Started by upstream project "BIOFORMATS-test-repo" build number 297
originally caused by:
Started by upstream project "Trigger" build number 319
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17044355306140308966.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47061_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Resolving artifacts
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml
compile-tests:
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Resolving artifacts
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 05:54:30,589 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:54:30,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 05:54:30,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:54:30,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:54:30,592 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:54:30,592 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:54:30,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:54:30,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:54:30,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:54:30,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:54:30,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:54:30,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:54:30,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:54:30,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:54:30,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:54:30,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:54:30,882 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:54:30,882 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:54:30,882 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:54:30,883 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:54:30,883 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 05:54:30,884 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 05:54:30,884 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-24 05:54:30,895] [main] java.version = 1.8.0_342
[testng] 05:54:30,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:54:30,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:54:30,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-24_05-54-30.log]
[testng] 05:54:30,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-24 05:54:30,953] [main] testng.directory = /data
[testng] [2024-12-24 05:54:30,953] [main] testng.configDirectory = /config
[testng] [2024-12-24 05:54:30,966] [main] testng.multiplier = 1.0
[testng] [2024-12-24 05:54:30,966] [main] testng.in-memory = false
[testng] [2024-12-24 05:54:30,967] [main] testng.allow-missing = false
[testng] [2024-12-24 05:54:30,967] [main] user.language = en
[testng] [2024-12-24 05:54:30,967] [main] user.country = ${user.country}
[testng] [2024-12-24 05:54:30,967] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-24 05:54:38,033] [main] ----------------------------------------
[testng] [2024-12-24 05:54:38,033] [main] Total files: 22
[testng] [2024-12-24 05:54:38,033] [main] Scan time: 7.066 s (321 ms/file)
[testng] [2024-12-24 05:54:38,033] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-24 05:55:08,744] [pool-1-thread-1] Initializing /data/converted/dub01.ipw:
[testng] 05:55:08,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:55:08,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:08,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-24_05-55-08.log]
[testng] 05:55:08,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d5c1913 - End of configuration.
[testng] [2024-12-24 05:55:09,587] [pool-1-thread-12] Initializing /data/samples/HEART.SEQ:
[testng] 05:55:09,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:55:09,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:09,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-24_05-55-09.log]
[testng] 05:55:09,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25b038b6 - End of configuration.
[testng] [2024-12-24 05:55:10,529] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 05:55:10,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:55:10,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:10,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-24_05-55-10.log]
[testng] 05:55:10,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68f6b687 - End of configuration.
[testng] [2024-12-24 05:55:11,367] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw:
[testng] 05:55:11,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:55:11,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:11,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-24_05-55-11.log]
[testng] 05:55:11,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59766910 - End of configuration.
[testng] [2024-12-24 05:55:12,253] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 05:55:12,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:55:12,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:12,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-24_05-55-12.log]
[testng] 05:55:12,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40f292d5 - End of configuration.
[testng] [2024-12-24 05:55:13,151] [pool-1-thread-8] Initializing /data/converted/clown.seq:
[testng] 05:55:13,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:55:13,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:13,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-24_05-55-13.log]
[testng] 05:55:13,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e044654 - End of configuration.
[testng] [2024-12-24 05:55:14,165] [pool-1-thread-7] Initializing /data/xiuwen/head2.seq:
[testng] 05:55:14,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:55:14,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:14,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-24_05-55-14.log]
[testng] 05:55:14,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@587038af - End of configuration.
[testng] [2024-12-24 05:55:15,184] [pool-1-thread-6] Initializing /data/converted/dub01.seq:
[testng] 05:55:15,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:55:15,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:15,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-24_05-55-15.log]
[testng] 05:55:15,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@576b3864 - End of configuration.
[testng] [2024-12-24 05:55:16,246] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] 05:55:16,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:55:16,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:16,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-24_05-55-16.log]
[testng] 05:55:16,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c10f9e3 - End of configuration.
[testng] [2024-12-24 05:55:18,289] [pool-1-thread-4] Initializing /data/converted/clown8c.tif:
[testng] 05:55:18,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:55:18,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:18,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-24_05-55-18.log]
[testng] 05:55:18,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c436ad - End of configuration.
[testng] [2024-12-24 05:55:20,275] [pool-1-thread-3] Initializing /data/converted/mitosis-test.seq:
[testng] 05:55:20,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:55:20,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:20,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-24_05-55-20.log]
[testng] 05:55:20,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a1e9d4e - End of configuration.
[testng] [2024-12-24 05:55:21,217] [pool-1-thread-2] Initializing /data/alex/AFAset0003.ips:
[testng] 05:55:21,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:55:21,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:21,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-24_05-55-21.log]
[testng] 05:55:21,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a8dd22 - End of configuration.
[testng] [2024-12-24 05:55:30,262] [pool-1-thread-10] Initializing /data/converted/clown.ipw:
[testng] [2024-12-24 05:55:31,134] [pool-1-thread-8] Initializing /data/converted/clown8c.seq:
[testng] [2024-12-24 05:55:32,053] [pool-1-thread-3] Initializing /data/converted/clown.tif:
[testng] [2024-12-24 05:55:32,964] [pool-1-thread-1] Initializing /data/samples/TISSUE.TIF:
[testng] [2024-12-24 05:55:35,181] [pool-1-thread-12] Initializing /data/converted/mitosis-test.tif:
[testng] [2024-12-24 05:55:37,396] [pool-1-thread-6] Initializing /data/converted/dub01.pic:
[testng] [2024-12-24 05:55:38,315] [pool-1-thread-11] Initializing /data/converted/mitosis-test.ipw:
[testng] [2024-12-24 05:55:39,264] [pool-1-thread-9] Initializing /data/samples/PROBE.TIF:
[testng] [2024-12-24 05:55:42,231] [pool-1-thread-7] Initializing /data/samples/FLDUAL.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 45 seconds
Finished: SUCCESS