00:46:27 Started by upstream project "Trigger" build number 139 00:46:27 originally caused by: 00:46:27 Started by timer 00:46:27 Running as SYSTEM 00:46:27 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:46:27 [OMERO-server] $ /bin/bash -xe /tmp/jenkins865234511313707375.sh 00:46:27 + source /home/settings.env 00:46:27 ++ OMERO_DB_HOST=pg 00:46:27 ++ OMERO_DB_USER=postgres 00:46:27 ++ OMERO_DB_PASS= 00:46:27 ++ OMERO_ROOT_PASS=omero 00:46:27 ++ OMERO_DATA_DIR=/OMERO 00:46:27 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:46:27 + OMERO_DB_NAME=OMERO-server 00:46:27 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:46:27 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:46:27 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:46:27 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:46:27 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:46:27 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:46:27 ++ deactivate nondestructive 00:46:27 ++ '[' -n '' ']' 00:46:27 ++ '[' -n '' ']' 00:46:27 ++ '[' -n /bin/bash -o -n '' ']' 00:46:27 ++ hash -r 00:46:27 ++ '[' -n '' ']' 00:46:27 ++ unset VIRTUAL_ENV 00:46:27 ++ '[' '!' nondestructive = nondestructive ']' 00:46:27 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:46:27 ++ export VIRTUAL_ENV 00:46:27 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:27 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:27 ++ export PATH 00:46:27 ++ '[' -n '' ']' 00:46:27 ++ '[' -z '' ']' 00:46:27 ++ _OLD_VIRTUAL_PS1= 00:46:27 ++ PS1='(.venv3) ' 00:46:27 ++ export PS1 00:46:27 ++ '[' -n /bin/bash -o -n '' ']' 00:46:27 ++ hash -r 00:46:27 + omero admin stop 00:46:29 Waiting on shutdown. Use CTRL-C to exit 00:46:29 .+ sleep 5 00:46:44 + deactivate 00:46:44 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:46:44 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:44 + export PATH 00:46:44 + unset _OLD_VIRTUAL_PATH 00:46:44 + '[' -n '' ']' 00:46:44 + '[' -n /bin/bash -o -n '' ']' 00:46:44 + hash -r 00:46:44 + '[' -n '' ']' 00:46:44 + unset VIRTUAL_ENV 00:46:44 + '[' '!' '' = nondestructive ']' 00:46:44 + unset -f deactivate 00:46:44 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:46:45 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:46:50 + '[' false = true ']' 00:46:50 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:46:50 Skipping PURGE_DATA:CleanDbAndRepo 00:46:50 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.4.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:46:54 Copied 1 artifact from "OMERO-build" build number 118 00:46:54 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 117 00:46:54 Copied 2 artifacts from "OMERO-build-build" build number 120 00:46:54 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16938118149121531934.sh 00:46:54 + source /home/settings.env 00:46:54 ++ OMERO_DB_HOST=pg 00:46:54 ++ OMERO_DB_USER=postgres 00:46:54 ++ OMERO_DB_PASS= 00:46:54 ++ OMERO_ROOT_PASS=omero 00:46:54 ++ OMERO_DATA_DIR=/OMERO 00:46:54 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:46:54 + OMERO_DB_NAME=OMERO-server 00:46:54 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:46:54 + mkdir -p /home/omero/omero-server-data 00:46:54 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:46:54 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:46:54 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:46:54 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:46:54 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:46:54 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:46:54 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:46:54 ++ ls OMERO.server-5.6.3-481-b86becb6dd-ice36.zip 00:46:54 + ZIP=OMERO.server-5.6.3-481-b86becb6dd-ice36.zip 00:46:54 + '[' '!' -z '' ']' 00:46:54 + DIST=OMERO.server-5.6.3-481-b86becb6dd-ice36 00:46:54 + unzip OMERO.server-5.6.3-481-b86becb6dd-ice36.zip 00:46:54 Archive: OMERO.server-5.6.3-481-b86becb6dd-ice36.zip 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/blitz/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/grid/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/profiles/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/error/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/luts/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/luts/janelia/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/luts/ncsa_paledit/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/luts/wcif/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/analysis_scripts/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/annotation_scripts/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/export_scripts/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/figure_scripts/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/import_scripts/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/util_scripts/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/server/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/misc/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__1/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__10/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__11/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__2/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__3/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__4/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__5/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__6/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__7/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__8/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__9/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__4/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__5/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__6/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__7/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.1__0/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/t/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.3__0/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.4__0/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4__0/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.0__0/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.2__0/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__1/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__2/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__3/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/ 00:46:54 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/var/ 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/LICENSE.txt 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/backup.cfg 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/blitz/mail-senders.example 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/blitz/mail-server.example 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/build.properties 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/env.bat 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/env.sh 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/hibernate.properties 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/ice.config 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/logback-cli.xml 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/logback-indexing-cli.xml 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/logback-indexing.xml 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/logback.xml 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/mime.types 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/node1.cfg 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/node2.cfg 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/omero.properties 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/profiles/psql 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/rollover.cfg 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/Windows.cfg 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/error/maintainance.html 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/README 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/default.xml 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/templates.xml 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/windefault.xml 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/ice.config 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/internal.cfg 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/master.cfg 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/robot.template 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/testdropbox.config 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/history.rst 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/OMEZarrReader.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/activation.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aggdesigner-algorithm.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aircompressor.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/annotations.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/antlr.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aopalliance.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/avatica-core.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/avatica-metrics.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aws-java-sdk-core.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aws-java-sdk-kms.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aws-java-sdk-s3.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/base.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-all.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-anim.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-awt-util.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-bridge.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-codec.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-constants.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-css.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-dom.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-ext.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-extension.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-gui-util.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-gvt.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-i18n.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-parser.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-rasterizer-ext.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-rasterizer.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-script.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-slideshow.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-squiggle-ext.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-squiggle.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-svg-dom.jar 00:46:54 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-svgbrowser.jar 00:46:54 inflating: 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OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__5/OMERO3__4.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__6/OMERO3__5.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__7/OMERO3__6.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/schema.sql 00:46:57 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/views.sql 00:46:57 + rm -f OMERO.server-5.6.3-481-b86becb6dd-ice36.zip 00:46:57 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-481-b86becb6dd-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:46:57 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:46:57 ++ deactivate nondestructive 00:46:57 ++ '[' -n '' ']' 00:46:57 ++ '[' -n '' ']' 00:46:57 ++ '[' -n /bin/bash -o -n '' ']' 00:46:57 ++ hash -r 00:46:57 ++ '[' -n '' ']' 00:46:57 ++ unset VIRTUAL_ENV 00:46:57 ++ '[' '!' nondestructive = nondestructive ']' 00:46:57 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:46:57 ++ export VIRTUAL_ENV 00:46:57 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:57 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:57 ++ export PATH 00:46:57 ++ '[' -n '' ']' 00:46:57 ++ '[' -z '' ']' 00:46:57 ++ _OLD_VIRTUAL_PS1= 00:46:57 ++ PS1='(.venv3) ' 00:46:57 ++ export PS1 00:46:57 ++ '[' -n /bin/bash -o -n '' ']' 00:46:57 ++ hash -r 00:46:57 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:46:58 Collecting zeroc-ice==3.6.5 00:46:59 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:47:01 Installing collected packages: zeroc-ice 00:47:02 Successfully installed zeroc-ice-3.6.5 00:47:03 + pip install -U pip future 00:47:03 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:47:04 Collecting pip 00:47:04 Using cached pip-24.1.2-py3-none-any.whl (1.8 MB) 00:47:04 Collecting future 00:47:04 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:47:04 Installing collected packages: pip, future 00:47:04 Attempting uninstall: pip 00:47:04 Found existing installation: pip 21.2.3 00:47:04 Uninstalling pip-21.2.3: 00:47:04 Successfully uninstalled pip-21.2.3 00:47:06 Successfully installed future-1.0.0 pip-24.1.2 00:47:06 + pip install markdown 00:47:07 Collecting markdown 00:47:07 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 00:47:07 Collecting importlib-metadata>=4.4 (from markdown) 00:47:07 Using cached importlib_metadata-8.0.0-py3-none-any.whl.metadata (4.6 kB) 00:47:07 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 00:47:07 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB) 00:47:07 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 00:47:07 Using cached importlib_metadata-8.0.0-py3-none-any.whl (24 kB) 00:47:07 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB) 00:47:07 Installing collected packages: zipp, importlib-metadata, markdown 00:47:07 Successfully installed importlib-metadata-8.0.0 markdown-3.6 zipp-3.19.2 00:47:07 + pip install reportlab 00:47:08 Collecting reportlab 00:47:08 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB) 00:47:09 Collecting pillow>=9.0.0 (from reportlab) 00:47:09 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 00:47:09 Collecting chardet (from reportlab) 00:47:09 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:47:09 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB) 00:47:09 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 00:47:09 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:47:09 Installing collected packages: pillow, chardet, reportlab 00:47:11 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2 00:47:11 + pip install omego 00:47:12 Collecting omego 00:47:12 Using cached omego-0.7.0-py3-none-any.whl 00:47:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:47:12 Collecting yaclifw>=0.1.1 (from omego) 00:47:12 Using cached yaclifw-0.2.0-py3-none-any.whl 00:47:12 Collecting six (from yaclifw>=0.1.1->omego) 00:47:12 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 00:47:12 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 00:47:12 Installing collected packages: six, yaclifw, omego 00:47:12 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 00:47:12 + pip install tables 00:47:13 Collecting tables 00:47:13 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:47:13 Collecting numpy>=1.19.0 (from tables) 00:47:13 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 00:47:13 Collecting numexpr>=2.6.2 (from tables) 00:47:13 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 00:47:14 Collecting packaging (from tables) 00:47:14 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 00:47:14 Collecting py-cpuinfo (from tables) 00:47:14 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:47:14 Collecting blosc2>=2.3.0 (from tables) 00:47:14 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:47:14 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:47:14 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 00:47:14 Collecting msgpack (from blosc2>=2.3.0->tables) 00:47:14 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 00:47:14 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:47:14 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:47:14 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 00:47:14 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.3 MB) 00:47:15 Using cached packaging-24.1-py3-none-any.whl (53 kB) 00:47:15 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:47:15 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 00:47:15 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 00:47:15 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:47:19 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.0 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 00:47:19 + pip install jinja2 00:47:20 Collecting jinja2 00:47:20 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 00:47:20 Collecting MarkupSafe>=2.0 (from jinja2) 00:47:20 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 00:47:20 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 00:47:20 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 00:47:20 Installing collected packages: MarkupSafe, jinja2 00:47:21 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 00:47:21 + pip install omero-py 00:47:21 Collecting omero-py 00:47:21 Using cached omero_py-5.19.3-py3-none-any.whl.metadata (6.3 kB) 00:47:22 Collecting urllib3<2 (from omero-py) 00:47:22 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB) 00:47:22 Collecting appdirs (from omero-py) 00:47:22 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:47:22 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:47:22 Collecting numpy<2 (from omero-py) 00:47:22 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:47:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0) 00:47:22 Collecting PyYAML (from omero-py) 00:47:22 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:47:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:47:22 Collecting requests (from omero-py) 00:47:22 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 00:47:22 Collecting portalocker (from omero-py) 00:47:22 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 00:47:22 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:47:22 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 00:47:22 Collecting idna<4,>=2.5 (from requests->omero-py) 00:47:22 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) 00:47:23 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:47:23 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB) 00:47:23 Using cached omero_py-5.19.3-py3-none-any.whl (2.8 MB) 00:47:23 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:47:23 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB) 00:47:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:47:23 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 00:47:23 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 00:47:23 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:47:23 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB) 00:47:23 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 00:47:23 Using cached idna-3.7-py3-none-any.whl (66 kB) 00:47:23 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 00:47:23 Attempting uninstall: numpy 00:47:23 Found existing installation: numpy 2.0.0 00:47:24 Uninstalling numpy-2.0.0: 00:47:24 Successfully uninstalled numpy-2.0.0 00:47:30 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.7.4 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.3 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.19 00:47:30 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:47:30 Collecting omero-metadata 00:47:30 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-cj6dehpc/omero-metadata_8d8fad31c1db4c4d81b09ee6c96def60 00:47:30 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-cj6dehpc/omero-metadata_8d8fad31c1db4c4d81b09ee6c96def60 00:47:32 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 175523c6f28cdec8824b8b2954f4ce87ab5ac3b3 00:47:32 Installing build dependencies: started 00:47:34 Installing build dependencies: finished with status 'done' 00:47:34 Getting requirements to build wheel: started 00:47:34 Getting requirements to build wheel: finished with status 'done' 00:47:34 Preparing metadata (pyproject.toml): started 00:47:35 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:35 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.3) 00:47:35 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 00:47:35 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 00:47:35 Collecting pandas (from omero-metadata) 00:47:35 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 00:47:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19) 00:47:35 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:47:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:47:35 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:47:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0) 00:47:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:47:35 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 00:47:35 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 00:47:35 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 00:47:35 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:47:35 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:47:35 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:47:35 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 00:47:35 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:47:35 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 00:47:35 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 00:47:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 00:47:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7) 00:47:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.7.4) 00:47:35 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 00:47:35 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:47:35 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 00:47:36 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 00:47:36 Building wheels for collected packages: omero-metadata 00:47:36 Building wheel for omero-metadata (pyproject.toml): started 00:47:36 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:47:36 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39110 sha256=ad0f319428ba2be21e5721a35b440f42ef9901eadc5d93bba3d5101a71553378 00:47:36 Stored in directory: /tmp/pip-ephem-wheel-cache-tqzh0tql/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:47:36 Successfully built omero-metadata 00:47:36 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:47:44 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 00:47:44 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:47:45 Collecting omero-cli-render 00:47:45 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-x7u25wxn/omero-cli-render_ad73325e4c034ad58b62d5221cc0ab3b 00:47:45 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-x7u25wxn/omero-cli-render_ad73325e4c034ad58b62d5221cc0ab3b 00:47:46 Running command git checkout -b merge_ci --track origin/merge_ci 00:47:46 Switched to a new branch 'merge_ci' 00:47:46 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:47:46 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 00067afe84efaa39a6f0718d8bf3de9e43f1d5af 00:47:46 Installing build dependencies: started 00:47:48 Installing build dependencies: finished with status 'done' 00:47:48 Getting requirements to build wheel: started 00:47:49 Getting requirements to build wheel: finished with status 'done' 00:47:49 Preparing metadata (pyproject.toml): started 00:47:49 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:49 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 00:47:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.3) 00:47:49 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19) 00:47:49 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:47:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:47:49 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:47:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0) 00:47:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:47:49 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 00:47:49 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 00:47:49 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 00:47:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7) 00:47:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.7.4) 00:47:49 Building wheels for collected packages: omero-cli-render 00:47:49 Building wheel for omero-cli-render (pyproject.toml): started 00:47:49 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:47:49 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18031 sha256=dbf173ac03dab3d09a5308c506d48e7141adc7127fc924c9396abcbd6f30a545 00:47:49 Stored in directory: /tmp/pip-ephem-wheel-cache-1i9enmsx/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:47:49 Successfully built omero-cli-render 00:47:49 Installing collected packages: omero-cli-render 00:47:49 Successfully installed omero-cli-render-0.8.1.dev0 00:47:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:47:50 Collecting omero-cli-duplicate 00:47:50 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-lyq3pvrp/omero-cli-duplicate_849ea8638aa64ddfa4b49380f934d8b7 00:47:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-lyq3pvrp/omero-cli-duplicate_849ea8638aa64ddfa4b49380f934d8b7 00:47:51 Running command git checkout -b merge_ci --track origin/merge_ci 00:47:51 Switched to a new branch 'merge_ci' 00:47:51 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:47:51 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit c89b10f9975b57deed2cb778ae000e39a4768326 00:47:51 Installing build dependencies: started 00:47:53 Installing build dependencies: finished with status 'done' 00:47:53 Getting requirements to build wheel: started 00:47:53 Getting requirements to build wheel: finished with status 'done' 00:47:53 Preparing metadata (pyproject.toml): started 00:47:54 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:54 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.3) 00:47:54 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19) 00:47:54 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:47:54 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:47:54 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:47:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0) 00:47:54 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 00:47:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:47:54 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 00:47:54 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 00:47:54 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 00:47:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7) 00:47:54 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.7.4) 00:47:54 Building wheels for collected packages: omero-cli-duplicate 00:47:54 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:47:54 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:47:54 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=5ab2b98f2689c621b064b79b41300b5806e9d3aca99a39e8c14d297dfa986a28 00:47:54 Stored in directory: /tmp/pip-ephem-wheel-cache-ol1yuu1i/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:47:54 Successfully built omero-cli-duplicate 00:47:54 Installing collected packages: omero-cli-duplicate 00:47:54 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:47:54 + pip install omero-certificates 00:47:55 Collecting omero-certificates 00:47:55 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 00:47:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.3) 00:47:55 Collecting distro==1.8.0 (from omero-certificates) 00:47:55 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 00:47:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19) 00:47:55 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:47:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:47:55 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:47:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0) 00:47:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 00:47:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:47:55 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 00:47:55 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 00:47:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 00:47:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7) 00:47:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.7.4) 00:47:55 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 00:47:55 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 00:47:55 Installing collected packages: distro, omero-certificates 00:47:55 Successfully installed distro-1.8.0 omero-certificates-0.3.2 00:47:55 + for x in *.tar.gz 00:47:55 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:47:56 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:47:56 Installing build dependencies: started 00:47:58 Installing build dependencies: finished with status 'done' 00:47:58 Getting requirements to build wheel: started 00:47:58 Getting requirements to build wheel: finished with status 'done' 00:47:58 Preparing metadata (pyproject.toml): started 00:47:58 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:58 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.3) 00:47:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19) 00:47:58 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:47:58 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:47:58 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 00:47:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0) 00:47:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1) 00:47:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:47:58 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 00:47:58 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 00:47:58 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 00:47:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7) 00:47:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.7.4) 00:47:58 Building wheels for collected packages: omero-dropbox 00:47:58 Building wheel for omero-dropbox (pyproject.toml): started 00:47:59 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:47:59 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49055 sha256=1d6bd306ecf92c7b1f1857ad02a93214acdca78cd50c77e778cefb93a2779c1f 00:47:59 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 00:47:59 Successfully built omero-dropbox 00:47:59 Installing collected packages: omero-dropbox 00:47:59 Successfully installed omero-dropbox-5.7.1.dev0 00:47:59 + for x in *.tar.gz 00:47:59 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:48:00 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:48:00 Installing build dependencies: started 00:48:01 Installing build dependencies: finished with status 'done' 00:48:01 Getting requirements to build wheel: started 00:48:02 Getting requirements to build wheel: finished with status 'done' 00:48:02 Preparing metadata (pyproject.toml): started 00:48:02 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:02 Building wheels for collected packages: omero_marshal 00:48:02 Building wheel for omero_marshal (pyproject.toml): started 00:48:02 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:48:02 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=1405e05ccaa3d1f99b4da899a71ffbcb4f64bd232c429d2848216c5e1c42eee6 00:48:02 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:48:02 Successfully built omero_marshal 00:48:02 Installing collected packages: omero_marshal 00:48:03 Successfully installed omero_marshal-0.9.1.dev0 00:48:03 + for x in *.tar.gz 00:48:03 + pip install -U omero_py-5.19.4.dev0.tar.gz 00:48:03 Processing ./omero_py-5.19.4.dev0.tar.gz 00:48:04 Installing build dependencies: started 00:48:05 Installing build dependencies: finished with status 'done' 00:48:05 Getting requirements to build wheel: started 00:48:06 Getting requirements to build wheel: finished with status 'done' 00:48:06 Preparing metadata (pyproject.toml): started 00:48:06 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.19) 00:48:06 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.4.4) 00:48:06 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.0.0) 00:48:06 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.4) 00:48:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (10.4.0) 00:48:06 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (6.0.1) 00:48:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (3.6.5) 00:48:06 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.32.3) 00:48:06 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.10.1) 00:48:06 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.3.2) 00:48:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.7) 00:48:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (2024.7.4) 00:48:06 Building wheels for collected packages: omero-py 00:48:06 Building wheel for omero-py (pyproject.toml): started 00:48:07 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:48:07 Created wheel for omero-py: filename=omero_py-5.19.4.dev0-py3-none-any.whl size=2782904 sha256=184b03d4faeac9ab863ff2c7fc1230bc5d1a315e5e2dc836f284fe3a52612b3d 00:48:07 Stored in directory: /home/omero/.cache/pip/wheels/f4/9e/a5/caf57b3ab5be95b791b32331e833a135756ff787a5d5189ab9 00:48:07 Successfully built omero-py 00:48:07 Installing collected packages: omero-py 00:48:07 Attempting uninstall: omero-py 00:48:07 Found existing installation: omero-py 5.19.3 00:48:07 Uninstalling omero-py-5.19.3: 00:48:08 Successfully uninstalled omero-py-5.19.3 00:48:10 Successfully installed omero-py-5.19.4.dev0 00:48:10 + for x in *.tar.gz 00:48:10 + pip install -U omero_scripts-5.8.3.dev0.tar.gz 00:48:11 Processing ./omero_scripts-5.8.3.dev0.tar.gz 00:48:11 Installing build dependencies: started 00:48:12 Installing build dependencies: finished with status 'done' 00:48:12 Getting requirements to build wheel: started 00:48:13 Getting requirements to build wheel: finished with status 'done' 00:48:13 Preparing metadata (pyproject.toml): started 00:48:13 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:13 Building wheels for collected packages: omero-scripts 00:48:13 Building wheel for omero-scripts (pyproject.toml): started 00:48:13 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:48:13 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116554 sha256=d151f0ba704512268d8a99939b478421f51ccb99f08ddeb85b1015335d3e2a64 00:48:13 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446 00:48:13 Successfully built omero-scripts 00:48:13 Installing collected packages: omero-scripts 00:48:14 Successfully installed omero-scripts-5.8.3.dev0 00:48:14 + for x in *.tar.gz 00:48:14 + pip install -U omero_web-5.26.1.dev0.tar.gz 00:48:14 Processing ./omero_web-5.26.1.dev0.tar.gz 00:48:14 Installing build dependencies: started 00:48:16 Installing build dependencies: finished with status 'done' 00:48:16 Getting requirements to build wheel: started 00:48:16 Getting requirements to build wheel: finished with status 'done' 00:48:16 Preparing metadata (pyproject.toml): started 00:48:17 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:17 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.4.dev0) 00:48:17 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0) 00:48:17 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:48:17 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0) 00:48:17 Using cached Django-4.2.14-py3-none-any.whl.metadata (4.1 kB) 00:48:17 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0) 00:48:17 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 00:48:17 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0) 00:48:17 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:48:17 Collecting django-csp (from omero-web==5.26.1.dev0) 00:48:17 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:48:18 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0) 00:48:18 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 00:48:18 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0) 00:48:18 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB) 00:48:18 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0) 00:48:18 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.4.0) 00:48:18 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1) 00:48:18 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.10.1) 00:48:18 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1) 00:48:18 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 00:48:18 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 00:48:18 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 00:48:18 Downloading sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 00:48:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.19) 00:48:18 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4) 00:48:18 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0) 00:48:18 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4) 00:48:18 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1) 00:48:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5) 00:48:18 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3) 00:48:18 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 00:48:18 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 00:48:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2) 00:48:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7) 00:48:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.7.4) 00:48:18 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:48:18 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 00:48:18 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:48:18 Using cached Django-4.2.14-py3-none-any.whl (8.0 MB) 00:48:18 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB) 00:48:19 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 00:48:19 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:48:19 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 00:48:19 Downloading sqlparse-0.5.1-py3-none-any.whl (44 kB) 00:48:19 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 44.2/44.2 kB 2.4 MB/s eta 0:00:00 00:48:19 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 00:48:19 Building wheels for collected packages: omero-web 00:48:19 Building wheel for omero-web (pyproject.toml): started 00:48:20 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:48:20 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2765252 sha256=b3a12178a45d7e946f5a72ab05f8ea5d85602b101a72cb8751daf00e9151d74c 00:48:20 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453 00:48:20 Successfully built omero-web 00:48:20 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 00:48:24 Successfully installed Django-4.2.14 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 00:48:24 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:48:24 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:48:24 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:48:24 --2024-07-16 00:48:24-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:48:24 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.109.133, ... 00:48:24 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 00:48:25 HTTP request sent, awaiting response... 200 OK 00:48:25 Length: 95703 (93K) [text/plain] 00:48:25 Saving to: ‘Figure_To_Pdf.py’ 00:48:25 00:48:25 0K .......... .......... .......... .......... .......... 53% 2.16M 0s 00:48:25 50K .......... .......... .......... .......... ... 100% 13.9M=0.03s 00:48:25 00:48:25 2024-07-16 00:48:25 (3.56 MB/s) - ‘Figure_To_Pdf.py’ saved [95703/95703] 00:48:25 00:48:25 + chmod 755 Figure_To_Pdf.py 00:48:25 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:48:25 + omero config set omero.db.name OMERO-server 00:48:26 + omero config set omero.db.host pg 00:48:28 + omero config set omero.db.user postgres 00:48:30 + omero config set omero.data.dir /home/omero/omero-server-data 00:48:31 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:48:33 + omero config set omero.db.poolsize 25 00:48:35 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:48:36 + omero config set omero.security.trustStorePassword changeit 00:48:38 + omero config set omero.mail.config true 00:48:40 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:48:42 + omero config set omero.mail.host smtp.dundee.ac.uk 00:48:43 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:48:45 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:48:47 + omero certificates 00:48:48 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:48:48 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:48:49 + '[' false = true ']' 00:48:49 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:48:49 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:48:49 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:48:49 2024-07-16 00:48:49,338 [ omego.db] DEBUG dbcommand => upgrade 00:48:49 2024-07-16 00:48:49,338 [ omego.db] DEBUG dbhost => localhost 00:48:49 2024-07-16 00:48:49,338 [ omego.db] DEBUG dbname => OMERO-server 00:48:49 2024-07-16 00:48:49,338 [ omego.db] DEBUG dbpass => omero 00:48:49 2024-07-16 00:48:49,338 [ omego.db] DEBUG dbuser => omero 00:48:49 2024-07-16 00:48:49,338 [ omego.db] DEBUG rootpass => omero 00:48:49 2024-07-16 00:48:49,338 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:48:49 2024-07-16 00:48:49,339 [omego.extern] INFO Executing : omero version 00:48:50 OMERO.py version: 00:48:50 OMERO.server version: 00:48:50 5.6.3-481-b86becb6dd-ice36 00:48:50 5.19.4.dev0 00:48:51 2024-07-16 00:48:51,210 [omego.extern] INFO Completed [1.871 s] 00:48:51 2024-07-16 00:48:51,211 [omego.extern] DEBUG Using omero CLI from omero 00:48:51 2024-07-16 00:48:51,211 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:48:51 2024-07-16 00:48:51,211 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:51 2024-07-16 00:48:51,211 [omego.extern] INFO Executing : omero config get --show-password 00:48:52 2024-07-16 00:48:52,971 [omego.extern] INFO Completed [1.759 s] 00:48:52 2024-07-16 00:48:52,971 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:52 2024-07-16 00:48:52,971 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:48:53 2024-07-16 00:48:53,224 [omego.extern] INFO Completed [0.253 s] 00:48:53 2024-07-16 00:48:53,224 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 00:48:53 2024-07-16 00:48:53,224 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 00:48:53 00:48:53 2024-07-16 00:48:53,225 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:53 2024-07-16 00:48:53,225 [omego.extern] INFO Executing : omero config get --show-password 00:48:54 2024-07-16 00:48:54,908 [omego.extern] INFO Completed [1.684 s] 00:48:54 2024-07-16 00:48:54,909 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:54 2024-07-16 00:48:54,909 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:48:55 2024-07-16 00:48:55,042 [omego.extern] INFO Completed [0.133 s] 00:48:55 2024-07-16 00:48:55,042 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.9") at port "5432".\n' 00:48:55 2024-07-16 00:48:55,042 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:48:55 2024-07-16 00:48:55,042 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:55 2024-07-16 00:48:55,042 [omego.extern] INFO Executing : omero config get --show-password 00:48:56 2024-07-16 00:48:56,705 [omego.extern] INFO Completed [1.662 s] 00:48:56 2024-07-16 00:48:56,705 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:56 2024-07-16 00:48:56,705 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:48:56 2024-07-16 00:48:56,790 [omego.extern] INFO Completed [0.084 s] 00:48:56 2024-07-16 00:48:56,790 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:48:56 2024-07-16 00:48:56,790 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:48:56 2024-07-16 00:48:56,792 [ omego.db] INFO Database is already at OMERO5.4__0 00:48:56 + export LANG=en_US.UTF-8 00:48:56 + LANG=en_US.UTF-8 00:48:56 + export LANGUAGE=en_US:en 00:48:56 + LANGUAGE=en_US:en 00:48:56 + export LC_ALL=en_US.UTF-8 00:48:56 + LC_ALL=en_US.UTF-8 00:48:56 + BUILD_ID=DONT_KILL_ME 00:48:56 + omero admin start 00:49:08 No descriptor given. Using etc/grid/default.xml 00:49:19 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:49:19 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:49:19 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:49:19 Waiting on startup. Use CTRL-C to exit 00:49:19 + omero admin waitup 00:49:21 Waiting on startup. Use CTRL-C to exit 00:49:21 + omero admin diagnostics 00:49:23 00:49:23 ================================================================================ 00:49:23 OMERO Diagnostics (admin) 00:49:23 ================================================================================ 00:49:23 00:49:23 Commands: java -version 11.0.22 (/usr/bin/java) 00:49:23 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:49:23 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:49:23 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:49:23 Commands: psql --version 16.2 (/usr/bin/psql) 00:49:23 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:49:23 00:49:23 Component: OMERO.py 5.19.4.dev0 00:49:23 Component: OMERO.server 5.6.3-481-b86becb6dd-ice36 00:49:23 00:49:23 Server: icegridnode running 00:49:23 Server: Blitz-0 active (pid = 89108, enabled) 00:49:23 Server: Indexer-0 activating (enabled) 00:49:23 Server: OMERO.Glacier2 active (pid = 89134, enabled) 00:49:23 Server: OMERO.IceStorm active (pid = 89160, enabled) 00:49:23 Server: Processor-0 active (pid = 89150, enabled) 00:49:23 Server: Tables-0 active (pid = 89156, enabled) 00:49:23 00:49:23 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:49:23 Log files: Blitz-0.log 30.5 KB errors=0 warnings=1 00:49:23 Log files: DropBox.log n/a 00:49:23 Log files: FileServer.log n/a 00:49:23 Log files: Indexer-0.log 598 B 00:49:23 Log files: MonitorServer.log n/a 00:49:23 Log files: Processor-0.log 735 B 00:49:23 Log files: Tables-0.log 961 B 00:49:23 Log files: TestDropBox.log n/a 00:49:23 Log files: master.err 180 B 00:49:23 Log files: master.out 30.1 KB 00:49:23 Log files: Total size 0.06 MB 00:49:23 00:49:23 00:49:23 Environment:OMERO_HOME=(unset) 00:49:23 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:49:23 Environment:OMERO_NODE=(unset) 00:49:23 Environment:OMERO_MASTER=(unset) 00:49:23 Environment:OMERO_USERDIR=(unset) 00:49:23 Environment:OMERO_TMPDIR=(unset) 00:49:23 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:49:23 Environment:PYTHONPATH=(unset) 00:49:23 Environment:ICE_HOME=/opt/ice-3.6.5 00:49:23 Environment:LD_LIBRARY_PATH=(unset) 00:49:23 Environment:DYLD_LIBRARY_PATH=(unset) 00:49:23 00:49:23 OMERO SSL port:4064 00:49:23 OMERO TCP port:4063 00:49:23 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:49:23 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:49:23 00:49:23 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:49:23 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:49:23 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:49:23 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:49:23 00:49:23 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 16 July 2024 46743f5225254651b3de00e141564374defef487 00:49:23 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 16 July 2024 46743f5225254651b3de00e141564374defef487 00:49:23 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 16 July 2024 46743f5225254651b3de00e141564374defef487 00:49:23 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f 00:49:23 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f 00:49:23 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f 00:49:23 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f 00:49:23 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f 00:49:23 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f 00:49:23 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT 00:49:23 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT 00:49:23 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT 00:49:23 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT 00:49:23 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT 00:49:23 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT 00:49:23 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT 00:49:24 + deactivate 00:49:24 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:49:24 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:49:24 + export PATH 00:49:24 + unset _OLD_VIRTUAL_PATH 00:49:24 + '[' -n '' ']' 00:49:24 + '[' -n /bin/bash -o -n '' ']' 00:49:24 + hash -r 00:49:24 + '[' -n '' ']' 00:49:24 + unset VIRTUAL_ENV 00:49:24 + '[' '!' '' = nondestructive ']' 00:49:24 + unset -f deactivate 00:49:24 Finished: SUCCESS