07:59:44 Started by upstream project "Trigger" build number 241 07:59:44 originally caused by: 07:59:44 Started by user devspace 07:59:44 Running as SYSTEM 07:59:44 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 07:59:44 The recommended git tool is: NONE 07:59:44 No credentials specified 07:59:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 07:59:44 Fetching changes from the remote Git repository 07:59:44 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 07:59:44 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 07:59:44 > git --version # timeout=10 07:59:44 > git --version # 'git version 2.43.5' 07:59:44 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 07:59:48 > git rev-parse origin/merge_ci^{commit} # timeout=10 07:59:48 Checking out Revision 77dcd6034a45259ab645333bfbaaaa502230a60e (origin/merge_ci) 07:59:48 > git config core.sparsecheckout # timeout=10 07:59:48 > git checkout -f 77dcd6034a45259ab645333bfbaaaa502230a60e # timeout=10 07:59:49 Commit message: "Add version.properties to etc/omero.properties" 07:59:49 > git rev-list --no-walk 28b8569e148c73923c986f80a1d92098b6bea047 # timeout=10 07:59:49 Cleaning workspace 07:59:49 > git rev-parse --verify HEAD # timeout=10 07:59:49 Resetting working tree 07:59:49 > git reset --hard # timeout=10 07:59:49 > git clean -fdx # timeout=10 07:59:49 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 195 07:59:49 [OMERO-build] $ /bin/bash -xe /tmp/jenkins5263381604678143350.sh 07:59:49 + mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz . 07:59:49 + cd src 07:59:49 + export OMERO_BRANCH=merge_ci 07:59:49 + OMERO_BRANCH=merge_ci 07:59:49 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 07:59:49 + source /home/omero/settings.env 07:59:49 ++ OMERO_DB_HOST=pg 07:59:49 ++ OMERO_DB_USER=postgres 07:59:49 ++ OMERO_DB_PASS= 07:59:49 ++ OMERO_ROOT_PASS=omero 07:59:49 ++ OMERO_DATA_DIR=/OMERO 07:59:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 07:59:49 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 07:59:51 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 07:59:52 Collecting zeroc-ice==3.6.5 07:59:53 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 07:59:56 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 07:59:56 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 07:59:56 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 07:59:56 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.1.0) 07:59:57 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5) 07:59:57 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 07:59:57 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 07:59:57 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 07:59:57 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 07:59:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 07:59:57 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 07:59:57 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 07:59:57 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 07:59:57 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 07:59:57 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 07:59:57 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 07:59:57 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 07:59:57 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 07:59:57 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 07:59:57 + source docs/hudson/OMERO.sh 07:59:57 ++ set -e 07:59:57 ++ set -u 07:59:57 ++ set -x 07:59:57 ++ source docs/hudson/functions.sh 07:59:57 ++ echo Building merge_ci 07:59:57 Building merge_ci 07:59:57 ++ python3 ./build.py build-dev release-all 07:59:57 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 07:59:57 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 07:59:58 07:59:58 check-ivy: 07:59:58 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 07:59:58 Created dir: /home/omero/workspace/OMERO-build/src/target 07:59:58 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:59:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:59:59 07:59:59 build-scons: 07:59:59 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 07:59:59 No sub-builds to iterate on 07:59:59 Entering /home/omero/workspace/OMERO-build/src/components/tools... 07:59:59 07:59:59 buildlist: 07:59:59 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:59:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:59:59 07:59:59 clean: 07:59:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:59:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:00:00 08:00:00 python-clean: 08:00:00 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:00:00 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-77dcd6034a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:00:00 warnings.warn( 08:00:00 running clean 08:00:00 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 08:00:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:00:00 08:00:00 python-clean: 08:00:00 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:00:00 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-77dcd6034a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:00:00 warnings.warn( 08:00:00 running clean 08:00:00 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 08:00:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:00:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:00 08:00:00 python-clean: 08:00:00 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:00:00 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-77dcd6034a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:00:00 warnings.warn( 08:00:00 running clean 08:00:00 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 08:00:00 Deleting directory /home/omero/workspace/OMERO-build/src/target 08:00:00 08:00:00 build-scons: 08:00:00 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:00:00 08:00:00 build: 08:00:00 No sub-builds to iterate on 08:00:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:00:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:00:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:00:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:00:00 08:00:00 tools-init: 08:00:00 no-op 08:00:01 08:00:01 retrieve: 08:00:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:00:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:01 WARNING: An illegal reflective access operation has occurred 08:00:01 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 08:00:01 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 08:00:01 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 08:00:01 WARNING: All illegal access operations will be denied in a future release 08:00:31 08:00:31 prepare: 08:00:31 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 08:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 08:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 08:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:31 08:00:31 pre-compile: 08:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:31 08:00:31 compile: 08:00:31 no-op 08:00:31 08:00:31 package: 08:00:31 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 08:00:32 08:00:32 install: 08:00:32 :: delivering :: omero#omero_client;working@db6de8e9ca4d :: 5.6.3-513-77dcd6034a-ice36 :: integration :: Tue Oct 08 08:00:00 UTC 2024 08:00:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 08:00:32 :: publishing :: omero#omero_client 08:00:32 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-77dcd6034a-ice36/omero_client-5.6.3-513-77dcd6034a-ice36.jar 08:00:32 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-77dcd6034a-ice36/omero_client-5.6.3-513-77dcd6034a-ice36.xml 08:00:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:32 08:00:32 retrieve: 08:00:32 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:00:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:33 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:00:33 08:00:33 dist: 08:00:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 08:00:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:00:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:00:33 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 08:00:33 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 08:00:33 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 08:00:33 Entering /home/omero/workspace/OMERO-build/src/components/tests... 08:00:33 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:00:33 08:00:33 copy-licenses: 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:00:33 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 08:00:33 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 08:00:33 08:00:33 copy-history: 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:00:33 08:00:33 copy-etc: 08:00:33 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 08:00:33 08:00:33 copy-sql: 08:00:33 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 08:00:40 08:00:40 copy-server: 08:00:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 08:00:40 08:00:40 copy-client: 08:00:40 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 08:00:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 08:00:41 08:00:41 update-version: 08:00:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 08:00:41 08:00:41 create-workdirs: 08:00:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 08:00:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 08:00:41 08:00:41 copy-luts: 08:00:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:00:41 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:00:41 08:00:41 test-compile: 08:00:41 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:00:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:00:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:00:42 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:00:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:00:42 08:00:42 testng-init: 08:00:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:00:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:45 08:00:45,503 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 08:00:45 08:00:45,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - No custom configurators were discovered as a service. 08:00:45 08:00:45,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 08:00:45 08:00:45,511 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 08:00:45 08:00:45,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 08:00:45 08:00:45,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 08:00:45 08:00:45,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 08:00:45 08:00:45,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 08:00:45 08:00:45,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 08:00:45 08:00:45,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 08:00:45 08:00:45,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:00:45 08:00:45,516 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@151cbba4 - Resource [logback.xml] occurs multiple times on the classpath. 08:00:45 08:00:45,516 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@151cbba4 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:00:45 08:00:45,516 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@151cbba4 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 08:00:45 08:00:45,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 08:00:45 08:00:45,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 08:00:45 08:00:45,789 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 08:00:45 08:00:45,790 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3729cdaf - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 08:00:45 08:00:45,790 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3729cdaf - Please move "immediateFlush" property into the enclosing appender. 08:00:45 08:00:45,876 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3729cdaf - Setting the "immediateFlush" property of the enclosing appender to true 08:00:45 08:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 08:00:45 08:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 08:00:45 08:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 08:00:45 08:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 08:00:45 08:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 08:00:45 08:00:45,877 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 08:00:45 08:00:45,879 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@75a45ce - End of configuration. 08:00:45 08:00:45,881 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@35bd146b - Registering current configuration as safe fallback point 08:00:45 08:00:45,881 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 367 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 08:00:45 08:00:45 lifecycle.test-compile: 08:00:45 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:00:45 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:00:46 warning: [options] bootstrap class path not set in conjunction with -source 8 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:47 import omero.grid.RawAccessRequest; 08:00:47 ^ 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:47 import omero.grid.RawAccessRequest; 08:00:47 ^ 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:47 import omero.grid.RawAccessRequest; 08:00:47 ^ 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:47 import omero.model.ImportJob; 08:00:47 ^ 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:00:47 import omero.model.ImportJobI; 08:00:47 ^ 08:00:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 08:00:48 IObject link = (IObject) linkClass.newInstance(); 08:00:48 ^ 08:00:48 where T is a type-variable: 08:00:48 T extends Object declared in class Class 08:00:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 08:00:48 T copy = (T) obj.getClass().newInstance(); 08:00:48 ^ 08:00:48 where T is a type-variable: 08:00:48 T extends Object declared in class Class 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:49 RawAccessRequest raw = new RawAccessRequest(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:49 RawAccessRequest raw = new RawAccessRequest(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:00:49 raw.repoUuid = legacy.root().getHash().getValue(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 08:00:49 raw.command = "rm"; 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 08:00:49 raw.args = Arrays.asList(path); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 08:00:49 final IObject link = linkClass.newInstance(); 08:00:49 ^ 08:00:49 where T is a type-variable: 08:00:49 T extends Object declared in class Class 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 08:00:49 originalLink.setChild(annotationClass.newInstance()); 08:00:49 ^ 08:00:49 where T is a type-variable: 08:00:49 T extends Object declared in class Class 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:00:49 RoiResult r = svc.findByImage(id, new RoiOptions()); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:49 final RawAccessRequest request = new RawAccessRequest(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:49 final RawAccessRequest request = new RawAccessRequest(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:00:49 request.repoUuid = repo.root().getHash().getValue(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 08:00:49 request.command = "exists"; 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 08:00:49 request.args = Collections.singletonList(dirPath); 08:00:49 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:50 final RawAccessRequest request = new RawAccessRequest(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:50 final RawAccessRequest request = new RawAccessRequest(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:00:50 request.repoUuid = repo.root().getHash().getValue(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 08:00:50 request.command = "exists"; 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 08:00:50 request.args = Collections.singletonList(dirName); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:50 final ImportJob importJob = new ImportJobI(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:00:50 final ImportJob importJob = new ImportJobI(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 08:00:50 importJob.setImageName(omero.rtypes.rstring(name)); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 08:00:50 importJob.setImageDescription(omero.rtypes.rstring(desc)); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:50 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:50 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:00:50 final String savedName = sent.getImageName().getValue().toString(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:00:50 final String savedDesc = sent.getImageDescription().getValue().toString(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:50 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:50 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:00:50 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:00:50 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 RoiResult r = svc.findByImage(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 08:00:50 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 08:00:50 table = svc.getTable(f.getId().getValue()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 RoiResult r = svc.findByImage(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:00:50 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:00:50 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 08:00:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:00:50 svc.getShapeStatsRestricted( 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:00:50 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:00:50 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:00:51 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:00:51 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:00:51 request.typesToIgnore = Collections.singletonList("Annotation"); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:00:51 request.typesToIgnore = Collections.singletonList("Annotation"); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:51 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:51 p2.setRelatedTo(p1); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:51 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:51 pixels1.setRelatedTo(pixels2); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:51 Pixels pixels = pixels1.getRelatedTo(); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:51 Assert.assertNull(pixels1.getRelatedTo()); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:51 pixels1.setRelatedTo(pixels2); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:51 Pixels pixels = pixels1.getRelatedTo(); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:51 Assert.assertNull(pixels1.getRelatedTo()); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:51 ^ 08:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:00:51 ^ 08:00:51 Note: Some input files use unchecked or unsafe operations. 08:00:51 Note: Recompile with -Xlint:unchecked for details. 08:00:51 88 warnings 08:00:51 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1961137680.tmp 08:00:51 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 08:00:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:51 :: delivering :: omero#OmeroJava-test;working@db6de8e9ca4d :: 5.6.3-513-77dcd6034a-ice36 :: integration :: Tue Oct 08 08:00:42 UTC 2024 08:00:51 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 08:00:51 :: publishing :: omero#OmeroJava-test 08:00:51 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-77dcd6034a-ice36.jar 08:00:51 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-77dcd6034a-ice36.xml 08:00:51 08:00:51 build-eclipse: 08:00:51 No sub-builds to iterate on 08:00:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:00:51 08:00:51 retrieve: 08:00:51 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:00:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:54 08:00:54 prepare: 08:00:54 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:00:55 08:00:55 release-clients: 08:00:55 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-513-77dcd6034a-ice36.zip 08:01:01 08:01:01 release-zip: 08:01:01 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-513-77dcd6034a-ice36.zip 08:01:13 08:01:13 BUILD SUCCESSFUL 08:01:13 Total time: 1 minute 15 seconds 08:01:13 ++ '[' -d .git ']' 08:01:13 ++ python3 ./build.py release-src 08:01:13 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 08:01:13 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:01:14 08:01:14 release-src-git: 08:01:14 Releasing openmicroscopy-5.6.3-513-77dcd6034a-ice36 08:01:15 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-77dcd6034a-ice36.zip 08:01:15 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-77dcd6034a-ice36-base.zip 08:01:17 08:01:17 BUILD SUCCESSFUL 08:01:17 Total time: 3 seconds 08:01:17 ++ echo BUILD_NUMBER=198 08:01:17 ++ echo OMERO_BRANCH=merge_ci 08:01:17 ++ git_info 08:01:17 +++ git rev-parse HEAD 08:01:17 ++ HEAD=77dcd6034a45259ab645333bfbaaaa502230a60e 08:01:17 ++ git log --max-count=1 77dcd6034a45259ab645333bfbaaaa502230a60e 08:01:17 ++ env 08:01:17 ++ sort 08:01:17 Archiving artifacts 08:01:45 Finished: SUCCESS