06:29:27 Started by upstream project "Trigger" build number 35 06:29:27 originally caused by: 06:29:27 Started by user devspace 06:29:27 Running as SYSTEM 06:29:27 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 06:29:27 The recommended git tool is: NONE 06:29:27 No credentials specified 06:29:27 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 06:29:27 Fetching changes from the remote Git repository 06:29:27 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 06:29:27 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 06:29:27 > git --version # timeout=10 06:29:27 > git --version # 'git version 2.39.3' 06:29:27 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 06:29:32 > git rev-parse origin/merge_ci^{commit} # timeout=10 06:29:32 Checking out Revision 73ca23df5ecd2d0e40a68ab9304894c9b6df91ad (origin/merge_ci) 06:29:32 > git config core.sparsecheckout # timeout=10 06:29:32 > git checkout -f 73ca23df5ecd2d0e40a68ab9304894c9b6df91ad # timeout=10 06:29:34 Commit message: "Add version.properties to etc/omero.properties" 06:29:34 > git rev-list --no-walk 66bbda8c656299810a2c4cec2d9ba3795c0fc0b7 # timeout=10 06:29:34 Cleaning workspace 06:29:34 > git rev-parse --verify HEAD # timeout=10 06:29:34 Resetting working tree 06:29:34 > git reset --hard # timeout=10 06:29:34 > git clean -fdx # timeout=10 06:29:38 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 30 06:29:38 [OMERO-build] $ /bin/bash -xe /tmp/jenkins461552625819525945.sh 06:29:38 + mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz . 06:29:38 + cd src 06:29:38 + export OMERO_BRANCH=merge_ci 06:29:38 + OMERO_BRANCH=merge_ci 06:29:38 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 06:29:38 + source /home/omero/settings.env 06:29:38 ++ OMERO_DB_HOST=pg 06:29:38 ++ OMERO_DB_USER=postgres 06:29:38 ++ OMERO_DB_PASS= 06:29:38 ++ OMERO_ROOT_PASS=omero 06:29:38 ++ OMERO_DATA_DIR=/OMERO 06:29:38 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 06:29:38 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 06:29:41 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 06:29:43 Collecting zeroc-ice==3.6.5 06:29:44 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 06:29:46 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 06:29:46 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 06:29:46 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 06:29:47 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0) 06:29:47 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1) 06:29:48 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 06:29:48 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 06:29:48 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 06:29:48 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 06:29:48 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 06:29:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 06:29:48 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 06:29:48 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 06:29:48 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 06:29:48 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 06:29:48 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 06:29:48 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 06:29:48 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 06:29:48 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 06:29:48 + source docs/hudson/OMERO.sh 06:29:48 ++ set -e 06:29:48 ++ set -u 06:29:48 ++ set -x 06:29:48 ++ source docs/hudson/functions.sh 06:29:48 ++ echo Building merge_ci 06:29:48 Building merge_ci 06:29:48 ++ python3 ./build.py build-dev release-all 06:29:48 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 06:29:49 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 06:29:50 06:29:50 check-ivy: 06:29:50 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 06:29:50 Created dir: /home/omero/workspace/OMERO-build/src/target 06:29:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:29:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:29:51 06:29:51 build-scons: 06:29:51 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 06:29:51 No sub-builds to iterate on 06:29:51 Entering /home/omero/workspace/OMERO-build/src/components/tools... 06:29:51 06:29:51 buildlist: 06:29:51 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:29:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:29:52 06:29:52 clean: 06:29:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:29:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:29:52 06:29:52 python-clean: 06:29:52 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 06:29:52 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-452-73ca23df5e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 06:29:52 warnings.warn( 06:29:52 running clean 06:29:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 06:29:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 06:29:52 06:29:52 python-clean: 06:29:52 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 06:29:52 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-452-73ca23df5e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 06:29:52 warnings.warn( 06:29:52 running clean 06:29:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 06:29:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 06:29:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:29:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:29:52 06:29:52 python-clean: 06:29:52 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 06:29:52 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-452-73ca23df5e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 06:29:52 warnings.warn( 06:29:52 running clean 06:29:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 06:29:52 Deleting directory /home/omero/workspace/OMERO-build/src/target 06:29:53 06:29:53 build-scons: 06:29:53 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 06:29:53 06:29:53 build: 06:29:53 No sub-builds to iterate on 06:29:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:29:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:29:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 06:29:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 06:29:53 06:29:53 tools-init: 06:29:53 no-op 06:29:53 06:29:53 retrieve: 06:29:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:29:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:29:54 WARNING: An illegal reflective access operation has occurred 06:29:54 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 06:29:54 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 06:29:54 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 06:29:54 WARNING: All illegal access operations will be denied in a future release 06:30:56 06:30:56 prepare: 06:30:56 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 06:30:56 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 06:30:56 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 06:30:56 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:30:56 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:30:56 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 06:30:56 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 06:30:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:30:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:30:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:30:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:30:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:30:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:30:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:30:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:30:56 06:30:56 pre-compile: 06:30:56 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:30:56 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:30:56 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:30:56 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:30:56 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:30:56 06:30:56 compile: 06:30:56 no-op 06:30:57 06:30:57 package: 06:30:57 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 06:30:57 06:30:57 install: 06:30:57 :: delivering :: omero#omero_client;working@aa84d84ce982 :: 5.6.3-452-73ca23df5e-ice36 :: integration :: Fri Apr 12 06:29:53 UTC 2024 06:30:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 06:30:57 :: publishing :: omero#omero_client 06:30:57 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-452-73ca23df5e-ice36/omero_client-5.6.3-452-73ca23df5e-ice36.jar 06:30:57 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-452-73ca23df5e-ice36/omero_client-5.6.3-452-73ca23df5e-ice36.xml 06:30:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:30:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:30:58 06:30:58 retrieve: 06:30:58 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:30:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:30:58 Entering /home/omero/workspace/OMERO-build/src/components/tools... 06:30:58 06:30:58 dist: 06:30:58 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 06:30:58 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 06:30:58 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 06:30:58 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 06:30:59 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 06:30:59 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 06:30:59 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 06:30:59 Entering /home/omero/workspace/OMERO-build/src/components/tests... 06:30:59 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 06:30:59 06:30:59 copy-licenses: 06:30:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 06:30:59 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 06:30:59 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 06:30:59 06:30:59 copy-history: 06:30:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 06:30:59 06:30:59 copy-etc: 06:30:59 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 06:30:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 06:30:59 06:30:59 copy-sql: 06:30:59 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 06:31:16 06:31:16 copy-server: 06:31:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 06:31:16 06:31:16 copy-client: 06:31:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 06:31:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 06:31:18 06:31:18 update-version: 06:31:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 06:31:18 06:31:18 create-workdirs: 06:31:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 06:31:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 06:31:18 06:31:18 copy-luts: 06:31:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 06:31:18 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 06:31:18 06:31:18 test-compile: 06:31:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:31:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 06:31:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:31:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:31:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:31:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:31:18 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 06:31:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 06:31:18 06:31:18 testng-init: 06:31:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:31:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:31:24 06:31:23,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 06:31:24 06:31:23,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - No custom configurators were discovered as a service. 06:31:24 06:31:23,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 06:31:24 06:31:23,858 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 06:31:24 06:31:23,859 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 06:31:24 06:31:23,859 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 06:31:24 06:31:23,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 06:31:24 06:31:23,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 06:31:24 06:31:23,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 06:31:24 06:31:23,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 06:31:24 06:31:23,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 06:31:24 06:31:23,869 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs multiple times on the classpath. 06:31:24 06:31:23,869 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 06:31:24 06:31:23,869 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 06:31:24 06:31:24,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 06:31:24 06:31:24,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 06:31:24 06:31:24,308 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 06:31:24 06:31:24,310 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 06:31:24 06:31:24,310 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Please move "immediateFlush" property into the enclosing appender. 06:31:24 06:31:24,407 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Setting the "immediateFlush" property of the enclosing appender to true 06:31:24 06:31:24,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 06:31:24 06:31:24,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 06:31:24 06:31:24,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 06:31:24 06:31:24,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 06:31:24 06:31:24,409 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 06:31:24 06:31:24,409 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 06:31:24 06:31:24,411 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5bd8b901 - End of configuration. 06:31:24 06:31:24,414 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5390bdee - Registering current configuration as safe fallback point 06:31:24 06:31:24,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 550 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 06:31:24 06:31:24 lifecycle.test-compile: 06:31:24 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 06:31:24 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 06:31:25 warning: [options] bootstrap class path not set in conjunction with -source 8 06:31:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:31:27 import omero.grid.RawAccessRequest; 06:31:27 ^ 06:31:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:31:27 import omero.grid.RawAccessRequest; 06:31:27 ^ 06:31:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:31:27 import omero.grid.RawAccessRequest; 06:31:27 ^ 06:31:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 06:31:27 import omero.model.ImportJob; 06:31:27 ^ 06:31:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 06:31:27 import omero.model.ImportJobI; 06:31:27 ^ 06:31:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 06:31:28 IObject link = (IObject) linkClass.newInstance(); 06:31:28 ^ 06:31:28 where T is a type-variable: 06:31:28 T extends Object declared in class Class 06:31:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 06:31:29 T copy = (T) obj.getClass().newInstance(); 06:31:29 ^ 06:31:29 where T is a type-variable: 06:31:29 T extends Object declared in class Class 06:31:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:31:29 RawAccessRequest raw = new RawAccessRequest(); 06:31:29 ^ 06:31:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:31:29 RawAccessRequest raw = new RawAccessRequest(); 06:31:29 ^ 06:31:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 06:31:29 raw.repoUuid = legacy.root().getHash().getValue(); 06:31:29 ^ 06:31:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 06:31:29 raw.command = "rm"; 06:31:29 ^ 06:31:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 06:31:29 raw.args = Arrays.asList(path); 06:31:29 ^ 06:31:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 06:31:29 final IObject link = linkClass.newInstance(); 06:31:29 ^ 06:31:29 where T is a type-variable: 06:31:29 T extends Object declared in class Class 06:31:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 06:31:29 originalLink.setChild(annotationClass.newInstance()); 06:31:29 ^ 06:31:29 where T is a type-variable: 06:31:29 T extends Object declared in class Class 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 06:31:30 RoiResult r = svc.findByImage(id, new RoiOptions()); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:31:30 final RawAccessRequest request = new RawAccessRequest(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:31:30 final RawAccessRequest request = new RawAccessRequest(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 06:31:30 request.repoUuid = repo.root().getHash().getValue(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 06:31:30 request.command = "exists"; 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 06:31:30 request.args = Collections.singletonList(dirPath); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:31:30 final RawAccessRequest request = new RawAccessRequest(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:31:30 final RawAccessRequest request = new RawAccessRequest(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 06:31:30 request.repoUuid = repo.root().getHash().getValue(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 06:31:30 request.command = "exists"; 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 06:31:30 request.args = Collections.singletonList(dirName); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 06:31:30 final ImportJob importJob = new ImportJobI(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 06:31:30 final ImportJob importJob = new ImportJobI(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 06:31:30 importJob.setImageName(omero.rtypes.rstring(name)); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 06:31:30 importJob.setImageDescription(omero.rtypes.rstring(desc)); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 06:31:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 06:31:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 06:31:30 final String savedName = sent.getImageName().getValue().toString(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 06:31:30 final String savedDesc = sent.getImageDescription().getValue().toString(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 06:31:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 06:31:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 06:31:30 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 06:31:30 ^ 06:31:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 06:31:30 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 06:31:30 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 RoiResult r = svc.findByImage(image.getId().getValue(), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 06:31:31 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 06:31:31 table = svc.getTable(f.getId().getValue()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 RoiResult r = svc.findByImage(image.getId().getValue(), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 06:31:31 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 06:31:31 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 06:31:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 06:31:31 svc.getShapeStatsRestricted( 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 06:31:31 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:31:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 06:31:31 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 06:31:31 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 06:31:31 request.typesToIgnore = Collections.singletonList("Annotation"); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 06:31:31 request.typesToIgnore = Collections.singletonList("Annotation"); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:31:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:31:31 p2.setRelatedTo(p1); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:31:31 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:31:31 pixels1.setRelatedTo(pixels2); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:31:31 Pixels pixels = pixels1.getRelatedTo(); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:31:31 Assert.assertNull(pixels1.getRelatedTo()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:31:31 pixels1.setRelatedTo(pixels2); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:31:31 Pixels pixels = pixels1.getRelatedTo(); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:31:31 Assert.assertNull(pixels1.getRelatedTo()); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:31:31 ^ 06:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:31:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 06:31:31 ^ 06:31:32 Note: Some input files use unchecked or unsafe operations. 06:31:32 Note: Recompile with -Xlint:unchecked for details. 06:31:32 88 warnings 06:31:32 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2118236101.tmp 06:31:32 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 06:31:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:31:32 :: delivering :: omero#OmeroJava-test;working@aa84d84ce982 :: 5.6.3-452-73ca23df5e-ice36 :: integration :: Fri Apr 12 06:31:18 UTC 2024 06:31:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 06:31:32 :: publishing :: omero#OmeroJava-test 06:31:32 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-452-73ca23df5e-ice36.jar 06:31:32 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-452-73ca23df5e-ice36.xml 06:31:32 06:31:32 build-eclipse: 06:31:32 No sub-builds to iterate on 06:31:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 06:31:32 06:31:32 retrieve: 06:31:32 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:31:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:31:35 06:31:35 prepare: 06:31:35 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 06:31:37 06:31:37 release-clients: 06:31:37 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-452-73ca23df5e-ice36.zip 06:31:43 06:31:43 release-zip: 06:31:43 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-452-73ca23df5e-ice36.zip 06:31:56 06:31:56 BUILD SUCCESSFUL 06:31:56 Total time: 2 minutes 7 seconds 06:31:57 ++ '[' -d .git ']' 06:31:57 ++ python3 ./build.py release-src 06:31:57 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 06:31:57 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 06:31:57 06:31:57 release-src-git: 06:31:57 Releasing openmicroscopy-5.6.3-452-73ca23df5e-ice36 06:31:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-452-73ca23df5e-ice36.zip 06:31:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-452-73ca23df5e-ice36-base.zip 06:32:01 06:32:01 BUILD SUCCESSFUL 06:32:01 Total time: 4 seconds 06:32:01 ++ echo BUILD_NUMBER=30 06:32:01 ++ echo OMERO_BRANCH=merge_ci 06:32:01 ++ git_info 06:32:01 +++ git rev-parse HEAD 06:32:01 ++ HEAD=73ca23df5ecd2d0e40a68ab9304894c9b6df91ad 06:32:01 ++ git log --max-count=1 73ca23df5ecd2d0e40a68ab9304894c9b6df91ad 06:32:01 ++ env 06:32:01 ++ sort 06:32:01 Archiving artifacts 06:32:34 Finished: SUCCESS