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Started by upstream project "BIOFORMATS-test-repo" build number 270 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3125620159336200224.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42599_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:36:37,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:36:37,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 11:36:37,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:36:37,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:36:37,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:36:37,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:36:37,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:36:37,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:36:37,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:36:37,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:36:37,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:36:37,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:36:37,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:36:37,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:36:37,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:36:37,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:36:37,936 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:36:37,936 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:36:37,936 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:36:37,937 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:36:37,937 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 11:36:37,937 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 11:36:37,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 11:36:37,947] [main] java.version = 17.0.2 [testng] 11:36:37,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:36:37,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:37,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_11-36-37.log] [testng] 11:36:37,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 11:36:37,996] [main] testng.directory = /data [testng] [2024-11-27 11:36:37,996] [main] testng.configDirectory = /config [testng] [2024-11-27 11:36:38,005] [main] testng.multiplier = 1.0 [testng] [2024-11-27 11:36:38,006] [main] testng.in-memory = false [testng] [2024-11-27 11:36:38,006] [main] testng.allow-missing = false [testng] [2024-11-27 11:36:38,006] [main] user.language = en [testng] [2024-11-27 11:36:38,006] [main] user.country = ${user.country} [testng] [2024-11-27 11:36:38,006] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 11:36:41,924] [main] ---------------------------------------- [testng] [2024-11-27 11:36:41,924] [main] Total files: 103 [testng] [2024-11-27 11:36:41,924] [main] Scan time: 3.918 s (38 ms/file) [testng] [2024-11-27 11:36:41,925] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 11:36:57,959] [pool-1-thread-1] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] 11:36:57,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:36:57,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:57,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_11-36-57.log] [testng] 11:36:57,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b400631 - End of configuration. [testng] [2024-11-27 11:36:58,240] [pool-1-thread-12] Initializing /data/melissa/annotation-test.tif: [testng] 11:36:58,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:36:58,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:58,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_11-36-58.log] [testng] 11:36:58,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@401eee8e - End of configuration. [testng] [2024-11-27 11:36:58,456] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] 11:36:58,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:36:58,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:58,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_11-36-58.log] [testng] 11:36:58,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8618e29 - End of configuration. [testng] [2024-11-27 11:36:58,491] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] 11:36:58,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:36:58,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:58,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_11-36-58.log] [testng] 11:36:58,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@176a904c - End of configuration. [testng] [2024-11-27 11:36:58,531] [pool-1-thread-9] Initializing /data/jay/dnasample1.dm3: [testng] 11:36:58,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:36:58,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:58,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_11-36-58.log] [testng] 11:36:58,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54fe2af5 - End of configuration. [testng] [2024-11-27 11:36:58,612] [pool-1-thread-8] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] 11:36:58,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:36:58,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:58,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_11-36-58.log] [testng] 11:36:58,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48b38445 - End of configuration. [testng] [2024-11-27 11:36:59,023] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] 11:36:59,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:36:59,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:59,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_11-36-59.log] [testng] 11:36:59,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fc30979 - End of configuration. [testng] [2024-11-27 11:36:59,082] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] 11:36:59,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:36:59,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:59,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_11-36-59.log] [testng] 11:36:59,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fe1a735 - End of configuration. [testng] [2024-11-27 11:36:59,147] [pool-1-thread-5] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] 11:36:59,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:36:59,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:59,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_11-36-59.log] [testng] 11:36:59,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@419a5f66 - End of configuration. [testng] [2024-11-27 11:36:59,539] [pool-1-thread-4] Initializing /data/ofra/lowloss.dm3: [testng] 11:36:59,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:36:59,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:59,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_11-36-59.log] [testng] 11:36:59,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1991c92e - End of configuration. [testng] [2024-11-27 11:36:59,587] [pool-1-thread-3] Initializing /data/jay/biosamplefullframe.dm3: [testng] 11:36:59,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:36:59,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:59,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_11-36-59.log] [testng] 11:36:59,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@637c9eff - End of configuration. [testng] [2024-11-27 11:36:59,628] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] 11:36:59,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:36:59,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:36:59,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_11-36-59.log] [testng] 11:36:59,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5305c501 - End of configuration. [testng] [2024-11-27 11:37:02,559] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-11-27 11:37:03,448] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-11-27 11:37:03,637] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-11-27 11:37:04,707] [pool-1-thread-9] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-11-27 11:37:05,536] [pool-1-thread-7] Initializing /data/jay/DMtest2.dm3: [testng] [2024-11-27 11:37:05,813] [pool-1-thread-11] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-11-27 11:37:05,962] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-11-27 11:37:06,078] [pool-1-thread-1] Initializing /data/jay/camtest1.dm3: [testng] [2024-11-27 11:37:06,398] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-11-27 11:37:07,680] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-11-27 11:37:07,800] [pool-1-thread-8] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-11-27 11:37:09,546] [pool-1-thread-3] Initializing /data/jay/dnasample.tif: [testng] [2024-11-27 11:37:11,279] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-11-27 11:37:11,840] [pool-1-thread-9] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-11-27 11:37:13,515] [pool-1-thread-7] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-11-27 11:37:14,052] [pool-1-thread-1] Initializing /data/qa-7642/8.dm4: [testng] [2024-11-27 11:37:15,111] [pool-1-thread-12] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-11-27 11:37:15,666] [pool-1-thread-7] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-11-27 11:37:16,750] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-11-27 11:37:17,689] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-11-27 11:37:18,272] [pool-1-thread-8] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-11-27 11:37:18,827] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-11-27 11:37:19,925] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-11-27 11:37:20,367] [pool-1-thread-10] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-11-27 11:37:21,398] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-11-27 11:37:21,960] [pool-1-thread-8] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-11-27 11:37:22,128] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-11-27 11:37:22,838] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-11-27 11:37:23,618] [pool-1-thread-11] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-11-27 11:37:23,943] [pool-1-thread-1] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-11-27 11:37:24,791] [pool-1-thread-6] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-11-27 11:37:25,477] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-11-27 11:37:25,599] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-11-27 11:37:25,750] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-11-27 11:37:26,629] [pool-1-thread-11] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-11-27 11:37:28,018] [pool-1-thread-10] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-11-27 11:37:28,306] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-11-27 11:37:28,704] [pool-1-thread-8] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-11-27 11:37:29,800] [pool-1-thread-2] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-11-27 11:37:31,077] [pool-1-thread-10] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-11-27 11:37:32,112] [pool-1-thread-12] Initializing /data/qa-21761/example.dm4: [testng] [2024-11-27 11:37:32,494] [pool-1-thread-2] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-11-27 11:37:32,634] [pool-1-thread-6] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-11-27 11:37:32,972] [pool-1-thread-5] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-11-27 11:37:33,861] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-11-27 11:37:34,771] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-11-27 11:37:34,913] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-11-27 11:37:35,237] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-11-27 11:37:35,462] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-11-27 11:37:36,583] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-11-27 11:37:36,680] [pool-1-thread-10] Initializing /data/jay/Carbon.34.dm3: [testng] [2024-11-27 11:37:37,508] [pool-1-thread-4] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-11-27 11:37:37,940] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-11-27 11:37:38,074] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-11-27 11:37:38,187] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-11-27 11:37:38,929] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-11-27 11:37:39,598] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-11-27 11:37:39,739] [pool-1-thread-5] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-11-27 11:37:40,679] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-11-27 11:37:40,960] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-11-27 11:37:41,492] [pool-1-thread-3] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-11-27 11:37:41,774] [pool-1-thread-10] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-11-27 11:37:42,338] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-11-27 11:37:43,068] [pool-1-thread-7] Initializing /data/samples/test-tiles.dm3: [testng] [2024-11-27 11:37:43,155] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-11-27 11:37:43,390] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-11-27 11:37:43,616] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-11-27 11:37:43,778] [pool-1-thread-4] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-11-27 11:37:43,990] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-11-27 11:37:44,743] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-11-27 11:37:45,116] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-11-27 11:37:45,889] [pool-1-thread-1] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-11-27 11:37:46,033] [pool-1-thread-6] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-11-27 11:37:46,347] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-11-27 11:37:46,609] [pool-1-thread-4] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-11-27 11:37:47,791] [pool-1-thread-9] Initializing /data/jay/smallerfile.dm3: [testng] [2024-11-27 11:37:47,909] [pool-1-thread-2] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-11-27 11:37:48,592] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-11-27 11:37:49,493] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-11-27 11:37:49,656] [pool-1-thread-12] Initializing /data/jay/DMtest.dm3: [testng] [2024-11-27 11:37:50,367] [pool-1-thread-11] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-11-27 11:37:51,319] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-11-27 11:37:51,531] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-11-27 11:37:52,244] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-11-27 11:37:52,932] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-11-27 11:37:54,245] [pool-1-thread-5] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 33 seconds Finished: SUCCESS