07:39:47 Started by user devspace 07:39:47 Running as SYSTEM 07:39:47 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 07:39:47 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4019724234591258359.sh 07:39:47 + source /home/settings.env 07:39:47 ++ OMERO_DB_HOST=pg 07:39:47 ++ OMERO_DB_USER=postgres 07:39:47 ++ OMERO_DB_PASS= 07:39:47 ++ OMERO_ROOT_PASS=omero 07:39:47 ++ OMERO_DATA_DIR=/OMERO 07:39:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 07:39:47 + OMERO_DB_NAME=OMERO-server 07:39:47 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 07:39:47 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 07:39:47 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 07:39:47 + OMERO_DATA_DIR=/home/omero/omero-server-data 07:39:47 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 07:39:47 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 07:39:47 ++ deactivate nondestructive 07:39:47 ++ '[' -n '' ']' 07:39:47 ++ '[' -n '' ']' 07:39:47 ++ '[' -n /bin/bash -o -n '' ']' 07:39:47 ++ hash -r 07:39:47 ++ '[' -n '' ']' 07:39:47 ++ unset VIRTUAL_ENV 07:39:47 ++ '[' '!' nondestructive = nondestructive ']' 07:39:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 07:39:47 ++ export VIRTUAL_ENV 07:39:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:39:47 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:39:47 ++ export PATH 07:39:47 ++ '[' -n '' ']' 07:39:47 ++ '[' -z '' ']' 07:39:47 ++ _OLD_VIRTUAL_PS1= 07:39:47 ++ PS1='(.venv3) ' 07:39:47 ++ export PS1 07:39:47 ++ '[' -n /bin/bash -o -n '' ']' 07:39:47 ++ hash -r 07:39:47 + omero admin stop 07:39:48 Missing internal configuration. Pass --force-rewrite to the command. 07:39:48 + echo not running 07:39:48 not running 07:39:48 + sleep 5 07:39:53 + deactivate 07:39:53 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 07:39:53 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:39:53 + export PATH 07:39:53 + unset _OLD_VIRTUAL_PATH 07:39:53 + '[' -n '' ']' 07:39:53 + '[' -n /bin/bash -o -n '' ']' 07:39:53 + hash -r 07:39:53 + '[' -n '' ']' 07:39:53 + unset VIRTUAL_ENV 07:39:53 + '[' '!' '' = nondestructive ']' 07:39:53 + unset -f deactivate 07:39:53 + rm -rf /home/omero/workspace/OMERO-server/.venv3 07:39:54 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 07:39:57 + '[' true = true ']' 07:39:57 + dropdb -h pg -U postgres OMERO-server 07:39:57 dropdb: error: database removal failed: ERROR: database "OMERO-server" does not exist 07:39:57 + echo 'First run or already exists' 07:39:57 First run or already exists 07:39:57 + rm -rf /home/omero/omero-server-data 07:39:57 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-py-5.19.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 07:39:59 Copied 1 artifact from "OMERO-build" build number 2 07:39:59 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 2 07:39:59 Copied 2 artifacts from "OMERO-build-build" build number 2 07:39:59 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16631752015202993374.sh 07:39:59 + source /home/settings.env 07:39:59 ++ OMERO_DB_HOST=pg 07:39:59 ++ OMERO_DB_USER=postgres 07:39:59 ++ OMERO_DB_PASS= 07:39:59 ++ OMERO_ROOT_PASS=omero 07:39:59 ++ OMERO_DATA_DIR=/OMERO 07:39:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 07:39:59 + OMERO_DB_NAME=OMERO-server 07:39:59 + OMERO_DATA_DIR=/home/omero/omero-server-data 07:39:59 + mkdir -p /home/omero/omero-server-data 07:39:59 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 07:39:59 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 07:39:59 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 07:39:59 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 07:39:59 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 07:39:59 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 07:39:59 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 07:39:59 ++ ls OMERO.server-5.6.3-435-12cd9157e9-ice36.zip 07:39:59 + ZIP=OMERO.server-5.6.3-435-12cd9157e9-ice36.zip 07:39:59 + '[' '!' -z '' ']' 07:39:59 + DIST=OMERO.server-5.6.3-435-12cd9157e9-ice36 07:39:59 + unzip OMERO.server-5.6.3-435-12cd9157e9-ice36.zip 07:39:59 Archive: OMERO.server-5.6.3-435-12cd9157e9-ice36.zip 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/blitz/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/grid/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/profiles/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/error/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/janelia/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/ncsa_paledit/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/wcif/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/analysis_scripts/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/annotation_scripts/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/export_scripts/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/figure_scripts/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/import_scripts/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/util_scripts/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/misc/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__1/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__10/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__11/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__2/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__3/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__4/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__5/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__6/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__7/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__8/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__9/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__4/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__5/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__6/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__7/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.1__0/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.2__0/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.2__0/t/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.3__0/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.4__0/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4__0/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.0__0/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.1__1/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.2__0/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__1/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__2/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__3/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/ 07:39:59 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/var/ 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/LICENSE.txt 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/backup.cfg 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/blitz/mail-senders.example 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/blitz/mail-server.example 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/build.properties 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/env.bat 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/env.sh 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/hibernate.properties 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/ice.config 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback-cli.xml 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback-indexing-cli.xml 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback-indexing.xml 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback.xml 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/mime.types 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/node1.cfg 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/node2.cfg 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/omero.properties 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/profiles/psql 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/rollover.cfg 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/Windows.cfg 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/error/maintainance.html 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/README 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/default.xml 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/templates.xml 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/windefault.xml 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/ice.config 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/internal.cfg 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/master.cfg 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/robot.template 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/testdropbox.config 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/history.rst 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/OMEZarrReader.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/activation.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/aggdesigner-algorithm.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/aircompressor.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/annotations.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/antlr.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/aopalliance.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/avatica-core.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/avatica-metrics.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/base.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-all.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-anim.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-awt-util.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-bridge.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-codec.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-constants.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-css.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-dom.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-ext.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-extension.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-gui-util.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-gvt.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-i18n.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-parser.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-rasterizer-ext.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-rasterizer.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-script.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-slideshow.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-squiggle-ext.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-squiggle.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svg-dom.jar 07:39:59 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svgbrowser.jar 07:39:59 inflating: 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OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/psql-header.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/schema.sql 07:40:02 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/views.sql 07:40:02 + rm -f OMERO.server-5.6.3-435-12cd9157e9-ice36.zip 07:40:02 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-435-12cd9157e9-ice36 /home/omero/workspace/OMERO-server/OMERO.server 07:40:02 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 07:40:02 ++ deactivate nondestructive 07:40:02 ++ '[' -n '' ']' 07:40:02 ++ '[' -n '' ']' 07:40:02 ++ '[' -n /bin/bash -o -n '' ']' 07:40:02 ++ hash -r 07:40:02 ++ '[' -n '' ']' 07:40:02 ++ unset VIRTUAL_ENV 07:40:02 ++ '[' '!' nondestructive = nondestructive ']' 07:40:02 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 07:40:02 ++ export VIRTUAL_ENV 07:40:02 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:40:02 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:40:02 ++ export PATH 07:40:02 ++ '[' -n '' ']' 07:40:02 ++ '[' -z '' ']' 07:40:02 ++ _OLD_VIRTUAL_PS1= 07:40:02 ++ PS1='(.venv3) ' 07:40:02 ++ export PS1 07:40:02 ++ '[' -n /bin/bash -o -n '' ']' 07:40:02 ++ hash -r 07:40:02 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 07:40:02 Collecting zeroc-ice==3.6.5 07:40:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 07:40:04 Installing collected packages: zeroc-ice 07:40:05 Successfully installed zeroc-ice-3.6.5 07:40:05 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 07:40:05 You should consider upgrading via the '/home/omero/workspace/OMERO-server/.venv3/bin/python3 -m pip install --upgrade pip' command. 07:40:05 + pip install -U pip future 07:40:05 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 07:40:05 Collecting pip 07:40:05 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 07:40:05 Collecting future 07:40:05 Using cached future-1.0.0-py3-none-any.whl (491 kB) 07:40:06 Installing collected packages: pip, future 07:40:06 Attempting uninstall: pip 07:40:06 Found existing installation: pip 21.2.3 07:40:06 Uninstalling pip-21.2.3: 07:40:06 Successfully uninstalled pip-21.2.3 07:40:07 Successfully installed future-1.0.0 pip-24.0 07:40:07 + pip install markdown 07:40:08 Collecting markdown 07:40:08 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 07:40:08 Collecting importlib-metadata>=4.4 (from markdown) 07:40:08 Using cached importlib_metadata-7.0.2-py3-none-any.whl.metadata (4.6 kB) 07:40:08 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 07:40:08 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) 07:40:08 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 07:40:08 Using cached importlib_metadata-7.0.2-py3-none-any.whl (24 kB) 07:40:08 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) 07:40:08 Installing collected packages: zipp, importlib-metadata, markdown 07:40:08 Successfully installed importlib-metadata-7.0.2 markdown-3.6 zipp-3.18.1 07:40:08 + pip install reportlab 07:40:09 Collecting reportlab 07:40:09 Using cached reportlab-4.1.0-py3-none-any.whl.metadata (1.4 kB) 07:40:09 Collecting pillow>=9.0.0 (from reportlab) 07:40:09 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB) 07:40:09 Collecting chardet (from reportlab) 07:40:09 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 07:40:09 Using cached reportlab-4.1.0-py3-none-any.whl (1.9 MB) 07:40:09 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 07:40:09 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 07:40:09 Installing collected packages: pillow, chardet, reportlab 07:40:10 Successfully installed chardet-5.2.0 pillow-10.2.0 reportlab-4.1.0 07:40:10 + pip install omego 07:40:11 Collecting omego 07:40:11 Using cached omego-0.7.0-py3-none-any.whl 07:40:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 07:40:11 Collecting yaclifw>=0.1.1 (from omego) 07:40:11 Using cached yaclifw-0.2.0-py3-none-any.whl 07:40:11 Collecting six (from yaclifw>=0.1.1->omego) 07:40:11 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 07:40:11 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 07:40:11 Installing collected packages: six, yaclifw, omego 07:40:11 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 07:40:11 + pip install tables 07:40:12 Collecting tables 07:40:12 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 07:40:12 Collecting numpy>=1.19.0 (from tables) 07:40:12 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 07:40:12 Collecting numexpr>=2.6.2 (from tables) 07:40:12 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) 07:40:12 Collecting packaging (from tables) 07:40:12 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) 07:40:12 Collecting py-cpuinfo (from tables) 07:40:12 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 07:40:12 Collecting blosc2>=2.3.0 (from tables) 07:40:12 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 07:40:12 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 07:40:12 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 07:40:12 Collecting msgpack (from blosc2>=2.3.0->tables) 07:40:12 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 07:40:12 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 07:40:12 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 07:40:12 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB) 07:40:12 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 07:40:12 Using cached packaging-24.0-py3-none-any.whl (53 kB) 07:40:12 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 07:40:12 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 07:40:12 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 07:40:13 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 07:40:15 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2 07:40:16 + pip install jinja2 07:40:16 Collecting jinja2 07:40:16 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) 07:40:16 Collecting MarkupSafe>=2.0 (from jinja2) 07:40:16 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 07:40:16 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) 07:40:16 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 07:40:16 Installing collected packages: MarkupSafe, jinja2 07:40:16 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3 07:40:16 + pip install omero-py 07:40:17 Collecting omero-py 07:40:17 Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB) 07:40:17 Collecting urllib3<2 (from omero-py) 07:40:17 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) 07:40:17 Collecting appdirs (from omero-py) 07:40:17 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 07:40:17 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 07:40:17 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4) 07:40:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.2.0) 07:40:17 Collecting PyYAML (from omero-py) 07:40:17 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 07:40:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 07:40:17 Collecting requests (from omero-py) 07:40:17 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) 07:40:17 Collecting portalocker (from omero-py) 07:40:17 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB) 07:40:17 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 07:40:17 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 07:40:17 Collecting idna<4,>=2.5 (from requests->omero-py) 07:40:17 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) 07:40:17 Collecting certifi>=2017.4.17 (from requests->omero-py) 07:40:17 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) 07:40:17 Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB) 07:40:17 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 07:40:17 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 07:40:17 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB) 07:40:17 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 07:40:17 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 07:40:17 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) 07:40:17 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 07:40:17 Using cached idna-3.6-py3-none-any.whl (61 kB) 07:40:18 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py 07:40:20 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18 07:40:20 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 07:40:20 Collecting omero-metadata 07:40:20 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-0kvrcvsu/omero-metadata_cf6b22eff7ca412681c692f61af62656 07:40:20 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-0kvrcvsu/omero-metadata_cf6b22eff7ca412681c692f61af62656 07:40:21 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit b7565ded6846dd0245a39241b440e1a5be134210 07:40:21 Installing build dependencies: started 07:40:23 Installing build dependencies: finished with status 'done' 07:40:23 Getting requirements to build wheel: started 07:40:23 Getting requirements to build wheel: finished with status 'done' 07:40:23 Installing backend dependencies: started 07:40:24 Installing backend dependencies: finished with status 'done' 07:40:24 Preparing metadata (pyproject.toml): started 07:40:24 Preparing metadata (pyproject.toml): finished with status 'done' 07:40:24 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.0) 07:40:24 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 07:40:24 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3) 07:40:24 Collecting pandas (from omero-metadata) 07:40:24 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 07:40:24 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18) 07:40:24 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 07:40:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 07:40:24 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 07:40:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.2.0) 07:40:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 07:40:24 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0) 07:40:24 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2) 07:40:24 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 07:40:24 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 07:40:24 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 07:40:24 Collecting pytz>=2020.1 (from pandas->omero-metadata) 07:40:24 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 07:40:24 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 07:40:24 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 07:40:24 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 07:40:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 07:40:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.6) 07:40:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2) 07:40:25 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB) 07:40:25 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 07:40:25 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 07:40:25 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 07:40:25 Building wheels for collected packages: omero-metadata 07:40:25 Building wheel for omero-metadata (pyproject.toml): started 07:40:25 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 07:40:25 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=fe0003616e4e6cba601a26fb6df1fa36d26fef03ac1d8e66a4ddbf574f568c71 07:40:25 Stored in directory: /tmp/pip-ephem-wheel-cache-fh0y58ng/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 07:40:25 Successfully built omero-metadata 07:40:25 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 07:40:30 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.1 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 07:40:30 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 07:40:30 Collecting omero-cli-render 07:40:30 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-rouoon65/omero-cli-render_d891625c060c41f3ba47ccfd05cbf70c 07:40:30 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-rouoon65/omero-cli-render_d891625c060c41f3ba47ccfd05cbf70c 07:40:31 Running command git checkout -b merge_ci --track origin/merge_ci 07:40:32 Switched to a new branch 'merge_ci' 07:40:32 branch 'merge_ci' set up to track 'origin/merge_ci'. 07:40:32 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 893d3c4d6403b666ac141e324f855c2b4175f247 07:40:32 Installing build dependencies: started 07:40:34 Installing build dependencies: finished with status 'done' 07:40:34 Getting requirements to build wheel: started 07:40:34 Getting requirements to build wheel: finished with status 'done' 07:40:34 Installing backend dependencies: started 07:40:35 Installing backend dependencies: finished with status 'done' 07:40:35 Preparing metadata (pyproject.toml): started 07:40:35 Preparing metadata (pyproject.toml): finished with status 'done' 07:40:35 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 07:40:35 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.0) 07:40:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0) 07:40:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18) 07:40:35 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 07:40:35 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 07:40:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.2.0) 07:40:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 07:40:35 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0) 07:40:35 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2) 07:40:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 07:40:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.6) 07:40:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2) 07:40:35 Building wheels for collected packages: omero-cli-render 07:40:35 Building wheel for omero-cli-render (pyproject.toml): started 07:40:35 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 07:40:35 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=1ac4d05683febfb61cb48e8ee09756f153ae592d19e3634665422200cc788967 07:40:35 Stored in directory: /tmp/pip-ephem-wheel-cache-ssoysmhs/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 07:40:35 Successfully built omero-cli-render 07:40:35 Installing collected packages: omero-cli-render 07:40:35 Successfully installed omero-cli-render-0.8.1.dev0 07:40:35 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 07:40:36 Collecting omero-cli-duplicate 07:40:36 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-9vke0jbi/omero-cli-duplicate_ec20ef6c3d444d0b85520b216d599e0b 07:40:36 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-9vke0jbi/omero-cli-duplicate_ec20ef6c3d444d0b85520b216d599e0b 07:40:37 Running command git checkout -b merge_ci --track origin/merge_ci 07:40:37 Switched to a new branch 'merge_ci' 07:40:37 branch 'merge_ci' set up to track 'origin/merge_ci'. 07:40:37 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1bf3e75187fb609b30478610750cc394889da0b5 07:40:37 Installing build dependencies: started 07:40:39 Installing build dependencies: finished with status 'done' 07:40:39 Getting requirements to build wheel: started 07:40:39 Getting requirements to build wheel: finished with status 'done' 07:40:39 Installing backend dependencies: started 07:40:40 Installing backend dependencies: finished with status 'done' 07:40:40 Preparing metadata (pyproject.toml): started 07:40:40 Preparing metadata (pyproject.toml): finished with status 'done' 07:40:40 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.0) 07:40:40 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18) 07:40:40 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 07:40:40 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 07:40:40 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 07:40:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.2.0) 07:40:40 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 07:40:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 07:40:40 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0) 07:40:40 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2) 07:40:40 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 07:40:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.6) 07:40:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2) 07:40:40 Building wheels for collected packages: omero-cli-duplicate 07:40:40 Building wheel for omero-cli-duplicate (pyproject.toml): started 07:40:40 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 07:40:40 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=13f0a3a722c8cd267e5e6334fe8e7efe789f286698beaf5793ba2ea317cf978b 07:40:40 Stored in directory: /tmp/pip-ephem-wheel-cache-4k1d1i6o/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 07:40:40 Successfully built omero-cli-duplicate 07:40:40 Installing collected packages: omero-cli-duplicate 07:40:40 Successfully installed omero-cli-duplicate-0.4.1.dev0 07:40:41 + pip install omero-certificates 07:40:41 Collecting omero-certificates 07:40:41 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 07:40:41 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.0) 07:40:41 Collecting distro==1.8.0 (from omero-certificates) 07:40:41 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 07:40:41 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18) 07:40:41 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 07:40:41 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 07:40:41 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 07:40:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.2.0) 07:40:41 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 07:40:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 07:40:41 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0) 07:40:41 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2) 07:40:41 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 07:40:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.6) 07:40:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2) 07:40:41 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 07:40:41 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 07:40:41 Installing collected packages: distro, omero-certificates 07:40:41 Successfully installed distro-1.8.0 omero-certificates-0.3.2 07:40:41 + for x in *.tar.gz 07:40:41 + pip install -U omero-dropbox-5.6.3.dev0.tar.gz 07:40:42 Processing ./omero-dropbox-5.6.3.dev0.tar.gz 07:40:42 Installing build dependencies: started 07:40:43 Installing build dependencies: finished with status 'done' 07:40:43 Getting requirements to build wheel: started 07:40:44 Getting requirements to build wheel: finished with status 'done' 07:40:44 Installing backend dependencies: started 07:40:44 Installing backend dependencies: finished with status 'done' 07:40:44 Preparing metadata (pyproject.toml): started 07:40:45 Preparing metadata (pyproject.toml): finished with status 'done' 07:40:45 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.0) 07:40:45 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18) 07:40:45 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4) 07:40:45 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0) 07:40:45 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4) 07:40:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.2.0) 07:40:45 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1) 07:40:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5) 07:40:45 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0) 07:40:45 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2) 07:40:45 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2) 07:40:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.6) 07:40:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2) 07:40:45 Building wheels for collected packages: omero-dropbox 07:40:45 Building wheel for omero-dropbox (pyproject.toml): started 07:40:45 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 07:40:45 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=4525aee3b5ae34dac427ca06b4a9c7f4bb6f16c7ea22093d0d24068be99e9821 07:40:45 Stored in directory: /home/omero/.cache/pip/wheels/a5/63/29/4452e52704e5ad491f397a0013b20ebb9d413ceb110f8101d1 07:40:45 Successfully built omero-dropbox 07:40:45 Installing collected packages: omero-dropbox 07:40:45 Successfully installed omero-dropbox-5.6.3.dev0 07:40:45 + for x in *.tar.gz 07:40:45 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 07:40:46 Processing ./omero_marshal-0.9.1.dev0.tar.gz 07:40:46 Installing build dependencies: started 07:40:47 Installing build dependencies: finished with status 'done' 07:40:47 Getting requirements to build wheel: started 07:40:47 Getting requirements to build wheel: finished with status 'done' 07:40:47 Installing backend dependencies: started 07:40:48 Installing backend dependencies: finished with status 'done' 07:40:48 Preparing metadata (pyproject.toml): started 07:40:48 Preparing metadata (pyproject.toml): finished with status 'done' 07:40:48 Building wheels for collected packages: omero_marshal 07:40:48 Building wheel for omero_marshal (pyproject.toml): started 07:40:49 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 07:40:49 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=c313fa16d325b2849470a375dc90561d1352df3721f08465701bd6922e58ac85 07:40:49 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 07:40:49 Successfully built omero_marshal 07:40:49 Installing collected packages: omero_marshal 07:40:49 Successfully installed omero_marshal-0.9.1.dev0 07:40:49 + for x in *.tar.gz 07:40:49 + pip install -U omero-py-5.19.1.dev0.tar.gz 07:40:50 Processing ./omero-py-5.19.1.dev0.tar.gz 07:40:50 Installing build dependencies: started 07:40:51 Installing build dependencies: finished with status 'done' 07:40:51 Getting requirements to build wheel: started 07:40:52 Getting requirements to build wheel: finished with status 'done' 07:40:52 Installing backend dependencies: started 07:40:53 Installing backend dependencies: finished with status 'done' 07:40:53 Preparing metadata (pyproject.toml): started 07:40:53 Preparing metadata (pyproject.toml): finished with status 'done' 07:40:53 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18) 07:40:53 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4) 07:40:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0) 07:40:53 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4) 07:40:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0) 07:40:53 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1) 07:40:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5) 07:40:53 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0) 07:40:53 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2) 07:40:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2) 07:40:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6) 07:40:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2) 07:40:53 Building wheels for collected packages: omero-py 07:40:53 Building wheel for omero-py (pyproject.toml): started 07:40:54 Building wheel for omero-py (pyproject.toml): finished with status 'done' 07:40:54 Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781647 sha256=04916ea2fa4bec68c4a4901ce0ecdb983d2dd5f8dc6643cd788e9c06af51e22d 07:40:54 Stored in directory: /home/omero/.cache/pip/wheels/52/ce/ea/f5d1427ab67c2783e3f124f0ebf8311109c5ac331893a591ad 07:40:54 Successfully built omero-py 07:40:54 Installing collected packages: omero-py 07:40:54 Attempting uninstall: omero-py 07:40:54 Found existing installation: omero-py 5.19.0 07:40:54 Uninstalling omero-py-5.19.0: 07:40:55 Successfully uninstalled omero-py-5.19.0 07:40:56 Successfully installed omero-py-5.19.1.dev0 07:40:56 + for x in *.tar.gz 07:40:56 + pip install -U omero-scripts-5.8.1.dev0.tar.gz 07:40:57 Processing ./omero-scripts-5.8.1.dev0.tar.gz 07:40:57 Installing build dependencies: started 07:40:59 Installing build dependencies: finished with status 'done' 07:40:59 Getting requirements to build wheel: started 07:40:59 Getting requirements to build wheel: finished with status 'done' 07:40:59 Installing backend dependencies: started 07:41:00 Installing backend dependencies: finished with status 'done' 07:41:00 Preparing metadata (pyproject.toml): started 07:41:00 Preparing metadata (pyproject.toml): finished with status 'done' 07:41:00 Building wheels for collected packages: omero-scripts 07:41:00 Building wheel for omero-scripts (pyproject.toml): started 07:41:00 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 07:41:00 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=1b5a2f27e122c3a1c2cdb05dfed3c707537e9b0f1f2b48a667deaf1f9b16a25d 07:41:00 Stored in directory: /home/omero/.cache/pip/wheels/ef/a0/80/e3393129cedc64a3ad2b8c2fa437d83a3d318cba65d425f5cf 07:41:00 Successfully built omero-scripts 07:41:00 Installing collected packages: omero-scripts 07:41:00 Successfully installed omero-scripts-5.8.1.dev0 07:41:00 + for x in *.tar.gz 07:41:00 + pip install -U omero-web-5.25.1.dev0.tar.gz 07:41:01 Processing ./omero-web-5.25.1.dev0.tar.gz 07:41:01 Installing build dependencies: started 07:41:03 Installing build dependencies: finished with status 'done' 07:41:03 Getting requirements to build wheel: started 07:41:03 Getting requirements to build wheel: finished with status 'done' 07:41:03 Installing backend dependencies: started 07:41:04 Installing backend dependencies: finished with status 'done' 07:41:04 Preparing metadata (pyproject.toml): started 07:41:04 Preparing metadata (pyproject.toml): finished with status 'done' 07:41:04 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0) 07:41:04 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0) 07:41:04 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 07:41:04 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0) 07:41:04 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB) 07:41:04 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0) 07:41:04 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 07:41:04 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0) 07:41:04 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 07:41:04 Collecting django-csp (from omero-web==5.25.1.dev0) 07:41:04 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 07:41:04 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0) 07:41:04 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB) 07:41:04 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0) 07:41:04 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) 07:41:04 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0) 07:41:04 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0) 07:41:04 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1) 07:41:04 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2) 07:41:04 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0) 07:41:04 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 07:41:04 Using cached asgiref-3.7.2-py3-none-any.whl.metadata (9.2 kB) 07:41:05 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 07:41:05 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB) 07:41:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18) 07:41:05 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4) 07:41:05 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0) 07:41:05 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4) 07:41:05 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1) 07:41:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5) 07:41:05 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0) 07:41:05 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 07:41:05 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB) 07:41:05 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2) 07:41:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6) 07:41:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2) 07:41:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 07:41:05 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 07:41:05 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 07:41:05 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB) 07:41:05 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB) 07:41:05 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB) 07:41:05 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 07:41:05 Using cached asgiref-3.7.2-py3-none-any.whl (24 kB) 07:41:05 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) 07:41:05 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB) 07:41:05 Building wheels for collected packages: omero-web 07:41:05 Building wheel for omero-web (pyproject.toml): started 07:41:06 Building wheel for omero-web (pyproject.toml): finished with status 'done' 07:41:06 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2769827 sha256=5644e8a702c145284377619e023e9d9ee0b597c771e1ea1bd4efb288e5732bbc 07:41:06 Stored in directory: /home/omero/.cache/pip/wheels/c5/4f/aa/011f4ecfdcda915571d213b068a736fbddf1b36b2e590de11a 07:41:06 Successfully built omero-web 07:41:06 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 07:41:09 Successfully installed Django-4.2.11 asgiref-3.7.2 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0 07:41:09 + omero config set omero.db.name OMERO-server 07:41:10 + omero config set omero.db.host pg 07:41:11 + omero config set omero.db.user postgres 07:41:13 + omero config set omero.data.dir /home/omero/omero-server-data 07:41:14 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 07:41:15 + omero config set omero.db.poolsize 25 07:41:17 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 07:41:18 + omero config set omero.security.trustStorePassword changeit 07:41:19 + omero config set omero.mail.config true 07:41:20 + omero certificates 07:41:22 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 07:41:22 certificates created: /home/omero/omero-server-data/certs/server.key /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 07:41:22 + '[' true = true ']' 07:41:22 + createdb -h pg -U postgres OMERO-server 07:41:23 + omego db init --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 07:41:23 2024-03-15 07:41:23,884 [omego.extern] INFO Executing : omero version 07:41:24 OMERO.py version: 07:41:25 OMERO.server version: 07:41:25 5.6.3-435-12cd9157e9-ice36 07:41:25 5.19.1.dev0 07:41:25 2024-03-15 07:41:25,226 [omego.extern] INFO Completed [1.342 s] 07:41:25 2024-03-15 07:41:25,227 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 07:41:25 2024-03-15 07:41:25,227 [omego.extern] INFO Running [current environment]: omero config get --show-password 07:41:25 2024-03-15 07:41:25,227 [omego.extern] INFO Executing : omero config get --show-password 07:41:26 2024-03-15 07:41:26,487 [omego.extern] INFO Completed [1.261 s] 07:41:26 2024-03-15 07:41:26,488 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 07:41:26 2024-03-15 07:41:26,488 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 07:41:26 2024-03-15 07:41:26,540 [omego.extern] INFO Completed [0.052 s] 07:41:26 2024-03-15 07:41:26,540 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 07:41:26 07:41:26 2024-03-15 07:41:26,540 [omego.extern] INFO Running [current environment]: omero config get --show-password 07:41:26 2024-03-15 07:41:26,540 [omego.extern] INFO Executing : omero config get --show-password 07:41:27 2024-03-15 07:41:27,844 [omego.extern] INFO Completed [1.304 s] 07:41:27 2024-03-15 07:41:27,844 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 07:41:27 2024-03-15 07:41:27,845 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 07:41:27 2024-03-15 07:41:27,857 [omego.extern] INFO Completed [0.012 s] 07:41:27 2024-03-15 07:41:27,857 [ omego.db] INFO Creating SQL: omero-20240315-074127-857318.sql 07:41:27 2024-03-15 07:41:27,857 [omego.extern] INFO Running [current environment]: omero db script -f omero-20240315-074127-857318.sql omero 07:41:27 2024-03-15 07:41:27,857 [omego.extern] INFO Executing : omero db script -f omero-20240315-074127-857318.sql omero 07:41:30 2024-03-15 07:41:30,731 [omego.extern] INFO Completed [2.874 s] 07:41:30 2024-03-15 07:41:30,732 [ omego.db] INFO Creating database using omero-20240315-074127-857318.sql 07:41:30 2024-03-15 07:41:30,732 [omego.extern] INFO Running [current environment]: omero config get --show-password 07:41:30 2024-03-15 07:41:30,732 [omego.extern] INFO Executing : omero config get --show-password 07:41:31 2024-03-15 07:41:31,987 [omego.extern] INFO Completed [1.255 s] 07:41:31 2024-03-15 07:41:31,988 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 07:41:31 2024-03-15 07:41:31,988 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -f omero-20240315-074127-857318.sql 07:41:34 2024-03-15 07:41:34,370 [omego.extern] INFO Completed [2.382 s] 07:41:34 2024-03-15 07:41:34,370 [ omego.db] WARNI stderr: b'psql:omero-20240315-074127-857318.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"\npsql:omero-20240315-074127-857318.sql:4712: NOTICE: identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"\npsql:omero-20240315-074127-857318.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"\n' 07:41:34 + export LANG=en_US.UTF-8 07:41:34 + LANG=en_US.UTF-8 07:41:34 + export LANGUAGE=en_US:en 07:41:34 + LANGUAGE=en_US:en 07:41:34 + export LC_ALL=en_US.UTF-8 07:41:34 + LC_ALL=en_US.UTF-8 07:41:34 + BUILD_ID=DONT_KILL_ME 07:41:34 + omero admin start 07:41:43 No descriptor given. Using etc/grid/default.xml 07:41:53 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 07:41:53 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 07:41:53 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 07:41:53 Waiting on startup. Use CTRL-C to exit 07:41:53 + omero admin waitup 07:41:54 Waiting on startup. Use CTRL-C to exit 07:41:54 + omero admin diagnostics 07:41:56 07:41:56 ================================================================================ 07:41:56 OMERO Diagnostics (admin) 07:41:56 ================================================================================ 07:41:56 07:41:56 Commands: java -version 11.0.22 (/usr/bin/java) 07:41:56 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 07:41:56 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 07:41:56 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 07:41:56 Commands: psql --version 16.2 (/usr/bin/psql) 07:41:56 Commands: openssl version 3.0.71 (/usr/bin/openssl) 07:41:56 07:41:56 Component: OMERO.py 5.19.1.dev0 07:41:56 Component: OMERO.server 5.6.3-435-12cd9157e9-ice36 07:41:56 07:41:56 Server: icegridnode running 07:41:56 Server: Blitz-0 active (pid = 4572, enabled) 07:41:56 Server: DropBox activating (enabled) 07:41:56 Server: FileServer active (pid = 4669, enabled) 07:41:56 Server: Indexer-0 activating (enabled) 07:41:56 Server: MonitorServer active (pid = 4604, enabled) 07:41:56 Server: OMERO.Glacier2 active (pid = 4616, enabled) 07:41:56 Server: OMERO.IceStorm active (pid = 4627, enabled) 07:41:56 Server: PixelData-0 activating (enabled) 07:41:56 Server: Processor-0 activating (enabled) 07:41:56 Server: Tables-0 activating (enabled) 07:41:56 Server: TestDropBox inactive (enabled) 07:41:56 07:41:56 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 07:41:56 Log files: Blitz-0.log 132.9 KB errors=0 warnings=1 07:41:56 Log files: DropBox.log 1.4 KB 07:41:56 Log files: FileServer.log 114 B 07:41:56 Log files: Indexer-0.log 598 B 07:41:56 Log files: MonitorServer.log 1.1 KB 07:41:56 Log files: PixelData-0.log 599 B 07:41:56 Log files: Processor-0.log 281 B 07:41:56 Log files: Tables-0.log 281 B 07:41:56 Log files: TestDropBox.log n/a 07:41:56 Log files: master.err 2.1 KB 07:41:56 Log files: master.out 41.5 KB 07:41:56 Log files: Total size 0.18 MB 07:41:56 07:41:56 07:41:56 Environment:OMERO_HOME=(unset) 07:41:56 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 07:41:56 Environment:OMERO_NODE=(unset) 07:41:56 Environment:OMERO_MASTER=(unset) 07:41:56 Environment:OMERO_USERDIR=(unset) 07:41:56 Environment:OMERO_TMPDIR=(unset) 07:41:56 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:41:56 Environment:PYTHONPATH=(unset) 07:41:56 Environment:ICE_HOME=/opt/ice-3.6.5 07:41:56 Environment:LD_LIBRARY_PATH=(unset) 07:41:56 Environment:DYLD_LIBRARY_PATH=(unset) 07:41:56 07:41:56 OMERO SSL port:4064 07:41:56 OMERO TCP port:4063 07:41:56 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 07:41:56 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 07:41:56 07:41:56 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 07:41:56 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 07:41:56 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 07:41:56 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 07:41:56 07:41:56 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 15 March 2024 947564c0e37abd393eecb3f1c1630261e59f4804 07:41:56 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 15 March 2024 947564c0e37abd393eecb3f1c1630261e59f4804 07:41:56 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 15 March 2024 947564c0e37abd393eecb3f1c1630261e59f4804 07:41:56 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.2-SNAPSHOT 15 March 2024 1bfae037496ac3907ba6f6fee82c5d14161060d2 07:41:56 Jar: lib/server/ome-common.jar OME Common Java 6.0.22-SNAPSHOT 15 March 2024 1bfae037496ac3907ba6f6fee82c5d14161060d2 07:41:56 Jar: lib/server/ome-jai.jar OME JAI 0.1.3-SNAPSHOT 15 March 2024 1bfae037496ac3907ba6f6fee82c5d14161060d2 07:41:56 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.3-SNAPSHOT 15 March 2024 1bfae037496ac3907ba6f6fee82c5d14161060d2 07:41:56 Jar: lib/server/ome-poi.jar OME POI 5.3.9-SNAPSHOT 15 March 2024 1bfae037496ac3907ba6f6fee82c5d14161060d2 07:41:56 Jar: lib/server/ome-xml.jar OME XML library 6.3.5-SNAPSHOT 15 March 2024 1bfae037496ac3907ba6f6fee82c5d14161060d2 07:41:56 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT 07:41:56 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT 07:41:56 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT 07:41:56 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT 07:41:56 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT 07:41:56 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT 07:41:56 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT 07:41:57 + deactivate 07:41:57 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 07:41:57 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:41:57 + export PATH 07:41:57 + unset _OLD_VIRTUAL_PATH 07:41:57 + '[' -n '' ']' 07:41:57 + '[' -n /bin/bash -o -n '' ']' 07:41:57 + hash -r 07:41:57 + '[' -n '' ']' 07:41:57 + unset VIRTUAL_ENV 07:41:57 + '[' '!' '' = nondestructive ']' 07:41:57 + unset -f deactivate 07:41:57 Finished: SUCCESS