,787 [ scc.git] DEBUG [detached HEAD 92dcefd] merge master -Dorg -Ssuccess-only
2024-12-15 00:44:49,788 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:44:49,788 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:44:50,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2024-12-15 00:44:50,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2024-12-15 00:44:51,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2024-12-15 00:44:51,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2024-12-15 00:44:52,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:52,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2024-12-15 00:44:52,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:44:52,901 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2024-12-15 00:44:52,901 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:44:52,901 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2024-12-15 00:44:52,901 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:52,902 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:52,908 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:44:52,913 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:44:52,914 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:44:52,924 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:44:52,934 [ scc.git] DEBUG Updating c8610db..be76813
2024-12-15 00:44:53,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls/21 HTTP/1.1" 200 None
2024-12-15 00:44:53,540 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2024-12-15 00:44:53,917 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2024-12-15 00:44:53,917 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2024-12-15 00:44:53,923 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:44:53,923 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:53,923 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:53,929 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2024-12-15 00:44:53,935 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:53,940 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2024-12-15 00:44:53,985 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2024-12-15 00:44:53,985 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2024-12-15 00:44:53,985 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2024-12-15 00:44:53,985 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2024-12-15 00:44:53,985 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2024-12-15 00:44:53,985 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2024-12-15 00:44:53,985 [ scc.git] DEBUG Auto-merging setup.py
2024-12-15 00:44:53,985 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2024-12-15 00:44:53,985 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:44:53,986 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:44:53,992 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2024-12-15 00:44:53,999 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2024-12-15 00:44:54,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:44:54,133 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2024-12-15 00:44:54,140 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2024-12-15 00:44:54,146 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/signup_settings.py
- setup.py
- omero_signup/views.py
--conflicts
2024-12-15 00:44:54,152 [ scc.config] DEBUG Found github.token
2024-12-15 00:44:54,153 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2024-12-15 00:44:54,153 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:44:54,193 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:44:54,193 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:44:54,199 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:44:54,238 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:44:54,244 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff8860e610> has no local changes
2024-12-15 00:44:54,244 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Updating c8610db..be76813
Previously merged:
- PR 21 jburel 'Build'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:44:54,252 [ scc.git] DEBUG [detached HEAD 5e390a6] merge master -Dorg -Ssuccess-only
2024-12-15 00:44:54,252 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:44:54,252 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:44:54,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2024-12-15 00:44:55,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2024-12-15 00:44:55,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2024-12-15 00:44:56,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2024-12-15 00:44:56,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:44:57,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:44:57,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2024-12-15 00:44:58,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2024-12-15 00:44:58,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2024-12-15 00:44:59,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2024-12-15 00:44:59,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2024-12-15 00:45:00,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:45:00,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2024-12-15 00:45:00,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:45:00,971 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2024-12-15 00:45:00,971 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:45:00,971 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2024-12-15 00:45:00,971 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:00,971 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:00,978 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:45:00,984 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:45:00,984 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:45:00,990 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:45:00,996 [ scc.git] DEBUG Already up to date.
2024-12-15 00:45:00,996 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2024-12-15 00:45:01,366 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2024-12-15 00:45:01,366 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2024-12-15 00:45:01,371 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:45:01,371 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:01,371 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:01,377 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2024-12-15 00:45:01,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:01,388 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2024-12-15 00:45:01,408 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:45:01,411 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2024-12-15 00:45:01,411 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2024-12-15 00:45:01,411 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2024-12-15 00:45:01,411 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2024-12-15 00:45:01,411 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2024-12-15 00:45:01,411 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2024-12-15 00:45:01,411 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2024-12-15 00:45:01,411 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2024-12-15 00:45:01,411 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2024-12-15 00:45:01,413 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2024-12-15 00:45:01,414 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2024-12-15 00:45:01,414 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2024-12-15 00:45:01,414 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2024-12-15 00:45:01,414 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2024-12-15 00:45:01,414 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2024-12-15 00:45:01,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:01,556 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:45:01,598 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:01,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:01,604 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:45:01,644 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:45:01,651 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff8860dd60> has no local changes
2024-12-15 00:45:01,652 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:45:01,661 [ scc.git] DEBUG [detached HEAD 5e81b8f] merge master -Dorg -Ssuccess-only
2024-12-15 00:45:01,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:01,662 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:45:02,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2024-12-15 00:45:02,011 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:45:02,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2024-12-15 00:45:02,011 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:02,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:02,017 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:45:02,022 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:45:02,022 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:45:02,027 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:45:02,033 [ scc.git] DEBUG Already up to date.
2024-12-15 00:45:02,033 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:45:02,034 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:02,034 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:02,038 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:45:02,079 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:02,079 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:02,085 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:45:02,125 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:45:02,132 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff88659bb0> has no local changes
2024-12-15 00:45:02,132 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:45:02,141 [ scc.git] DEBUG [detached HEAD 5ce16b5] merge master -Dorg -Ssuccess-only
2024-12-15 00:45:02,142 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:02,142 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:45:02,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2024-12-15 00:45:02,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/20 HTTP/1.1" 200 None
2024-12-15 00:45:03,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/20/comments HTTP/1.1" 200 None
2024-12-15 00:45:03,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/14c890a5b62ef9937c751230251154351debb9ea HTTP/1.1" 200 None
2024-12-15 00:45:04,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/14c890a5b62ef9937c751230251154351debb9ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:45:04,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/14c890a5b62ef9937c751230251154351debb9ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:45:05,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/14c890a5b62ef9937c751230251154351debb9ea HTTP/1.1" 200 None
2024-12-15 00:45:05,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/14c890a5b62ef9937c751230251154351debb9ea?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:45:05,752 [ scc.repo] DEBUG - PR 20 jburel 'Build'
2024-12-15 00:45:05,752 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:45:05,752 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2024-12-15 00:45:05,752 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:05,752 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:05,758 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:45:05,764 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:45:05,764 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:45:05,770 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:45:05,776 [ scc.git] DEBUG Already up to date.
2024-12-15 00:45:05,776 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2024-12-15 00:45:06,329 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2024-12-15 00:45:06,329 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2024-12-15 00:45:06,334 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:45:06,334 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:06,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:06,340 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14c890a5b62ef9937c751230251154351debb9ea'
2024-12-15 00:45:06,346 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:06,351 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Build) 14c890a5b62ef9937c751230251154351debb9ea'
2024-12-15 00:45:06,412 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:45:06,415 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 +-
2024-12-15 00:45:06,415 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 12 +++++++-----
2024-12-15 00:45:06,415 [ scc.git] DEBUG .omeroci/app-build | 19 +++++++++++++++++++
2024-12-15 00:45:06,415 [ scc.git] DEBUG 3 files changed, 27 insertions(+), 6 deletions(-)
2024-12-15 00:45:06,415 [ scc.git] DEBUG create mode 100755 .omeroci/app-build
2024-12-15 00:45:06,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:06,555 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:45:06,595 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:06,595 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:06,602 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:45:06,643 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:45:06,650 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff88601f70> has no local changes
2024-12-15 00:45:06,650 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Already up to date.
Merged PRs:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:45:06,659 [ scc.git] DEBUG [detached HEAD f21ce14] merge master -Dorg -Ssuccess-only
2024-12-15 00:45:06,660 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:06,660 [ scc.git] INFO Overriding base-branch from master to main
2024-12-15 00:45:06,660 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:45:07,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2024-12-15 00:45:07,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2024-12-15 00:45:07,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2024-12-15 00:45:08,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2024-12-15 00:45:08,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:45:09,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:45:09,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/17 HTTP/1.1" 200 None
2024-12-15 00:45:10,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/17/comments HTTP/1.1" 200 None
2024-12-15 00:45:10,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/95ff08b2a68cca22dc7cb6eb56b8b2faa53012bc HTTP/1.1" 200 None
2024-12-15 00:45:11,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/95ff08b2a68cca22dc7cb6eb56b8b2faa53012bc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:45:11,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/95ff08b2a68cca22dc7cb6eb56b8b2faa53012bc/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:45:12,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/95ff08b2a68cca22dc7cb6eb56b8b2faa53012bc HTTP/1.1" 200 None
2024-12-15 00:45:12,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/95ff08b2a68cca22dc7cb6eb56b8b2faa53012bc?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:45:12,696 [ scc.repo] DEBUG - PR 17 jburel 'Build'
2024-12-15 00:45:13,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2024-12-15 00:45:13,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2024-12-15 00:45:14,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2024-12-15 00:45:14,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2024-12-15 00:45:15,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:45:15,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2024-12-15 00:45:15,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:45:15,869 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2024-12-15 00:45:15,869 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:45:15,869 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2024-12-15 00:45:15,869 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:15,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:15,876 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2024-12-15 00:45:15,880 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:45:15,881 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2024-12-15 00:45:15,886 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2024-12-15 00:45:15,891 [ scc.git] DEBUG Already up to date.
2024-12-15 00:45:15,891 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2024-12-15 00:45:16,332 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2024-12-15 00:45:16,333 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2024-12-15 00:45:16,337 [ scc.git] DEBUG Calling 'git fetch origin pull/17/head'
2024-12-15 00:45:16,759 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2024-12-15 00:45:16,759 [ scc.git] DEBUG * branch refs/pull/17/head -> FETCH_HEAD
2024-12-15 00:45:16,761 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:45:16,762 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:16,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:16,767 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2024-12-15 00:45:16,773 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:16,777 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2024-12-15 00:45:16,801 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2024-12-15 00:45:16,801 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2024-12-15 00:45:16,801 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:45:16,802 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:45:16,808 [ scc.git] DEBUG Calling 'git reset --hard 67bb245b8b08709e04a8bf52b02de2298a029a94'
2024-12-15 00:45:16,815 [ scc.git] DEBUG HEAD is now at 67bb245 Bump version: 0.1.1 → 0.1.2.dev0
2024-12-15 00:45:16,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:16,952 [ scc.git] DEBUG Calling 'git merge-base 67bb245b8b08709e04a8bf52b02de2298a029a94 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2024-12-15 00:45:16,958 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..67bb245b8b08709e04a8bf52b02de2298a029a94'
2024-12-15 00:45:16,963 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2024-12-15 00:45:16,968 [ scc.config] DEBUG Found github.token
2024-12-15 00:45:16,969 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2024-12-15 00:45:16,969 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...95ff08b2a68cca22dc7cb6eb56b8b2faa53012bc'
2024-12-15 00:45:16,974 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:16,979 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 17 (Build) 95ff08b2a68cca22dc7cb6eb56b8b2faa53012bc'
2024-12-15 00:45:16,989 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:45:16,992 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 +-
2024-12-15 00:45:16,992 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 12 +++++++-----
2024-12-15 00:45:16,992 [ scc.git] DEBUG .omeroci/app-deps | 12 ++++++++++++
2024-12-15 00:45:16,992 [ scc.git] DEBUG omero_web_zarr/utils.py | 18 +++++++++---------
2024-12-15 00:45:16,992 [ scc.git] DEBUG setup.py | 38 +++++++++++++++++++-------------------
2024-12-15 00:45:16,992 [ scc.git] DEBUG test/integration/test_ngff.py | 2 +-
2024-12-15 00:45:16,992 [ scc.git] DEBUG 6 files changed, 49 insertions(+), 35 deletions(-)
2024-12-15 00:45:16,992 [ scc.git] DEBUG create mode 100755 .omeroci/app-deps
2024-12-15 00:45:17,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:17,343 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:45:17,383 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:17,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:17,389 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:45:17,428 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:45:17,435 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff88583af0> has no local changes
2024-12-15 00:45:17,435 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 17 jburel 'Build'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:45:17,443 [ scc.git] DEBUG [detached HEAD b1bbc83] merge master -Dorg -Ssuccess-only
2024-12-15 00:45:17,443 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:17,443 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:45:17,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2024-12-15 00:45:17,754 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:45:17,754 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2024-12-15 00:45:17,754 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:17,754 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:17,759 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:45:17,764 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:45:17,764 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:45:17,769 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:45:17,774 [ scc.git] DEBUG Already up to date.
2024-12-15 00:45:17,775 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:45:17,775 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:17,775 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:17,780 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:45:17,819 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:17,819 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:17,826 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:45:17,864 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:45:17,870 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff88583a30> has no local changes
2024-12-15 00:45:17,871 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:45:17,878 [ scc.git] DEBUG [detached HEAD 8c64207] merge master -Dorg -Ssuccess-only
2024-12-15 00:45:17,879 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:17,879 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:45:18,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2024-12-15 00:45:18,175 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:45:18,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2024-12-15 00:45:18,175 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:18,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:18,181 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:45:18,186 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:45:18,186 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:45:18,192 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:45:18,198 [ scc.git] DEBUG Already up to date.
2024-12-15 00:45:18,198 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:45:18,198 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:18,198 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:18,203 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:45:18,242 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:18,242 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:18,247 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:45:18,285 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:45:18,292 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff885298b0> has no local changes
2024-12-15 00:45:18,292 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:45:18,301 [ scc.git] DEBUG [detached HEAD c08ba5b] merge master -Dorg -Ssuccess-only
2024-12-15 00:45:18,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:18,301 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:45:18,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2024-12-15 00:45:19,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2024-12-15 00:45:19,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2024-12-15 00:45:20,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2024-12-15 00:45:20,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:45:21,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2024-12-15 00:45:21,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:45:21,500 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2024-12-15 00:45:21,500 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:45:21,500 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2024-12-15 00:45:21,500 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:21,500 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:21,506 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-12-15 00:45:21,511 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:45:21,512 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-12-15 00:45:21,518 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-12-15 00:45:21,524 [ scc.git] DEBUG Already up to date.
2024-12-15 00:45:21,524 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2024-12-15 00:45:21,857 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2024-12-15 00:45:21,858 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2024-12-15 00:45:21,862 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:45:21,863 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:21,863 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:21,869 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2024-12-15 00:45:21,874 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:21,879 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2024-12-15 00:45:21,979 [ scc.git] DEBUG Auto-merging Dockerfile
2024-12-15 00:45:21,979 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2024-12-15 00:45:21,979 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:45:21,980 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:45:21,987 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2024-12-15 00:45:21,995 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2024-12-15 00:45:22,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:22,132 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2024-12-15 00:45:22,139 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2024-12-15 00:45:22,145 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2024-12-15 00:45:22,150 [ scc.config] DEBUG Found github.token
2024-12-15 00:45:22,151 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2024-12-15 00:45:22,151 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:45:22,191 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:22,191 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:22,197 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:45:22,236 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:45:22,244 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff885295b0> has no local changes
2024-12-15 00:45:22,244 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:45:22,253 [ scc.git] DEBUG [detached HEAD ea195ae] merge master -Dorg -Ssuccess-only
2024-12-15 00:45:22,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:22,253 [ scc.git] INFO Overriding base-branch from master to develop
2024-12-15 00:45:22,253 [ scc.repo] DEBUG ## PRs found:
2024-12-15 00:45:22,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2024-12-15 00:45:23,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2024-12-15 00:45:23,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2024-12-15 00:45:24,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2024-12-15 00:45:24,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:45:25,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-12-15 00:45:25,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2024-12-15 00:45:25,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:45:25,862 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2024-12-15 00:45:26,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216 HTTP/1.1" 200 None
2024-12-15 00:45:26,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216/comments HTTP/1.1" 200 None
2024-12-15 00:45:27,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545/issues/216/comments?page=2 HTTP/1.1" 200 None
2024-12-15 00:45:27,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2024-12-15 00:45:28,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2024-12-15 00:45:28,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-12-15 00:45:29,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-12-15 00:45:29,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-12-15 00:45:30,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2024-12-15 00:45:30,024 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-12-15 00:45:30,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2024-12-15 00:45:31,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2024-12-15 00:45:31,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2024-12-15 00:45:31,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2024-12-15 00:45:31,978 [ scc.repo] DEBUG ## Branches found:
2024-12-15 00:45:31,978 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2024-12-15 00:45:31,979 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:31,979 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:31,985 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2024-12-15 00:45:31,990 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-12-15 00:45:31,990 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2024-12-15 00:45:31,996 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2024-12-15 00:45:32,001 [ scc.git] DEBUG Already up to date.
2024-12-15 00:45:32,002 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2024-12-15 00:45:32,456 [ scc.git] DEBUG From https://github.com/ome/scripts
2024-12-15 00:45:32,456 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2024-12-15 00:45:32,461 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2024-12-15 00:45:32,761 [ scc.git] DEBUG From https://github.com/ome/scripts
2024-12-15 00:45:32,762 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2024-12-15 00:45:32,766 [ scc.git] DEBUG ## Unique users: []
2024-12-15 00:45:32,766 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:32,766 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:32,772 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-12-15 00:45:32,780 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:32,785 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-12-15 00:45:32,886 [ scc.git] DEBUG Auto-merging omero/annotation_scripts/KeyVal_to_csv.py
2024-12-15 00:45:32,886 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero/annotation_scripts/KeyVal_to_csv.py
2024-12-15 00:45:32,886 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-12-15 00:45:32,886 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-12-15 00:45:32,893 [ scc.git] DEBUG Calling 'git reset --hard 312afbed633613e1f728a1fe9eaac096e54318e0'
2024-12-15 00:45:32,900 [ scc.git] DEBUG HEAD is now at 312afbe Bump version: 5.8.3 → 5.8.4.dev0
2024-12-15 00:45:33,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:33,043 [ scc.git] DEBUG Calling 'git merge-base 312afbed633613e1f728a1fe9eaac096e54318e0 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-12-15 00:45:33,052 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..312afbed633613e1f728a1fe9eaac096e54318e0'
2024-12-15 00:45:33,057 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#279](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2024-12-15 00:45:33,062 [ scc.config] DEBUG Found github.token
2024-12-15 00:45:33,062 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2024-12-15 00:45:33,062 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2024-12-15 00:45:33,067 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:33,072 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2024-12-15 00:45:33,082 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-12-15 00:45:33,084 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2024-12-15 00:45:33,084 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2024-12-15 00:45:33,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:33,446 [ scc.git] DEBUG Calling 'git submodule update'
2024-12-15 00:45:33,486 [ scc.git] DEBUG Get sha1 of %s
2024-12-15 00:45:33,487 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-12-15 00:45:33,492 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:45:33,530 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:45:33,537 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff885bcf10> has no local changes
2024-12-15 00:45:33,537 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:45:33,545 [ scc.git] DEBUG [detached HEAD ef09915] merge master -Dorg -Ssuccess-only
2024-12-15 00:45:33,546 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:33,546 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-12-15 00:45:33,622 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2024-12-15 00:45:33,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:33,846 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2024-12-15 00:45:33,851 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2024-12-15 00:45:34,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:34,237 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2024-12-15 00:45:34,242 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2024-12-15 00:45:34,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:34,628 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2024-12-15 00:45:34,632 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2024-12-15 00:45:35,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:35,018 [ scc.config] DEBUG Found submodule.omero-figure.url
2024-12-15 00:45:35,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:35,398 [ scc.config] DEBUG Found submodule.omero-figure.branch
2024-12-15 00:45:35,403 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2024-12-15 00:45:35,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:35,795 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2024-12-15 00:45:35,801 [ scc.config] DEBUG Found submodule.omero-gallery.url
2024-12-15 00:45:36,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:36,215 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2024-12-15 00:45:36,220 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2024-12-15 00:45:36,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:36,604 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2024-12-15 00:45:36,609 [ scc.config] DEBUG Found submodule.omero-mapr.url
2024-12-15 00:45:36,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:37,004 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2024-12-15 00:45:37,010 [ scc.config] DEBUG Found submodule.omero-metadata.url
2024-12-15 00:45:37,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:37,386 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2024-12-15 00:45:37,390 [ scc.config] DEBUG Found submodule.omero-parade.url
2024-12-15 00:45:37,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:37,774 [ scc.config] DEBUG Found submodule.omero-parade.branch
2024-12-15 00:45:37,779 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2024-12-15 00:45:38,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:38,166 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2024-12-15 00:45:38,170 [ scc.config] DEBUG Found submodule.omero-rois.url
2024-12-15 00:45:38,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:38,568 [ scc.config] DEBUG Found submodule.omero-signup.url
2024-12-15 00:45:38,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:38,975 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2024-12-15 00:45:39,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:39,363 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2024-12-15 00:45:39,369 [ scc.config] DEBUG Found submodule.omero-upload.url
2024-12-15 00:45:39,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:39,784 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2024-12-15 00:45:40,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:40,165 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2024-12-15 00:45:40,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:40,564 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2024-12-15 00:45:40,569 [ scc.config] DEBUG Found submodule.omero-weberror.url
2024-12-15 00:45:40,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:40,960 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2024-12-15 00:45:40,965 [ scc.config] DEBUG Found submodule.omero-webtest.url
2024-12-15 00:45:41,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:41,351 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2024-12-15 00:45:41,356 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2024-12-15 00:45:41,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:41,736 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2024-12-15 00:45:41,740 [ scc.config] DEBUG Found submodule.scripts.url
2024-12-15 00:45:42,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-12-15 00:45:42,123 [ scc.config] DEBUG Found submodule.scripts.branch
2024-12-15 00:45:42,124 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-12-15 00:45:42,202 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff8b2e5e20> has local changes
2024-12-15 00:45:42,202 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 422 dependabot[bot] 'Bump omero-figure from `1dfb138` to `d5050d8`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 147 will-moore 'Name option'
Conflicting PRs (not included):
- PR 102 will-moore 'Zarr export tests'
- PR 123 will-moore 'Support export of Fileset:ID'
Repository: ome/omero-figure
Excluded PRs:
- PR 605 Tom-TBT 'Colorbar feature' (user: Tom-TBT)
- PR 600 Rdornier 'Label on rois' (user: Rdornier)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating d5050d8c..fb316a7e
Previously merged:
- PR 602 will-moore 'Changelog 7.2.0'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Already up to date.
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
Repository: ome/omero-metadata
Already up to date.
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Repository: ome/omero-prometheus-tools
Excluded PRs:
- PR 15 jburel 'Build' (status: failure)
Already up to date.
Merged PRs:
- PR 14 jburel 'use conda-forge channel'
Repository: ome/omero-rois
Excluded PRs:
- PR 28 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 6 dominikl 'Add method to create masks grouped by label id'
- PR 29 jburel 'Build'
Repository: ome/omero-signup
Updating c8610db..be76813
Previously merged:
- PR 21 jburel 'Build'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Already up to date.
Merged PRs:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 17 jburel 'Build'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#279 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/279/)'
2024-12-15 00:45:42,216 [ scc.git] DEBUG [detached HEAD 0ecf34d] merge master -Dorg -Ssuccess-only
2024-12-15 00:45:42,216 [ scc.merge] INFO Repository: ome/omero-plugins
2024-12-15 00:45:42,216 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2024-12-15 00:45:42,216 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,216 [ scc.merge] INFO
2024-12-15 00:45:42,216 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,216 [ scc.merge] INFO - PR 422 dependabot[bot] 'Bump omero-figure from `1dfb138` to `d5050d8`'
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO Repository: ome/minimal-omero-client
2024-12-15 00:45:42,217 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2024-12-15 00:45:42,217 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2024-12-15 00:45:42,217 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO Repository: ome/omero-cli-render
2024-12-15 00:45:42,217 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2024-12-15 00:45:42,217 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2024-12-15 00:45:42,217 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2024-12-15 00:45:42,217 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO Conflicting PRs (not included):
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 102 will-moore 'Zarr export tests'
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID'
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,217 [ scc.merge] INFO Repository: ome/omero-figure
2024-12-15 00:45:42,217 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' (user: Tom-TBT)
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' (user: Rdornier)
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2024-12-15 00:45:42,217 [ scc.merge] INFO Updating d5050d8c..fb316a7e
2024-12-15 00:45:42,217 [ scc.merge] INFO Previously merged:
2024-12-15 00:45:42,217 [ scc.merge] INFO - PR 602 will-moore 'Changelog 7.2.0'
2024-12-15 00:45:42,217 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2024-12-15 00:45:42,218 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,218 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2024-12-15 00:45:42,218 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO Repository: ome/omero-gallery
2024-12-15 00:45:42,218 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,218 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2024-12-15 00:45:42,218 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO Conflicting PRs (not included):
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2024-12-15 00:45:42,218 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO Repository: ome/omero-iviewer
2024-12-15 00:45:42,218 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2024-12-15 00:45:42,218 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,218 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2024-12-15 00:45:42,218 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO Repository: ome/omero-mapr
2024-12-15 00:45:42,218 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2024-12-15 00:45:42,218 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,218 [ scc.merge] INFO
2024-12-15 00:45:42,218 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,218 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,219 [ scc.merge] INFO Repository: ome/omero-metadata
2024-12-15 00:45:42,219 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,219 [ scc.merge] INFO Conflicting PRs (not included):
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,219 [ scc.merge] INFO Repository: ome/omero-parade
2024-12-15 00:45:42,219 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2024-12-15 00:45:42,219 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,219 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2024-12-15 00:45:42,219 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 15 jburel 'Build' (status: failure)
2024-12-15 00:45:42,219 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,219 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 14 jburel 'use conda-forge channel'
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,219 [ scc.merge] INFO Repository: ome/omero-rois
2024-12-15 00:45:42,219 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 28 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2024-12-15 00:45:42,219 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,219 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 6 dominikl 'Add method to create masks grouped by label id'
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 29 jburel 'Build'
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,219 [ scc.merge] INFO Repository: ome/omero-signup
2024-12-15 00:45:42,219 [ scc.merge] INFO Updating c8610db..be76813
2024-12-15 00:45:42,219 [ scc.merge] INFO Previously merged:
2024-12-15 00:45:42,219 [ scc.merge] INFO - PR 21 jburel 'Build'
2024-12-15 00:45:42,219 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Conflicting PRs (not included):
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2024-12-15 00:45:42,220 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2024-12-15 00:45:42,220 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Repository: ome/omero-upload
2024-12-15 00:45:42,220 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2024-12-15 00:45:42,220 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 20 jburel 'Build'
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Repository: ome/omero-web-zarr
2024-12-15 00:45:42,220 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2024-12-15 00:45:42,220 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 17 jburel 'Build'
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Conflicting PRs (not included):
2024-12-15 00:45:42,220 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2024-12-15 00:45:42,220 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO
2024-12-15 00:45:42,220 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2024-12-15 00:45:42,220 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,221 [ scc.merge] INFO
2024-12-15 00:45:42,221 [ scc.merge] INFO
2024-12-15 00:45:42,221 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2024-12-15 00:45:42,221 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,221 [ scc.merge] INFO
2024-12-15 00:45:42,221 [ scc.merge] INFO Conflicting PRs (not included):
2024-12-15 00:45:42,221 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2024-12-15 00:45:42,221 [ scc.merge] INFO
2024-12-15 00:45:42,221 [ scc.merge] INFO Repository: ome/scripts
2024-12-15 00:45:42,221 [ scc.merge] INFO Excluded PRs:
2024-12-15 00:45:42,221 [ scc.merge] INFO - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
2024-12-15 00:45:42,221 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2024-12-15 00:45:42,221 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2024-12-15 00:45:42,221 [ scc.merge] INFO Already up to date.
2024-12-15 00:45:42,221 [ scc.merge] INFO
2024-12-15 00:45:42,221 [ scc.merge] INFO Merged PRs:
2024-12-15 00:45:42,221 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2024-12-15 00:45:42,221 [ scc.merge] INFO
2024-12-15 00:45:42,221 [ scc.merge] INFO Conflicting PRs (not included):
2024-12-15 00:45:42,221 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-12-15 00:45:42,221 [ scc.merge] INFO
2024-12-15 00:45:42,221 [ scc.merge] DEBUG Cleaning remote branches created for merging
2024-12-15 00:45:42,221 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,226 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2024-12-15 00:45:42,226 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,231 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,231 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2024-12-15 00:45:42,231 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2024-12-15 00:45:42,236 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,240 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2024-12-15 00:45:42,241 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2024-12-15 00:45:42,245 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2024-12-15 00:45:42,250 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2024-12-15 00:45:42,255 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2024-12-15 00:45:42,259 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,265 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,265 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2024-12-15 00:45:42,265 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,270 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,270 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2024-12-15 00:45:42,270 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2024-12-15 00:45:42,275 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,280 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,280 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2024-12-15 00:45:42,280 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,286 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2024-12-15 00:45:42,286 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,291 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,291 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2024-12-15 00:45:42,291 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2024-12-15 00:45:42,296 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2024-12-15 00:45:42,301 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2024-12-15 00:45:42,306 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2024-12-15 00:45:42,311 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,316 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,316 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2024-12-15 00:45:42,316 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,320 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2024-12-15 00:45:42,321 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2024-12-15 00:45:42,326 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2024-12-15 00:45:42,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2024-12-15 00:45:42,330 [ scc.git] DEBUG Calling 'git remote'
2024-12-15 00:45:42,336 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.9/site-packages/setuptools/dist.py:466: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.9/site-packages/setuptools/dist.py:466: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
python3: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.1-SNAPSHOT
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 5eb9e06] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from d5050d8c
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from b4102d4
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from 18bccb6
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from 5c752d5
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from c8610db
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 67bb245
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 312afbe
nothing to commit, working tree clean
[detached HEAD a12c176] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2024-12-15 00:46:28,478 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2024-12-15 00:46:37,280 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2024-12-15 00:46:39,581 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2024-12-15 00:46:44,031 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2024-12-15 00:47:23,647 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS