Started by upstream project "BIOFORMATS-test-repo" build number 298
originally caused by:
Started by upstream project "Trigger" build number 320
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins7753411315643079797.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47211_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:11:20,345 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:11:20,346 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 05:11:20,346 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:11:20,347 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:11:20,348 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:11:20,348 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:11:20,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:11:20,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:11:20,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:11:20,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:11:20,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:11:20,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:11:20,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:11:20,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:11:20,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:11:20,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:11:20,541 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:11:20,541 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:11:20,541 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:11:20,542 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:11:20,542 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 05:11:20,543 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 05:11:20,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-25 05:11:20,551] [main] java.version = 17.0.2
[testng] 05:11:20,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:11:20,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:11:20,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_05-11-20.log]
[testng] 05:11:20,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-25 05:11:20,597] [main] testng.directory = /data
[testng] [2024-12-25 05:11:20,597] [main] testng.configDirectory = /config
[testng] [2024-12-25 05:11:20,605] [main] testng.multiplier = 1.0
[testng] [2024-12-25 05:11:20,606] [main] testng.in-memory = false
[testng] [2024-12-25 05:11:20,606] [main] testng.allow-missing = false
[testng] [2024-12-25 05:11:20,606] [main] user.language = en
[testng] [2024-12-25 05:11:20,606] [main] user.country = ${user.country}
[testng] [2024-12-25 05:11:20,606] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-25 05:11:38,730] [main] ----------------------------------------
[testng] [2024-12-25 05:11:38,731] [main] Total files: 944
[testng] [2024-12-25 05:11:38,731] [main] Scan time: 18.124 s (19 ms/file)
[testng] [2024-12-25 05:11:38,731] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-25 05:13:56,453] [pool-1-thread-1] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] 05:13:56,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:13:56,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:13:56,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_05-13-56.log]
[testng] 05:13:56,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b0c4bda - End of configuration.
[testng] [2024-12-25 05:13:59,047] [pool-1-thread-12] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] 05:13:59,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:13:59,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:13:59,048 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_05-13-59.log]
[testng] 05:13:59,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27e81945 - End of configuration.
[testng] [2024-12-25 05:14:01,461] [pool-1-thread-11] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] 05:14:01,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:14:01,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:01,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_05-14-01.log]
[testng] 05:14:01,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@117703b7 - End of configuration.
[testng] [2024-12-25 05:14:04,325] [pool-1-thread-10] Initializing /data/brian/Series002_z01.tif:
[testng] 05:14:04,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:14:04,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:04,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_05-14-04.log]
[testng] 05:14:04,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d519fe0 - End of configuration.
[testng] [2024-12-25 05:14:07,921] [pool-1-thread-9] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] 05:14:07,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:14:07,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:07,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_05-14-07.log]
[testng] 05:14:07,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ccb10f - End of configuration.
[testng] [2024-12-25 05:14:10,948] [pool-1-thread-8] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] 05:14:10,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:14:10,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:10,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_05-14-10.log]
[testng] 05:14:10,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35349a0f - End of configuration.
[testng] [2024-12-25 05:14:12,910] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 05:14:12,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:14:12,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:12,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_05-14-12.log]
[testng] 05:14:12,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e7082e7 - End of configuration.
[testng] [2024-12-25 05:14:14,881] [pool-1-thread-6] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] 05:14:14,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:14:14,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:14,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_05-14-14.log]
[testng] 05:14:14,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e1a0082 - End of configuration.
[testng] [2024-12-25 05:14:16,973] [pool-1-thread-5] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng] 05:14:16,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:14:16,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:16,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_05-14-16.log]
[testng] 05:14:16,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@392f6c41 - End of configuration.
[testng] [2024-12-25 05:14:19,079] [pool-1-thread-4] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 05:14:19,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:14:19,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:19,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_05-14-19.log]
[testng] 05:14:19,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6081c8 - End of configuration.
[testng] [2024-12-25 05:14:20,821] [pool-1-thread-3] Initializing /data/primate/Leica_Image.tif:
[testng] 05:14:20,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:14:20,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:20,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_05-14-20.log]
[testng] 05:14:20,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45139bd0 - End of configuration.
[testng] [2024-12-25 05:14:22,648] [pool-1-thread-2] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 05:14:22,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:14:22,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:14:22,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_05-14-22.log]
[testng] 05:14:22,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c028613 - End of configuration.
[testng] [2024-12-25 05:14:39,647] [pool-1-thread-4] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] [2024-12-25 05:14:42,417] [pool-1-thread-3] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] [2024-12-25 05:16:17,223] [pool-1-thread-10] Initializing /data/brian/Series002_z00_ch00.tif:
[testng] 07:16:08,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:16:08,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:16:08,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_07-16-08.log]
[testng] 07:16:08,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@448b808a - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 124 minutes 53 seconds
Finished: SUCCESS