00:40:00 Started by upstream project "Trigger" build number 15 00:40:00 originally caused by: 00:40:00 Started by timer 00:40:00 Running as SYSTEM 00:40:00 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:40:00 The recommended git tool is: NONE 00:40:00 No credentials specified 00:40:00 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:40:00 Fetching changes from the remote Git repository 00:40:00 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:40:00 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:40:00 > git --version # timeout=10 00:40:00 > git --version # 'git version 2.39.3' 00:40:00 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:40:03 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:40:03 Checking out Revision ef9fea180668d9465b30b9e50fbcc1fcf6ed4dc2 (origin/merge_ci) 00:40:03 > git config core.sparsecheckout # timeout=10 00:40:03 > git checkout -f ef9fea180668d9465b30b9e50fbcc1fcf6ed4dc2 # timeout=10 00:40:03 Commit message: "Add version.properties to etc/omero.properties" 00:40:03 > git rev-list --no-walk 55f26f92207aa452ce74d973862082b3846071bf # timeout=10 00:40:03 Cleaning workspace 00:40:03 > git rev-parse --verify HEAD # timeout=10 00:40:03 Resetting working tree 00:40:03 > git reset --hard # timeout=10 00:40:03 > git clean -fdx # timeout=10 00:40:04 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 12 00:40:04 [OMERO-build] $ /bin/bash -xe /tmp/jenkins17540170540740313715.sh 00:40:04 + mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz . 00:40:04 + cd src 00:40:04 + export OMERO_BRANCH=merge_ci 00:40:04 + OMERO_BRANCH=merge_ci 00:40:04 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:40:04 + source /home/omero/settings.env 00:40:04 ++ OMERO_DB_HOST=pg 00:40:04 ++ OMERO_DB_USER=postgres 00:40:04 ++ OMERO_DB_PASS= 00:40:04 ++ OMERO_ROOT_PASS=omero 00:40:04 ++ OMERO_DATA_DIR=/OMERO 00:40:04 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:40:04 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:40:07 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:40:08 Collecting zeroc-ice==3.6.5 00:40:09 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:40:20 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 00:40:20 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 00:40:20 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 00:40:20 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0) 00:40:21 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.0) 00:40:21 Collecting omero-py 00:40:21 Downloading omero_py-5.19.1-py3-none-any.whl (2.8 MB) 00:40:22 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 00:40:22 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 00:40:22 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 00:40:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:40:22 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 00:40:22 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:40:22 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 00:40:22 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 00:40:22 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 00:40:22 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 00:40:22 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 00:40:22 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 00:40:22 Installing collected packages: omero-py 00:40:22 Attempting uninstall: omero-py 00:40:22 Found existing installation: omero-py 5.19.0 00:40:22 Uninstalling omero-py-5.19.0: 00:40:24 Successfully uninstalled omero-py-5.19.0 00:40:26 Successfully installed omero-py-5.19.1 00:40:26 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 00:40:26 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 00:40:26 + source docs/hudson/OMERO.sh 00:40:26 ++ set -e 00:40:26 ++ set -u 00:40:26 ++ set -x 00:40:26 ++ source docs/hudson/functions.sh 00:40:26 ++ echo Building merge_ci 00:40:26 Building merge_ci 00:40:26 ++ python3 ./build.py build-dev release-all 00:40:26 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 00:40:27 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:40:28 00:40:28 check-ivy: 00:40:28 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:40:28 Created dir: /home/omero/workspace/OMERO-build/src/target 00:40:28 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:28 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:29 00:40:29 build-scons: 00:40:29 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:40:29 No sub-builds to iterate on 00:40:29 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:40:30 00:40:30 buildlist: 00:40:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:30 00:40:30 clean: 00:40:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:30 00:40:30 python-clean: 00:40:30 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:40:30 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-ef9fea1806-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:40:30 warnings.warn( 00:40:30 running clean 00:40:30 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:40:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:40:30 00:40:30 python-clean: 00:40:30 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:40:30 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-ef9fea1806-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:40:30 warnings.warn( 00:40:30 running clean 00:40:30 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:40:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:40:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:31 00:40:31 python-clean: 00:40:31 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:40:31 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-ef9fea1806-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:40:31 warnings.warn( 00:40:31 running clean 00:40:31 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:40:31 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:40:31 00:40:31 build-scons: 00:40:31 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:40:31 00:40:31 build: 00:40:31 No sub-builds to iterate on 00:40:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:40:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:40:31 00:40:31 tools-init: 00:40:31 no-op 00:40:31 00:40:31 retrieve: 00:40:31 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:32 WARNING: An illegal reflective access operation has occurred 00:40:32 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:40:32 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:40:32 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:40:32 WARNING: All illegal access operations will be denied in a future release 00:41:19 00:41:19 prepare: 00:41:19 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:41:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:41:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:41:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:41:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:41:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:19 00:41:19 pre-compile: 00:41:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:19 00:41:19 compile: 00:41:19 no-op 00:41:19 00:41:19 package: 00:41:19 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:41:20 00:41:20 install: 00:41:20 :: delivering :: omero#omero_client;working@10aac2d9aa47 :: 5.6.3-437-ef9fea1806-ice36 :: integration :: Tue Mar 26 00:40:31 UTC 2024 00:41:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:41:20 :: publishing :: omero#omero_client 00:41:20 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-ef9fea1806-ice36/omero_client-5.6.3-437-ef9fea1806-ice36.jar 00:41:20 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-ef9fea1806-ice36/omero_client-5.6.3-437-ef9fea1806-ice36.xml 00:41:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:41:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:41:20 00:41:20 retrieve: 00:41:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:41:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:20 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:41:20 00:41:20 dist: 00:41:20 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:41:20 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:41:20 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:41:20 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:41:20 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:41:20 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 00:41:20 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:41:21 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:41:21 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:41:21 00:41:21 copy-licenses: 00:41:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:41:21 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:41:21 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:41:21 00:41:21 copy-history: 00:41:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:41:21 00:41:21 copy-etc: 00:41:21 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:41:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:41:21 00:41:21 copy-sql: 00:41:21 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:41:48 00:41:48 copy-server: 00:41:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 00:41:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.17.100 won 00:41:48 00:41:48 copy-client: 00:41:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:41:51 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 00:41:51 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.17.100 won 00:41:51 00:41:51 update-version: 00:41:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:41:51 00:41:51 create-workdirs: 00:41:51 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:41:51 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:41:51 00:41:51 copy-luts: 00:41:51 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:41:51 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:41:51 00:41:51 test-compile: 00:41:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:41:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:41:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:41:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:41:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:41:52 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:41:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:41:52 00:41:52 testng-init: 00:41:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:41:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:56 00:41:55,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 00:41:56 00:41:55,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2d550996 - No custom configurators were discovered as a service. 00:41:56 00:41:55,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2d550996 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:41:56 00:41:55,775 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2d550996 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:41:56 00:41:55,775 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:41:56 00:41:55,776 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:41:56 00:41:55,776 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2d550996 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:41:56 00:41:55,776 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2d550996 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:41:56 00:41:55,778 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2d550996 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:41:56 00:41:55,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:41:56 00:41:55,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:41:56 00:41:55,780 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@682fec32 - Resource [logback.xml] occurs multiple times on the classpath. 00:41:56 00:41:55,780 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@682fec32 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:41:56 00:41:55,780 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@682fec32 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:41:56 00:41:56,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:41:56 00:41:56,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:41:56 00:41:56,043 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:41:56 00:41:56,045 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3ad32e52 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:41:56 00:41:56,045 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3ad32e52 - Please move "immediateFlush" property into the enclosing appender. 00:41:56 00:41:56,107 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3ad32e52 - Setting the "immediateFlush" property of the enclosing appender to true 00:41:56 00:41:56,108 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:41:56 00:41:56,108 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:41:56 00:41:56,108 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:41:56 00:41:56,108 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:41:56 00:41:56,108 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:41:56 00:41:56,108 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:41:56 00:41:56,110 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5f016147 - End of configuration. 00:41:56 00:41:56,112 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5a1dda88 - Registering current configuration as safe fallback point 00:41:56 00:41:56,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2d550996 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 334 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:41:56 00:41:56 lifecycle.test-compile: 00:41:56 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:41:56 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:41:57 warning: [options] bootstrap class path not set in conjunction with -source 8 00:41:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:59 import omero.grid.RawAccessRequest; 00:41:59 ^ 00:41:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:59 import omero.grid.RawAccessRequest; 00:41:59 ^ 00:41:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:59 import omero.grid.RawAccessRequest; 00:41:59 ^ 00:41:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:59 import omero.model.ImportJob; 00:41:59 ^ 00:41:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:41:59 import omero.model.ImportJobI; 00:41:59 ^ 00:42:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:42:00 IObject link = (IObject) linkClass.newInstance(); 00:42:00 ^ 00:42:00 where T is a type-variable: 00:42:00 T extends Object declared in class Class 00:42:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:42:01 T copy = (T) obj.getClass().newInstance(); 00:42:01 ^ 00:42:01 where T is a type-variable: 00:42:01 T extends Object declared in class Class 00:42:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:42:01 RawAccessRequest raw = new RawAccessRequest(); 00:42:01 ^ 00:42:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:42:01 RawAccessRequest raw = new RawAccessRequest(); 00:42:01 ^ 00:42:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:42:01 raw.repoUuid = legacy.root().getHash().getValue(); 00:42:01 ^ 00:42:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:42:01 raw.command = "rm"; 00:42:01 ^ 00:42:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:42:01 raw.args = Arrays.asList(path); 00:42:01 ^ 00:42:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:42:01 final IObject link = linkClass.newInstance(); 00:42:01 ^ 00:42:01 where T is a type-variable: 00:42:01 T extends Object declared in class Class 00:42:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:42:01 originalLink.setChild(annotationClass.newInstance()); 00:42:01 ^ 00:42:01 where T is a type-variable: 00:42:01 T extends Object declared in class Class 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:42:02 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:42:02 final RawAccessRequest request = new RawAccessRequest(); 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:42:02 final RawAccessRequest request = new RawAccessRequest(); 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:42:02 request.repoUuid = repo.root().getHash().getValue(); 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:42:02 request.command = "exists"; 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:42:02 request.args = Collections.singletonList(dirPath); 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:42:02 final RawAccessRequest request = new RawAccessRequest(); 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:42:02 final RawAccessRequest request = new RawAccessRequest(); 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:42:02 request.repoUuid = repo.root().getHash().getValue(); 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:42:02 request.command = "exists"; 00:42:02 ^ 00:42:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:42:02 request.args = Collections.singletonList(dirName); 00:42:02 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:42:03 final ImportJob importJob = new ImportJobI(); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:42:03 final ImportJob importJob = new ImportJobI(); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:42:03 importJob.setImageName(omero.rtypes.rstring(name)); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:42:03 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:42:03 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:42:03 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:42:03 final String savedName = sent.getImageName().getValue().toString(); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:42:03 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:42:03 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:42:03 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:42:03 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:42:03 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:42:03 RoiResult r = svc.findByImage(image.getId().getValue(), 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:42:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:42:03 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:42:03 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:42:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:42:03 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:42:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:42:03 table = svc.getTable(f.getId().getValue()); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:42:03 RoiResult r = svc.findByImage(image.getId().getValue(), 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:42:03 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:42:03 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:42:03 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:42:03 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:42:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:42:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:42:03 svc.getShapeStatsRestricted( 00:42:03 ^ 00:42:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:42:03 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:42:03 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:42:04 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:42:04 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:42:04 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:42:04 request.typesToIgnore = Collections.singletonList("Annotation"); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:42:04 request.typesToIgnore = Collections.singletonList("Annotation"); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:42:04 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:42:04 p2.setRelatedTo(p1); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:42:04 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:42:04 pixels1.setRelatedTo(pixels2); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:42:04 Pixels pixels = pixels1.getRelatedTo(); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:42:04 Assert.assertNull(pixels1.getRelatedTo()); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:42:04 pixels1.setRelatedTo(pixels2); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:42:04 Pixels pixels = pixels1.getRelatedTo(); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:42:04 Assert.assertNull(pixels1.getRelatedTo()); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:42:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:42:04 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:42:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:42:04 ^ 00:42:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:42:04 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:42:04 ^ 00:42:04 Note: Some input files use unchecked or unsafe operations. 00:42:04 Note: Recompile with -Xlint:unchecked for details. 00:42:04 88 warnings 00:42:04 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_5267021.tmp 00:42:04 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:42:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:42:04 :: delivering :: omero#OmeroJava-test;working@10aac2d9aa47 :: 5.6.3-437-ef9fea1806-ice36 :: integration :: Tue Mar 26 00:41:52 UTC 2024 00:42:04 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:42:04 :: publishing :: omero#OmeroJava-test 00:42:04 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-ef9fea1806-ice36.jar 00:42:05 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-ef9fea1806-ice36.xml 00:42:05 00:42:05 build-eclipse: 00:42:05 No sub-builds to iterate on 00:42:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:42:05 00:42:05 retrieve: 00:42:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:42:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:42:07 00:42:07 prepare: 00:42:07 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:42:09 00:42:09 release-clients: 00:42:09 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-437-ef9fea1806-ice36.zip 00:42:15 00:42:15 release-zip: 00:42:15 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-437-ef9fea1806-ice36.zip 00:42:27 00:42:27 BUILD SUCCESSFUL 00:42:27 Total time: 2 minutes 0 seconds 00:42:27 ++ '[' -d .git ']' 00:42:27 ++ python3 ./build.py release-src 00:42:27 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 00:42:27 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:42:28 00:42:28 release-src-git: 00:42:28 Releasing openmicroscopy-5.6.3-437-ef9fea1806-ice36 00:42:30 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-ef9fea1806-ice36.zip 00:42:30 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-ef9fea1806-ice36-base.zip 00:42:31 00:42:31 BUILD SUCCESSFUL 00:42:31 Total time: 3 seconds 00:42:31 ++ echo BUILD_NUMBER=12 00:42:31 ++ echo OMERO_BRANCH=merge_ci 00:42:31 ++ git_info 00:42:31 +++ git rev-parse HEAD 00:42:31 ++ HEAD=ef9fea180668d9465b30b9e50fbcc1fcf6ed4dc2 00:42:31 ++ git log --max-count=1 ef9fea180668d9465b30b9e50fbcc1fcf6ed4dc2 00:42:31 ++ env 00:42:31 ++ sort 00:42:31 Archiving artifacts 00:43:00 Finished: SUCCESS