10:30:45 Started by upstream project "Trigger" build number 147 10:30:45 originally caused by: 10:30:45 Started by user devspace 10:30:45 Running as SYSTEM 10:30:45 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 10:30:45 The recommended git tool is: NONE 10:30:45 No credentials specified 10:30:45 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 10:30:45 Fetching changes from the remote Git repository 10:30:45 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 10:30:45 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 10:30:45 > git --version # timeout=10 10:30:45 > git --version # 'git version 2.39.3' 10:30:45 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 10:30:49 > git rev-parse origin/merge_ci^{commit} # timeout=10 10:30:49 Checking out Revision 22ee6d815f3c2976ba4087d5a7989de1b6929e43 (origin/merge_ci) 10:30:49 > git config core.sparsecheckout # timeout=10 10:30:49 > git checkout -f 22ee6d815f3c2976ba4087d5a7989de1b6929e43 # timeout=10 10:30:50 Commit message: "Add version.properties to etc/omero.properties" 10:30:50 > git rev-list --no-walk a8e300e65badef6b58e46f2c42bef5d24cefef37 # timeout=10 10:30:50 Cleaning workspace 10:30:50 > git rev-parse --verify HEAD # timeout=10 10:30:50 Resetting working tree 10:30:50 > git reset --hard # timeout=10 10:30:51 > git clean -fdx # timeout=10 10:30:51 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 124 10:30:51 [OMERO-build] $ /bin/bash -xe /tmp/jenkins10299085188119801549.sh 10:30:51 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 10:30:51 + cd src 10:30:51 + export OMERO_BRANCH=merge_ci 10:30:51 + OMERO_BRANCH=merge_ci 10:30:51 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 10:30:51 + source /home/omero/settings.env 10:30:51 ++ OMERO_DB_HOST=pg 10:30:51 ++ OMERO_DB_USER=postgres 10:30:51 ++ OMERO_DB_PASS= 10:30:51 ++ OMERO_ROOT_PASS=omero 10:30:51 ++ OMERO_DATA_DIR=/OMERO 10:30:51 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:30:51 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 10:30:56 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 10:30:57 Collecting zeroc-ice==3.6.5 10:30:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 10:31:00 WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available. 10:31:00 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 10:31:00 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 10:31:00 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (71.1.0) 10:31:01 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4) 10:31:01 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 10:31:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 10:31:01 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 10:31:01 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 10:31:01 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 10:31:01 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 10:31:01 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 10:31:01 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 10:31:01 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 10:31:01 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 10:31:01 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 10:31:01 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 10:31:01 WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available. 10:31:01 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 10:31:01 + source docs/hudson/OMERO.sh 10:31:01 ++ set -e 10:31:01 ++ set -u 10:31:01 ++ set -x 10:31:01 ++ source docs/hudson/functions.sh 10:31:01 ++ echo Building merge_ci 10:31:01 Building merge_ci 10:31:01 ++ python3 ./build.py build-dev release-all 10:31:01 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 10:31:01 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:31:02 10:31:02 check-ivy: 10:31:02 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 10:31:02 Created dir: /home/omero/workspace/OMERO-build/src/target 10:31:02 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 10:31:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:31:04 10:31:04 build-scons: 10:31:04 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:31:04 No sub-builds to iterate on 10:31:04 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:31:04 10:31:04 buildlist: 10:31:04 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 10:31:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:31:05 10:31:05 clean: 10:31:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:31:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:31:05 10:31:05 python-clean: 10:31:05 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:31:05 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-484-22ee6d815f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:31:05 warnings.warn( 10:31:05 running clean 10:31:05 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 10:31:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:31:05 10:31:05 python-clean: 10:31:05 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:31:05 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-484-22ee6d815f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:31:05 warnings.warn( 10:31:05 running clean 10:31:05 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 10:31:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:31:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:31:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:31:05 10:31:05 python-clean: 10:31:05 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:31:05 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-484-22ee6d815f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:31:05 warnings.warn( 10:31:05 running clean 10:31:05 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 10:31:05 Deleting directory /home/omero/workspace/OMERO-build/src/target 10:31:06 10:31:06 build-scons: 10:31:06 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:31:06 10:31:06 build: 10:31:06 No sub-builds to iterate on 10:31:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:31:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:31:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:31:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:31:06 10:31:06 tools-init: 10:31:06 no-op 10:31:06 10:31:06 retrieve: 10:31:06 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 10:31:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:31:39 10:31:39 prepare: 10:31:39 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:31:39 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 10:31:39 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 10:31:39 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:31:39 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:31:39 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:31:39 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 10:31:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:31:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:31:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:31:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:31:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:31:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:31:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:31:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:31:39 10:31:39 pre-compile: 10:31:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:31:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:31:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:31:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:31:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:31:39 10:31:39 compile: 10:31:39 no-op 10:31:39 10:31:39 package: 10:31:39 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 10:31:39 10:31:39 install: 10:31:39 :: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-484-22ee6d815f-ice36 :: integration :: Tue Jul 23 10:31:06 UTC 2024 10:31:39 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 10:31:39 :: publishing :: omero#omero_client 10:31:39 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-484-22ee6d815f-ice36/omero_client-5.6.3-484-22ee6d815f-ice36.jar 10:31:39 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-484-22ee6d815f-ice36/omero_client-5.6.3-484-22ee6d815f-ice36.xml 10:31:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:31:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:31:40 10:31:40 retrieve: 10:31:40 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 10:31:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:31:40 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:31:40 10:31:40 dist: 10:31:40 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 10:31:40 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 10:31:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:31:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:31:42 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 10:31:42 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 10:31:42 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 10:31:42 Entering /home/omero/workspace/OMERO-build/src/components/tests... 10:31:42 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:31:42 10:31:42 copy-licenses: 10:31:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:31:42 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 10:31:42 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 10:31:42 10:31:42 copy-history: 10:31:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:31:42 10:31:42 copy-etc: 10:31:42 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 10:31:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 10:31:42 10:31:42 copy-sql: 10:31:42 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 10:31:53 10:31:53 copy-server: 10:31:53 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 10:31:53 10:31:53 copy-client: 10:31:53 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 10:31:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 10:31:55 10:31:55 update-version: 10:31:55 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 10:31:55 10:31:55 create-workdirs: 10:31:55 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 10:31:55 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 10:31:55 10:31:55 copy-luts: 10:31:55 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:31:55 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:31:55 10:31:55 test-compile: 10:31:55 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:31:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:31:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:31:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:31:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:31:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:31:55 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:31:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:31:56 10:31:56 testng-init: 10:31:56 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 10:31:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:32:04 10:32:04,449 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 10:32:04 10:32:04,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - No custom configurators were discovered as a service. 10:32:04 10:32:04,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 10:32:04 10:32:04,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 10:32:04 10:32:04,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 10:32:04 10:32:04,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 10:32:04 10:32:04,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 10:32:04 10:32:04,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 10:32:04 10:32:04,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 10:32:04 10:32:04,460 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 10:32:04 10:32:04,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:32:04 10:32:04,462 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2054183c - Resource [logback.xml] occurs multiple times on the classpath. 10:32:04 10:32:04,462 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2054183c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:32:04 10:32:04,462 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2054183c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 10:32:04 10:32:04,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 10:32:04 10:32:04,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 10:32:04 10:32:04,795 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 10:32:04 10:32:04,798 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@bdc7a96 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 10:32:04 10:32:04,798 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@bdc7a96 - Please move "immediateFlush" property into the enclosing appender. 10:32:04 10:32:04,884 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@bdc7a96 - Setting the "immediateFlush" property of the enclosing appender to true 10:32:04 10:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 10:32:04 10:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 10:32:04 10:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 10:32:04 10:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 10:32:04 10:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 10:32:04 10:32:04,885 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 10:32:04 10:32:04,887 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4be980 - End of configuration. 10:32:04 10:32:04,890 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@9b29cd4 - Registering current configuration as safe fallback point 10:32:04 10:32:04,890 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 430 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 10:32:04 10:32:04 lifecycle.test-compile: 10:32:04 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:32:04 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:32:05 warning: [options] bootstrap class path not set in conjunction with -source 8 10:32:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:32:07 import omero.grid.RawAccessRequest; 10:32:07 ^ 10:32:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:32:07 import omero.grid.RawAccessRequest; 10:32:07 ^ 10:32:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:32:07 import omero.grid.RawAccessRequest; 10:32:07 ^ 10:32:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 10:32:07 import omero.model.ImportJob; 10:32:07 ^ 10:32:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:32:07 import omero.model.ImportJobI; 10:32:07 ^ 10:32:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 10:32:09 IObject link = (IObject) linkClass.newInstance(); 10:32:09 ^ 10:32:09 where T is a type-variable: 10:32:09 T extends Object declared in class Class 10:32:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 10:32:09 T copy = (T) obj.getClass().newInstance(); 10:32:09 ^ 10:32:09 where T is a type-variable: 10:32:09 T extends Object declared in class Class 10:32:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:32:09 RawAccessRequest raw = new RawAccessRequest(); 10:32:09 ^ 10:32:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:32:09 RawAccessRequest raw = new RawAccessRequest(); 10:32:09 ^ 10:32:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:32:09 raw.repoUuid = legacy.root().getHash().getValue(); 10:32:09 ^ 10:32:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 10:32:09 raw.command = "rm"; 10:32:09 ^ 10:32:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 10:32:09 raw.args = Arrays.asList(path); 10:32:09 ^ 10:32:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 10:32:10 final IObject link = linkClass.newInstance(); 10:32:10 ^ 10:32:10 where T is a type-variable: 10:32:10 T extends Object declared in class Class 10:32:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 10:32:10 originalLink.setChild(annotationClass.newInstance()); 10:32:10 ^ 10:32:10 where T is a type-variable: 10:32:10 T extends Object declared in class Class 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:32:11 RoiResult r = svc.findByImage(id, new RoiOptions()); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:32:11 final RawAccessRequest request = new RawAccessRequest(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:32:11 final RawAccessRequest request = new RawAccessRequest(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:32:11 request.repoUuid = repo.root().getHash().getValue(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 10:32:11 request.command = "exists"; 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 10:32:11 request.args = Collections.singletonList(dirPath); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:32:11 final RawAccessRequest request = new RawAccessRequest(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:32:11 final RawAccessRequest request = new RawAccessRequest(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:32:11 request.repoUuid = repo.root().getHash().getValue(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 10:32:11 request.command = "exists"; 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 10:32:11 request.args = Collections.singletonList(dirName); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 10:32:11 final ImportJob importJob = new ImportJobI(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:32:11 final ImportJob importJob = new ImportJobI(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 10:32:11 importJob.setImageName(omero.rtypes.rstring(name)); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 10:32:11 importJob.setImageDescription(omero.rtypes.rstring(desc)); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:32:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:32:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:32:11 final String savedName = sent.getImageName().getValue().toString(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:32:11 final String savedDesc = sent.getImageDescription().getValue().toString(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:32:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:32:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:32:11 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 10:32:11 ^ 10:32:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:32:11 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 10:32:11 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:32:12 RoiResult r = svc.findByImage(image.getId().getValue(), 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:32:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:32:12 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:32:12 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:32:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 10:32:12 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:32:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 10:32:12 table = svc.getTable(f.getId().getValue()); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:32:12 RoiResult r = svc.findByImage(image.getId().getValue(), 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:32:12 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:32:12 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:32:12 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:32:12 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 10:32:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:32:12 svc.getShapeStatsRestricted( 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:32:12 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 10:32:12 ^ 10:32:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:32:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:32:12 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:32:13 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:32:13 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:32:13 request.typesToIgnore = Collections.singletonList("Annotation"); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:32:13 request.typesToIgnore = Collections.singletonList("Annotation"); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:32:13 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:32:13 p2.setRelatedTo(p1); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:32:13 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:32:13 pixels1.setRelatedTo(pixels2); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:32:13 Pixels pixels = pixels1.getRelatedTo(); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:32:13 Assert.assertNull(pixels1.getRelatedTo()); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:32:13 pixels1.setRelatedTo(pixels2); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:32:13 Pixels pixels = pixels1.getRelatedTo(); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:32:13 Assert.assertNull(pixels1.getRelatedTo()); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:32:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:32:13 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:32:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:32:13 ^ 10:32:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:32:13 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:32:13 ^ 10:32:13 Note: Some input files use unchecked or unsafe operations. 10:32:13 Note: Recompile with -Xlint:unchecked for details. 10:32:13 88 warnings 10:32:13 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_94380732.tmp 10:32:13 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 10:32:13 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:32:13 :: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-484-22ee6d815f-ice36 :: integration :: Tue Jul 23 10:31:55 UTC 2024 10:32:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 10:32:13 :: publishing :: omero#OmeroJava-test 10:32:13 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-484-22ee6d815f-ice36.jar 10:32:13 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-484-22ee6d815f-ice36.xml 10:32:13 10:32:13 build-eclipse: 10:32:13 No sub-builds to iterate on 10:32:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:32:13 10:32:13 retrieve: 10:32:13 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 10:32:13 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:32:17 10:32:17 prepare: 10:32:17 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:32:19 10:32:19 release-clients: 10:32:19 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-484-22ee6d815f-ice36.zip 10:32:25 10:32:25 release-zip: 10:32:25 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-484-22ee6d815f-ice36.zip 10:32:38 10:32:38 BUILD SUCCESSFUL 10:32:38 Total time: 1 minute 36 seconds 10:32:38 ++ '[' -d .git ']' 10:32:38 ++ python3 ./build.py release-src 10:32:38 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 10:32:38 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:32:39 10:32:39 release-src-git: 10:32:39 Releasing openmicroscopy-5.6.3-484-22ee6d815f-ice36 10:32:41 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-484-22ee6d815f-ice36.zip 10:32:41 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-484-22ee6d815f-ice36-base.zip 10:32:42 10:32:42 BUILD SUCCESSFUL 10:32:42 Total time: 3 seconds 10:32:42 ++ echo BUILD_NUMBER=125 10:32:42 ++ echo OMERO_BRANCH=merge_ci 10:32:42 ++ git_info 10:32:42 +++ git rev-parse HEAD 10:32:42 ++ HEAD=22ee6d815f3c2976ba4087d5a7989de1b6929e43 10:32:42 ++ git log --max-count=1 22ee6d815f3c2976ba4087d5a7989de1b6929e43 10:32:42 ++ env 10:32:42 ++ sort 10:32:42 Archiving artifacts 10:33:13 Finished: SUCCESS