08:54:24 Started by upstream project "Trigger" build number 631 08:54:24 originally caused by: 08:54:24 Started by user devspace 08:54:24 Running as SYSTEM 08:54:24 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 08:54:24 The recommended git tool is: NONE 08:54:24 No credentials specified 08:54:24 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 08:54:24 Fetching changes from the remote Git repository 08:54:24 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 08:54:24 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 08:54:24 > git --version # timeout=10 08:54:24 > git --version # 'git version 2.43.5' 08:54:24 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 08:54:24 > git rev-parse origin/merge_ci^{commit} # timeout=10 08:54:24 Checking out Revision 0254fd01d13b18c51539b9c5f787545fd3a748a2 (origin/merge_ci) 08:54:24 > git config core.sparsecheckout # timeout=10 08:54:24 > git checkout -f 0254fd01d13b18c51539b9c5f787545fd3a748a2 # timeout=10 08:54:25 Commit message: "Add version.properties to etc/omero.properties" 08:54:25 > git rev-list --no-walk 869cf36bd6b6fb7a509df148c3cf5012a117ce00 # timeout=10 08:54:25 Cleaning workspace 08:54:25 > git rev-parse --verify HEAD # timeout=10 08:54:25 Resetting working tree 08:54:25 > git reset --hard # timeout=10 08:54:25 > git clean -fdx # timeout=10 08:54:25 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 526 08:54:25 [OMERO-build] $ /bin/bash -xe /tmp/jenkins9606842600802110350.sh 08:54:25 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 08:54:25 + cd src 08:54:25 + export OMERO_BRANCH=merge_ci 08:54:25 + OMERO_BRANCH=merge_ci 08:54:25 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 08:54:25 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 08:54:25 + source /home/omero/settings.env 08:54:25 ++ OMERO_DB_HOST=pg 08:54:25 ++ OMERO_DB_USER=postgres 08:54:25 ++ OMERO_DB_PASS= 08:54:25 ++ OMERO_ROOT_PASS=omero 08:54:25 ++ OMERO_DATA_DIR=/OMERO 08:54:25 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 08:54:25 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 08:54:28 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 08:54:29 Collecting zeroc-ice==3.6.5 08:54:29 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 08:54:32 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 4.4 MB/s eta 0:00:00 08:54:33 Installing collected packages: zeroc-ice 08:54:33 Successfully installed zeroc-ice-3.6.5 08:54:34 08:54:34 [notice] A new release of pip available: 22.3.1 -> 25.2 08:54:34 [notice] To update, run: python3.11 -m pip install --upgrade pip 08:54:34 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 08:54:34 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 08:54:34 Collecting setuptools<66 08:54:34 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 08:54:34 Collecting omero-py 08:54:34 Using cached omero_py-5.21.1-py3-none-any.whl (2.8 MB) 08:54:35 Collecting appdirs 08:54:35 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 08:54:35 Collecting future 08:54:35 Using cached future-1.0.0-py3-none-any.whl (491 kB) 08:54:35 Collecting numpy<3 08:54:35 Using cached numpy-2.3.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 08:54:36 Collecting Pillow>=10.0.0 08:54:36 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) 08:54:36 Collecting PyYAML 08:54:36 Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 08:54:36 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 806.6/806.6 kB 13.6 MB/s eta 0:00:00 08:54:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 08:54:36 Collecting requests 08:54:36 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 08:54:36 Collecting portalocker 08:54:36 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 08:54:36 Collecting charset_normalizer<4,>=2 08:54:36 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) 08:54:36 Collecting idna<4,>=2.5 08:54:36 Using cached idna-3.10-py3-none-any.whl (70 kB) 08:54:36 Collecting urllib3<3,>=1.21.1 08:54:36 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB) 08:54:36 Collecting certifi>=2017.4.17 08:54:36 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB) 08:54:37 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 08:54:37 Attempting uninstall: setuptools 08:54:37 Found existing installation: setuptools 65.5.1 08:54:37 Uninstalling setuptools-65.5.1: 08:54:37 Successfully uninstalled setuptools-65.5.1 08:54:42 Successfully installed Pillow-11.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.3 omero-py-5.21.1 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.5.0 08:54:42 08:54:42 [notice] A new release of pip available: 22.3.1 -> 25.2 08:54:42 [notice] To update, run: python3.11 -m pip install --upgrade pip 08:54:42 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 08:54:42 ++ deactivate nondestructive 08:54:42 ++ '[' -n '' ']' 08:54:42 ++ '[' -n '' ']' 08:54:42 ++ hash -r 08:54:42 ++ '[' -n '' ']' 08:54:42 ++ unset VIRTUAL_ENV 08:54:42 ++ unset VIRTUAL_ENV_PROMPT 08:54:42 ++ '[' '!' nondestructive = nondestructive ']' 08:54:42 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 08:54:42 ++ export VIRTUAL_ENV 08:54:42 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:54:42 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:54:42 ++ export PATH 08:54:42 ++ '[' -n '' ']' 08:54:42 ++ '[' -z '' ']' 08:54:42 ++ _OLD_VIRTUAL_PS1= 08:54:42 ++ PS1='(omero-virtualenv) ' 08:54:42 ++ export PS1 08:54:42 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 08:54:42 ++ export VIRTUAL_ENV_PROMPT 08:54:42 ++ hash -r 08:54:42 + source docs/hudson/OMERO.sh 08:54:42 ++ set -e 08:54:42 ++ set -u 08:54:42 ++ set -x 08:54:42 ++ source docs/hudson/functions.sh 08:54:42 ++ echo Building merge_ci 08:54:42 Building merge_ci 08:54:42 ++ python3 ./build.py build-dev release-all 08:54:42 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:54:43 08:54:43 check-ivy: 08:54:43 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 08:54:43 Created dir: /home/omero/workspace/OMERO-build/src/target 08:54:43 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:54:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:54:43 08:54:43 build-scons: 08:54:43 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:54:44 No sub-builds to iterate on 08:54:44 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:54:44 08:54:44 buildlist: 08:54:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:54:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:54:44 08:54:44 clean: 08:54:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:54:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:54:44 08:54:44 python-clean: 08:54:44 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:54:44 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-0254fd01d1-ice36-b533') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:54:44 warnings.warn( 08:54:44 running clean 08:54:44 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 08:54:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:54:45 08:54:45 python-clean: 08:54:45 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:54:45 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-0254fd01d1-ice36-b533') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:54:45 warnings.warn( 08:54:45 running clean 08:54:45 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:54:45 08:54:45 python-clean: 08:54:45 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:54:45 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-0254fd01d1-ice36-b533') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:54:45 warnings.warn( 08:54:45 running clean 08:54:45 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 08:54:45 Deleting directory /home/omero/workspace/OMERO-build/src/target 08:54:45 08:54:45 build-scons: 08:54:45 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:54:45 08:54:45 build: 08:54:45 No sub-builds to iterate on 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:54:45 08:54:45 tools-init: 08:54:45 no-op 08:54:46 08:54:46 retrieve: 08:54:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:54:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:54:47 WARNING: An illegal reflective access operation has occurred 08:54:47 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 08:54:47 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 08:54:47 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 08:54:47 WARNING: All illegal access operations will be denied in a future release 08:55:11 08:55:11 prepare: 08:55:11 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:55:11 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 08:55:11 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 08:55:11 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:11 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:11 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:55:11 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 08:55:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:11 08:55:11 pre-compile: 08:55:11 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:11 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:11 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:11 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:11 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:11 08:55:11 compile: 08:55:11 no-op 08:55:11 08:55:11 package: 08:55:11 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 08:55:12 08:55:12 install: 08:55:12 :: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-576-0254fd01d1-ice36-b533 :: integration :: Fri Sep 26 08:54:45 UTC 2025 08:55:12 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 08:55:12 :: publishing :: omero#omero_client 08:55:12 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-0254fd01d1-ice36-b533/omero_client-5.6.3-576-0254fd01d1-ice36-b533.jar 08:55:12 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-0254fd01d1-ice36-b533/omero_client-5.6.3-576-0254fd01d1-ice36-b533.xml 08:55:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:55:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:55:12 08:55:12 retrieve: 08:55:12 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:55:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:12 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:55:12 08:55:12 dist: 08:55:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 08:55:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 08:55:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:55:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:55:12 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 08:55:12 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 08:55:12 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 08:55:12 Entering /home/omero/workspace/OMERO-build/src/components/tests... 08:55:12 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:55:13 08:55:13 copy-licenses: 08:55:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:55:13 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 08:55:13 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 08:55:13 08:55:13 copy-history: 08:55:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:55:13 08:55:13 copy-etc: 08:55:13 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 08:55:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 08:55:13 08:55:13 copy-sql: 08:55:13 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 08:55:16 08:55:16 copy-server: 08:55:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 08:55:16 08:55:16 copy-client: 08:55:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 08:55:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 08:55:17 08:55:17 update-version: 08:55:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 08:55:17 08:55:17 create-workdirs: 08:55:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 08:55:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 08:55:17 08:55:17 copy-luts: 08:55:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:55:17 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:55:17 08:55:17 test-compile: 08:55:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:55:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:55:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:55:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:55:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:55:18 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:55:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:55:18 08:55:18 testng-init: 08:55:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:55:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:20 08:55:20,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 08:55:20 08:55:20,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6903e134 - No custom configurators were discovered as a service. 08:55:20 08:55:20,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6903e134 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 08:55:20 08:55:20,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6903e134 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 08:55:20 08:55:20,652 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 08:55:20 08:55:20,652 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 08:55:20 08:55:20,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6903e134 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 08:55:20 08:55:20,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6903e134 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 08:55:20 08:55:20,655 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6903e134 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 08:55:20 08:55:20,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 08:55:20 08:55:20,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:55:20 08:55:20,656 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6035396c - Resource [logback.xml] occurs multiple times on the classpath. 08:55:20 08:55:20,656 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6035396c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:55:20 08:55:20,656 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6035396c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 08:55:20 08:55:20,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 08:55:20 08:55:20,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 08:55:20 08:55:20,872 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 08:55:20 08:55:20,874 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6d2c5e02 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 08:55:20 08:55:20,874 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6d2c5e02 - Please move "immediateFlush" property into the enclosing appender. 08:55:20 08:55:20,934 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6d2c5e02 - Setting the "immediateFlush" property of the enclosing appender to true 08:55:20 08:55:20,935 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 08:55:20 08:55:20,935 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 08:55:20 08:55:20,935 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 08:55:20 08:55:20,935 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 08:55:20 08:55:20,935 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 08:55:20 08:55:20,935 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 08:55:20 08:55:20,936 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@474998da - End of configuration. 08:55:20 08:55:20,938 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@31b5db46 - Registering current configuration as safe fallback point 08:55:20 08:55:20,938 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6903e134 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 08:55:20 08:55:20 lifecycle.test-compile: 08:55:20 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:55:20 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:55:21 warning: [options] bootstrap class path not set in conjunction with -source 8 08:55:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:22 import omero.grid.RawAccessRequest; 08:55:22 ^ 08:55:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:22 import omero.grid.RawAccessRequest; 08:55:22 ^ 08:55:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:22 import omero.grid.RawAccessRequest; 08:55:22 ^ 08:55:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:22 import omero.model.ImportJob; 08:55:22 ^ 08:55:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:55:22 import omero.model.ImportJobI; 08:55:22 ^ 08:55:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 08:55:23 IObject link = (IObject) linkClass.newInstance(); 08:55:23 ^ 08:55:23 where T is a type-variable: 08:55:23 T extends Object declared in class Class 08:55:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 08:55:23 T copy = (T) obj.getClass().newInstance(); 08:55:23 ^ 08:55:23 where T is a type-variable: 08:55:23 T extends Object declared in class Class 08:55:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:23 RawAccessRequest raw = new RawAccessRequest(); 08:55:23 ^ 08:55:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:23 RawAccessRequest raw = new RawAccessRequest(); 08:55:23 ^ 08:55:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:55:23 raw.repoUuid = legacy.root().getHash().getValue(); 08:55:23 ^ 08:55:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 08:55:23 raw.command = "rm"; 08:55:23 ^ 08:55:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 08:55:23 raw.args = Arrays.asList(path); 08:55:23 ^ 08:55:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 08:55:23 final IObject link = linkClass.newInstance(); 08:55:23 ^ 08:55:23 where T is a type-variable: 08:55:23 T extends Object declared in class Class 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 08:55:24 originalLink.setChild(annotationClass.newInstance()); 08:55:24 ^ 08:55:24 where T is a type-variable: 08:55:24 T extends Object declared in class Class 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:55:24 RoiResult r = svc.findByImage(id, new RoiOptions()); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:24 final RawAccessRequest request = new RawAccessRequest(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:24 final RawAccessRequest request = new RawAccessRequest(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:55:24 request.repoUuid = repo.root().getHash().getValue(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 08:55:24 request.command = "exists"; 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 08:55:24 request.args = Collections.singletonList(dirPath); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:24 final RawAccessRequest request = new RawAccessRequest(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:24 final RawAccessRequest request = new RawAccessRequest(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:55:24 request.repoUuid = repo.root().getHash().getValue(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 08:55:24 request.command = "exists"; 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 08:55:24 request.args = Collections.singletonList(dirName); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:24 final ImportJob importJob = new ImportJobI(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:55:24 final ImportJob importJob = new ImportJobI(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 08:55:24 importJob.setImageName(omero.rtypes.rstring(name)); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 08:55:24 importJob.setImageDescription(omero.rtypes.rstring(desc)); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:24 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:24 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:55:24 final String savedName = sent.getImageName().getValue().toString(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:55:24 final String savedDesc = sent.getImageDescription().getValue().toString(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:24 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:24 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:55:24 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 08:55:24 ^ 08:55:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:55:24 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 08:55:24 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 RoiResult r = svc.findByImage(image.getId().getValue(), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 08:55:25 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 08:55:25 table = svc.getTable(f.getId().getValue()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 RoiResult r = svc.findByImage(image.getId().getValue(), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:55:25 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:55:25 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 08:55:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:55:25 svc.getShapeStatsRestricted( 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:55:25 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:25 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:55:25 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:55:25 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:55:25 request.typesToIgnore = Collections.singletonList("Annotation"); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:55:25 request.typesToIgnore = Collections.singletonList("Annotation"); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:25 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:25 p2.setRelatedTo(p1); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:25 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:25 pixels1.setRelatedTo(pixels2); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:25 Pixels pixels = pixels1.getRelatedTo(); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:25 Assert.assertNull(pixels1.getRelatedTo()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:25 pixels1.setRelatedTo(pixels2); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:25 Pixels pixels = pixels1.getRelatedTo(); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:25 Assert.assertNull(pixels1.getRelatedTo()); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:25 ^ 08:55:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:25 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:55:25 ^ 08:55:25 Note: Some input files use unchecked or unsafe operations. 08:55:25 Note: Recompile with -Xlint:unchecked for details. 08:55:25 88 warnings 08:55:25 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1274991922.tmp 08:55:25 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 08:55:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:26 :: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-576-0254fd01d1-ice36-b533 :: integration :: Fri Sep 26 08:55:18 UTC 2025 08:55:26 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 08:55:26 :: publishing :: omero#OmeroJava-test 08:55:26 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-0254fd01d1-ice36-b533.jar 08:55:26 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-0254fd01d1-ice36-b533.xml 08:55:26 08:55:26 build-eclipse: 08:55:26 No sub-builds to iterate on 08:55:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:55:26 08:55:26 retrieve: 08:55:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:55:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:28 08:55:28 prepare: 08:55:28 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:55:29 08:55:29 release-clients: 08:55:29 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-576-0254fd01d1-ice36-b533.zip 08:55:34 08:55:34 release-zip: 08:55:34 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-576-0254fd01d1-ice36-b533.zip 08:55:44 08:55:44 BUILD SUCCESSFUL 08:55:44 Total time: 1 minute 1 second 08:55:44 ++ '[' -d .git ']' 08:55:44 ++ python3 ./build.py release-src 08:55:44 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:55:45 08:55:45 release-src-git: 08:55:45 Releasing openmicroscopy-5.6.3-576-0254fd01d1-ice36-b533 08:55:46 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-0254fd01d1-ice36-b533.zip 08:55:46 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-0254fd01d1-ice36-b533-base.zip 08:55:48 08:55:48 BUILD SUCCESSFUL 08:55:48 Total time: 3 seconds 08:55:48 ++ echo BUILD_NUMBER=533 08:55:48 ++ echo OMERO_BRANCH=merge_ci 08:55:48 ++ git_info 08:55:48 +++ git rev-parse HEAD 08:55:48 ++ HEAD=0254fd01d13b18c51539b9c5f787545fd3a748a2 08:55:48 ++ git log --max-count=1 0254fd01d13b18c51539b9c5f787545fd3a748a2 08:55:48 ++ env 08:55:48 ++ sort 08:55:48 Archiving artifacts 08:56:12 Finished: SUCCESS