00:55:47 Started by upstream project "Trigger" build number 517 00:55:47 originally caused by: 00:55:47 Started by timer 00:55:47 Running as SYSTEM 00:55:47 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:55:47 The recommended git tool is: NONE 00:55:47 No credentials specified 00:55:47 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:55:47 Fetching changes from the remote Git repository 00:55:47 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:55:47 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:55:47 > git --version # timeout=10 00:55:47 > git --version # 'git version 2.43.5' 00:55:47 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:55:48 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:55:48 Checking out Revision 41e7d4e5b541ffc098412bd69223c8cb9715e45f (origin/merge_ci) 00:55:48 > git config core.sparsecheckout # timeout=10 00:55:48 > git checkout -f 41e7d4e5b541ffc098412bd69223c8cb9715e45f # timeout=10 00:55:48 Commit message: "Add version.properties to etc/omero.properties" 00:55:48 > git rev-list --no-walk 1b63fb50f904c32995ba6fbc738f1827730dad14 # timeout=10 00:55:48 Cleaning workspace 00:55:48 > git rev-parse --verify HEAD # timeout=10 00:55:48 Resetting working tree 00:55:48 > git reset --hard # timeout=10 00:55:48 > git clean -fdx # timeout=10 00:55:49 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 434 00:55:49 [OMERO-build] $ /bin/bash -xe /tmp/jenkins5966798038377843536.sh 00:55:49 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 00:55:49 + cd src 00:55:49 + export OMERO_BRANCH=merge_ci 00:55:49 + OMERO_BRANCH=merge_ci 00:55:49 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:55:49 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:55:49 + source /home/omero/settings.env 00:55:49 ++ OMERO_DB_HOST=pg 00:55:49 ++ OMERO_DB_USER=postgres 00:55:49 ++ OMERO_DB_PASS= 00:55:49 ++ OMERO_ROOT_PASS=omero 00:55:49 ++ OMERO_DATA_DIR=/OMERO 00:55:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:55:49 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:55:55 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:55:55 Collecting zeroc-ice==3.6.5 00:55:56 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:55:58 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 7.5 MB/s eta 0:00:00 00:55:59 Installing collected packages: zeroc-ice 00:56:00 Successfully installed zeroc-ice-3.6.5 00:56:00 00:56:00 [notice] A new release of pip available: 22.3.1 -> 25.1.1 00:56:00 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:56:00 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:56:01 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:56:01 Collecting setuptools<66 00:56:01 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:56:01 Collecting omero-py 00:56:01 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) 00:56:01 Collecting urllib3<2 00:56:01 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:56:01 Collecting appdirs 00:56:01 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:56:01 Collecting future 00:56:01 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:56:02 Collecting numpy<3 00:56:02 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB) 00:56:03 Collecting Pillow>=10.0.0 00:56:03 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 00:56:03 Collecting PyYAML 00:56:03 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 00:56:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:56:03 Collecting requests 00:56:03 Using cached requests-2.32.4-py3-none-any.whl (64 kB) 00:56:03 Collecting portalocker 00:56:03 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 00:56:04 Collecting charset_normalizer<4,>=2 00:56:04 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 00:56:04 Collecting idna<4,>=2.5 00:56:04 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:56:04 Collecting certifi>=2017.4.17 00:56:04 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB) 00:56:04 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 00:56:04 Attempting uninstall: setuptools 00:56:04 Found existing installation: setuptools 65.5.1 00:56:04 Uninstalling setuptools-65.5.1: 00:56:05 Successfully uninstalled setuptools-65.5.1 00:56:13 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.0 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20 00:56:13 00:56:13 [notice] A new release of pip available: 22.3.1 -> 25.1.1 00:56:13 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:56:13 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:56:13 ++ deactivate nondestructive 00:56:13 ++ '[' -n '' ']' 00:56:13 ++ '[' -n '' ']' 00:56:13 ++ hash -r 00:56:13 ++ '[' -n '' ']' 00:56:13 ++ unset VIRTUAL_ENV 00:56:13 ++ unset VIRTUAL_ENV_PROMPT 00:56:13 ++ '[' '!' nondestructive = nondestructive ']' 00:56:13 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:56:13 ++ export VIRTUAL_ENV 00:56:13 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:56:13 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:56:13 ++ export PATH 00:56:13 ++ '[' -n '' ']' 00:56:13 ++ '[' -z '' ']' 00:56:13 ++ _OLD_VIRTUAL_PS1= 00:56:13 ++ PS1='(omero-virtualenv) ' 00:56:13 ++ export PS1 00:56:13 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:56:13 ++ export VIRTUAL_ENV_PROMPT 00:56:13 ++ hash -r 00:56:13 + source docs/hudson/OMERO.sh 00:56:13 ++ set -e 00:56:13 ++ set -u 00:56:13 ++ set -x 00:56:13 ++ source docs/hudson/functions.sh 00:56:13 ++ echo Building merge_ci 00:56:13 Building merge_ci 00:56:13 ++ python3 ./build.py build-dev release-all 00:56:13 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:56:15 00:56:15 check-ivy: 00:56:15 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:56:15 Created dir: /home/omero/workspace/OMERO-build/src/target 00:56:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:56:15 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:56:17 00:56:17 build-scons: 00:56:17 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:56:17 No sub-builds to iterate on 00:56:17 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:56:17 00:56:17 buildlist: 00:56:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:56:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:56:18 00:56:18 clean: 00:56:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:56:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:56:18 00:56:18 python-clean: 00:56:18 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:56:18 running clean 00:56:18 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-41e7d4e5b5-ice36-b441') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:56:18 warnings.warn( 00:56:18 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:56:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:56:19 00:56:19 python-clean: 00:56:19 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:56:19 running clean 00:56:19 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-41e7d4e5b5-ice36-b441') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:56:19 warnings.warn( 00:56:19 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:56:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:56:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:56:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:56:20 00:56:20 python-clean: 00:56:20 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:56:20 running clean 00:56:20 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-41e7d4e5b5-ice36-b441') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:56:20 warnings.warn( 00:56:20 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:56:20 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:56:20 00:56:20 build-scons: 00:56:20 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:56:20 00:56:20 build: 00:56:20 No sub-builds to iterate on 00:56:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:56:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:56:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:56:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:56:21 00:56:21 tools-init: 00:56:21 no-op 00:56:21 00:56:21 retrieve: 00:56:21 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:56:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:56:22 WARNING: An illegal reflective access operation has occurred 00:56:22 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:56:22 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:56:22 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:56:22 WARNING: All illegal access operations will be denied in a future release 00:56:38 00:56:38 prepare: 00:56:38 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:56:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:56:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:56:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:56:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:56:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:56:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:56:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:56:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:56:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:56:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:56:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:56:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:56:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:56:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:56:38 00:56:38 pre-compile: 00:56:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:56:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:56:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:56:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:56:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:56:39 00:56:39 compile: 00:56:39 no-op 00:56:39 00:56:39 package: 00:56:39 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:56:40 00:56:40 install: 00:56:40 :: delivering :: omero#omero_client;working@0746fffe56ce :: 5.6.3-567-41e7d4e5b5-ice36-b441 :: integration :: Fri Jun 13 00:56:21 UTC 2025 00:56:40 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:56:40 :: publishing :: omero#omero_client 00:56:40 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-567-41e7d4e5b5-ice36-b441/omero_client-5.6.3-567-41e7d4e5b5-ice36-b441.jar 00:56:40 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-567-41e7d4e5b5-ice36-b441/omero_client-5.6.3-567-41e7d4e5b5-ice36-b441.xml 00:56:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:56:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:56:41 00:56:41 retrieve: 00:56:41 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:56:41 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:56:41 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:56:41 00:56:41 dist: 00:56:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:56:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:56:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:56:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:56:41 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:56:41 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:56:41 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:56:42 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:56:42 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:56:42 00:56:42 copy-licenses: 00:56:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:56:42 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:56:42 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:56:42 00:56:42 copy-history: 00:56:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:56:42 00:56:42 copy-etc: 00:56:42 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:56:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:56:42 00:56:42 copy-sql: 00:56:42 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:56:48 00:56:48 copy-server: 00:56:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 00:56:48 00:56:48 copy-client: 00:56:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:56:50 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 00:56:50 00:56:50 update-version: 00:56:50 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:56:50 00:56:50 create-workdirs: 00:56:50 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:56:50 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:56:50 00:56:50 copy-luts: 00:56:50 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:56:50 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:56:50 00:56:50 test-compile: 00:56:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:56:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:56:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:56:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:56:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:56:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:56:51 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:56:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:56:52 00:56:52 testng-init: 00:56:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:56:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:56:57 00:56:57,216 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 00:56:57 00:56:57,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - No custom configurators were discovered as a service. 00:56:57 00:56:57,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:56:57 00:56:57,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:56:57 00:56:57,228 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:56:57 00:56:57,228 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:56:57 00:56:57,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:56:57 00:56:57,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:56:57 00:56:57,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:56:57 00:56:57,233 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:56:57 00:56:57,233 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:56:57 00:56:57,234 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs multiple times on the classpath. 00:56:57 00:56:57,234 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:56:57 00:56:57,234 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:56:57 00:56:57,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:56:57 00:56:57,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:56:57 00:56:57,620 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:56:57 00:56:57,623 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:56:57 00:56:57,623 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Please move "immediateFlush" property into the enclosing appender. 00:56:57 00:56:57,722 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Setting the "immediateFlush" property of the enclosing appender to true 00:56:57 00:56:57,723 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:56:57 00:56:57,723 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:56:57 00:56:57,723 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:56:57 00:56:57,723 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:56:57 00:56:57,723 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:56:57 00:56:57,723 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:56:57 00:56:57,725 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@513156fd - End of configuration. 00:56:57 00:56:57,728 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4fd43b14 - Registering current configuration as safe fallback point 00:56:57 00:56:57,728 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 496 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:56:57 00:56:57 lifecycle.test-compile: 00:56:57 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:56:57 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:56:58 warning: [options] bootstrap class path not set in conjunction with -source 8 00:57:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:57:01 import omero.grid.RawAccessRequest; 00:57:01 ^ 00:57:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:57:01 import omero.grid.RawAccessRequest; 00:57:01 ^ 00:57:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:57:01 import omero.grid.RawAccessRequest; 00:57:01 ^ 00:57:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:57:01 import omero.model.ImportJob; 00:57:01 ^ 00:57:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:57:01 import omero.model.ImportJobI; 00:57:01 ^ 00:57:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:57:03 IObject link = (IObject) linkClass.newInstance(); 00:57:03 ^ 00:57:03 where T is a type-variable: 00:57:03 T extends Object declared in class Class 00:57:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:57:04 T copy = (T) obj.getClass().newInstance(); 00:57:04 ^ 00:57:04 where T is a type-variable: 00:57:04 T extends Object declared in class Class 00:57:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:57:04 RawAccessRequest raw = new RawAccessRequest(); 00:57:04 ^ 00:57:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:57:04 RawAccessRequest raw = new RawAccessRequest(); 00:57:04 ^ 00:57:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:57:04 raw.repoUuid = legacy.root().getHash().getValue(); 00:57:04 ^ 00:57:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:57:04 raw.command = "rm"; 00:57:04 ^ 00:57:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:57:04 raw.args = Arrays.asList(path); 00:57:04 ^ 00:57:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:57:04 final IObject link = linkClass.newInstance(); 00:57:04 ^ 00:57:04 where T is a type-variable: 00:57:04 T extends Object declared in class Class 00:57:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:57:05 originalLink.setChild(annotationClass.newInstance()); 00:57:05 ^ 00:57:05 where T is a type-variable: 00:57:05 T extends Object declared in class Class 00:57:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:57:05 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:57:05 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:57:06 final RawAccessRequest request = new RawAccessRequest(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:57:06 final RawAccessRequest request = new RawAccessRequest(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:57:06 request.repoUuid = repo.root().getHash().getValue(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:57:06 request.command = "exists"; 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:57:06 request.args = Collections.singletonList(dirPath); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:57:06 final RawAccessRequest request = new RawAccessRequest(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:57:06 final RawAccessRequest request = new RawAccessRequest(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:57:06 request.repoUuid = repo.root().getHash().getValue(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:57:06 request.command = "exists"; 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:57:06 request.args = Collections.singletonList(dirName); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:57:06 final ImportJob importJob = new ImportJobI(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:57:06 final ImportJob importJob = new ImportJobI(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:57:06 importJob.setImageName(omero.rtypes.rstring(name)); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:57:06 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:57:06 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:57:06 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:57:06 final String savedName = sent.getImageName().getValue().toString(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:57:06 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:57:06 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:57:06 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:57:06 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:57:06 ^ 00:57:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:57:06 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:57:06 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 RoiResult r = svc.findByImage(image.getId().getValue(), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:57:07 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:57:07 table = svc.getTable(f.getId().getValue()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 RoiResult r = svc.findByImage(image.getId().getValue(), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:57:07 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:57:07 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:57:07 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:57:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:57:07 svc.getShapeStatsRestricted( 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:57:07 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:57:07 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:57:07 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:57:07 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:57:07 request.typesToIgnore = Collections.singletonList("Annotation"); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:57:07 request.typesToIgnore = Collections.singletonList("Annotation"); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:57:07 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:57:07 p2.setRelatedTo(p1); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:57:07 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:57:07 pixels1.setRelatedTo(pixels2); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:57:07 Pixels pixels = pixels1.getRelatedTo(); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:57:07 Assert.assertNull(pixels1.getRelatedTo()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:57:07 pixels1.setRelatedTo(pixels2); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:57:07 Pixels pixels = pixels1.getRelatedTo(); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:57:07 Assert.assertNull(pixels1.getRelatedTo()); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:57:07 ^ 00:57:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:57:07 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:57:07 ^ 00:57:08 Note: Some input files use unchecked or unsafe operations. 00:57:08 Note: Recompile with -Xlint:unchecked for details. 00:57:08 88 warnings 00:57:08 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1683868403.tmp 00:57:08 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:57:08 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:57:08 :: delivering :: omero#OmeroJava-test;working@0746fffe56ce :: 5.6.3-567-41e7d4e5b5-ice36-b441 :: integration :: Fri Jun 13 00:56:51 UTC 2025 00:57:08 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:57:08 :: publishing :: omero#OmeroJava-test 00:57:08 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-567-41e7d4e5b5-ice36-b441.jar 00:57:08 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-567-41e7d4e5b5-ice36-b441.xml 00:57:08 00:57:08 build-eclipse: 00:57:08 No sub-builds to iterate on 00:57:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:57:09 00:57:09 retrieve: 00:57:09 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:57:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:57:13 00:57:13 prepare: 00:57:13 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:57:15 00:57:15 release-clients: 00:57:15 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-567-41e7d4e5b5-ice36-b441.zip 00:57:24 00:57:24 release-zip: 00:57:24 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-567-41e7d4e5b5-ice36-b441.zip 00:57:41 00:57:41 BUILD SUCCESSFUL 00:57:41 Total time: 1 minute 27 seconds 00:57:41 ++ '[' -d .git ']' 00:57:41 ++ python3 ./build.py release-src 00:57:41 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:57:42 00:57:42 release-src-git: 00:57:42 Releasing openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441 00:57:44 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441.zip 00:57:44 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441-base.zip 00:57:47 00:57:47 BUILD SUCCESSFUL 00:57:47 Total time: 5 seconds 00:57:47 ++ echo BUILD_NUMBER=441 00:57:47 ++ echo OMERO_BRANCH=merge_ci 00:57:47 ++ git_info 00:57:47 +++ git rev-parse HEAD 00:57:47 ++ HEAD=41e7d4e5b541ffc098412bd69223c8cb9715e45f 00:57:47 ++ git log --max-count=1 41e7d4e5b541ffc098412bd69223c8cb9715e45f 00:57:47 ++ env 00:57:47 ++ sort 00:57:47 Archiving artifacts 00:58:25 Finished: SUCCESS