09:58:00 Started by upstream project "Trigger" build number 206 09:58:00 originally caused by: 09:58:00 Started by user devspace 09:58:00 Running as SYSTEM 09:58:00 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 09:58:00 The recommended git tool is: NONE 09:58:00 No credentials specified 09:58:00 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 09:58:00 Fetching changes from the remote Git repository 09:58:00 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 09:58:00 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 09:58:00 > git --version # timeout=10 09:58:00 > git --version # 'git version 2.39.3' 09:58:00 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 09:58:06 > git rev-parse origin/merge_ci^{commit} # timeout=10 09:58:06 Checking out Revision fd852ee75da2def9e9392c6736957f5a53488ed2 (origin/merge_ci) 09:58:06 > git config core.sparsecheckout # timeout=10 09:58:06 > git checkout -f fd852ee75da2def9e9392c6736957f5a53488ed2 # timeout=10 09:58:07 Commit message: "Add version.properties to etc/omero.properties" 09:58:07 > git rev-list --no-walk 06f46812e76011a37081e314d4c257ce949680c3 # timeout=10 09:58:07 Cleaning workspace 09:58:07 > git rev-parse --verify HEAD # timeout=10 09:58:07 Resetting working tree 09:58:07 > git reset --hard # timeout=10 09:58:07 > git clean -fdx # timeout=10 09:58:07 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 169 09:58:07 [OMERO-build] $ /bin/bash -xe /tmp/jenkins10844511523199538280.sh 09:58:07 + mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz . 09:58:07 + cd src 09:58:07 + export OMERO_BRANCH=merge_ci 09:58:07 + OMERO_BRANCH=merge_ci 09:58:07 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 09:58:07 + source /home/omero/settings.env 09:58:07 ++ OMERO_DB_HOST=pg 09:58:07 ++ OMERO_DB_USER=postgres 09:58:07 ++ OMERO_DB_PASS= 09:58:07 ++ OMERO_ROOT_PASS=omero 09:58:07 ++ OMERO_DATA_DIR=/OMERO 09:58:07 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 09:58:07 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 09:58:11 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 09:58:13 Collecting zeroc-ice==3.6.5 09:58:14 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 09:58:16 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 09:58:16 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 09:58:16 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 09:58:16 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (74.1.2) 09:58:17 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4) 09:58:17 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 09:58:17 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 09:58:17 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 09:58:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 09:58:17 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 09:58:17 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 09:58:17 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 09:58:17 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 09:58:17 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 09:58:17 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 09:58:17 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 09:58:17 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 09:58:17 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 09:58:17 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 09:58:17 + source docs/hudson/OMERO.sh 09:58:17 ++ set -e 09:58:17 ++ set -u 09:58:17 ++ set -x 09:58:17 ++ source docs/hudson/functions.sh 09:58:17 ++ echo Building merge_ci 09:58:17 Building merge_ci 09:58:17 ++ python3 ./build.py build-dev release-all 09:58:17 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 09:58:17 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:58:18 09:58:18 check-ivy: 09:58:18 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 09:58:18 Created dir: /home/omero/workspace/OMERO-build/src/target 09:58:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:58:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:58:19 09:58:19 build-scons: 09:58:19 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:58:19 No sub-builds to iterate on 09:58:19 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:58:20 09:58:20 buildlist: 09:58:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:58:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:58:20 09:58:20 clean: 09:58:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:58:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:58:20 09:58:20 python-clean: 09:58:20 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:58:20 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-504-fd852ee75d-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:58:20 warnings.warn( 09:58:20 running clean 09:58:20 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 09:58:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:58:21 09:58:21 python-clean: 09:58:21 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:58:21 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-504-fd852ee75d-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:58:21 warnings.warn( 09:58:21 running clean 09:58:21 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 09:58:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:58:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:58:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:58:21 09:58:21 python-clean: 09:58:21 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:58:21 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-504-fd852ee75d-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:58:21 warnings.warn( 09:58:21 running clean 09:58:21 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 09:58:21 Deleting directory /home/omero/workspace/OMERO-build/src/target 09:58:21 09:58:21 build-scons: 09:58:21 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:58:21 09:58:21 build: 09:58:21 No sub-builds to iterate on 09:58:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:58:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:58:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:58:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:58:21 09:58:21 tools-init: 09:58:21 no-op 09:58:22 09:58:22 retrieve: 09:58:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:58:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:58:22 WARNING: An illegal reflective access operation has occurred 09:58:22 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 09:58:22 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 09:58:22 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 09:58:22 WARNING: All illegal access operations will be denied in a future release 09:58:51 09:58:51 prepare: 09:58:51 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:58:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 09:58:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 09:58:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:58:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 09:58:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:51 09:58:51 pre-compile: 09:58:51 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:51 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:52 09:58:52 compile: 09:58:52 no-op 09:58:52 09:58:52 package: 09:58:52 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 09:58:52 09:58:52 install: 09:58:52 :: delivering :: omero#omero_client;working@8b1804e913d2 :: 5.6.3-504-fd852ee75d-ice36 :: integration :: Wed Sep 11 09:58:21 UTC 2024 09:58:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 09:58:52 :: publishing :: omero#omero_client 09:58:52 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-504-fd852ee75d-ice36/omero_client-5.6.3-504-fd852ee75d-ice36.jar 09:58:52 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-504-fd852ee75d-ice36/omero_client-5.6.3-504-fd852ee75d-ice36.xml 09:58:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:58:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:58:53 09:58:53 retrieve: 09:58:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:58:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:58:53 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:58:53 09:58:53 dist: 09:58:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 09:58:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 09:58:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:58:53 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:58:53 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 09:58:53 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 09:58:53 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 09:58:53 Entering /home/omero/workspace/OMERO-build/src/components/tests... 09:58:53 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:58:53 09:58:53 copy-licenses: 09:58:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:58:53 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 09:58:53 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 09:58:53 09:58:53 copy-history: 09:58:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:58:53 09:58:53 copy-etc: 09:58:53 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 09:58:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 09:58:53 09:58:53 copy-sql: 09:58:53 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 09:59:00 09:59:00 copy-server: 09:59:00 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 09:59:00 09:59:00 copy-client: 09:59:00 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 09:59:01 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 09:59:01 09:59:01 update-version: 09:59:01 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 09:59:01 09:59:01 create-workdirs: 09:59:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 09:59:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 09:59:01 09:59:01 copy-luts: 09:59:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:59:01 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:59:01 09:59:01 test-compile: 09:59:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:59:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:59:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:59:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:59:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:59:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:59:02 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:59:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:59:02 09:59:02 testng-init: 09:59:02 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:59:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:59:06 09:59:05,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 09:59:06 09:59:06,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - No custom configurators were discovered as a service. 09:59:06 09:59:06,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 09:59:06 09:59:06,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 09:59:06 09:59:06,004 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 09:59:06 09:59:06,004 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 09:59:06 09:59:06,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 09:59:06 09:59:06,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 09:59:06 09:59:06,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 09:59:06 09:59:06,007 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 09:59:06 09:59:06,008 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:59:06 09:59:06,008 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e31b89 - Resource [logback.xml] occurs multiple times on the classpath. 09:59:06 09:59:06,008 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e31b89 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:59:06 09:59:06,008 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e31b89 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 09:59:06 09:59:06,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 09:59:06 09:59:06,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 09:59:06 09:59:06,258 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 09:59:06 09:59:06,260 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42141c59 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 09:59:06 09:59:06,260 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42141c59 - Please move "immediateFlush" property into the enclosing appender. 09:59:06 09:59:06,324 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42141c59 - Setting the "immediateFlush" property of the enclosing appender to true 09:59:06 09:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 09:59:06 09:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 09:59:06 09:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 09:59:06 09:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 09:59:06 09:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 09:59:06 09:59:06,325 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 09:59:06 09:59:06,326 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@49854d93 - End of configuration. 09:59:06 09:59:06,329 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@29d7d117 - Registering current configuration as safe fallback point 09:59:06 09:59:06,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 322 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 09:59:06 09:59:06 lifecycle.test-compile: 09:59:06 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:59:06 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:59:07 warning: [options] bootstrap class path not set in conjunction with -source 8 09:59:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:59:08 import omero.grid.RawAccessRequest; 09:59:08 ^ 09:59:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:59:08 import omero.grid.RawAccessRequest; 09:59:08 ^ 09:59:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:59:08 import omero.grid.RawAccessRequest; 09:59:08 ^ 09:59:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 09:59:08 import omero.model.ImportJob; 09:59:08 ^ 09:59:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:59:08 import omero.model.ImportJobI; 09:59:08 ^ 09:59:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 09:59:09 IObject link = (IObject) linkClass.newInstance(); 09:59:09 ^ 09:59:09 where T is a type-variable: 09:59:09 T extends Object declared in class Class 09:59:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 09:59:09 T copy = (T) obj.getClass().newInstance(); 09:59:09 ^ 09:59:09 where T is a type-variable: 09:59:09 T extends Object declared in class Class 09:59:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:59:09 RawAccessRequest raw = new RawAccessRequest(); 09:59:09 ^ 09:59:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:59:09 RawAccessRequest raw = new RawAccessRequest(); 09:59:09 ^ 09:59:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:59:09 raw.repoUuid = legacy.root().getHash().getValue(); 09:59:09 ^ 09:59:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 09:59:09 raw.command = "rm"; 09:59:09 ^ 09:59:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 09:59:09 raw.args = Arrays.asList(path); 09:59:09 ^ 09:59:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 09:59:10 final IObject link = linkClass.newInstance(); 09:59:10 ^ 09:59:10 where T is a type-variable: 09:59:10 T extends Object declared in class Class 09:59:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 09:59:10 originalLink.setChild(annotationClass.newInstance()); 09:59:10 ^ 09:59:10 where T is a type-variable: 09:59:10 T extends Object declared in class Class 09:59:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:59:10 RoiResult r = svc.findByImage(id, new RoiOptions()); 09:59:10 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:59:11 final RawAccessRequest request = new RawAccessRequest(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:59:11 final RawAccessRequest request = new RawAccessRequest(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:59:11 request.repoUuid = repo.root().getHash().getValue(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 09:59:11 request.command = "exists"; 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 09:59:11 request.args = Collections.singletonList(dirPath); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:59:11 final RawAccessRequest request = new RawAccessRequest(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:59:11 final RawAccessRequest request = new RawAccessRequest(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:59:11 request.repoUuid = repo.root().getHash().getValue(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 09:59:11 request.command = "exists"; 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 09:59:11 request.args = Collections.singletonList(dirName); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 09:59:11 final ImportJob importJob = new ImportJobI(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:59:11 final ImportJob importJob = new ImportJobI(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 09:59:11 importJob.setImageName(omero.rtypes.rstring(name)); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 09:59:11 importJob.setImageDescription(omero.rtypes.rstring(desc)); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:59:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:59:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:59:11 final String savedName = sent.getImageName().getValue().toString(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:59:11 final String savedDesc = sent.getImageDescription().getValue().toString(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:59:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:59:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:59:11 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:59:11 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:59:11 RoiResult r = svc.findByImage(image.getId().getValue(), 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:59:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:59:11 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:59:11 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:59:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 09:59:11 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:59:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 09:59:11 table = svc.getTable(f.getId().getValue()); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:59:11 RoiResult r = svc.findByImage(image.getId().getValue(), 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:59:11 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:59:11 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:59:11 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:59:11 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 09:59:11 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:59:11 svc.getShapeStatsRestricted( 09:59:11 ^ 09:59:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:59:11 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 09:59:11 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:59:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:59:12 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:59:12 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:59:12 request.typesToIgnore = Collections.singletonList("Annotation"); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:59:12 request.typesToIgnore = Collections.singletonList("Annotation"); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:59:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:59:12 p2.setRelatedTo(p1); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:59:12 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:59:12 pixels1.setRelatedTo(pixels2); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:59:12 Pixels pixels = pixels1.getRelatedTo(); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:59:12 Assert.assertNull(pixels1.getRelatedTo()); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:59:12 pixels1.setRelatedTo(pixels2); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:59:12 Pixels pixels = pixels1.getRelatedTo(); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:59:12 Assert.assertNull(pixels1.getRelatedTo()); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:59:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:59:12 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:59:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:59:12 ^ 09:59:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:59:12 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:59:12 ^ 09:59:12 Note: Some input files use unchecked or unsafe operations. 09:59:12 Note: Recompile with -Xlint:unchecked for details. 09:59:12 88 warnings 09:59:12 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_340631804.tmp 09:59:12 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 09:59:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:59:12 :: delivering :: omero#OmeroJava-test;working@8b1804e913d2 :: 5.6.3-504-fd852ee75d-ice36 :: integration :: Wed Sep 11 09:59:02 UTC 2024 09:59:12 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 09:59:12 :: publishing :: omero#OmeroJava-test 09:59:12 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-504-fd852ee75d-ice36.jar 09:59:12 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-504-fd852ee75d-ice36.xml 09:59:12 09:59:12 build-eclipse: 09:59:12 No sub-builds to iterate on 09:59:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:59:13 09:59:13 retrieve: 09:59:13 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:59:13 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:59:17 09:59:17 prepare: 09:59:17 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:59:20 09:59:20 release-clients: 09:59:20 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-504-fd852ee75d-ice36.zip 09:59:26 09:59:26 release-zip: 09:59:26 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-504-fd852ee75d-ice36.zip 09:59:38 09:59:38 BUILD SUCCESSFUL 09:59:38 Total time: 1 minute 21 seconds 09:59:38 ++ '[' -d .git ']' 09:59:38 ++ python3 ./build.py release-src 09:59:38 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 09:59:38 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:59:39 09:59:39 release-src-git: 09:59:39 Releasing openmicroscopy-5.6.3-504-fd852ee75d-ice36 09:59:40 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-504-fd852ee75d-ice36.zip 09:59:40 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-504-fd852ee75d-ice36-base.zip 09:59:42 09:59:42 BUILD SUCCESSFUL 09:59:42 Total time: 3 seconds 09:59:42 ++ echo BUILD_NUMBER=171 09:59:42 ++ echo OMERO_BRANCH=merge_ci 09:59:42 ++ git_info 09:59:42 +++ git rev-parse HEAD 09:59:42 ++ HEAD=fd852ee75da2def9e9392c6736957f5a53488ed2 09:59:42 ++ git log --max-count=1 fd852ee75da2def9e9392c6736957f5a53488ed2 09:59:42 ++ env 09:59:42 ++ sort 09:59:42 Archiving artifacts 10:00:11 Finished: SUCCESS