Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4279978962855772581.sh + '[' targa = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_62999_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:40:21,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:40:21,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:40:21,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:40:21,054 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:40:21,055 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:40:21,055 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:40:21,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:40:21,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:40:21,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:40:21,056 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:40:21,056 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:40:21,056 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:40:21,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:40:21,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:40:21,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:40:21,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:40:21,355 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:40:21,355 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:40:21,355 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:40:21,356 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:40:21,356 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:40:21,357 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:40:21,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 302 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 01:40:21,368] [main] java.version = 1.8.0_342 [testng] 01:40:21,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:40:21,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:21,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_01-40-21.log] [testng] 01:40:21,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 01:40:21,421] [main] testng.directory = /data [testng] [2025-05-19 01:40:21,421] [main] testng.configDirectory = /config [testng] [2025-05-19 01:40:21,433] [main] testng.multiplier = 1.0 [testng] [2025-05-19 01:40:21,433] [main] testng.in-memory = false [testng] [2025-05-19 01:40:21,434] [main] testng.allow-missing = false [testng] [2025-05-19 01:40:21,434] [main] user.language = fr [testng] [2025-05-19 01:40:21,434] [main] user.country = FR [testng] [2025-05-19 01:40:21,434] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 01:40:22,448] [main] ---------------------------------------- [testng] [2025-05-19 01:40:22,448] [main] Total files: 21 [testng] [2025-05-19 01:40:22,449] [main] Scan time: 1.014 s (48 ms/file) [testng] [2025-05-19 01:40:22,449] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 01:42:01,095] [pool-1-thread-1] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:42:01,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:42:01,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:01,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_01-42-01.log] [testng] 01:42:01,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7408d224 - End of configuration. [testng] [2025-05-19 01:42:06,424] [pool-1-thread-12] Initializing /data/samples/MARBLES.TGA: [testng] 01:42:06,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:42:06,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:06,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_01-42-06.log] [testng] 01:42:06,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1209fccd - End of configuration. [testng] [2025-05-19 01:42:12,167] [pool-1-thread-11] Initializing /data/samples/CBW8.TGA: [testng] 01:42:12,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:42:12,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:12,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_01-42-12.log] [testng] 01:42:12,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5759c399 - End of configuration. [testng] [2025-05-19 01:42:14,697] [pool-1-thread-10] Initializing /data/samples/UTC24.TGA: [testng] 01:42:14,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:42:14,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:14,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_01-42-14.log] [testng] 01:42:14,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ec4d12 - End of configuration. [testng] [2025-05-19 01:42:17,129] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:42:17,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:42:17,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:17,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_01-42-17.log] [testng] 01:42:17,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44a1b9c1 - End of configuration. [testng] [2025-05-19 01:42:20,132] [pool-1-thread-8] Initializing /data/samples/XING_B16.TGA: [testng] 01:42:20,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:42:20,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:20,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_01-42-20.log] [testng] 01:42:20,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69560fd9 - End of configuration. [testng] [2025-05-19 01:42:21,911] [pool-1-thread-7] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:42:21,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:42:21,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:21,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_01-42-21.log] [testng] 01:42:21,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b515607 - End of configuration. [testng] [2025-05-19 01:42:26,573] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 01:42:26,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:42:26,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:26,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_01-42-26.log] [testng] 01:42:26,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13e3abf1 - End of configuration. [testng] [2025-05-19 01:42:29,790] [pool-1-thread-5] Initializing /data/samples/UTC16.TGA: [testng] 01:42:29,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:42:29,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:29,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_01-42-29.log] [testng] 01:42:29,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@259eb3c5 - End of configuration. [testng] [2025-05-19 01:42:33,671] [pool-1-thread-4] Initializing /data/samples/CTC24.TGA: [testng] 01:42:33,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:42:33,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:33,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_01-42-33.log] [testng] 01:42:33,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e140a0e - End of configuration. [testng] [2025-05-19 01:42:38,081] [pool-1-thread-3] Initializing /data/samples/CCM8.TGA: [testng] 01:42:38,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:42:38,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:38,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_01-42-38.log] [testng] 01:42:38,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b94e9ff - End of configuration. [testng] [2025-05-19 01:42:39,391] [pool-1-thread-2] Initializing /data/samples/XING_B24.TGA: [testng] 01:42:39,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:42:39,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:39,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_01-42-39.log] [testng] 01:42:39,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24a07218 - End of configuration. [testng] [2025-05-19 01:43:10,915] [pool-1-thread-11] Initializing /data/samples/XING_B32.TGA: [testng] [2025-05-19 01:43:13,485] [pool-1-thread-3] Initializing /data/samples/FLAG_B24.TGA: [testng] [2025-05-19 01:43:17,476] [pool-1-thread-7] Initializing /data/samples/XING_T24.TGA: [testng] [2025-05-19 01:43:20,299] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA: [testng] [2025-05-19 01:43:25,529] [pool-1-thread-1] Initializing /data/samples/XING_T32.TGA: [testng] [2025-05-19 01:43:28,079] [pool-1-thread-6] Initializing /data/samples/UTC32.TGA: [testng] [2025-05-19 01:43:30,765] [pool-1-thread-4] Initializing /data/samples/UBW8.TGA: [testng] [2025-05-19 01:43:35,662] [pool-1-thread-5] Initializing /data/samples/UCM8.TGA: [testng] [2025-05-19 01:43:38,403] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 49 seconds Finished: SUCCESS