11:37:22 Started by upstream project "Trigger" build number 434 11:37:22 originally caused by: 11:37:22 Started by user devspace 11:37:22 Restarted from build #433, stage OMERO Python 11:37:22 Running as SYSTEM 11:37:22 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 11:37:22 The recommended git tool is: NONE 11:37:22 No credentials specified 11:37:22 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 11:37:22 Fetching changes from the remote Git repository 11:37:22 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 11:37:22 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 11:37:22 > git --version # timeout=10 11:37:22 > git --version # 'git version 2.43.5' 11:37:22 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 11:37:23 > git rev-parse origin/merge_ci^{commit} # timeout=10 11:37:23 Checking out Revision fdc7be2b32464958ffe826facf36129f9304c5f5 (origin/merge_ci) 11:37:23 > git config core.sparsecheckout # timeout=10 11:37:23 > git checkout -f fdc7be2b32464958ffe826facf36129f9304c5f5 # timeout=10 11:37:23 Commit message: "Add version.properties to etc/omero.properties" 11:37:23 > git rev-list --no-walk 765bb833e1246bc9f998c327782c814ce98bafc1 # timeout=10 11:37:23 Cleaning workspace 11:37:23 > git rev-parse --verify HEAD # timeout=10 11:37:23 Resetting working tree 11:37:23 > git reset --hard # timeout=10 11:37:23 > git clean -fdx # timeout=10 11:37:23 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 368 11:37:23 [OMERO-build] $ /bin/bash -xe /tmp/jenkins146563527842731187.sh 11:37:23 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 11:37:23 + cd src 11:37:23 + export OMERO_BRANCH=merge_ci 11:37:23 + OMERO_BRANCH=merge_ci 11:37:23 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 11:37:23 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 11:37:23 + source /home/omero/settings.env 11:37:23 ++ OMERO_DB_HOST=pg 11:37:23 ++ OMERO_DB_USER=postgres 11:37:23 ++ OMERO_DB_PASS= 11:37:23 ++ OMERO_ROOT_PASS=omero 11:37:23 ++ OMERO_DATA_DIR=/OMERO 11:37:23 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:37:23 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 11:37:27 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 11:37:27 Collecting zeroc-ice==3.6.5 11:37:28 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 11:37:33 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 3.1 MB/s eta 0:00:00 11:37:33 Installing collected packages: zeroc-ice 11:37:34 Successfully installed zeroc-ice-3.6.5 11:37:34 11:37:34 [notice] A new release of pip available: 22.3.1 -> 25.0.1 11:37:34 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:37:34 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 11:37:34 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 11:37:35 Collecting setuptools<66 11:37:35 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 11:37:35 Collecting omero-py 11:37:35 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB) 11:37:35 Collecting urllib3<2 11:37:35 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 11:37:35 Collecting appdirs 11:37:35 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 11:37:35 Collecting future 11:37:35 Using cached future-1.0.0-py3-none-any.whl (491 kB) 11:37:35 Collecting numpy<2 11:37:35 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB) 11:37:36 Collecting Pillow>=10.0.0 11:37:36 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB) 11:37:36 Collecting PyYAML 11:37:36 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 11:37:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 11:37:36 Collecting requests 11:37:36 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 11:37:36 Collecting portalocker 11:37:36 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 11:37:36 Collecting charset-normalizer<4,>=2 11:37:36 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) 11:37:36 Collecting idna<4,>=2.5 11:37:36 Using cached idna-3.10-py3-none-any.whl (70 kB) 11:37:36 Collecting certifi>=2017.4.17 11:37:36 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) 11:37:37 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 11:37:37 Attempting uninstall: setuptools 11:37:37 Found existing installation: setuptools 65.5.1 11:37:37 Uninstalling setuptools-65.5.1: 11:37:37 Successfully uninstalled setuptools-65.5.1 11:37:42 Successfully installed Pillow-11.1.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 11:37:42 11:37:42 [notice] A new release of pip available: 22.3.1 -> 25.0.1 11:37:42 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:37:42 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 11:37:42 ++ deactivate nondestructive 11:37:42 ++ '[' -n '' ']' 11:37:42 ++ '[' -n '' ']' 11:37:42 ++ hash -r 11:37:42 ++ '[' -n '' ']' 11:37:42 ++ unset VIRTUAL_ENV 11:37:42 ++ unset VIRTUAL_ENV_PROMPT 11:37:42 ++ '[' '!' nondestructive = nondestructive ']' 11:37:42 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 11:37:42 ++ export VIRTUAL_ENV 11:37:42 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:37:42 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:37:42 ++ export PATH 11:37:42 ++ '[' -n '' ']' 11:37:42 ++ '[' -z '' ']' 11:37:42 ++ _OLD_VIRTUAL_PS1= 11:37:42 ++ PS1='(omero-virtualenv) ' 11:37:42 ++ export PS1 11:37:42 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 11:37:42 ++ export VIRTUAL_ENV_PROMPT 11:37:42 ++ hash -r 11:37:42 + source docs/hudson/OMERO.sh 11:37:42 ++ set -e 11:37:42 ++ set -u 11:37:42 ++ set -x 11:37:42 ++ source docs/hudson/functions.sh 11:37:42 ++ echo Building merge_ci 11:37:42 Building merge_ci 11:37:42 ++ python3 ./build.py build-dev release-all 11:37:42 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:37:43 11:37:43 check-ivy: 11:37:43 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 11:37:43 Created dir: /home/omero/workspace/OMERO-build/src/target 11:37:43 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:37:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:37:44 11:37:44 build-scons: 11:37:44 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:37:44 No sub-builds to iterate on 11:37:44 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:37:44 11:37:44 buildlist: 11:37:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:37:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:37:44 11:37:44 clean: 11:37:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:37:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:37:45 11:37:45 python-clean: 11:37:45 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:37:45 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-554-fdc7be2b32-ice36-b376') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:37:45 warnings.warn( 11:37:45 running clean 11:37:45 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 11:37:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:37:45 11:37:45 python-clean: 11:37:45 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:37:45 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-554-fdc7be2b32-ice36-b376') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:37:45 warnings.warn( 11:37:45 running clean 11:37:45 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 11:37:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:37:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:37:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:37:45 11:37:45 python-clean: 11:37:45 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:37:45 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-554-fdc7be2b32-ice36-b376') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:37:45 warnings.warn( 11:37:45 running clean 11:37:45 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 11:37:45 Deleting directory /home/omero/workspace/OMERO-build/src/target 11:37:45 11:37:45 build-scons: 11:37:45 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:37:46 11:37:46 build: 11:37:46 No sub-builds to iterate on 11:37:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:37:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:37:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:37:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:37:46 11:37:46 tools-init: 11:37:46 no-op 11:37:46 11:37:46 retrieve: 11:37:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:37:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:37:46 WARNING: An illegal reflective access operation has occurred 11:37:46 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 11:37:46 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 11:37:46 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 11:37:46 WARNING: All illegal access operations will be denied in a future release 11:38:16 11:38:16 prepare: 11:38:16 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:38:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 11:38:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 11:38:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:38:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:38:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:38:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 11:38:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:38:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:38:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:38:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:38:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:38:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:38:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:38:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:38:16 11:38:16 pre-compile: 11:38:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:38:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:38:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:38:17 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:38:17 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:38:17 11:38:17 compile: 11:38:17 no-op 11:38:17 11:38:17 package: 11:38:17 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 11:38:17 11:38:17 install: 11:38:17 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-554-fdc7be2b32-ice36-b376 :: integration :: Tue Apr 08 11:37:46 UTC 2025 11:38:17 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 11:38:17 :: publishing :: omero#omero_client 11:38:17 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-554-fdc7be2b32-ice36-b376/omero_client-5.6.3-554-fdc7be2b32-ice36-b376.jar 11:38:17 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-554-fdc7be2b32-ice36-b376/omero_client-5.6.3-554-fdc7be2b32-ice36-b376.xml 11:38:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:38:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:38:18 11:38:18 retrieve: 11:38:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:38:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:38:18 11:38:18 dist: 11:38:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 11:38:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 11:38:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:38:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:38:18 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 11:38:18 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 11:38:18 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 11:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tests... 11:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:38:18 11:38:18 copy-licenses: 11:38:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:38:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 11:38:18 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 11:38:18 11:38:18 copy-history: 11:38:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:38:18 11:38:18 copy-etc: 11:38:18 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 11:38:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 11:38:18 11:38:18 copy-sql: 11:38:18 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 11:38:23 11:38:23 copy-server: 11:38:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 11:38:23 11:38:23 copy-client: 11:38:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 11:38:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 11:38:24 11:38:24 update-version: 11:38:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 11:38:24 11:38:24 create-workdirs: 11:38:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 11:38:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 11:38:24 11:38:24 copy-luts: 11:38:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:38:24 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:38:24 11:38:24 test-compile: 11:38:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:38:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:38:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:38:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:38:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:38:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:38:25 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:38:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:38:25 11:38:25 testng-init: 11:38:25 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:38:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:38:28 11:38:27,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 11:38:28 11:38:27,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - No custom configurators were discovered as a service. 11:38:28 11:38:27,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 11:38:28 11:38:27,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 11:38:28 11:38:27,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 11:38:28 11:38:27,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 11:38:28 11:38:27,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 11:38:28 11:38:27,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 11:38:28 11:38:27,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 11:38:28 11:38:27,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 11:38:28 11:38:27,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:38:28 11:38:27,964 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs multiple times on the classpath. 11:38:28 11:38:27,964 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:38:28 11:38:27,964 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 11:38:28 11:38:28,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 11:38:28 11:38:28,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 11:38:28 11:38:28,178 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 11:38:28 11:38:28,180 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 11:38:28 11:38:28,180 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Please move "immediateFlush" property into the enclosing appender. 11:38:28 11:38:28,240 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Setting the "immediateFlush" property of the enclosing appender to true 11:38:28 11:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 11:38:28 11:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 11:38:28 11:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 11:38:28 11:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 11:38:28 11:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 11:38:28 11:38:28,241 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 11:38:28 11:38:28,242 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7d7a0e06 - End of configuration. 11:38:28 11:38:28,245 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2c3f9229 - Registering current configuration as safe fallback point 11:38:28 11:38:28,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 11:38:28 11:38:28 lifecycle.test-compile: 11:38:28 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:38:28 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:38:28 warning: [options] bootstrap class path not set in conjunction with -source 8 11:38:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:38:29 import omero.grid.RawAccessRequest; 11:38:29 ^ 11:38:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:38:29 import omero.grid.RawAccessRequest; 11:38:29 ^ 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:38:30 import omero.grid.RawAccessRequest; 11:38:30 ^ 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 11:38:30 import omero.model.ImportJob; 11:38:30 ^ 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:38:30 import omero.model.ImportJobI; 11:38:30 ^ 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 11:38:30 IObject link = (IObject) linkClass.newInstance(); 11:38:30 ^ 11:38:30 where T is a type-variable: 11:38:30 T extends Object declared in class Class 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 11:38:30 T copy = (T) obj.getClass().newInstance(); 11:38:30 ^ 11:38:30 where T is a type-variable: 11:38:30 T extends Object declared in class Class 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:38:30 RawAccessRequest raw = new RawAccessRequest(); 11:38:30 ^ 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:38:30 RawAccessRequest raw = new RawAccessRequest(); 11:38:30 ^ 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:38:30 raw.repoUuid = legacy.root().getHash().getValue(); 11:38:30 ^ 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 11:38:30 raw.command = "rm"; 11:38:30 ^ 11:38:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 11:38:30 raw.args = Arrays.asList(path); 11:38:30 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 11:38:31 final IObject link = linkClass.newInstance(); 11:38:31 ^ 11:38:31 where T is a type-variable: 11:38:31 T extends Object declared in class Class 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 11:38:31 originalLink.setChild(annotationClass.newInstance()); 11:38:31 ^ 11:38:31 where T is a type-variable: 11:38:31 T extends Object declared in class Class 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:38:31 RoiResult r = svc.findByImage(id, new RoiOptions()); 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:38:31 final RawAccessRequest request = new RawAccessRequest(); 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:38:31 final RawAccessRequest request = new RawAccessRequest(); 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:38:31 request.repoUuid = repo.root().getHash().getValue(); 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 11:38:31 request.command = "exists"; 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 11:38:31 request.args = Collections.singletonList(dirPath); 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:38:31 final RawAccessRequest request = new RawAccessRequest(); 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:38:31 final RawAccessRequest request = new RawAccessRequest(); 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:38:31 request.repoUuid = repo.root().getHash().getValue(); 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 11:38:31 request.command = "exists"; 11:38:31 ^ 11:38:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 11:38:31 request.args = Collections.singletonList(dirName); 11:38:31 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 11:38:32 final ImportJob importJob = new ImportJobI(); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:38:32 final ImportJob importJob = new ImportJobI(); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 11:38:32 importJob.setImageName(omero.rtypes.rstring(name)); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 11:38:32 importJob.setImageDescription(omero.rtypes.rstring(desc)); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:38:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:38:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:38:32 final String savedName = sent.getImageName().getValue().toString(); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:38:32 final String savedDesc = sent.getImageDescription().getValue().toString(); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:38:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:38:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:38:32 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:38:32 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 RoiResult r = svc.findByImage(image.getId().getValue(), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 11:38:32 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 11:38:32 table = svc.getTable(f.getId().getValue()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 RoiResult r = svc.findByImage(image.getId().getValue(), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:38:32 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:38:32 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 11:38:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:38:32 svc.getShapeStatsRestricted( 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:38:32 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:38:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:38:32 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:38:32 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:38:32 request.typesToIgnore = Collections.singletonList("Annotation"); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:38:32 request.typesToIgnore = Collections.singletonList("Annotation"); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:38:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:38:32 p2.setRelatedTo(p1); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:38:32 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:38:32 pixels1.setRelatedTo(pixels2); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:38:32 Pixels pixels = pixels1.getRelatedTo(); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:38:32 Assert.assertNull(pixels1.getRelatedTo()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:38:32 pixels1.setRelatedTo(pixels2); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:38:32 Pixels pixels = pixels1.getRelatedTo(); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:38:32 Assert.assertNull(pixels1.getRelatedTo()); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:38:32 ^ 11:38:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:38:32 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:38:32 ^ 11:38:33 Note: Some input files use unchecked or unsafe operations. 11:38:33 Note: Recompile with -Xlint:unchecked for details. 11:38:33 88 warnings 11:38:33 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_811534405.tmp 11:38:33 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 11:38:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:38:33 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-554-fdc7be2b32-ice36-b376 :: integration :: Tue Apr 08 11:38:25 UTC 2025 11:38:33 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 11:38:33 :: publishing :: omero#OmeroJava-test 11:38:33 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-554-fdc7be2b32-ice36-b376.jar 11:38:33 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-554-fdc7be2b32-ice36-b376.xml 11:38:33 11:38:33 build-eclipse: 11:38:33 No sub-builds to iterate on 11:38:33 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:38:33 11:38:33 retrieve: 11:38:33 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:38:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:38:35 11:38:35 prepare: 11:38:35 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:38:36 11:38:36 release-clients: 11:38:36 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-554-fdc7be2b32-ice36-b376.zip 11:38:43 11:38:43 release-zip: 11:38:43 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-554-fdc7be2b32-ice36-b376.zip 11:38:57 11:38:57 BUILD SUCCESSFUL 11:38:57 Total time: 1 minute 14 seconds 11:38:57 ++ '[' -d .git ']' 11:38:57 ++ python3 ./build.py release-src 11:38:57 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:38:57 11:38:57 release-src-git: 11:38:57 Releasing openmicroscopy-5.6.3-554-fdc7be2b32-ice36-b376 11:38:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-554-fdc7be2b32-ice36-b376.zip 11:38:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-554-fdc7be2b32-ice36-b376-base.zip 11:39:00 11:39:00 BUILD SUCCESSFUL 11:39:00 Total time: 3 seconds 11:39:00 ++ echo BUILD_NUMBER=376 11:39:00 ++ echo OMERO_BRANCH=merge_ci 11:39:00 ++ git_info 11:39:00 +++ git rev-parse HEAD 11:39:00 ++ HEAD=fdc7be2b32464958ffe826facf36129f9304c5f5 11:39:00 ++ git log --max-count=1 fdc7be2b32464958ffe826facf36129f9304c5f5 11:39:00 ++ env 11:39:00 ++ sort 11:39:00 Archiving artifacts 11:39:29 Finished: SUCCESS