16:58:19 Started by upstream project "Trigger" build number 395 16:58:19 originally caused by: 16:58:19 Started by timer 16:58:19 Running as SYSTEM 16:58:19 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 16:58:19 The recommended git tool is: NONE 16:58:19 No credentials specified 16:58:19 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 16:58:19 Fetching changes from the remote Git repository 16:58:19 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 16:58:19 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 16:58:19 > git --version # timeout=10 16:58:19 > git --version # 'git version 2.43.5' 16:58:19 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 16:58:20 > git rev-parse origin/merge_ci^{commit} # timeout=10 16:58:20 Checking out Revision f11ef0093a748a916111b76039a372d4a27a8fec (origin/merge_ci) 16:58:20 > git config core.sparsecheckout # timeout=10 16:58:20 > git checkout -f f11ef0093a748a916111b76039a372d4a27a8fec # timeout=10 16:58:20 Commit message: "Add version.properties to etc/omero.properties" 16:58:20 > git rev-list --no-walk cb36b5f3ee4bf0b41eb03284929eb19e8334568e # timeout=10 16:58:20 Cleaning workspace 16:58:20 > git rev-parse --verify HEAD # timeout=10 16:58:20 Resetting working tree 16:58:20 > git reset --hard # timeout=10 16:58:20 > git clean -fdx # timeout=10 16:58:20 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 337 16:58:20 [OMERO-build] $ /bin/bash -xe /tmp/jenkins14548299761825194534.sh 16:58:20 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 16:58:20 + cd src 16:58:20 + export OMERO_BRANCH=merge_ci 16:58:20 + OMERO_BRANCH=merge_ci 16:58:20 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 16:58:20 + source /home/omero/settings.env 16:58:20 ++ OMERO_DB_HOST=pg 16:58:20 ++ OMERO_DB_USER=postgres 16:58:20 ++ OMERO_DB_PASS= 16:58:20 ++ OMERO_ROOT_PASS=omero 16:58:20 ++ OMERO_DATA_DIR=/OMERO 16:58:20 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 16:58:20 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 16:58:23 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 16:58:25 Collecting zeroc-ice==3.6.5 16:58:26 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 16:58:27 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 16:58:27 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 16:58:27 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 16:58:28 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.8.2) 16:58:28 Collecting setuptools 16:58:28 Using cached setuptools-76.0.0-py3-none-any.whl (1.2 MB) 16:58:28 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6) 16:58:29 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 16:58:29 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 16:58:29 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 16:58:29 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 16:58:29 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 16:58:29 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 16:58:29 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 16:58:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 16:58:29 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 16:58:29 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 16:58:29 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 16:58:29 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 16:58:29 Installing collected packages: setuptools 16:58:29 Attempting uninstall: setuptools 16:58:29 Found existing installation: setuptools 75.8.2 16:58:29 Uninstalling setuptools-75.8.2: 16:58:29 Successfully uninstalled setuptools-75.8.2 16:58:30 Successfully installed setuptools-76.0.0 16:58:30 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 16:58:30 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 16:58:30 + source docs/hudson/OMERO.sh 16:58:30 ++ set -e 16:58:30 ++ set -u 16:58:30 ++ set -x 16:58:30 ++ source docs/hudson/functions.sh 16:58:30 ++ echo Building merge_ci 16:58:30 Building merge_ci 16:58:30 ++ python3 ./build.py build-dev release-all 16:58:30 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 16:58:31 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 16:58:31 16:58:31 check-ivy: 16:58:31 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 16:58:31 Created dir: /home/omero/workspace/OMERO-build/src/target 16:58:32 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 16:58:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 16:58:32 16:58:32 build-scons: 16:58:32 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 16:58:33 No sub-builds to iterate on 16:58:33 Entering /home/omero/workspace/OMERO-build/src/components/tools... 16:58:33 16:58:33 buildlist: 16:58:33 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 16:58:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 16:58:33 16:58:33 clean: 16:58:33 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 16:58:33 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 16:58:33 16:58:33 python-clean: 16:58:33 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 16:58:33 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-f11ef0093a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 16:58:33 warnings.warn( 16:58:33 running clean 16:58:34 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 16:58:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 16:58:34 16:58:34 python-clean: 16:58:34 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 16:58:34 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-f11ef0093a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 16:58:34 warnings.warn( 16:58:34 running clean 16:58:34 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 16:58:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 16:58:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 16:58:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 16:58:34 16:58:34 python-clean: 16:58:34 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 16:58:34 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-f11ef0093a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 16:58:34 warnings.warn( 16:58:34 running clean 16:58:34 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 16:58:34 Deleting directory /home/omero/workspace/OMERO-build/src/target 16:58:34 16:58:34 build-scons: 16:58:34 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 16:58:34 16:58:34 build: 16:58:34 No sub-builds to iterate on 16:58:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 16:58:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 16:58:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 16:58:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 16:58:34 16:58:34 tools-init: 16:58:34 no-op 16:58:35 16:58:35 retrieve: 16:58:35 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 16:58:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 16:58:35 WARNING: An illegal reflective access operation has occurred 16:58:35 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 16:58:35 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 16:58:35 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 16:58:35 WARNING: All illegal access operations will be denied in a future release 16:59:09 16:59:09 prepare: 16:59:09 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 16:59:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 16:59:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 16:59:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 16:59:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 16:59:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 16:59:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 16:59:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 16:59:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 16:59:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 16:59:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 16:59:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 16:59:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 16:59:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 16:59:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 16:59:09 16:59:09 pre-compile: 16:59:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 16:59:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 16:59:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 16:59:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 16:59:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 16:59:09 16:59:09 compile: 16:59:09 no-op 16:59:09 16:59:09 package: 16:59:09 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 16:59:10 16:59:10 install: 16:59:10 :: delivering :: omero#omero_client;working@0ac93bfd5614 :: 5.6.3-543-f11ef0093a-ice36 :: integration :: Sun Mar 09 16:58:34 UTC 2025 16:59:10 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 16:59:10 :: publishing :: omero#omero_client 16:59:10 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-f11ef0093a-ice36/omero_client-5.6.3-543-f11ef0093a-ice36.jar 16:59:10 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-f11ef0093a-ice36/omero_client-5.6.3-543-f11ef0093a-ice36.xml 16:59:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 16:59:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 16:59:10 16:59:10 retrieve: 16:59:10 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 16:59:10 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 16:59:11 Entering /home/omero/workspace/OMERO-build/src/components/tools... 16:59:11 16:59:11 dist: 16:59:11 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 16:59:11 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 16:59:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 16:59:11 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 16:59:11 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 16:59:11 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 16:59:11 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 16:59:11 Entering /home/omero/workspace/OMERO-build/src/components/tests... 16:59:11 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 16:59:11 16:59:11 copy-licenses: 16:59:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 16:59:11 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 16:59:11 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 16:59:11 16:59:11 copy-history: 16:59:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 16:59:12 16:59:12 copy-etc: 16:59:12 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 16:59:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 16:59:12 16:59:12 copy-sql: 16:59:12 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 16:59:19 16:59:19 copy-server: 16:59:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 16:59:19 16:59:19 copy-client: 16:59:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 16:59:20 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 16:59:21 16:59:21 update-version: 16:59:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 16:59:21 16:59:21 create-workdirs: 16:59:21 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 16:59:21 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 16:59:21 16:59:21 copy-luts: 16:59:21 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 16:59:21 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 16:59:21 16:59:21 test-compile: 16:59:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 16:59:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 16:59:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 16:59:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 16:59:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 16:59:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 16:59:22 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 16:59:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 16:59:22 16:59:22 testng-init: 16:59:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 16:59:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 16:59:25 16:59:25,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 16:59:25 16:59:25,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - No custom configurators were discovered as a service. 16:59:25 16:59:25,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 16:59:25 16:59:25,637 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 16:59:25 16:59:25,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 16:59:25 16:59:25,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 16:59:25 16:59:25,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 16:59:25 16:59:25,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 16:59:25 16:59:25,641 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 16:59:25 16:59:25,641 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 16:59:25 16:59:25,641 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 16:59:25 16:59:25,642 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@179eb386 - Resource [logback.xml] occurs multiple times on the classpath. 16:59:25 16:59:25,642 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@179eb386 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 16:59:25 16:59:25,642 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@179eb386 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 16:59:25 16:59:25,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 16:59:25 16:59:25,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 16:59:25 16:59:25,857 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 16:59:25 16:59:25,859 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2896e105 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 16:59:25 16:59:25,859 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2896e105 - Please move "immediateFlush" property into the enclosing appender. 16:59:25 16:59:25,920 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2896e105 - Setting the "immediateFlush" property of the enclosing appender to true 16:59:25 16:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 16:59:25 16:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 16:59:25 16:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 16:59:25 16:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 16:59:25 16:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 16:59:25 16:59:25,921 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 16:59:25 16:59:25,922 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7c76d466 - End of configuration. 16:59:25 16:59:25,924 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5748ffe3 - Registering current configuration as safe fallback point 16:59:25 16:59:25,924 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 16:59:25 16:59:25 lifecycle.test-compile: 16:59:25 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 16:59:26 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 16:59:26 warning: [options] bootstrap class path not set in conjunction with -source 8 16:59:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 16:59:28 import omero.grid.RawAccessRequest; 16:59:28 ^ 16:59:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 16:59:28 import omero.grid.RawAccessRequest; 16:59:28 ^ 16:59:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 16:59:28 import omero.grid.RawAccessRequest; 16:59:28 ^ 16:59:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 16:59:28 import omero.model.ImportJob; 16:59:28 ^ 16:59:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 16:59:28 import omero.model.ImportJobI; 16:59:28 ^ 16:59:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 16:59:29 IObject link = (IObject) linkClass.newInstance(); 16:59:29 ^ 16:59:29 where T is a type-variable: 16:59:29 T extends Object declared in class Class 16:59:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 16:59:29 T copy = (T) obj.getClass().newInstance(); 16:59:29 ^ 16:59:29 where T is a type-variable: 16:59:29 T extends Object declared in class Class 16:59:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 16:59:29 RawAccessRequest raw = new RawAccessRequest(); 16:59:29 ^ 16:59:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 16:59:29 RawAccessRequest raw = new RawAccessRequest(); 16:59:29 ^ 16:59:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 16:59:29 raw.repoUuid = legacy.root().getHash().getValue(); 16:59:29 ^ 16:59:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 16:59:29 raw.command = "rm"; 16:59:29 ^ 16:59:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 16:59:29 raw.args = Arrays.asList(path); 16:59:29 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 16:59:30 final IObject link = linkClass.newInstance(); 16:59:30 ^ 16:59:30 where T is a type-variable: 16:59:30 T extends Object declared in class Class 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 16:59:30 originalLink.setChild(annotationClass.newInstance()); 16:59:30 ^ 16:59:30 where T is a type-variable: 16:59:30 T extends Object declared in class Class 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 16:59:30 RoiResult r = svc.findByImage(id, new RoiOptions()); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 16:59:30 final RawAccessRequest request = new RawAccessRequest(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 16:59:30 final RawAccessRequest request = new RawAccessRequest(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 16:59:30 request.repoUuid = repo.root().getHash().getValue(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 16:59:30 request.command = "exists"; 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 16:59:30 request.args = Collections.singletonList(dirPath); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 16:59:30 final RawAccessRequest request = new RawAccessRequest(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 16:59:30 final RawAccessRequest request = new RawAccessRequest(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 16:59:30 request.repoUuid = repo.root().getHash().getValue(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 16:59:30 request.command = "exists"; 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 16:59:30 request.args = Collections.singletonList(dirName); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 16:59:30 final ImportJob importJob = new ImportJobI(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 16:59:30 final ImportJob importJob = new ImportJobI(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 16:59:30 importJob.setImageName(omero.rtypes.rstring(name)); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 16:59:30 importJob.setImageDescription(omero.rtypes.rstring(desc)); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 16:59:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 16:59:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 16:59:30 final String savedName = sent.getImageName().getValue().toString(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 16:59:30 final String savedDesc = sent.getImageDescription().getValue().toString(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 16:59:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 16:59:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 16:59:30 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 16:59:30 ^ 16:59:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 16:59:30 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 16:59:30 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 RoiResult r = svc.findByImage(image.getId().getValue(), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 16:59:31 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 16:59:31 table = svc.getTable(f.getId().getValue()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 RoiResult r = svc.findByImage(image.getId().getValue(), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 16:59:31 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 16:59:31 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 16:59:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 16:59:31 svc.getShapeStatsRestricted( 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 16:59:31 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 16:59:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 16:59:31 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 16:59:31 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 16:59:31 request.typesToIgnore = Collections.singletonList("Annotation"); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 16:59:31 request.typesToIgnore = Collections.singletonList("Annotation"); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 16:59:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 16:59:31 p2.setRelatedTo(p1); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 16:59:31 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 16:59:31 pixels1.setRelatedTo(pixels2); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 16:59:31 Pixels pixels = pixels1.getRelatedTo(); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 16:59:31 Assert.assertNull(pixels1.getRelatedTo()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 16:59:31 pixels1.setRelatedTo(pixels2); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 16:59:31 Pixels pixels = pixels1.getRelatedTo(); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 16:59:31 Assert.assertNull(pixels1.getRelatedTo()); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 16:59:31 ^ 16:59:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 16:59:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 16:59:31 ^ 16:59:31 Note: Some input files use unchecked or unsafe operations. 16:59:31 Note: Recompile with -Xlint:unchecked for details. 16:59:31 88 warnings 16:59:31 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_319631896.tmp 16:59:31 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 16:59:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 16:59:32 :: delivering :: omero#OmeroJava-test;working@0ac93bfd5614 :: 5.6.3-543-f11ef0093a-ice36 :: integration :: Sun Mar 09 16:59:22 UTC 2025 16:59:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 16:59:32 :: publishing :: omero#OmeroJava-test 16:59:32 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-f11ef0093a-ice36.jar 16:59:32 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-f11ef0093a-ice36.xml 16:59:32 16:59:32 build-eclipse: 16:59:32 No sub-builds to iterate on 16:59:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 16:59:32 16:59:32 retrieve: 16:59:32 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 16:59:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 16:59:36 16:59:36 prepare: 16:59:36 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 16:59:37 16:59:37 release-clients: 16:59:37 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-543-f11ef0093a-ice36.zip 16:59:43 16:59:43 release-zip: 16:59:43 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-543-f11ef0093a-ice36.zip 16:59:56 16:59:56 BUILD SUCCESSFUL 16:59:56 Total time: 1 minute 25 seconds 16:59:56 ++ '[' -d .git ']' 16:59:56 ++ python3 ./build.py release-src 16:59:56 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 16:59:56 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 16:59:57 16:59:57 release-src-git: 16:59:57 Releasing openmicroscopy-5.6.3-543-f11ef0093a-ice36 16:59:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-f11ef0093a-ice36.zip 16:59:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-f11ef0093a-ice36-base.zip 17:00:00 17:00:00 BUILD SUCCESSFUL 17:00:00 Total time: 3 seconds 17:00:00 ++ echo BUILD_NUMBER=341 17:00:00 ++ echo OMERO_BRANCH=merge_ci 17:00:00 ++ git_info 17:00:00 +++ git rev-parse HEAD 17:00:00 ++ HEAD=f11ef0093a748a916111b76039a372d4a27a8fec 17:00:00 ++ git log --max-count=1 f11ef0093a748a916111b76039a372d4a27a8fec 17:00:00 ++ env 17:00:00 ++ sort 17:00:00 Archiving artifacts 17:00:28 Finished: SUCCESS