Started by upstream project "Trigger" build number 313 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-linkcheck [BIOFORMATS-linkcheck] $ /bin/bash -xe /tmp/jenkins13876359401390078362.sh + TAG=snoopycrimecop/bioformats:merge_ci + sudo docker run --rm -w /bio-formats-build/bio-formats-documentation --entrypoint mvn snoopycrimecop/bioformats:merge_ci test -DskipSphinxTests=false -Dome-model.uri=/bio-formats-build/ome-model/docs/sphinx/target/sphinx/html [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for ome:bio-formats-documentation:jar:8.1.0-SNAPSHOT [WARNING] 'build.plugins.plugin.(groupId:artifactId)' must be unique but found duplicate declaration of plugin org.codehaus.mojo:exec-maven-plugin @ line 369, column 15 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [WARNING] The project ome:bio-formats-documentation:jar:8.1.0-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [INFO] [INFO] -------------------< ome:bio-formats-documentation >-------------------- [INFO] Building Bio-Formats documentation 8.1.0-SNAPSHOT [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-configuration) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 116 resources [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:parse-version (parse-version) @ bio-formats-documentation --- [INFO] [INFO] --- maven-dependency-plugin:3.1.1:unpack (unpack-ome-xml) @ bio-formats-documentation --- [INFO] Configured Artifact: org.openmicroscopy:ome-xml:6.3.7-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-api:sources:8.1.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-bsd:sources:8.1.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-gpl:sources:8.1.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:bio-formats-examples:sources:8.1.0-SNAPSHOT:jar [INFO] Unpacking /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/ome-xml with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-api with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-bsd with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-gpl with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/bio-formats-examples/8.1.0-SNAPSHOT/bio-formats-examples-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/sphinx/developers/examples with includes "" and excludes "" [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 10 resources [INFO] [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ bio-formats-documentation --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (gen-meta-support) @ bio-formats-documentation --- Parsing AFIReader Parsing AIMReader Parsing AliconaReader Parsing AmiraReader Parsing AnalyzeReader Parsing APLReader Parsing ARFReader Parsing BaseZeissReader Parsing BDReader Parsing BioRadGelReader Parsing BioRadReader Parsing BioRadSCNReader Parsing BrukerReader Parsing BurleighReader Parsing CanonRawReader Parsing CellomicsReader Parsing CellSensReader Parsing CellVoyagerReader Parsing CellWorxReader Parsing ColumbusReader Parsing CV7000Reader Parsing DCIMGReader Parsing DeltavisionReader Parsing DNGReader Parsing Ecat7Reader Parsing FEIReader Parsing FEITiffReader Parsing FlexReader Parsing FluoviewReader Parsing FujiReader Parsing FV1000Reader Parsing GatanDM2Reader Parsing GatanReader Parsing GelReader Parsing HamamatsuVMSReader Parsing HISReader Parsing HitachiReader Parsing HRDGDFReader Parsing I2IReader Parsing ImaconReader Parsing ImagicReader Parsing ImarisHDFReader Parsing ImarisReader Parsing ImarisTiffReader Parsing IMODReader Parsing ImprovisionTiffReader Parsing ImspectorReader Parsing InCell3000Reader Parsing InCellReader Parsing INRReader Parsing InveonReader Parsing IonpathMIBITiffReader Parsing IPLabReader Parsing IPWReader Parsing IvisionReader Parsing JEOLReader Parsing JPKReader Parsing JPXReader Parsing KhorosReader Parsing KodakReader Parsing L2DReader Parsing LeicaReader Parsing LeicaSCNReader Parsing LEOReader Parsing LiFlimReader Parsing LIFReader Parsing LIMReader Parsing LOFReader Parsing MetamorphReader Parsing MetamorphTiffReader Parsing MetaxpressTiffReader Parsing MIASReader Parsing MicroCTReader Parsing MikroscanTiffReader Parsing MINCReader Parsing MolecularImagingReader Parsing MRCReader Parsing MRWReader Parsing NAFReader Parsing ND2Reader Parsing NDPIReader Parsing NDPISReader Parsing NiftiReader Parsing NikonElementsTiffReader Parsing NikonReader Parsing NikonTiffReader Parsing OIRReader Parsing OlympusTileReader Parsing OpenlabRawReader Parsing OpenlabReader Parsing OperettaReader Parsing OxfordInstrumentsReader Parsing PCIReader Parsing PCORAWReader Parsing PDSReader Parsing PerkinElmerReader Parsing PhotoshopTiffReader Parsing PovrayReader Parsing PQBinReader Parsing PrairieReader Parsing PSDReader Parsing PyramidTiffReader Parsing QuesantReader Parsing RCPNLReader Parsing RHKReader Parsing SBIGReader Parsing ScanrReader Parsing SDTReader Parsing SeikoReader Parsing SEQReader Parsing SIFReader Parsing SimplePCITiffReader Parsing SISReader Parsing SlidebookReader Parsing SlidebookTiffReader Parsing SMCameraReader Parsing SPCReader Parsing SPEReader Parsing SpiderReader Parsing SVSReader Parsing TargaReader Parsing TCSReader Parsing TecanReader Parsing TillVisionReader Parsing TopometrixReader Parsing TrestleReader Parsing UBMReader Parsing UnisokuReader Parsing VarianFDFReader Parsing VectraReader Parsing VeecoReader Parsing VentanaReader Parsing VGSAMReader Parsing VisitechReader Parsing VolocityClippingReader Parsing VolocityReader Parsing WATOPReader Parsing XLEFReader Parsing ZeissCZIReader Parsing ZeissLMSReader Parsing ZeissLSMReader Parsing ZeissTIFFReader Parsing ZeissZVIReader Parsing APNGReader Parsing AVIReader Parsing BaseTiffReader Parsing BDVReader Parsing BIFormatReader Parsing BMPReader Parsing CellH5Reader Parsing DicomReader Parsing EPSReader Parsing FakeReader Parsing FilePatternReader Parsing FitsReader Parsing FlowSightReader Parsing GIFReader Parsing ICSReader Parsing IM3Reader Parsing ImageIOReader Parsing JPEG2000Reader Parsing JPEGReader Parsing KLBReader Parsing MicromanagerReader Parsing MinimalTiffReader Parsing MNGReader Parsing NRRDReader Parsing OBFReader Parsing OMETiffReader Parsing OMEXMLReader Parsing PCXReader Parsing PGMReader Parsing PictReader Parsing QTReader Parsing SlideBook7Reader Parsing TextReader Parsing TiffDelegateReader Parsing TiffJAIReader Parsing TiffReader Parsing TileJPEGReader Parsing ZipReader [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-structure-table) @ bio-formats-documentation --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-metadata-ratings) @ bio-formats-documentation --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-format-pages) @ bio-formats-documentation --- Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/3i-slidebook.rst: done. 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[INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (sphinx-linkcheck) @ bio-formats-documentation --- Running Sphinx v7.4.7 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading pickled environment... done /bio-formats-build/venv/lib/python3.9/site-packages/sphinx/builders/linkcheck.py:86: RemovedInSphinx80Warning: The default value for 'linkcheck_report_timeouts_as_broken' will change to False in Sphinx 8, meaning that request timeouts will be reported with a new 'timeout' status, instead of as 'broken'. This is intended to provide more detail as to the failure mode. See https://github.com/sphinx-doc/sphinx/issues/11868 for details. warnings.warn(deprecation_msg, RemovedInSphinx80Warning, stacklevel=1) building [mo]: targets for 0 po files that are out of date writing output... building [linkcheck]: targets for 426 source files that are out of date updating environment: 0 added, 345 changed, 0 removed reading sources... [ 0%] formats/3i-slidebook reading sources... [ 1%] formats/3i-slidebook-7 reading sources... [ 1%] formats/abd-tiff reading sources... [ 1%] formats/aim reading sources... [ 1%] formats/alicona-3d reading sources... [ 2%] formats/amersham-biosciences-gel reading sources... [ 2%] formats/amira-mesh reading sources... [ 2%] formats/amnis-flowsight reading sources... [ 3%] formats/analyze-75 reading sources... [ 3%] formats/andor-sif reading sources... [ 3%] formats/animated-png reading sources... [ 3%] formats/aperio-afi reading sources... [ 4%] formats/aperio-svs-tiff reading sources... 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[ 58%] metadata/HRDGDFReader writing output... [ 58%] metadata/HamamatsuVMSReader writing output... [ 59%] metadata/HitachiReader writing output... [ 59%] metadata/I2IReader writing output... [ 59%] metadata/ICSReader writing output... [ 59%] metadata/IM3Reader writing output... [ 60%] metadata/IMODReader writing output... [ 60%] metadata/INRReader writing output... [ 60%] metadata/IPLabReader writing output... [ 60%] metadata/IPWReader writing output... [ 61%] metadata/ImaconReader writing output... [ 61%] metadata/ImageIOReader writing output... [ 61%] metadata/ImagicReader writing output... [ 61%] metadata/ImarisHDFReader writing output... [ 62%] metadata/ImarisReader writing output... [ 62%] metadata/ImarisTiffReader writing output... [ 62%] metadata/ImprovisionTiffReader writing output... [ 62%] metadata/ImspectorReader writing output... [ 62%] metadata/InCell3000Reader writing output... [ 63%] metadata/InCellReader writing output... [ 63%] metadata/InveonReader writing output... [ 63%] metadata/IonpathMIBITiffReader writing output... [ 63%] metadata/IvisionReader writing output... [ 64%] metadata/JEOLReader writing output... [ 64%] metadata/JPEG2000Reader writing output... [ 64%] metadata/JPEGReader writing output... [ 64%] metadata/JPKReader writing output... [ 65%] metadata/JPXReader writing output... [ 65%] metadata/KLBReader writing output... [ 65%] metadata/KhorosReader writing output... [ 65%] metadata/KodakReader writing output... [ 65%] metadata/L2DReader writing output... [ 66%] metadata/LEOReader writing output... [ 66%] metadata/LIFReader writing output... [ 66%] metadata/LIMReader writing output... [ 66%] metadata/LOFReader writing output... [ 67%] metadata/LeicaReader writing output... [ 67%] metadata/LeicaSCNReader writing output... [ 67%] metadata/LiFlimReader writing output... [ 67%] metadata/MIASReader writing output... [ 68%] metadata/MINCReader writing output... [ 68%] metadata/MNGReader writing output... 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[ 87%] metadata/VolocityReader writing output... [ 87%] metadata/WATOPReader writing output... [ 88%] metadata/XLEFReader writing output... [ 88%] metadata/ZeissCZIReader writing output... [ 88%] metadata/ZeissLMSReader writing output... [ 88%] metadata/ZeissLSMReader writing output... [ 88%] metadata/ZeissTIFFReader writing output... [ 89%] metadata/ZeissZVIReader writing output... [ 89%] metadata/ZipReader writing output... [ 89%] supported-formats writing output... [ 89%] users/bisque/index writing output... [ 90%] users/cellprofiler/index writing output... [ 90%] users/comlinetools/conversion writing output... [ 90%] users/comlinetools/display writing output... [ 90%] users/comlinetools/domainlist writing output... [ 91%] users/comlinetools/edit writing output... [ 91%] users/comlinetools/formatlist writing output... [ 91%] users/comlinetools/ijview writing output... [ 91%] users/comlinetools/index writing output... [ 92%] users/comlinetools/mkfake writing output... 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https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BioRadReader.java (formats/bio-rad-pic: line 59) -ignored- http://www.bitplane.com/ (formats/bio-rad-scn: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java (formats/bitplane-imaris: line 10) -ignored- https://imaris.oxinst.com/ (formats/bitplane-imaris: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java (formats/bitplane-imaris: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImarisTiffReader.java (formats/bitplane-imaris: line 36) -ignored- https://imaris.oxinst.com/support/imaris-file-format (formats/bruker-mri: line 19) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BrukerReader.java (formats/burleigh: line 21) -ignored- 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https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/Ecat7Reader.java ( formats/eps: line 9) -ignored- https://www.adobe.com/ ( formats/eps: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/EPSReader.java ( formats/eps: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/EPSWriter.java (formats/evotecperkinelmer-opera-flex: line 9) -ignored- https://www.perkinelmer.com/ (formats/evotecperkinelmer-opera-flex: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FlexReader.java ( formats/fei: line 9) -ignored- https://www.fei.com/home/ ( formats/fei: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FEIReader.java (formats/fei-tiff: line 21) -ignored- 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https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/I2IReader.java ( formats/ics: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/ICSReader.java ( formats/ics: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/ICSWriter.java ( formats/ics: line 28) -ignored- https://valelab4.ucsf.edu/~nstuurman/IJplugins/Ics_Opener.html ( formats/imacon: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImaconReader.java (formats/imagepro-sequence: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SEQReader.java (formats/imagepro-workspace: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IPWReader.java ( formats/imagic: line 21) -ignored- 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permanently to https://www.scs2.net/next/index.php?id=120 (formats/picoquant-bin: line 9) redirect http://www.picoquant.com/ - permanently to https://www.picoquant.com/ (developers/java-library: line 125) redirect http://www.slf4j.org - with Found to https://www.slf4j.org/ (formats/cellomics: line 9) redirect http://www.thermofisher.com/ - permanently to https://www.thermofisher.com/uk/en/home.html (users/qu-matlab/index: line 13) redirect http://www.scs2.net/home/index.php?option=com_content&view=article&id=46%3Aqu-for-matlab&catid=34%3Aqu&Itemid=55&limitstart=3 - permanently to https://www.scs2.net/next/index.php?id=120 ( formats/rhk: line 10) redirect http://www.rhk-tech.com - permanently to https://www.rhk-tech.com/ (formats/picoquant-bin: line 26) redirect http://www.picoquant.com/products/category/software/symphotime-64-fluorescence-lifetime-imaging-and-correlation-software - permanently to 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to https://xml.apache.org/xalan-j/ (developers/python-dev: line 10) ok https://allencellmodeling.github.io/aicsimageio/ ( about/whats-new: line 3506) redirect https://artifacts.openmicroscopy.org - with Found to https://artifacts.openmicroscopy.org/ui/ (developers/java-library: line 7) redirect https://artifacts.openmicroscopy.org/artifactory - with Found to https://artifacts.openmicroscopy.org:443/ui/ (formats/amira-mesh: line 9) redirect http://www.vsg3d.com/ - permanently to https://www.thermofisher.com/uk/en/home/electron-microscopy/products/software-em-3d-vis/3d-visualization-analysis-software.html ( about/whats-new: line 604) ok https://bio-formats.readthedocs.io/en/stable/ (developers/java-library: line 80) ok https://asm.ow2.io ( formats/unisoku: line 10) redirect http://www.unisoku.com - permanently to https://www.unisoku.com/ ( users/r/index: line 10) ok https://bioconductor.org ( formats/cv7000: line 10) redirect http://www.yokogawa.com/ - permanently to 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https://docs.octave.org/interpreter/Making-Java-Classes-Available.html ( index: line 26) redirect https://docs.openmicroscopy.org/contributing/ - with Found to https://ome-contributing.readthedocs.io/en/latest/ (developers/components: line 145) redirect https://docs.openmicroscopy.org/contributing/ci-bio-formats.html - with Found to https://ome-contributing.readthedocs.io/en/latest/ci-bio-formats.html (developers/index: line 80) redirect https://docs.openmicroscopy.org/contributing/index.html - with Found to https://ome-contributing.readthedocs.io/en/latest/index.html ( formats/sbig: line 8) ok https://diffractionlimited.com/ ( formats/sbig: line 26) redirect https://diffractionlimited.com/downloads/sbig/AppNoteArchive.zip - permanently to https://cdn.diffractionlimited.com/downloads/sbig/AppNoteArchive.zip (users/comlinetools/index: line 147) ok https://docs.oracle.com/javase/7/docs/technotes/samples/hprof.html (users/fiji/index: line 28) ok 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ok https://downloads.openmicroscopy.org/images/DICOM/ ( formats/ecat7: line 29) ok https://downloads.openmicroscopy.org/images/ECAT7/ ( about/whats-new: line 1474) ok https://downloads.openmicroscopy.org/images/Flex/ ( about/whats-new: line 1472) ok https://downloads.openmicroscopy.org/images/CellWorX/ ( about/whats-new: line 1475) ok https://downloads.openmicroscopy.org/images/Gatan/ (formats/deltavision: line 36) ok https://downloads.openmicroscopy.org/images/DV/ (formats/bitplane-imaris: line 41) ok https://downloads.openmicroscopy.org/images/Imaris-IMS/ (formats/hamamatsu-vms: line 32) ok https://downloads.openmicroscopy.org/images/Hamamatsu-VMS/ ( about/whats-new: line 1476) ok https://downloads.openmicroscopy.org/images/ICS/ (formats/hamamatsu-ndpi: line 36) ok https://downloads.openmicroscopy.org/images/Hamamatsu-NDPI/ (formats/incell-1000: line 30) ok https://downloads.openmicroscopy.org/images/InCell2000/ ( formats/leo: line 30) ok https://downloads.openmicroscopy.org/images/LEO/ (formats/leica-lif: line 36) ok https://downloads.openmicroscopy.org/images/Leica-LIF/ (formats/incell-3000: line 30) ok https://downloads.openmicroscopy.org/images/InCell3000/ ( about/whats-new: line 1477) ok https://downloads.openmicroscopy.org/images/KLB/ (formats/leica-scn: line 32) ok https://downloads.openmicroscopy.org/images/Leica-SCN/ ( about/whats-new: line 874) ok https://downloads.openmicroscopy.org/images/Leica-XLEF/ ( formats/mrc: line 36) ok https://downloads.openmicroscopy.org/images/MRC/ (formats/micro-manager: line 32) ok https://downloads.openmicroscopy.org/images/Micro-Manager/ ( formats/nifti: line 30) ok https://downloads.openmicroscopy.org/images/NIfTI/ (formats/ome-tiff: line 31) ok https://downloads.openmicroscopy.org/images/OME-TIFF/ (formats/nikon-nis-elements-nd2: line 32) ok https://downloads.openmicroscopy.org/images/ND2/ ( about/whats-new: line 2109) ok https://downloads.openmicroscopy.org/images/NRRD/ (formats/imspector-obf: line 30) ok https://downloads.openmicroscopy.org/images/OBF/ ( about/whats-new: line 1151) ok https://downloads.openmicroscopy.org/images/OME-TIFF/2016-06/plate-companion/ ( about/whats-new: line 608) ok https://downloads.openmicroscopy.org/images/OME-TIFF/2016-06/BBBC017/ ( about/whats-new: line 655) ok https://downloads.openmicroscopy.org/images/Olympus-FluoView/ ( formats/ome-xml: line 31) ok https://downloads.openmicroscopy.org/images/OME-XML/ ( formats/png: line 34) ok https://downloads.openmicroscopy.org/images/PNG/ (formats/olympus-oir: line 32) ok https://downloads.openmicroscopy.org/images/Olympus-OIR ( about/whats-new: line 1478) ok https://downloads.openmicroscopy.org/images/PerkinElmer-Columbus/ ( formats/tiff: line 35) ok https://downloads.openmicroscopy.org/images/TIFF/ (formats/becker-hickl-fifo: line 29) ok https://downloads.openmicroscopy.org/images/SPC-FIFO/ (formats/perkinelmer-operetta: line 29) ok https://downloads.openmicroscopy.org/images/PerkinElmer-Operetta/ (formats/aperio-svs-tiff: line 32) ok https://downloads.openmicroscopy.org/images/SVS/ ( formats/trestle: line 31) ok https://downloads.openmicroscopy.org/images/Trestle/ ( about/whats-new: line 1480) ok https://downloads.openmicroscopy.org/images/Zeiss-CZI/ (formats/vectra-qptiff: line 29) ok https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/ ( about/whats-new: line 1479) ok https://downloads.openmicroscopy.org/images/Ventana/ (formats/vectra-qptiff: line 28) ok https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/perkinelmer/PKI_Image%20Format.docx (developers/building-bioformats: line 37) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/ - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/ (developers/file-reader: line 140) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ChannelSeparator.html - with Found to 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https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#initFile-java.lang.String- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 78) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#metadata - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 159) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#suffixNecessary - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 84) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#makeFilterMetadata-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 115) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#isThisType-byte:A- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 162) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#suffixSufficient - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 174) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 15) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#EM_DOMAIN - with Found to 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https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#FLIM_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 19) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#HCS_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 20) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#HISTOLOGY_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 17) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#GEL_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 18) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#GRAPHICS_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 21) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#LM_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 22) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#MEDICAL_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 24) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#SPM_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (developers/reader-guide: line 28) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#MUST_GROUP - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 23) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#SEM_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 25) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#UNKNOWN_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (developers/file-reader: line 21) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatHandler.html#setId-java.lang.String- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatHandler.html (developers/file-reader: line 10) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/file-reader: line 52) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getImageCount-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/file-reader: line 67) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getDimensionOrder-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/reader-guide: line 110) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#close-boolean- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/reader-guide: line 23) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#fileGroupOption-java.lang.String- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/matlab-dev: line 255) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getIndex-int-int-int- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html ( developers/wsi: line 41) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getOptimalTileHeight-- - with Found to 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with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/Memoizer.html (developers/matlab-dev: line 339) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/Memoizer.html#setId-java.lang.String- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/Memoizer.html (developers/reader-guide: line 210) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/codec/BaseCodec.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/codec/BaseCodec.html (developers/file-reader: line 151) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/MinMaxCalculator.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/MinMaxCalculator.html (developers/reader-guide: line 94) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/MetadataTools.html#populatePixels-loci.formats.meta.MetadataStore-loci.formats.IFormatReader-boolean- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/MetadataTools.html (developers/file-reader: line 116) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ReaderWrapper.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/ReaderWrapper.html (developers/reader-guide: line 84) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/MetadataTools.html#populatePixels-loci.formats.meta.MetadataStore-loci.formats.IFormatReader- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/MetadataTools.html (developers/file-reader: line 132) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/gui/BufferedImageReader.html - with 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https://downloads.openmicroscopy.org/bio-formats/8.0.0/artifacts/ (users/comlinetools/index: line 9) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/bftools.zip - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/artifacts/bftools.zip (developers/reader-guide: line 204) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/services/package-summary.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/services/package-summary.html ( about/whats-new: line 2992) ok https://downloads.openmicroscopy.org/ome-files-cpp/ (users/imagej/index: line 13) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/bioformats_package.jar - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/artifacts/bioformats_package.jar (users/ome-server/index: line 17) ok https://downloads.openmicroscopy.org/ome/2.6.1/ ( formats/avi: line 68) ok https://en.wikipedia.org/wiki/Audio_Video_Interleave (developers/java-library: line 32) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/formats-gpl.jar - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/artifacts/formats-gpl.jar (users/ome-server/index: line 119) ok https://downloads.openmicroscopy.org/ome/code/omeis.c (developers/service: line 7) ok https://en.wikipedia.org/wiki/Component-based_software_engineering (developers/service: line 7) ok https://en.wikipedia.org/wiki/Dependency_injection (users/ome-server/index: line 117) ok https://downloads.openmicroscopy.org/ome/code/BioFormats.pm (developers/service: line 7) ok https://en.wikipedia.org/wiki/Dependency_inversion_principle (users/imglib/index: line 4) ok https://en.wikipedia.org/wiki/Color_depth ( formats/dicom: line 29) ok https://en.wikipedia.org/wiki/List_of_freeware_health_software (developers/code-formatting: line 22) ok https://en.wikipedia.org/wiki/Indentation_style#Java (developers/index: line 59) redirect https://downloads.openmicroscopy.org/latest/ome-files-cpp/ - with Found to https://downloads.openmicroscopy.org/ome-files-cpp/0.5.0/ ( formats/targa: line 9) ok https://en.wikipedia.org/wiki/Truevision (users/focalpoint/index: line 4) ok https://en.wikipedia.org/wiki/Windows_Explorer (formats/minolta-mrw: line 26) ok https://en.wikipedia.org/wiki/Dcraw ( formats/mrc: line 66) ok https://en.wikipedia.org/wiki/MRC_%28file_format%29 (developers/java-library: line 185) ok https://errorprone.info/ (users/focalpoint/index: line 4) ok https://en.wikipedia.org/wiki/File_manager (users/comlinetools/precompressed: line 31) ok https://forum.image.sc/t/exporting-a-dicom-stack/99400 (developers/building-bioformats: line 21) ok https://git-scm.com/ ( formats/fits: line 50) ok https://fits.gsfc.nasa.gov/ ( developers/wsi: line 14) ok https://en.wikipedia.org/wiki/Pyramid_(image_processing) (users/comlinetools/precompressed: line 30) ok https://forum.image.sc/t/vsi-to-dcm-file-conversion/98249/5 ( about/whats-new: line 453) ok https://github.com/BIOP/quick-start-czi-reader (developers/dotnet-dev: line 10) ok https://github.com/BiologyTools/BioFormatsNET6 ( about/whats-new: line 3528) ok https://github.com/EsotericSoftware/kryo (developers/java-library: line 83) ok https://github.com/EsotericSoftware/minlog (developers/java-library: line 77) ok https://github.com/EsotericSoftware/reflectasm (developers/java-library: line 212) ok https://github.com/FasterXML/jackson-annotations ( about/whats-new: line 901) redirect https://github.blog/2021-09-01-improving-git-protocol-security-github/ - permanently to https://github.blog/security/application-security/improving-git-protocol-security-github/ (developers/java-library: line 209) ok https://github.com/FasterXML/jackson-core (developers/java-library: line 215) ok https://github.com/FasterXML/jackson-databind 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(developers/components: line 77) ok https://github.com/jai-imageio/jai-imageio-core (formats/bio-rad-gel: line 65) ok https://github.com/itsayellow/biorad1sc_reader (users/endrov/index: line 4) ok https://github.com/mahogny/Endrov (developers/components: line 212) ok https://github.com/mdbtools/mdbtools (developers/java-library: line 119) ok https://github.com/perf4j/perf4j (users/matlab/index: line 67) ok https://github.com/pramukta/bf-tools (developers/commit-testing: line 136) ok https://github.com/psexton/matlab-xunit (users/imglib/index: line 10) ok https://github.com/scifio/scifio/blob/master/src/main/java/io/scif/img/ImgOpener.java (users/qupath/index: line 4) ok https://github.com/qupath/qupath-bioformats-extension/ (developers/components: line 96) ok https://github.com/scijava/native-lib-loader (developers/java-library: line 169) ok https://github.com/stleary/JSON-java/blob/master/LICENSE ( users/itk/index: line 21) ok https://github.com/scifio/scifio-imageio 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10) redirect https://imagej.net/BigDataViewer - permanently to https://imagej.net/plugins/bdv/ (formats/gatan-digital-micrograph: line 26) ok https://imagej.net/ij/plugins/DM3_Reader.html ( formats/avi: line 27) ok https://imagej.net/ij/plugins/avi-reader.html ( formats/avi: line 28) ok https://imagej.net/ij/plugins/avi.html (formats/bio-rad-pic: line 27) ok https://imagej.net/ij/plugins/biorad.html (formats/windows-bitmap: line 26) ok https://imagej.net/ij/plugins/bmp-writer.html (formats/bruker-mri: line 24) ok https://imagej.net/ij/plugins/bruker.html ( formats/eps: line 27) ok https://imagej.net/ij/plugins/eps-writer.html ( formats/gif: line 27) ok https://imagej.net/ij/plugins/agr.html ( formats/gif: line 28) ok https://imagej.net/ij/plugins/gif-stack-writer.html ( formats/iplab: line 27) ok https://imagej.net/ij/plugins/iplab-reader.html (formats/simplepci-hcimage: line 9) ok https://hcimage.com (formats/zeiss-lsm: line 28) ok https://imagej.net/ij/plugins/lsm-reader.html ( formats/png: line 27) ok https://imagej.net/ij/plugins/png-writer.html (formats/deltavision: line 29) ok https://imagej.net/ij/plugins/track/delta.html (developers/python-dev: line 25) ok https://imagej.net/libs/scifio (developers/python-dev: line 25) ok https://imagej.net/software/imagej2 (users/imagej/index: line 29) ok https://imagej.net/plugins/view5d (users/imglib/index: line 4) ok https://imglib2.net/ (formats/imspector-obf: line 31) ok https://imspectordocs.readthedocs.io/en/latest/fileformat.html ( users/itk/index: line 4) ok https://itk.org/ (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/DataTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/DataTools.html (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/DateTools.html - with See Other to 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https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/Location.html#mapFile-java.lang.String-loci.common.IRandomAccess- - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Location.html (developers/reader-guide: line 146) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/Location.html#mapId-java.lang.String-java.lang.String- - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Location.html (developers/logging: line 29) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/Log4jTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Log4jTools.html (developers/logging: line 29) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/LogbackTools.html - with See Other to 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https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/units/quantity/Length.html#value-ome.units.unit.Unit- - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/units/quantity/Length.html (developers/matlab-dev: line 311) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/xml/meta/MetadataStore.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/xml/meta/MetadataStore.html (developers/java-library: line 164) ok https://javaee.github.io/jaxb-v2/ ( about/index: line 58) ok https://lists.openmicroscopy.org.uk/pipermail/ome-devel ( formats/jpx: line 9) ok https://jpeg.org/jpeg2000/ ( about/index: line 61) ok https://lists.openmicroscopy.org.uk/pipermail/ome-users (developers/java-library: line 107) ok https://junit.org/junit4/ (developers/components: line 96) ok https://libjpeg-turbo.org ( about/index: line 66) ok https://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy (developers/java-library: line 227) ok https://logback.qos.ch ( formats/dicom: line 35) ok https://learn.canceridc.dev/data/downloading-data ( about/index: line 142) ok https://loci.wisc.edu/bio-formats/ (users/visbio/index: line 4) ok https://loci.wisc.edu/visbio/ (developers/matlab-dev: line 56) broken https://mathworks.com/help/matlab/matlab_env/java-opts-file.html - 403 Client Error: Forbidden for url: https://www.mathworks.com/help/matlab/matlab_env/java-opts-file.html (developers/matlab-dev: line 56) broken https://mathworks.com/help/matlab/matlab_env/matlab-startup-folder.html - 403 Client Error: Forbidden for url: https://www.mathworks.com/help/matlab/matlab_env/matlab-startup-folder.html (developers/matlab-dev: line 29) broken https://mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html - 403 Client Error: Forbidden for url: https://www.mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html (users/micromanager/index: line 4) ok https://micro-manager.org 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formats/dicom: line 41) ok https://www.dicomstandard.org/current/ (formats/hitachi-s-4800: line 9) ok https://www.hitachi-hightech.com/file/us/pdf/library/technical/Hitachi_4800_STEM.pdf ( about/whats-new: line 3296) ok https://www.intelligent-imaging.com (formats/3i-slidebook: line 52) ok https://www.intelligent-imaging.com/slidebook (formats/hamamatsu-ndpi: line 29) ok https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html ( formats/jpeg: line 56) redirect https://www.jpeg.org/jpeg/index.html - permanently to https://jpeg.org/jpeg/index.html (formats/canon-dng: line 26) ok https://www.irfanview.com/ (formats/3i-slidebook-7: line 27) ok https://www.intelligent-imaging.com/slidebook/ (formats/ionpath-mibi: line 9) ok https://www.ionpath.com/ (users/knime/index: line 4) ok https://www.knime.com/ ( formats/jpk: line 9) redirect https://www.jpk.com - permanently to https://www.bruker.com/de/products-and-solutions/microscopes/bioafm.html?utm_source=JPK (formats/leica-lcs-lei: line 9) ok https://www.leica-microsystems.com/ (formats/leica-lif: line 27) ok https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/ ( formats/quesant: line 11) redirect https://www.kla-tencor.com/ - permanently to https://www.kla.com/ (formats/minolta-mrw: line 9) redirect https://www.konicaminolta.com/uk-en/index.html - permanently to https://www.konicaminolta.co.uk/en-gb (formats/aperio-afi: line 10) ok https://www.leicabiosystems.com/ (formats/aperio-afi: line 49) ok https://www.leicabiosystems.com/digital-pathology/manage/aperio-imagescope/ (users/graphic-con/index: line 4) ok https://www.lemkesoft.de/en/image-editing-slideshow-browser-batch-conversion-metadata-and-more-on-your-mac/ (formats/lambert-instruments-flim: line 9) redirect https://www.lambertinstruments.com - permanently to https://lambertinstruments.com/ ( formats/tiff: line 33) ok https://www.loc.gov/preservation/digital/formats/fdd/fdd000022.shtml (developers/java-library: line 203) ok https://www.mchange.com/projects/c3p0/ (developers/java-library: line 206) ok https://www.mchange.com/projects/mchange-commons-java/ (formats/amnis-flowsight: line 10) -ignored- https://www.merckmillipore.com: service unavailable ( formats/avi: line 9) ok https://www.microsoft.com/ (formats/metamorph-75-tiff: line 10) ok https://www.moleculardevices.com/ (formats/metamorph-stack-stk: line 60) redirect https://www.moleculardevices.com/systems/metamorph-research-imaging/metamorph-microscopy-automation-and-image-analysis-software - permanently to https://www.moleculardevices.com/products/cellular-imaging-systems/high-content-analysis/metamorph-microscopy (formats/mikroscan-tiff: line 10) ok https://www.mikroscan.com/ ( about/whats-new: line 70) ok https://www.mail-archive.com/tiff@lists.osgeo.org/msg00421.html (formats/animated-png: line 27) ok https://www.mozilla.org/en-US/firefox 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https://www.olympus-lifescience.com/en/ ( about/whats-new: line 2285) ok https://www.openmicroscopy.org (developers/matlab-dev: line 80) ok https://www.openmicroscopy.org/2015/04/28/omero-bio-formats-5-1-1.html (users/comlinetools/mkfake: line 19) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2015-01/SPW_xsd.html#PlateAcquisition_ID (formats/olympus-sis-tiff: line 9) ok https://www.olympus-sis.com/ ( users/idl/index: line 4) ok https://www.nv5geospatialsoftware.com/Products/IDL (metadata-summary: line 979) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_Description (formats/cellsens-vsi: line 9) ok https://www.olympus-global.com (metadata-summary: line 974) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#AnnotationRef_ID (metadata-summary: line 2099) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData (metadata-summary: line 984) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_ID (metadata-summary: line 989) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_Namespace (metadata-summary: line 969) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Arc_Type (formats/zeiss-czi: line 60) ok https://www.microsoft.com/en-us/download/details.aspx?id=48145 (metadata-summary: line 2104) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData_BigEndian (metadata-summary: line 994) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BooleanAnnotation_Value (metadata-summary: line 2109) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData_Length (metadata-summary: line 2114) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData_Compression (metadata-summary: line 999) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_AcquisitionMode (metadata-summary: line 1009) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_Color (metadata-summary: line 1014) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_ContrastMethod (metadata-summary: line 1019) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_EmissionWavelength (metadata-summary: line 1024) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_ExcitationWavelength (metadata-summary: line 1034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_Fluor (metadata-summary: line 1039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_ID (metadata-summary: line 1044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_IlluminationType (metadata-summary: line 1069) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_Name (metadata-summary: line 1064) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_NDFilter (metadata-summary: line 1074) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_PinholeSize (metadata-summary: line 1079) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_PockelCellSetting (metadata-summary: line 1084) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_SamplesPerPixel (metadata-summary: line 1109) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#CommentAnnotation_Value (metadata-summary: line 1119) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_Description (metadata-summary: line 2844) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DatasetRef_ID (metadata-summary: line 1134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_ID (metadata-summary: line 1144) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_Name (metadata-summary: line 1214) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Gain (metadata-summary: line 1209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Binning (metadata-summary: line 1219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_ID (metadata-summary: line 1224) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Offset (metadata-summary: line 1229) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_ReadOutRate (metadata-summary: line 1149) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_AmplificationGain (metadata-summary: line 1234) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Voltage (metadata-summary: line 1159) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Gain (metadata-summary: line 1164) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_ID (metadata-summary: line 1194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Type (metadata-summary: line 1184) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Offset (metadata-summary: line 1199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Voltage (metadata-summary: line 1289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DoubleAnnotation_Value (metadata-summary: line 1204) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Zoom (metadata-summary: line 1579) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DichroicRef_ID (metadata-summary: line 1244) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dichroic_ID (metadata-summary: line 1329) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_RadiusX (metadata-summary: line 1394) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_Description (metadata-summary: line 1334) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_RadiusY (metadata-summary: line 1669) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimentRef_ID (metadata-summary: line 1379) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_X (metadata-summary: line 1384) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_Y (metadata-summary: line 1459) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_Description (metadata-summary: line 1404) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_ID (metadata-summary: line 1409) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_Type (metadata-summary: line 1124) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroupRef_ID (metadata-summary: line 1469) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_ID (metadata-summary: line 1129) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterRef_ID (metadata-summary: line 1479) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_Name (metadata-summary: line 1419) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_Email (metadata-summary: line 1424) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_FirstName (metadata-summary: line 1429) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_ID (metadata-summary: line 1439) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_LastName (metadata-summary: line 1434) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_Institution (metadata-summary: line 1444) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_MiddleName (metadata-summary: line 1449) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_UserName (metadata-summary: line 1514) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filament_Type (metadata-summary: line 1594) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterSet_ID (metadata-summary: line 1584) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterRef_ID (metadata-summary: line 1029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterSetRef_ID (metadata-summary: line 1624) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_Description (metadata-summary: line 1544) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_FilterWheel (metadata-summary: line 1644) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_Name (metadata-summary: line 1634) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_ID (metadata-summary: line 1549) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_ID (metadata-summary: line 1629) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FolderRef_ID (metadata-summary: line 1574) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_Type (metadata-summary: line 1654) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_AcquisitionDate (metadata-summary: line 1664) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_Description (metadata-summary: line 1139) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImageRef_ID (metadata-summary: line 1714) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_CO2Percent (metadata-summary: line 1709) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_AirPressure (metadata-summary: line 1699) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_Name (metadata-summary: line 1684) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_ID (metadata-summary: line 1719) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_Humidity (metadata-summary: line 1724) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_Temperature (metadata-summary: line 1689) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#InstrumentRef_ID (metadata-summary: line 1734) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Instrument_ID (metadata-summary: line 1819) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Label_Y (metadata-summary: line 1814) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Label_X (metadata-summary: line 1824) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_FrequencyMultiplication (metadata-summary: line 1834) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_LaserMedium (metadata-summary: line 1854) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_PockelCell (metadata-summary: line 1864) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Pulse (metadata-summary: line 1874) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_RepetitionRate (metadata-summary: line 1889) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Type (metadata-summary: line 1894) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Wavelength (metadata-summary: line 1884) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Tuneable (metadata-summary: line 1474) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Leader_ID (metadata-summary: line 1049) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_Attenuation (metadata-summary: line 1054) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_ID (metadata-summary: line 1059) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_Wavelength (metadata-summary: line 939) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSource_ID (metadata-summary: line 959) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSource_Power (metadata-summary: line 1989) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_MarkerStart (metadata-summary: line 1984) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_MarkerEnd (metadata-summary: line 2034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_X1 (metadata-summary: line 2039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_X2 (metadata-summary: line 2094) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LongAnnotation_Value (metadata-summary: line 2044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_Y1 (metadata-summary: line 944) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_LotNumber (metadata-summary: line 949) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_Manufacturer (metadata-summary: line 954) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_Model (metadata-summary: line 2049) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_Y2 (metadata-summary: line 964) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_SerialNumber (metadata-summary: line 2139) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Height (metadata-summary: line 2194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Width (metadata-summary: line 2199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_X (metadata-summary: line 2204) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Y (metadata-summary: line 1694) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulationRef_ID (metadata-summary: line 2214) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulation_ID (metadata-summary: line 2224) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulation_Type (metadata-summary: line 2264) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Microscope_Type (metadata-summary: line 2334) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_CorrectionCollar (metadata-summary: line 2339) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_ID (metadata-summary: line 2344) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_Medium (metadata-summary: line 2349) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_RefractiveIndex (metadata-summary: line 2279) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Correction (metadata-summary: line 2274) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_CalibratedMagnification (metadata-summary: line 2284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_ID (metadata-summary: line 2289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Immersion (metadata-summary: line 2294) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Iris (metadata-summary: line 2299) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_LensNA (metadata-summary: line 2319) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_NominalMagnification (metadata-summary: line 2329) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_WorkingDistance (metadata-summary: line 2364) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_DimensionOrder (metadata-summary: line 2359) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_BigEndian (metadata-summary: line 2369) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_ID (metadata-summary: line 2374) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_Interleaved (metadata-summary: line 2379) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeX (metadata-summary: line 2384) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeY (metadata-summary: line 2389) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeZ (metadata-summary: line 2394) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SignificantBits (metadata-summary: line 2404) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeT (metadata-summary: line 2399) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeC (metadata-summary: line 2409) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeX (metadata-summary: line 2414) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeY (metadata-summary: line 2419) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeZ (metadata-summary: line 2424) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_TimeIncrement (metadata-summary: line 2429) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_Type (metadata-summary: line 2449) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_HashSHA1 (metadata-summary: line 2439) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_DeltaT (metadata-summary: line 2444) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_ExposureTime (metadata-summary: line 2454) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionX (metadata-summary: line 2459) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionY (metadata-summary: line 2464) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionZ (metadata-summary: line 2549) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_Description (metadata-summary: line 2469) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheC (metadata-summary: line 2474) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheT (metadata-summary: line 2554) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_EndTime (metadata-summary: line 2559) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_ID (metadata-summary: line 2564) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_MaximumFieldCount (metadata-summary: line 2479) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheZ (metadata-summary: line 2569) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_Name (metadata-summary: line 2499) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Description (metadata-summary: line 2574) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_StartTime (metadata-summary: line 2489) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ColumnNamingConvention (metadata-summary: line 2494) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Columns (metadata-summary: line 2504) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ExternalIdentifier (metadata-summary: line 2509) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ID (metadata-summary: line 2514) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Name (metadata-summary: line 2519) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_RowNamingConvention (metadata-summary: line 2524) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Rows (metadata-summary: line 2529) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Status (metadata-summary: line 2534) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_WellOriginX (metadata-summary: line 2539) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_WellOriginY (metadata-summary: line 2659) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Point_X (metadata-summary: line 2664) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Point_Y (metadata-summary: line 2849) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_Description (metadata-summary: line 2784) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_MarkerEnd (metadata-summary: line 2704) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polygon_Points (metadata-summary: line 2789) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_MarkerStart (metadata-summary: line 2864) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_ID (metadata-summary: line 2869) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_Name (metadata-summary: line 2879) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_Description (metadata-summary: line 1649) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROIRef_ID (metadata-summary: line 2794) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_Points (metadata-summary: line 2899) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_Description (metadata-summary: line 1869) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pump_ID (metadata-summary: line 3249) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ReagentRef_ID (metadata-summary: line 2884) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_ID (metadata-summary: line 2904) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_ID (metadata-summary: line 2889) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_Name (metadata-summary: line 2909) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_Name (metadata-summary: line 2914) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_ReagentIdentifier (metadata-summary: line 3019) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Description (metadata-summary: line 2944) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Height (metadata-summary: line 2999) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Width (metadata-summary: line 3004) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_X (metadata-summary: line 3024) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ID (metadata-summary: line 3009) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Y (metadata-summary: line 3039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ProtocolDescription (metadata-summary: line 3029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Name (metadata-summary: line 3044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ProtocolIdentifier (metadata-summary: line 3049) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ReagentSetDescription (metadata-summary: line 3054) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ReagentSetIdentifier (metadata-summary: line 3034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Screen_PlateRef_ID (metadata-summary: line 3059) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Type (metadata-summary: line 1294) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FillColor (metadata-summary: line 1299) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FillRule (metadata-summary: line 1304) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontFamily (metadata-summary: line 1309) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontSize (metadata-summary: line 1314) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontStyle (metadata-summary: line 1319) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_ID (metadata-summary: line 1324) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Locked (metadata-summary: line 1339) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeColor (metadata-summary: line 1344) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeDashArray (metadata-summary: line 1349) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeWidth (metadata-summary: line 1374) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Transform (metadata-summary: line 1354) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Text (metadata-summary: line 1359) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheC (metadata-summary: line 1364) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheT (metadata-summary: line 1369) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheZ (metadata-summary: line 3064) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Name (metadata-summary: line 3069) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_X (metadata-summary: line 3104) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TagAnnotation_Value (metadata-summary: line 3074) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Y (metadata-summary: line 3129) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TermAnnotation_Value (metadata-summary: line 3079) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Z (metadata-summary: line 3134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstC (metadata-summary: line 3139) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstT (metadata-summary: line 3144) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstZ (metadata-summary: line 3154) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_PlaneCount (metadata-summary: line 3149) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_IFD (metadata-summary: line 3179) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TimestampAnnotation_Value (metadata-summary: line 3209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_TiffData_UUID_FileName (metadata-summary: line 3184) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutIn (metadata-summary: line 3194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutOut (metadata-summary: line 3189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutInTolerance (metadata-summary: line 3199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutOutTolerance (metadata-summary: line 3214) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#UniversallyUniqueIdentifier (metadata-summary: line 3204) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_Transmittance (metadata-summary: line 2579) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSampleRef_ID (metadata-summary: line 3269) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_ID (metadata-summary: line 3279) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_Index (metadata-summary: line 3284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_PositionX (metadata-summary: line 3289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_PositionY (metadata-summary: line 3224) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Color (metadata-summary: line 3294) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_Timepoint (metadata-summary: line 3229) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Column (metadata-summary: line 3234) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ExternalDescription (metadata-summary: line 3239) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ExternalIdentifier ( about/index: line 38) ok https://www.openmicroscopy.org/citing-ome (formats/ome-tiff: line 57) ok https://www.openmicroscopy.org/commercial-partners/#partnerships ( about/index: line 24) ok https://www.openmicroscopy.org/licensing ( about/index: line 72) ok https://www.openmicroscopy.org/omero/ ( about/whats-new: line 902) ok https://www.openmicroscopy.org/security/advisories/2021-SV4/ ( about/index: line 56) ok https://www.openmicroscopy.org/support/ (metadata-summary: line 3244) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ID (metadata-summary: line 3254) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Row (metadata-summary: line 3314) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#XMLAnnotation_Value (metadata-summary: line 3259) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Type (formats/mias-maia-scientific: line 9) ok https://www.selectscience.net/company/maia-scientific ( formats/nef: line 27) ok https://www.outbackphoto.com/workshop/NEF_conversion/neffile1.zip ( formats/nef: line 56) ok https://www.outbackphoto.com/workshop/NEF_conversion/nefconversion.html (developers/logging: line 7) ok https://www.slf4j.org/manual.html#libraries (formats/princeton-instruments-spe: line 9) redirect https://www.princetoninstruments.com - with Found to https://www.teledynevisionsolutions.com/company/about-teledyne-vision-solutions/teledyne-princeton-instruments/ ( formats/ecat7: line 9) redirect https://www.siemens.com/global/en/home.html - with Found to https://www.siemens.com/global/en.html ( formats/i2i: line 9) ok https://www.umassmed.edu/ ( formats/gif: line 11) ok https://www.unisys.com/ (formats/tecan-spark-cyto-workspace: line 10) ok https://www.tecan.com/ (developers/java-library: line 101) ok https://www.unidata.ucar.edu/software/netcdf-java/ ( formats/gif: line 33) ok https://www.w3.org/Graphics/GIF/spec-gif89a.txt ( formats/seiko: line 10) redirect https://www.seiko.co.jp/en - permanently to https://www.seiko.co.jp:443/en/ (formats/zeiss-axiovision-tiff: line 27) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html (formats/bio-rad-pic: line 11) redirect https://www.zeiss.com - permanently to https://www.zeiss.com/corporate/en/home.html (formats/zeiss-czi: line 7) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen/czi-image-file-format.html (formats/zeiss-axiovision-zvi: line 9) redirect https://www.zeiss.com/microscopy - permanently to https://www.zeiss.com/microscopy/en/home.html?vaURL=www.zeiss.com/microscopy (formats/zeiss-axiovision-zvi: line 27) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html ( about/whats-new: line 876) ok https://zenodo.org/ (about/bug-reporting: line 64) redirect https://zenodo.org/communities/bio-formats - with Found to https://zenodo.org/communities/bio-formats/records (formats/pcx-pc-paintbrush: line 49) ok https://www.zeiss.com/microscopy/en/service-support/downloads.html ( formats/mrc: line 11) ok https://www2.mrc-lmb.cam.ac.uk/ (formats/cellvoyager: line 10) ok https://www.yokogawa.com/ (formats/zeiss-axiovision-zvi: line 67) ok https://www.zeiss.com/microscopy/en/service-support/support/discontinued-products.html build finished with problems. [ERROR] Command execution failed. org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal (DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute (DefaultExecutor.java:166) at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:804) at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:751) at org.codehaus.mojo.exec.ExecMojo.execute (ExecMojo.java:313) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:210) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:156) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:148) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:957) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:289) at org.apache.maven.cli.MavenCli.main (MavenCli.java:193) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:77) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:568) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347) [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 05:39 min [INFO] Finished at: 2024-12-18T00:30:07Z [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.codehaus.mojo:exec-maven-plugin:1.6.0:exec (sphinx-linkcheck) on project bio-formats-documentation: Command execution failed.: Process exited with an error: 1 (Exit value: 1) -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException Build step 'Execute shell' marked build as failure Finished: FAILURE